AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0804680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0804680 MtrunA17_Chr5g0412381 96.304 947 25 4 1 941 1 943 0.0 1881
Msa0804680 MtrunA17_Chr3g0133061 56.040 505 174 9 373 852 522 1003 5.34e-168 520
Msa0804680 MtrunA17_Chr3g0133061 36.879 141 66 4 19 159 24 141 1.27e-17 88.6
Msa0804680 MtrunA17_Chr5g0427301 49.906 531 230 9 337 846 442 957 3.59e-157 489
Msa0804680 MtrunA17_Chr5g0427301 39.877 163 72 6 1 139 1 161 3.38e-23 106
Msa0804680 MtrunA17_Chr2g0313171 47.289 461 215 8 405 842 442 897 1.07e-127 409
Msa0804680 MtrunA17_Chr2g0313171 34.906 106 53 2 28 126 30 126 9.50e-13 72.4
Msa0804680 MtrunA17_Chr1g0150541 50.704 355 165 3 408 753 162 515 5.26e-117 377
Msa0804680 MtrunA17_Chr4g0074041 38.762 307 173 7 428 723 93 395 9.03e-58 214
Msa0804680 MtrunA17_Chr2g0312901 36.335 322 188 9 426 734 21 338 2.91e-54 200
Msa0804680 MtrunA17_Chr6g0458421 35.577 312 185 8 422 724 24 328 3.60e-49 184
Msa0804680 MtrunA17_Chr6g0458431 34.505 313 189 8 421 724 88 393 1.63e-47 181
Msa0804680 MtrunA17_Chr6g0458441 35.275 309 184 8 425 724 125 426 3.64e-47 179
Msa0804680 MtrunA17_Chr5g0411271 33.981 309 179 9 428 724 155 450 1.01e-44 173
Msa0804680 MtrunA17_Chr8g0366721 30.312 320 189 9 428 735 213 510 4.11e-37 147
Msa0804680 MtrunA17_Chr8g0365831 30.573 314 186 11 428 723 165 464 2.08e-31 130
Msa0804680 MtrunA17_Chr1g0149991 26.781 351 194 12 428 723 182 524 1.92e-30 127
Msa0804680 MtrunA17_Chr4g0062561 30.592 304 186 8 428 723 254 540 9.37e-30 127
Msa0804680 MtrunA17_Chr4g0062561 27.273 297 187 8 445 728 577 857 3.00e-22 103
Msa0804680 MtrunA17_Chr3g0123951 27.914 326 184 9 427 711 23 338 1.41e-26 112
Msa0804680 MtrunA17_Chr8g0382161 27.245 323 190 8 427 711 23 338 1.75e-25 109
Msa0804680 MtrunA17_Chr4g0062491 26.333 300 185 9 463 743 31 313 1.40e-21 97.1
Msa0804680 MtrunA17_Chr1g0148321 27.243 301 172 13 426 703 106 382 1.31e-15 82.0
Msa0804680 MtrunA17_Chr2g0322211 34.000 150 87 4 585 725 717 863 6.54e-15 79.3
Msa0804680 MtrunA17_Chr3g0138791 27.869 305 165 13 426 703 106 382 2.02e-14 78.2
Msa0804680 MtrunA17_Chr1g0189101 34.228 149 85 5 585 723 765 910 2.32e-12 71.2
Msa0804680 MtrunA17_Chr1g0170261 24.217 351 191 16 428 727 202 528 5.20e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0804680 AT5G65450.2 43.874 857 346 24 5 852 8 738 0.0 584
Msa0804680 AT5G65450.1 43.905 845 339 24 17 852 1 719 0.0 577
Msa0804680 AT4G24560.1 47.454 491 231 8 375 855 491 964 4.48e-135 431
Msa0804680 AT4G24560.1 45.283 106 42 2 22 127 25 114 3.87e-20 97.1
Msa0804680 AT2G24640.1 52.089 359 157 3 379 728 132 484 8.84e-124 391
Msa0804680 AT4G31670.1 53.354 328 144 2 405 723 146 473 8.19e-120 379
Msa0804680 AT2G24640.2 54.459 314 134 2 424 728 1 314 5.78e-119 372
Msa0804680 AT1G17110.2 43.182 484 212 8 376 842 388 825 1.64e-118 384
Msa0804680 AT1G17110.2 60.000 50 20 0 77 126 120 169 3.73e-14 77.4
Msa0804680 AT1G17110.3 44.469 452 191 6 405 842 416 821 4.94e-118 383
Msa0804680 AT1G17110.3 60.000 50 20 0 77 126 120 169 3.92e-14 77.4
Msa0804680 AT1G17110.1 44.469 452 191 6 405 842 416 821 4.94e-118 383
Msa0804680 AT1G17110.1 60.000 50 20 0 77 126 120 169 3.92e-14 77.4
Msa0804680 AT5G57990.1 35.866 329 193 8 428 742 108 432 7.91e-57 211
Msa0804680 AT3G14400.1 35.928 334 191 9 426 739 23 353 2.32e-52 195
Msa0804680 AT5G46740.1 31.329 316 186 10 428 723 164 468 2.17e-33 138
Msa0804680 AT4G17895.1 30.818 318 197 9 428 732 177 484 1.08e-32 136
Msa0804680 AT5G46740.2 34.667 225 131 7 510 723 40 259 8.60e-28 119
Msa0804680 AT2G22310.1 27.405 343 195 9 427 721 23 359 1.35e-27 116
Msa0804680 AT4G39910.1 27.914 326 188 8 427 711 23 342 2.32e-26 112
Msa0804680 AT5G10790.2 26.558 369 195 13 425 725 43 403 3.87e-25 110
Msa0804680 AT5G10790.1 26.558 369 195 13 425 725 172 532 1.75e-24 109
Msa0804680 AT2G22310.3 26.623 308 184 8 440 711 4 305 3.17e-21 96.7
Msa0804680 AT2G22310.2 26.403 303 181 8 445 711 4 300 4.98e-20 92.8
Msa0804680 AT4G10590.4 35.570 149 83 5 585 723 748 893 9.54e-13 72.8
Msa0804680 AT4G10590.3 35.570 149 83 5 585 723 748 893 9.54e-13 72.8
Msa0804680 AT4G10590.1 35.570 149 83 5 585 723 748 893 9.54e-13 72.8
Msa0804680 AT4G10590.2 35.570 149 83 5 585 723 748 893 9.54e-13 72.8
Msa0804680 AT1G04860.1 35.938 128 59 4 616 723 832 956 5.57e-12 70.5
Msa0804680 AT5G22030.1 32.215 149 88 5 585 723 723 868 8.22e-12 70.1
Msa0804680 AT5G22030.2 32.215 149 88 5 585 723 765 910 8.77e-12 69.7
Msa0804680 AT4G10570.1 34.228 149 85 5 585 723 749 894 2.05e-11 68.6
Msa0804680 AT5G06600.2 24.194 372 195 18 414 727 184 526 4.58e-11 67.8
Msa0804680 AT5G06600.1 24.194 372 195 18 414 727 185 527 4.66e-11 67.8
Msa0804680 AT1G32850.1 33.557 149 86 5 585 723 734 879 4.78e-11 67.4
Msa0804680 AT3G11910.4 24.259 371 195 18 414 727 183 524 4.94e-11 67.4
Msa0804680 AT3G11910.2 24.259 371 195 18 414 727 183 524 4.94e-11 67.4
Msa0804680 AT3G11910.3 24.259 371 195 18 414 727 184 525 5.03e-11 67.4
Msa0804680 AT3G11910.1 24.259 371 195 18 414 727 184 525 5.03e-11 67.4
Msa0804680 AT5G06600.3 24.194 372 195 18 414 727 185 527 5.06e-11 67.4

Find 204 sgRNAs with CRISPR-Local

Find 613 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTATTTGTTATTGGTTT+TGG 0.121892 5_3:-20620484 Msa0804680:CDS
AATACGATTGTAAGAATATT+TGG 0.152865 5_3:+20614138 None:intergenic
ATTTACAGCGCCTGAAATTT+TGG 0.163683 5_3:-20616886 Msa0804680:CDS
AGGTTTGGTTTATTTGTTAT+TGG 0.215145 5_3:-20620490 Msa0804680:CDS
CTTACTGAACCCAGGGGTTT+TGG 0.224633 5_3:+20612896 None:intergenic
TTATCTTTATCCAAAATTTC+AGG 0.225753 5_3:+20616876 None:intergenic
CAGTATTGTCAACTTCTTCT+TGG 0.226243 5_3:+20614167 None:intergenic
CACTTAGAAGTGTCTGTTAT+TGG 0.226390 5_3:+20618833 None:intergenic
GTTATCCTATAAGGGCAAAA+TGG 0.243437 5_3:+20620623 None:intergenic
TAGTTGAATCTCCATTCTTC+TGG 0.247696 5_3:+20612689 None:intergenic
ACTCTCATTGGATACACTTT+TGG 0.259420 5_3:-20617165 Msa0804680:CDS
AGCAAAAGGGTTATCCTATA+AGG 0.274951 5_3:+20620614 None:intergenic
ACAAGATACTACTGCTTCTA+TGG 0.281969 5_3:-20620394 Msa0804680:CDS
CTTTATCTTCCGAGTCTTGC+TGG 0.282680 5_3:+20612417 None:intergenic
TATGTGTCGGATTTAGCTTT+TGG 0.327935 5_3:+20618920 None:intergenic
GGAACAGAATTTGGTCTTCA+TGG 0.328708 5_3:-20619345 Msa0804680:intron
TCAGTATCAGGAACAGAATT+TGG 0.328828 5_3:-20619354 Msa0804680:CDS
ACTGCATAAAGACTGTAAAA+TGG 0.330409 5_3:+20613900 None:intergenic
GTTGCACTCCTCATTTCCTT+TGG 0.334119 5_3:-20619050 Msa0804680:CDS
TCCAATTGGCACGGCCAGTA+TGG 0.345562 5_3:-20612524 Msa0804680:CDS
TCCTTTCTTCCACTCATGTA+TGG 0.349135 5_3:+20613930 None:intergenic
TGATGGAGATATTGAAACTT+TGG 0.357074 5_3:-20616925 Msa0804680:CDS
ACATCTAGGGCATCAGTATC+AGG 0.357745 5_3:-20619366 Msa0804680:CDS
TACTGCTTCTATGGCTCATA+TGG 0.359546 5_3:-20620385 Msa0804680:CDS
ACTTCTCCACTTTCTCCAAT+TGG 0.366435 5_3:-20617450 Msa0804680:CDS
CTTGAACTTTCCAGTTGAAA+AGG 0.367423 5_3:+20612862 None:intergenic
GGAGTCATATCCAGGACTTC+AGG 0.367763 5_3:+20613951 None:intergenic
TGGAGGATATCTACGATCTA+AGG 0.370301 5_3:-20617145 Msa0804680:intron
AAGAATTCTTGCGCTAATAC+TGG 0.375874 5_3:+20612147 None:intergenic
CACAAGATTGGAAGTCATCT+TGG 0.379158 5_3:-20617411 Msa0804680:CDS
TTGAAATCTTCTTCTTATCC+TGG 0.382747 5_3:+20620544 None:intergenic
ACCTGTTCCCACAGTTTGTA+AGG 0.383832 5_3:+20618153 None:intergenic
TTATGCAGTGGTCGTCCATT+TGG 0.385617 5_3:-20613886 Msa0804680:CDS
TCCATACTGGCCGTGCCAAT+TGG 0.396800 5_3:+20612523 None:intergenic
GATCTTACTGTTGAGATTGA+TGG 0.398304 5_3:-20616942 Msa0804680:CDS
GCCTTACAAACTGTGGGAAC+AGG 0.403690 5_3:-20618154 Msa0804680:intron
CTTCTCCACTTTCTCCAATT+GGG 0.405205 5_3:-20617449 Msa0804680:CDS
AGAAGAGAGAAGAGGTTATG+AGG 0.406519 5_3:-20620422 Msa0804680:CDS
TGCAAAAGATATGATGTTAG+AGG 0.410696 5_3:+20617647 None:intergenic
AGGAATCATCAACGGCATTC+CGG 0.411036 5_3:+20612732 None:intergenic
TTGTGGTGATTCGTTATGTT+TGG 0.412049 5_3:-20620458 Msa0804680:CDS
ACAGAAGAAACAACTCTCAT+TGG 0.412098 5_3:-20617177 Msa0804680:CDS
GCAAAAGGGTTATCCTATAA+GGG 0.414040 5_3:+20620615 None:intergenic
GAGAGAAGAGGTTATGAGGT+TGG 0.414269 5_3:-20620418 Msa0804680:CDS
TTTCACTAATATAAGTAGAA+TGG 0.418206 5_3:-20612188 Msa0804680:three_prime_UTR
TTGAGATAGAATCAAACATC+TGG 0.424071 5_3:-20612238 Msa0804680:three_prime_UTR
GCTGCAAAGCTGTTAGATAC+TGG 0.425233 5_3:-20620221 Msa0804680:intron
ACATTCAAGGAGAATGGTTC+AGG 0.428022 5_3:-20613815 Msa0804680:CDS
GTTCCTGTTTCAGTTTCTCA+TGG 0.428479 5_3:-20620291 Msa0804680:CDS
CTTCAACAAAATGTTCGTAA+TGG 0.428992 5_3:-20618590 Msa0804680:CDS
CTATCGGGGAAGAAATACTA+TGG 0.429666 5_3:-20612669 Msa0804680:CDS
ATGGCTCATATGGAAGCTTA+TGG 0.432782 5_3:-20620375 Msa0804680:CDS
CAAGAAGAAGTTGACAATAC+TGG 0.433670 5_3:-20614166 Msa0804680:CDS
AATGCCGTTGATGATTCCTT+TGG 0.438331 5_3:-20612728 Msa0804680:CDS
TTCACTAATATAAGTAGAAT+GGG 0.439685 5_3:-20612187 Msa0804680:three_prime_UTR
ATCTTAGATAATATCCCAAT+TGG 0.440970 5_3:+20617435 None:intergenic
ATCTGTATGCAAGGTATCAT+AGG 0.441162 5_3:+20612472 None:intergenic
CGAGCACAACGCATGGTAGT+AGG 0.445877 5_3:+20620243 None:intergenic
GATAAAGTGCTTAAGGTGCC+TGG 0.447779 5_3:-20616994 Msa0804680:CDS
AAGGTGAAACTATTTCCCTT+TGG 0.448054 5_3:-20618176 Msa0804680:CDS
CAGGCACTCTCCAAAACCCC+TGG 0.448154 5_3:-20612906 Msa0804680:CDS
TTATCCTATAAGGGCAAAAT+GGG 0.448963 5_3:+20620624 None:intergenic
GAAACTTTGGAGGAGGCTCT+TGG 0.449157 5_3:-20616912 Msa0804680:CDS
TTGGTGAGGCAGGGTCCAAT+TGG 0.452714 5_3:-20612538 Msa0804680:CDS
AGAATTCTTGTGTACAAGTA+AGG 0.454753 5_3:-20612133 Msa0804680:three_prime_UTR
AAATGCAGATAAAGTGCTTA+AGG 0.454777 5_3:-20617001 Msa0804680:intron
TCAAAAGAAGCTGAATTTGA+AGG 0.458170 5_3:+20620327 None:intergenic
TCAAATATCTTCAACTACTA+AGG 0.458919 5_3:-20618693 Msa0804680:CDS
GAGTCATATCCAGGACTTCA+GGG 0.463677 5_3:+20613952 None:intergenic
TTCTTAACTTCAATATTGAC+AGG 0.465879 5_3:+20619016 None:intergenic
TCTTCACATAGCAAACATAA+TGG 0.467180 5_3:+20613838 None:intergenic
AATATCCCAATTGGAGAAAG+TGG 0.468182 5_3:+20617444 None:intergenic
TCATGATGAGGCATCAAAGT+TGG 0.471953 5_3:-20618897 Msa0804680:CDS
TGCTATGTGAAGAACATTCA+AGG 0.474890 5_3:-20613828 Msa0804680:CDS
TCCCTCCGTACAGCAGAAGC+AGG 0.476218 5_3:-20612768 Msa0804680:CDS
TTTAGATTCCAAAGGAAATG+AGG 0.478331 5_3:+20619042 None:intergenic
ATAGAAAATGAACATAAAAC+AGG 0.478670 5_3:+20611999 None:intergenic
AGAGTTGTTTCTTCTGTCAA+AGG 0.480437 5_3:+20617183 None:intergenic
CTAATTCAGAAGGCAAAAGA+AGG 0.480521 5_3:-20617474 Msa0804680:CDS
AGAATGGAGATTCAACTATC+GGG 0.481143 5_3:-20612684 Msa0804680:CDS
TGGATCCTGTGTTGGGGACC+AGG 0.484738 5_3:-20620562 Msa0804680:five_prime_UTR
CATGATGAGGCATCAAAGTT+GGG 0.487207 5_3:-20618896 Msa0804680:CDS
TCTAACATCTGTTGAAAATG+AGG 0.487607 5_3:-20618504 Msa0804680:intron
TACCCATGAGAAACTGAAAC+AGG 0.487847 5_3:+20620288 None:intergenic
AGTTCAGTTCCCTGAAGTCC+TGG 0.488513 5_3:-20613961 Msa0804680:CDS
GGAAGAAGATGCAGCCGAGT+TGG 0.490012 5_3:+20612493 None:intergenic
TCTCCGTGCTTCTTTGTACC+TGG 0.491522 5_3:+20618739 None:intergenic
AGTTCCACGAAAAGTTCATA+AGG 0.491793 5_3:+20618212 None:intergenic
CAGTGGACAATGATGCTGAT+AGG 0.494139 5_3:-20612445 Msa0804680:CDS
ATAATAAGTATAATTGTGGC+AGG 0.498980 5_3:-20616857 Msa0804680:intron
ACGACGAGAATGTTACATCT+AGG 0.499991 5_3:-20619380 Msa0804680:CDS
AATCTGTATACCCAGAAGAA+TGG 0.500875 5_3:-20612700 Msa0804680:CDS
TGGAGATATTGAAACTTTGG+AGG 0.501477 5_3:-20616922 Msa0804680:CDS
TCATGTATGGAGTCATATCC+AGG 0.504692 5_3:+20613943 None:intergenic
AGTTGAATCTCCATTCTTCT+GGG 0.506322 5_3:+20612690 None:intergenic
TTCCTGTTTCAGTTTCTCAT+GGG 0.506577 5_3:-20620290 Msa0804680:CDS
AAGAATGGAGATTCAACTAT+CGG 0.508547 5_3:-20612685 Msa0804680:CDS
CCACAGTTTGTAAGGCCAAA+GGG 0.509994 5_3:+20618161 None:intergenic
TTATCTAAGATACACAAGAT+TGG 0.510095 5_3:-20617423 Msa0804680:CDS
ATAAAGTGCTTAAGGTGCCT+GGG 0.510769 5_3:-20616993 Msa0804680:CDS
CCCTGCTTCTGCTGTACGGA+GGG 0.511074 5_3:+20612767 None:intergenic
CCCTTTGGCCTTACAAACTG+TGG 0.511138 5_3:-20618161 Msa0804680:CDS
TAATGCAGCACTCCAATGCT+TGG 0.511611 5_3:-20617681 Msa0804680:CDS
TGAAGAACATTCAAGGAGAA+TGG 0.514909 5_3:-20613821 Msa0804680:CDS
TCCATACATGAGTGGAAGAA+AGG 0.515325 5_3:-20613931 Msa0804680:CDS
GTCGTTGACCTCCCTGGTGG+TGG 0.517256 5_3:+20619398 None:intergenic
AAGCATTCATGATATCCAAA+TGG 0.518832 5_3:+20613871 None:intergenic
GGTTCAGGACTGATGACAGC+AGG 0.519650 5_3:-20613800 Msa0804680:CDS
CTTATCCTGGTCCCCAACAC+AGG 0.521921 5_3:+20620557 None:intergenic
GCTGAGTATACGCCAAGCAT+TGG 0.523037 5_3:+20617669 None:intergenic
AAAGGAAATCATGTTAATGT+TGG 0.523088 5_3:-20619232 Msa0804680:CDS
CCTTTGGCCTTACAAACTGT+GGG 0.525061 5_3:-20618160 Msa0804680:CDS
ATTCTCGTCGTTGACCTCCC+TGG 0.528198 5_3:+20619392 None:intergenic
TGGAAGAATCGCATTTGTCC+AGG 0.528424 5_3:-20618757 Msa0804680:CDS
CGTCTTAGAAACAGCAGGAA+TGG 0.529122 5_3:+20612823 None:intergenic
TTGGAAGTCATCTTGGACAT+GGG 0.529236 5_3:-20617404 Msa0804680:CDS
CTGTCCCTGCTTCTGCTGTA+CGG 0.530138 5_3:+20612763 None:intergenic
CAAGCTTCAGTTTCTAGTGA+CGG 0.533804 5_3:-20620701 Msa0804680:five_prime_UTR
AAAGTTCAAGAGGAGAAGCT+TGG 0.534645 5_3:-20612849 Msa0804680:CDS
AAAGATAATAAGTATAATTG+TGG 0.535772 5_3:-20616861 Msa0804680:CDS
CACTGAGAAATCTGTATGCA+AGG 0.542434 5_3:+20612463 None:intergenic
TTAGCAGTATTATCACTGAC+AGG 0.543034 5_3:+20619112 None:intergenic
AAGACTCTTGACAATTCGAC+AGG 0.543718 5_3:+20613073 None:intergenic
AGAATCAGCATTTGTAGCCA+TGG 0.544421 5_3:+20612790 None:intergenic
ATCAGTATTTGAATTACTCA+AGG 0.546719 5_3:+20618796 None:intergenic
CGACGAGAATGTTACATCTA+GGG 0.549584 5_3:-20619379 Msa0804680:CDS
AGTTGGAAGAAATTCCATAC+TGG 0.550381 5_3:+20612510 None:intergenic
CGTCACTAGAAACTGAAGCT+TGG 0.550491 5_3:+20620702 None:intergenic
GTAAGTGTCAAATTAGTCAC+TGG 0.552713 5_3:-20619458 Msa0804680:CDS
CACAGTTCCGTCGTTGTCGG+TGG 0.555570 5_3:+20619072 None:intergenic
GGTACTTGCATCGTTTCGAA+TGG 0.557171 5_3:+20617618 None:intergenic
CAACACAGTTCCGTCGTTGT+CGG 0.557421 5_3:+20619069 None:intergenic
TGCTGAAGAGAAGAGAGAAG+AGG 0.557595 5_3:-20620430 Msa0804680:CDS
AGCAGGGACAGCACTCTCAC+CGG 0.559255 5_3:-20612751 Msa0804680:CDS
CCCACAGTTTGTAAGGCCAA+AGG 0.560807 5_3:+20618160 None:intergenic
TAAGACGCGGTCGAATTCCA+TGG 0.561132 5_3:-20612807 Msa0804680:CDS
GGCCTTCGATTACCACCACC+AGG 0.562640 5_3:-20619410 Msa0804680:CDS
CATACATGCTTCTTTATGCA+AGG 0.567312 5_3:-20613039 Msa0804680:intron
ATTGCTACTTACTGAACCCA+GGG 0.567598 5_3:+20612889 None:intergenic
TAACAGACACTTCTAAGTGC+AGG 0.568492 5_3:-20618829 Msa0804680:CDS
CAAATTAGTCACTGGAGACA+AGG 0.573340 5_3:-20619450 Msa0804680:CDS
TGAGAGGTATGAGAGAATGA+TGG 0.574311 5_3:-20616964 Msa0804680:CDS
TTTCCTCGCATAGAGCAAAA+GGG 0.575633 5_3:+20620601 None:intergenic
TATGCAATATATTTGTCTCA+AGG 0.576773 5_3:-20617223 Msa0804680:CDS
TTTCAACTGGAAAGTTCAAG+AGG 0.577233 5_3:-20612859 Msa0804680:CDS
GTTTGAATATCTAATTCAGA+AGG 0.577524 5_3:-20617484 Msa0804680:CDS
AGCAACAGAAGCATTAATGC+TGG 0.579662 5_3:+20619189 None:intergenic
AGATATTGAAACTTTGGAGG+AGG 0.580830 5_3:-20616919 Msa0804680:CDS
AGCAACACTACTGATGAGAC+TGG 0.581283 5_3:-20618959 Msa0804680:CDS
CATTGCTACTTACTGAACCC+AGG 0.583614 5_3:+20612888 None:intergenic
GTATTTGAATTACTCAAGGA+AGG 0.584094 5_3:+20618800 None:intergenic
TATATTTGTCTCAAGGAAGC+CGG 0.584421 5_3:-20617216 Msa0804680:CDS
TTTCCGTGGATCCTGTGTTG+GGG 0.586679 5_3:-20620568 Msa0804680:five_prime_UTR
GTTCTCAATAGGTCAGAAGA+GGG 0.588977 5_3:-20617526 Msa0804680:intron
GACCGCGTCTTAGAAACAGC+AGG 0.590979 5_3:+20612818 None:intergenic
TGTCAAAGGACTTGATAGAC+CGG 0.591889 5_3:+20617197 None:intergenic
TCCCTGGTGGTGGTAATCGA+AGG 0.592630 5_3:+20619408 None:intergenic
CATACCTCTCAGATTTCCCC+AGG 0.592897 5_3:+20616976 None:intergenic
GAGGCAGGGTCCAATTGGCA+CGG 0.593462 5_3:-20612533 Msa0804680:CDS
ATTGGAAGTCATCTTGGACA+TGG 0.593636 5_3:-20617405 Msa0804680:CDS
CAATAGGTCAGAAGAGGGGA+TGG 0.594667 5_3:-20617521 Msa0804680:intron
TCATCTTGGACATGGGAGAG+AGG 0.596485 5_3:-20617397 Msa0804680:CDS
TAGGAGGCTCCAGCAAGACT+CGG 0.596936 5_3:-20612426 Msa0804680:CDS
TAAGAAGAAGATTTCAACAA+TGG 0.597011 5_3:-20620538 Msa0804680:exon
GAAGAAGATTTCAACAATGG+TGG 0.600589 5_3:-20620535 Msa0804680:exon
AAGGTCACAAGGACGAATGT+TGG 0.601222 5_3:-20619431 Msa0804680:CDS
GTATGGAATTTCTTCCAACT+CGG 0.603183 5_3:-20612507 Msa0804680:CDS
AGGCACTCTCCAAAACCCCT+GGG 0.603241 5_3:-20612905 Msa0804680:CDS
TACTACAAGTACAAAGGACT+CGG 0.604089 5_3:-20612591 Msa0804680:CDS
TAATTCAGAAGGCAAAAGAA+GGG 0.604303 5_3:-20617473 Msa0804680:CDS
GGTCCCCAACACAGGATCCA+CGG 0.606466 5_3:+20620565 None:intergenic
TGTTCTCAATAGGTCAGAAG+AGG 0.607331 5_3:-20617527 Msa0804680:intron
TCCCTGCTTCTGCTGTACGG+AGG 0.611151 5_3:+20612766 None:intergenic
AATATCTTCAACTACTAAGG+AGG 0.612434 5_3:-20618690 Msa0804680:CDS
TTTGCAGCGAGCACAACGCA+TGG 0.613380 5_3:+20620236 None:intergenic
TGGACAATGATGCTGATAGG+AGG 0.625036 5_3:-20612442 Msa0804680:CDS
GGAACTTTATTGTTATGACA+AGG 0.634679 5_3:-20618195 Msa0804680:CDS
GAATGGAGATTCAACTATCG+GGG 0.641373 5_3:-20612683 Msa0804680:CDS
ATCCGACACATATCATGATG+AGG 0.641909 5_3:-20618909 Msa0804680:CDS
GTATACAGATTCATTGCCAA+AGG 0.642712 5_3:+20612712 None:intergenic
CCCTCCGTACAGCAGAAGCA+GGG 0.643033 5_3:-20612767 Msa0804680:CDS
TTCCTGCTGTTTCTAAGACG+CGG 0.645116 5_3:-20612820 Msa0804680:CDS
TCACTGGAGACAAGGTCACA+AGG 0.645616 5_3:-20619442 Msa0804680:CDS
AATGGGAAAGATAGTTGCGT+CGG 0.645663 5_3:+20620641 None:intergenic
GTAGCTTCCACCGACAACGA+CGG 0.646206 5_3:-20619079 Msa0804680:CDS
CTCGTCGTTGACCTCCCTGG+TGG 0.656639 5_3:+20619395 None:intergenic
ATTGCCAAAGGAATCATCAA+CGG 0.660841 5_3:+20612724 None:intergenic
ATGAGTCATGAGTCTCGTGA+CGG 0.661809 5_3:+20619143 None:intergenic
GTTCAGGACTGATGACAGCA+GGG 0.663226 5_3:-20613799 Msa0804680:intron
GATGAGGCATCAAAGTTGGG+TGG 0.663974 5_3:-20618893 Msa0804680:CDS
TAAAGTGCTTAAGGTGCCTG+GGG 0.666066 5_3:-20616992 Msa0804680:CDS
TGCCTCATCATGATATGTGT+CGG 0.666217 5_3:+20618907 None:intergenic
TGTCCAGGTACAAAGAAGCA+CGG 0.666419 5_3:-20618742 Msa0804680:CDS
GATATGACTCCATACATGAG+TGG 0.668813 5_3:-20613939 Msa0804680:CDS
TTGCAGTACTACAAGTACAA+AGG 0.669235 5_3:-20612597 Msa0804680:CDS
TCGGGGAAGAAATACTATGG+TGG 0.679997 5_3:-20612666 Msa0804680:CDS
TTCTCAATAGGTCAGAAGAG+GGG 0.698985 5_3:-20617525 Msa0804680:intron
GAAGAAGTTGACAATACTGG+AGG 0.702243 5_3:-20614163 Msa0804680:CDS
TTCGATTACCACCACCAGGG+AGG 0.721514 5_3:-20619406 Msa0804680:CDS
TGATGTTCTAGCTGACGACG+TGG 0.722306 5_3:-20618777 Msa0804680:CDS
GCCTTCGATTACCACCACCA+GGG 0.727082 5_3:-20619409 Msa0804680:CDS
TTGCTACTTACTGAACCCAG+GGG 0.730240 5_3:+20612890 None:intergenic
GGTGCCTGGGGAAATCTGAG+AGG 0.732683 5_3:-20616980 Msa0804680:CDS
CTTGCATACAGATTTCTCAG+TGG 0.734461 5_3:-20612462 Msa0804680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTACAGATAAAAATT+GGG - chr5_3:20616106-20616125 Msa0804680:intron 10.0%
!! ATTATAATTAGTTCAAATAA+CGG - chr5_3:20616944-20616963 Msa0804680:CDS 10.0%
!! AATAAATAAACTTAGAATAA+TGG + chr5_3:20619504-20619523 None:intergenic 10.0%
!!! TATATGGTATTAATTTTGTT+AGG - chr5_3:20613465-20613484 Msa0804680:intron 15.0%
!! CATTAGATAAATTATGTATT+TGG - chr5_3:20614339-20614358 Msa0804680:intron 15.0%
!!! GATTTAAAATTTTGTTGTTT+TGG - chr5_3:20614488-20614507 Msa0804680:intron 15.0%
!! CATAGAAAGAAAAAAAATAA+AGG + chr5_3:20614736-20614755 None:intergenic 15.0%
!! AAAGATAATAAGTATAATTG+TGG - chr5_3:20615874-20615893 Msa0804680:intron 15.0%
!! GTAACATGATAAAAAATAAT+AGG + chr5_3:20615941-20615960 None:intergenic 15.0%
!! AATTTAATTACCATATACTA+TGG + chr5_3:20616005-20616024 None:intergenic 15.0%
!! CATTTATTACAGATAAAAAT+TGG - chr5_3:20616105-20616124 Msa0804680:intron 15.0%
!!! TTTTTAAGTAATTTTTTCGA+GGG + chr5_3:20616701-20616720 None:intergenic 15.0%
!! TTTAAAAATTAAGAGAAGAA+GGG - chr5_3:20617552-20617571 Msa0804680:intron 15.0%
!!! TTAAATCTTAAAGCTTTATT+GGG - chr5_3:20617594-20617613 Msa0804680:intron 15.0%
!!! TTTAAATAGTGATCTTTTAA+TGG - chr5_3:20617746-20617765 Msa0804680:intron 15.0%
!!! ATCTTTTGCTTTATATAAAT+AGG + chr5_3:20618186-20618205 None:intergenic 15.0%
!!! GTTTATTTGTTATTGGTTTT+GGG - chr5_3:20612252-20612271 Msa0804680:exon 20.0%
!!! TTCTTTTGAATCATTGAATT+CGG - chr5_3:20612422-20612441 Msa0804680:CDS 20.0%
!!! TTTGTTTGAAATTGAGTAAT+GGG - chr5_3:20612606-20612625 Msa0804680:CDS 20.0%
!!! AGAAATTTTGAAGCTTTTTA+AGG - chr5_3:20612654-20612673 Msa0804680:CDS 20.0%
!!! GAAATTTTGAAGCTTTTTAA+GGG - chr5_3:20612655-20612674 Msa0804680:CDS 20.0%
!!! AAATTTTGAAGCTTTTTAAG+GGG - chr5_3:20612656-20612675 Msa0804680:CDS 20.0%
!!! TGTAACATTTTATGATACTT+CGG - chr5_3:20612792-20612811 Msa0804680:CDS 20.0%
!! AATTCAAGAGATAAATTTCA+AGG + chr5_3:20613085-20613104 None:intergenic 20.0%
!! AAAAAAACTAGAGATATTCA+GGG + chr5_3:20613166-20613185 None:intergenic 20.0%
!! AAAAAAAACTAGAGATATTC+AGG + chr5_3:20613167-20613186 None:intergenic 20.0%
!!! GTAAATTGTTTCTTGTAAAT+AGG - chr5_3:20614408-20614427 Msa0804680:intron 20.0%
!! CTAATCTTTATAATAAGTGT+AGG + chr5_3:20614782-20614801 None:intergenic 20.0%
!!! ATCATGAACTTGTTATTAAT+AGG + chr5_3:20615141-20615160 None:intergenic 20.0%
!!! ATTTAACTTGTTCAACTATT+AGG - chr5_3:20615159-20615178 Msa0804680:intron 20.0%
!!! AAACAAAATCTTTTATGCAT+TGG - chr5_3:20615447-20615466 Msa0804680:intron 20.0%
!!! GAATCTAACAATCTATTTTA+TGG - chr5_3:20615620-20615639 Msa0804680:intron 20.0%
!!! GTTTTCAAATTTTATTGAGT+AGG - chr5_3:20615658-20615677 Msa0804680:intron 20.0%
!!! AAATTTTATTGAGTAGGAAA+GGG - chr5_3:20615664-20615683 Msa0804680:intron 20.0%
!! TTATCTTTATCCAAAATTTC+AGG + chr5_3:20615862-20615881 None:intergenic 20.0%
!!! ATTTATTTCCTTTTCTCAAA+CGG - chr5_3:20616022-20616041 Msa0804680:intron 20.0%
!!! CTTTTTAAGTAATTTTTTCG+AGG + chr5_3:20616702-20616721 None:intergenic 20.0%
!! CTCGAAAAAATTACTTAAAA+AGG - chr5_3:20616700-20616719 Msa0804680:intron 20.0%
!!! CTTTAAAAATTAAGAGAAGA+AGG - chr5_3:20617551-20617570 Msa0804680:intron 20.0%
!!! GTTAAATCTTAAAGCTTTAT+TGG - chr5_3:20617593-20617612 Msa0804680:intron 20.0%
!! ACTATTTAAATCAATTTGAC+AGG + chr5_3:20617736-20617755 None:intergenic 20.0%
!!! AACAATATTTTGTGGAATTT+GGG - chr5_3:20617824-20617843 Msa0804680:intron 20.0%
!! TACAATTTACAAATGTTTAG+AGG - chr5_3:20618128-20618147 Msa0804680:intron 20.0%
!! ACAATTTACAAATGTTTAGA+GGG - chr5_3:20618129-20618148 Msa0804680:intron 20.0%
!! TAAATCACAAAAACTAACTA+AGG - chr5_3:20618206-20618225 Msa0804680:CDS 20.0%
!! ATAAAACTCACAATAAAGTA+AGG - chr5_3:20618318-20618337 Msa0804680:intron 20.0%
!! TAAAACTCACAATAAAGTAA+GGG - chr5_3:20618319-20618338 Msa0804680:intron 20.0%
!!! TATGTTTTGTGTTTATGTTT+AGG - chr5_3:20618375-20618394 Msa0804680:intron 20.0%
!! CTATTTATAAGAGACAAATT+AGG + chr5_3:20618411-20618430 None:intergenic 20.0%
!!! CTAATTTGTCTCTTATAAAT+AGG - chr5_3:20618409-20618428 Msa0804680:intron 20.0%
!! AAAGTTGAACATAAAAATCT+AGG + chr5_3:20618471-20618490 None:intergenic 20.0%
!!! TTTTATGTTCAACTTTCATA+TGG - chr5_3:20618475-20618494 Msa0804680:intron 20.0%
!! TTTATGTTCAACTTTCATAT+GGG - chr5_3:20618476-20618495 Msa0804680:intron 20.0%
!! AATACGATTGTAAGAATATT+TGG + chr5_3:20618600-20618619 None:intergenic 20.0%
!!! TGTAATTTTGCTTTTACATT+AGG - chr5_3:20618687-20618706 Msa0804680:CDS 20.0%
!!! ACTTGTATAATCTCATTTTA+GGG + chr5_3:20619020-20619039 None:intergenic 20.0%
!!! ATTAACTAAGTTTAGGTTAT+AGG + chr5_3:20619105-20619124 None:intergenic 20.0%
!! ATTCTCAATTAACTAAGTTT+AGG + chr5_3:20619112-20619131 None:intergenic 20.0%
!! TAGTTAATTGAGAATCAATT+TGG - chr5_3:20619117-20619136 Msa0804680:CDS 20.0%
!! AGTTAATTGAGAATCAATTT+GGG - chr5_3:20619118-20619137 Msa0804680:CDS 20.0%
!! TTTATAAGTAGAATTGTAGA+AGG + chr5_3:20619292-20619311 None:intergenic 20.0%
!! TATATCTAGTATATGTTACA+AGG - chr5_3:20619336-20619355 Msa0804680:intron 20.0%
!! AACAAAAACAAAAATCATAG+TGG - chr5_3:20620355-20620374 Msa0804680:CDS 20.0%
!! TTTCACTAATATAAGTAGAA+TGG - chr5_3:20620547-20620566 Msa0804680:five_prime_UTR 20.0%
!! TTCACTAATATAAGTAGAAT+GGG - chr5_3:20620548-20620567 Msa0804680:five_prime_UTR 20.0%
!! ATAGAAAATGAACATAAAAC+AGG + chr5_3:20620739-20620758 None:intergenic 20.0%
! TAAGAAGAAGATTTCAACAA+TGG - chr5_3:20612197-20612216 Msa0804680:three_prime_UTR 25.0%
!!! AGGTTTGGTTTATTTGTTAT+TGG - chr5_3:20612245-20612264 Msa0804680:three_prime_UTR 25.0%
!!! GGTTTATTTGTTATTGGTTT+TGG - chr5_3:20612251-20612270 Msa0804680:exon 25.0%
!! GTTTGTTTGAAATTGAGTAA+TGG - chr5_3:20612605-20612624 Msa0804680:CDS 25.0%
! AAGAGTCATATCATCATATA+TGG - chr5_3:20613449-20613468 Msa0804680:intron 25.0%
! AAAGGAAATCATGTTAATGT+TGG - chr5_3:20613503-20613522 Msa0804680:intron 25.0%
! TTCTTAACTTCAATATTGAC+AGG + chr5_3:20613722-20613741 None:intergenic 25.0%
! ATCAGTATTTGAATTACTCA+AGG + chr5_3:20613942-20613961 None:intergenic 25.0%
! TCAAATATCTTCAACTACTA+AGG - chr5_3:20614042-20614061 Msa0804680:intron 25.0%
!! ATTTTCAACAGATGTTAGAT+TGG + chr5_3:20614230-20614249 None:intergenic 25.0%
! AAAATGAGGTGTGAATATAT+TGG - chr5_3:20614245-20614264 Msa0804680:intron 25.0%
!! TAACATCATATCTTTTGCAA+GGG - chr5_3:20615092-20615111 Msa0804680:intron 25.0%
! CTATTAGGACCTTTAATTAA+TGG - chr5_3:20615174-20615193 Msa0804680:intron 25.0%
! GTGAAGATTCCATTAATTAA+AGG + chr5_3:20615186-20615205 None:intergenic 25.0%
! GTTTGAATATCTAATTCAGA+AGG - chr5_3:20615251-20615270 Msa0804680:intron 25.0%
! ATCTTAGATAATATCCCAAT+TGG + chr5_3:20615303-20615322 None:intergenic 25.0%
!! TTATCTAAGATACACAAGAT+TGG - chr5_3:20615312-20615331 Msa0804680:intron 25.0%
! TCATTCTTTATCAATGCTAT+TGG - chr5_3:20615405-20615424 Msa0804680:intron 25.0%
! TATGCAATATATTTGTCTCA+AGG - chr5_3:20615512-20615531 Msa0804680:intron 25.0%
!! CAAATTTTATTGAGTAGGAA+AGG - chr5_3:20615663-20615682 Msa0804680:intron 25.0%
! GAAACTTCAACATTTATGAA+AGG + chr5_3:20615703-20615722 None:intergenic 25.0%
! ATAATAAGTATAATTGTGGC+AGG - chr5_3:20615878-20615897 Msa0804680:intron 25.0%
!!! GTTTTATTAGCCATAGTATA+TGG - chr5_3:20615992-20616011 Msa0804680:intron 25.0%
! ACTATTATTCAAGAGAAAGT+AGG - chr5_3:20616072-20616091 Msa0804680:intron 25.0%
!! AAACAATTTCTCACCTTTTA+TGG - chr5_3:20616327-20616346 Msa0804680:intron 25.0%
!!! CTGTTTTTAAAAAATCATCG+TGG - chr5_3:20616666-20616685 Msa0804680:intron 25.0%
! AGATGTAAATATTCTGTCTT+TGG - chr5_3:20617010-20617029 Msa0804680:intron 25.0%
! TTGTACTAAATTGTATATCG+CGG - chr5_3:20617133-20617152 Msa0804680:intron 25.0%
! CACTTTAACTATCAAGTATT+TGG + chr5_3:20617377-20617396 None:intergenic 25.0%
!! CAAATACTTGATAGTTAAAG+TGG - chr5_3:20617375-20617394 Msa0804680:CDS 25.0%
!! GAAGTTTGAACAATATTTTG+TGG - chr5_3:20617816-20617835 Msa0804680:intron 25.0%
!! GAACAATATTTTGTGGAATT+TGG - chr5_3:20617823-20617842 Msa0804680:intron 25.0%
!! ACAATATTTTGTGGAATTTG+GGG - chr5_3:20617825-20617844 Msa0804680:intron 25.0%
! TCTAGTACAATACTAAAAGA+CGG + chr5_3:20618002-20618021 None:intergenic 25.0%
! ATTCTGATTTATGAACATTG+AGG - chr5_3:20618097-20618116 Msa0804680:intron 25.0%
! CAATTTACAAATGTTTAGAG+GGG - chr5_3:20618130-20618149 Msa0804680:intron 25.0%
! TTTATATAAATAGGACCACA+GGG + chr5_3:20618177-20618196 None:intergenic 25.0%
! AAAACTCACAATAAAGTAAG+GGG - chr5_3:20618320-20618339 Msa0804680:intron 25.0%
! AATCGTATTAAAACGATTTC+AGG - chr5_3:20618611-20618630 Msa0804680:CDS 25.0%
!!! TATCTTTTTTTTGTGTCTGA+AGG - chr5_3:20618975-20618994 Msa0804680:CDS 25.0%
!! TTGTATAATCTCATTTTAGG+GGG + chr5_3:20619018-20619037 None:intergenic 25.0%
!! CTTGTATAATCTCATTTTAG+GGG + chr5_3:20619019-20619038 None:intergenic 25.0%
!! CACTTGTATAATCTCATTTT+AGG + chr5_3:20619021-20619040 None:intergenic 25.0%
!! TGTTCAACTCATTCAATTTT+TGG - chr5_3:20619048-20619067 Msa0804680:CDS 25.0%
! GTTAATTGAGAATCAATTTG+GGG - chr5_3:20619119-20619138 Msa0804680:CDS 25.0%
! AATTCAGAAGTGATTTGAAT+AGG - chr5_3:20619173-20619192 Msa0804680:CDS 25.0%
! AAGTGATTTGAATAGGAAAT+TGG - chr5_3:20619180-20619199 Msa0804680:CDS 25.0%
! CTACAATTCTACTTATAAAC+AGG - chr5_3:20619293-20619312 Msa0804680:intron 25.0%
! TATATGTTACAAGGTTGTAA+GGG - chr5_3:20619345-20619364 Msa0804680:intron 25.0%
!!! AACTACAAACCACTTTTAAT+GGG + chr5_3:20619377-20619396 None:intergenic 25.0%
!!! AAACTACAAACCACTTTTAA+TGG + chr5_3:20619378-20619397 None:intergenic 25.0%
!!! TTTGTAGTTTTGTACTTTCT+AGG - chr5_3:20619388-20619407 Msa0804680:CDS 25.0%
!!! TTTTAAGACTCCTTTTGAAA+AGG - chr5_3:20619542-20619561 Msa0804680:intron 25.0%
!! GATTTTCTGTATGTAAATTG+AGG - chr5_3:20619610-20619629 Msa0804680:intron 25.0%
!! GACTTTTCAGATTACATTTT+TGG - chr5_3:20620178-20620197 Msa0804680:intron 25.0%
!!! TAGCAGTGACAAATTTTTTA+AGG + chr5_3:20620396-20620415 None:intergenic 25.0%
!!! TCAAACATCTGGAATATTTT+TGG - chr5_3:20620508-20620527 Msa0804680:CDS 25.0%
!! CAATCACCTCTAATAATTTT+TGG - chr5_3:20620684-20620703 Msa0804680:five_prime_UTR 25.0%
! ACTGTACCAAAAATTATTAG+AGG + chr5_3:20620693-20620712 None:intergenic 25.0%
TTATCCTATAAGGGCAAAAT+GGG + chr5_3:20612114-20612133 None:intergenic 30.0%
TTGAAATCTTCTTCTTATCC+TGG + chr5_3:20612194-20612213 None:intergenic 30.0%
!!! TTTGAGATTTTAGGGTTTCA+AGG - chr5_3:20612225-20612244 Msa0804680:three_prime_UTR 30.0%
TCAAAAGAAGCTGAATTTGA+AGG + chr5_3:20612411-20612430 None:intergenic 30.0%
! TGTTTTTCATGTTATGCATG+TGG - chr5_3:20612583-20612602 Msa0804680:CDS 30.0%
TTTCTATGTTCCTAACCTAA+TGG + chr5_3:20612639-20612658 None:intergenic 30.0%
!! AGCTTTTTAAGGGGATATAA+TGG - chr5_3:20612665-20612684 Msa0804680:CDS 30.0%
! AGGGGATATAATGGAAAATT+AGG - chr5_3:20612674-20612693 Msa0804680:CDS 30.0%
! GGGGATATAATGGAAAATTA+GGG - chr5_3:20612675-20612694 Msa0804680:CDS 30.0%
! AATGGAAAATTAGGGTATTC+CGG - chr5_3:20612683-20612702 Msa0804680:CDS 30.0%
AACAAACACACAAAACACTA+CGG + chr5_3:20612837-20612856 None:intergenic 30.0%
CACTTTGTGAAAATATCTCT+CGG + chr5_3:20612887-20612906 None:intergenic 30.0%
TGATGATATGACTCTTGAAA+CGG + chr5_3:20613445-20613464 None:intergenic 30.0%
TTTAGATTCCAAAGGAAATG+AGG + chr5_3:20613696-20613715 None:intergenic 30.0%
!! ACAGGATTTTTAGATTCCAA+AGG + chr5_3:20613704-20613723 None:intergenic 30.0%
GTATTTGAATTACTCAAGGA+AGG + chr5_3:20613938-20613957 None:intergenic 30.0%
AATATCTTCAACTACTAAGG+AGG - chr5_3:20614045-20614064 Msa0804680:intron 30.0%
! ATTGTCAGTTTTTGTAGACT+TGG + chr5_3:20614086-20614105 None:intergenic 30.0%
! CGAACATTTTGTTGAAGATT+TGG + chr5_3:20614142-20614161 None:intergenic 30.0%
CTTCAACAAAATGTTCGTAA+TGG - chr5_3:20614145-20614164 Msa0804680:CDS 30.0%
TCTAACATCTGTTGAAAATG+AGG - chr5_3:20614231-20614250 Msa0804680:intron 30.0%
! CTGTTTCTTGTAAAAAAGAC+CGG + chr5_3:20614304-20614323 None:intergenic 30.0%
!! ACAAGAAACAGTTGACTTTT+TGG - chr5_3:20614313-20614332 Msa0804680:intron 30.0%
! TTGTTTCTTGTAAATAGGAC+CGG - chr5_3:20614413-20614432 Msa0804680:intron 30.0%
!!! AATTTTGTTGTTTTGGCAGT+TGG - chr5_3:20614495-20614514 Msa0804680:intron 30.0%
!!! ATTTTGTTGTTTTGGCAGTT+GGG - chr5_3:20614496-20614515 Msa0804680:intron 30.0%
GGAACTTTATTGTTATGACA+AGG - chr5_3:20614540-20614559 Msa0804680:intron 30.0%
! TTAGGAAACATTCTAGTTGT+TGG - chr5_3:20614872-20614891 Msa0804680:intron 30.0%
TGCAAAAGATATGATGTTAG+AGG + chr5_3:20615091-20615110 None:intergenic 30.0%
! CTAACATCATATCTTTTGCA+AGG - chr5_3:20615091-20615110 Msa0804680:intron 30.0%
ATCTTCACAATGTTCTCAAT+AGG - chr5_3:20615198-20615217 Msa0804680:intron 30.0%
TAATTCAGAAGGCAAAAGAA+GGG - chr5_3:20615262-20615281 Msa0804680:intron 30.0%
! AAATGCAGATAAAGTGCTTA+AGG - chr5_3:20615734-20615753 Msa0804680:intron 30.0%
TGATGGAGATATTGAAACTT+TGG - chr5_3:20615810-20615829 Msa0804680:intron 30.0%
AGAAATAAATGTGACATGGA+AGG + chr5_3:20615916-20615935 None:intergenic 30.0%
GGAAAGAAATAAATGTGACA+TGG + chr5_3:20615920-20615939 None:intergenic 30.0%
! TTTTATCATGTTACTGTGCT+TGG - chr5_3:20615947-20615966 Msa0804680:intron 30.0%
ACAGATAAAAATTGGGATCT+AGG - chr5_3:20616113-20616132 Msa0804680:intron 30.0%
! GAAAGAAAGATATTTGTTGC+CGG + chr5_3:20616368-20616387 None:intergenic 30.0%
!! ATGATTTTAAGCTAGGTTGA+GGG - chr5_3:20616518-20616537 Msa0804680:intron 30.0%
!!! TTAAGTAATTTTTTCGAGGG+CGG + chr5_3:20616698-20616717 None:intergenic 30.0%
TGTATATACACACACTTAGT+GGG + chr5_3:20616914-20616933 None:intergenic 30.0%
ATGTATATACACACACTTAG+TGG + chr5_3:20616915-20616934 None:intergenic 30.0%
TGTATATCGCGGAATAAAAT+CGG - chr5_3:20617144-20617163 Msa0804680:intron 30.0%
ATGGTGATAAACTACTCAAA+GGG - chr5_3:20617520-20617539 Msa0804680:intron 30.0%
TTAAGATTTAACCTTCCAAG+AGG + chr5_3:20617585-20617604 None:intergenic 30.0%
!! AATCTTAAAGCTTTATTGGG+AGG - chr5_3:20617597-20617616 Msa0804680:intron 30.0%
!! ATCTTAAAGCTTTATTGGGA+GGG - chr5_3:20617598-20617617 Msa0804680:intron 30.0%
!!! ATGTTGCGGTCAATTTTTTA+AGG + chr5_3:20617640-20617659 None:intergenic 30.0%
CAAACTTCTAATAGATGTTG+CGG + chr5_3:20617654-20617673 None:intergenic 30.0%
! GTGATCTTTTAATGGTTTTC+CGG - chr5_3:20617754-20617773 Msa0804680:intron 30.0%
!! TTTATGACCTTAAGTTGACT+TGG - chr5_3:20618071-20618090 Msa0804680:intron 30.0%
GAATATACCAAGTCAACTTA+AGG + chr5_3:20618081-20618100 None:intergenic 30.0%
CTTTATATAAATAGGACCAC+AGG + chr5_3:20618178-20618197 None:intergenic 30.0%
TCTTATTAAATGAGCGTTAG+CGG + chr5_3:20618270-20618289 None:intergenic 30.0%
AAACTCACAATAAAGTAAGG+GGG - chr5_3:20618321-20618340 Msa0804680:intron 30.0%
TCTCTTATAAATAGGACTAG+AGG - chr5_3:20618417-20618436 Msa0804680:intron 30.0%
CTCTTATAAATAGGACTAGA+GGG - chr5_3:20618418-20618437 Msa0804680:intron 30.0%
!!! TGTTGTTTATTTTGACAGTC+TGG - chr5_3:20618727-20618746 Msa0804680:CDS 30.0%
ACTGCATAAAGACTGTAAAA+TGG + chr5_3:20618838-20618857 None:intergenic 30.0%
! ATTTTACAGTCTTTATGCAG+TGG - chr5_3:20618837-20618856 Msa0804680:CDS 30.0%
AAGCATTCATGATATCCAAA+TGG + chr5_3:20618867-20618886 None:intergenic 30.0%
! ATCATGAATGCTTCATTTTC+AGG - chr5_3:20618874-20618893 Msa0804680:CDS 30.0%
TCTTCACATAGCAAACATAA+TGG + chr5_3:20618900-20618919 None:intergenic 30.0%
!! TGTATAATCTCATTTTAGGG+GGG + chr5_3:20619017-20619036 None:intergenic 30.0%
! TAAGTTTAGGTTATAGGTTG+AGG + chr5_3:20619099-20619118 None:intergenic 30.0%
CTTTGGACAAACTTAAAATG+AGG + chr5_3:20619214-20619233 None:intergenic 30.0%
!!! CATTTTAAGTTTGTCCAAAG+AGG - chr5_3:20619214-20619233 Msa0804680:CDS 30.0%
GTATATGTTACAAGGTTGTA+AGG - chr5_3:20619344-20619363 Msa0804680:intron 30.0%
TTTGAAAAACAAAAGGCAGT+AGG + chr5_3:20619460-20619479 None:intergenic 30.0%
!! AGAAGGCTTTGAAAAACAAA+AGG + chr5_3:20619467-20619486 None:intergenic 30.0%
TGGATTGCAATTTCTTTAGA+AGG + chr5_3:20619484-20619503 None:intergenic 30.0%
ATGCTCATTTGAAAATTTCC+AGG - chr5_3:20619810-20619829 Msa0804680:intron 30.0%
AAGAATGGAGATTCAACTAT+CGG - chr5_3:20620050-20620069 Msa0804680:intron 30.0%
!!! TTCAGATTACATTTTTGGTG+AGG - chr5_3:20620183-20620202 Msa0804680:intron 30.0%
ACAAAAATCATAGTGGTAGA+TGG - chr5_3:20620362-20620381 Msa0804680:CDS 30.0%
CAAAAATCATAGTGGTAGAT+GGG - chr5_3:20620363-20620382 Msa0804680:CDS 30.0%
AAAAATCATAGTGGTAGATG+GGG - chr5_3:20620364-20620383 Msa0804680:CDS 30.0%
TTGAGATAGAATCAAACATC+TGG - chr5_3:20620497-20620516 Msa0804680:CDS 30.0%
AGAATTCTTGTGTACAAGTA+AGG - chr5_3:20620602-20620621 Msa0804680:five_prime_UTR 30.0%
GTTATCCTATAAGGGCAAAA+TGG + chr5_3:20612115-20612134 None:intergenic 35.0%
GCAAAAGGGTTATCCTATAA+GGG + chr5_3:20612123-20612142 None:intergenic 35.0%
AGCAAAAGGGTTATCCTATA+AGG + chr5_3:20612124-20612143 None:intergenic 35.0%
! GAAAAGTTGTGATTTTTCCG+TGG - chr5_3:20612153-20612172 Msa0804680:three_prime_UTR 35.0%
GAAGAAGATTTCAACAATGG+TGG - chr5_3:20612200-20612219 Msa0804680:three_prime_UTR 35.0%
!! ATGGTGGTGTTTGAGATTTT+AGG - chr5_3:20612216-20612235 Msa0804680:three_prime_UTR 35.0%
!! TGGTGGTGTTTGAGATTTTA+GGG - chr5_3:20612217-20612236 Msa0804680:three_prime_UTR 35.0%
!!! GATTTTAGGGTTTCAAGGTT+TGG - chr5_3:20612230-20612249 Msa0804680:three_prime_UTR 35.0%
!!! GTTATTGGTTTTGGGTTTTG+TGG - chr5_3:20612260-20612279 Msa0804680:exon 35.0%
TTGTGGTGATTCGTTATGTT+TGG - chr5_3:20612277-20612296 Msa0804680:CDS 35.0%
ACAAGATACTACTGCTTCTA+TGG - chr5_3:20612341-20612360 Msa0804680:CDS 35.0%
TTCCTGTTTCAGTTTCTCAT+GGG - chr5_3:20612445-20612464 Msa0804680:CDS 35.0%
!! GTTAGATACTGGTTTGTTTC+TGG - chr5_3:20612525-20612544 Msa0804680:CDS 35.0%
! CGAGAGATATTTTCACAAAG+TGG - chr5_3:20612885-20612904 Msa0804680:CDS 35.0%
ACTGAAGAGAGAAGAAACAT+AGG + chr5_3:20613194-20613213 None:intergenic 35.0%
GAATAACAACTAGAGATGTC+TGG + chr5_3:20613226-20613245 None:intergenic 35.0%
AAGCATGCTTTCTTGTAGTT+CGG - chr5_3:20613254-20613273 Msa0804680:intron 35.0%
GTAAGTGTCAAATTAGTCAC+TGG - chr5_3:20613277-20613296 Msa0804680:intron 35.0%
TCAGTATCAGGAACAGAATT+TGG - chr5_3:20613381-20613400 Msa0804680:intron 35.0%
!!! AGGTTTTTTGCAGAAAGCAA+AGG - chr5_3:20613485-20613504 Msa0804680:intron 35.0%
TTAGCAGTATTATCACTGAC+AGG + chr5_3:20613626-20613645 None:intergenic 35.0%
!!! TATGTGTCGGATTTAGCTTT+TGG + chr5_3:20613818-20613837 None:intergenic 35.0%
!! CACTTAGAAGTGTCTGTTAT+TGG + chr5_3:20613905-20613924 None:intergenic 35.0%
AAATTGACTATTACTCCCTC+CGG - chr5_3:20614282-20614301 Msa0804680:intron 35.0%
TTCTTGTAAAAAAGACCGGA+GGG + chr5_3:20614300-20614319 None:intergenic 35.0%
TTTCTTGTAAAAAAGACCGG+AGG + chr5_3:20614301-20614320 None:intergenic 35.0%
GATGATAATAATACTCCCTC+CGG + chr5_3:20614435-20614454 None:intergenic 35.0%
! CTTTCCTTATGAACTTTTCG+TGG - chr5_3:20614519-20614538 Msa0804680:intron 35.0%
AGTTCCACGAAAAGTTCATA+AGG + chr5_3:20614526-20614545 None:intergenic 35.0%
AAGGTGAAACTATTTCCCTT+TGG - chr5_3:20614559-20614578 Msa0804680:intron 35.0%
TTTATGTGATGTAACTGCTC+TGG - chr5_3:20614642-20614661 Msa0804680:intron 35.0%
TAAGAGGGATGAGAGATTAA+AGG - chr5_3:20614665-20614684 Msa0804680:intron 35.0%
AAGAGGGATGAGAGATTAAA+GGG - chr5_3:20614666-20614685 Msa0804680:intron 35.0%
TCGTGATGAACGAAATACTT+GGG - chr5_3:20614812-20614831 Msa0804680:intron 35.0%
GAAATACTTGGGAATCAAGT+AGG - chr5_3:20614823-20614842 Msa0804680:intron 35.0%
CTAATTCAGAAGGCAAAAGA+AGG - chr5_3:20615261-20615280 Msa0804680:intron 35.0%
AATATCCCAATTGGAGAAAG+TGG + chr5_3:20615294-20615313 None:intergenic 35.0%
! AAGATGCGCATGAATTTTTG+AGG - chr5_3:20615361-20615380 Msa0804680:intron 35.0%
!!! TTGTTTTGAAGTAGCAGCTA+AGG + chr5_3:20615433-20615452 None:intergenic 35.0%
!! GCATTGGCTTTATGAGAAAT+TGG - chr5_3:20615463-20615482 Msa0804680:intron 35.0%
TATATTTGTCTCAAGGAAGC+CGG - chr5_3:20615519-20615538 Msa0804680:intron 35.0%
!! AGAGTTGTTTCTTCTGTCAA+AGG + chr5_3:20615555-20615574 None:intergenic 35.0%
ACAGAAGAAACAACTCTCAT+TGG - chr5_3:20615558-20615577 Msa0804680:intron 35.0%
! ACTCTCATTGGATACACTTT+TGG - chr5_3:20615570-20615589 Msa0804680:intron 35.0%
TTTATTGAGTAGGAAAGGGA+TGG - chr5_3:20615668-20615687 Msa0804680:intron 35.0%
TTATTGAGTAGGAAAGGGAT+GGG - chr5_3:20615669-20615688 Msa0804680:intron 35.0%
GATCTTACTGTTGAGATTGA+TGG - chr5_3:20615793-20615812 Msa0804680:intron 35.0%
TGGAGATATTGAAACTTTGG+AGG - chr5_3:20615813-20615832 Msa0804680:intron 35.0%
! AGATATTGAAACTTTGGAGG+AGG - chr5_3:20615816-20615835 Msa0804680:intron 35.0%
! ATTTACAGCGCCTGAAATTT+TGG - chr5_3:20615849-20615868 Msa0804680:intron 35.0%
TAAATGTGACATGGAAGGAA+AGG + chr5_3:20615911-20615930 None:intergenic 35.0%
! TCCTTTTCTCAAACGGTATA+TGG - chr5_3:20616029-20616048 Msa0804680:intron 35.0%
TCCATATACCGTTTGAGAAA+AGG + chr5_3:20616033-20616052 None:intergenic 35.0%
AACTCAGATTTGGCCATAAA+AGG + chr5_3:20616343-20616362 None:intergenic 35.0%
! GTGAGTTTTCTTCATCTTTG+TGG - chr5_3:20616463-20616482 Msa0804680:intron 35.0%
! GCTTCTCATGATTTTAAGCT+AGG - chr5_3:20616511-20616530 Msa0804680:intron 35.0%
! CATGATTTTAAGCTAGGTTG+AGG - chr5_3:20616517-20616536 Msa0804680:intron 35.0%
! AGGGAGTAAAAGACAACTTT+TGG - chr5_3:20616537-20616556 Msa0804680:intron 35.0%
! GGGAGTAAAAGACAACTTTT+GGG - chr5_3:20616538-20616557 Msa0804680:intron 35.0%
!!! AAGCGGTTTTAAAGAATCGT+GGG + chr5_3:20616612-20616631 None:intergenic 35.0%
!! AAAGGCACTATCAATCAAAC+TGG - chr5_3:20616718-20616737 Msa0804680:intron 35.0%
GATATAGCACTATTGTGTAG+CGG + chr5_3:20617085-20617104 None:intergenic 35.0%
GCTATTTAACAACACTGCTT+TGG - chr5_3:20617214-20617233 Msa0804680:CDS 35.0%
!! AACCAAAGCATTTTCCTACT+AGG + chr5_3:20617301-20617320 None:intergenic 35.0%
GATAGTTAAAGTGGTCAATG+CGG - chr5_3:20617384-20617403 Msa0804680:CDS 35.0%
TTATTCATCCGTTGCATACA+TGG - chr5_3:20617501-20617520 Msa0804680:CDS 35.0%
GTTTATCACCATGTATGCAA+CGG + chr5_3:20617512-20617531 None:intergenic 35.0%
CATGGTGATAAACTACTCAA+AGG - chr5_3:20617519-20617538 Msa0804680:intron 35.0%
TGGTGATAAACTACTCAAAG+GGG - chr5_3:20617521-20617540 Msa0804680:intron 35.0%
!! TCTTAAAGCTTTATTGGGAG+GGG - chr5_3:20617599-20617618 Msa0804680:intron 35.0%
!! GTTTTTCAGATGTGAATTCG+TGG - chr5_3:20617679-20617698 Msa0804680:CDS 35.0%
CTTCAACAATTGATTGCTGT+TGG - chr5_3:20617926-20617945 Msa0804680:intron 35.0%
TAAAACCCATGGGACAAAAT+TGG + chr5_3:20618055-20618074 None:intergenic 35.0%
CTTAAGGTCATAAAACCCAT+GGG + chr5_3:20618065-20618084 None:intergenic 35.0%
ACTTAAGGTCATAAAACCCA+TGG + chr5_3:20618066-20618085 None:intergenic 35.0%
!!! GGTATTTTTGGGAAAGAAGT+TGG + chr5_3:20618249-20618268 None:intergenic 35.0%
TTAATAAGACCCACTTGCAT+AGG - chr5_3:20618281-20618300 Msa0804680:intron 35.0%
TAATAAGACCCACTTGCATA+GGG - chr5_3:20618282-20618301 Msa0804680:intron 35.0%
CAGTATTGTCAACTTCTTCT+TGG + chr5_3:20618571-20618590 None:intergenic 35.0%
CAAGAAGAAGTTGACAATAC+TGG - chr5_3:20618569-20618588 Msa0804680:CDS 35.0%
TGCTATGTGAAGAACATTCA+AGG - chr5_3:20618907-20618926 Msa0804680:CDS 35.0%
TGAAGAACATTCAAGGAGAA+TGG - chr5_3:20618914-20618933 Msa0804680:CDS 35.0%
AATTGAGAATCAATTTGGGG+AGG - chr5_3:20619122-20619141 Msa0804680:CDS 35.0%
ATTGAGAATCAATTTGGGGA+GGG - chr5_3:20619123-20619142 Msa0804680:CDS 35.0%
CAAACTTAAAATGAGGACTC+AGG + chr5_3:20619207-20619226 None:intergenic 35.0%
TTAAGTTTGTCCAAAGAGGA+AGG - chr5_3:20619218-20619237 Msa0804680:CDS 35.0%
! GGGTTTTTACCCATTAAAAG+TGG - chr5_3:20619365-20619384 Msa0804680:CDS 35.0%
TTTCTAGGCTTAAGAAGCTA+TGG - chr5_3:20619403-20619422 Msa0804680:CDS 35.0%
! ATTTGCCAGTCCTTTTCAAA+AGG + chr5_3:20619555-20619574 None:intergenic 35.0%
CATACATGCTTCTTTATGCA+AGG - chr5_3:20619696-20619715 Msa0804680:intron 35.0%
CTTGAACTTTCCAGTTGAAA+AGG + chr5_3:20619876-20619895 None:intergenic 35.0%
TTTCAACTGGAAAGTTCAAG+AGG - chr5_3:20619876-20619895 Msa0804680:intron 35.0%
ATTGCCAAAGGAATCATCAA+CGG + chr5_3:20620014-20620033 None:intergenic 35.0%
GTATACAGATTCATTGCCAA+AGG + chr5_3:20620026-20620045 None:intergenic 35.0%
AATCTGTATACCCAGAAGAA+TGG - chr5_3:20620035-20620054 Msa0804680:intron 35.0%
AGTTGAATCTCCATTCTTCT+GGG + chr5_3:20620048-20620067 None:intergenic 35.0%
TAGTTGAATCTCCATTCTTC+TGG + chr5_3:20620049-20620068 None:intergenic 35.0%
AGAATGGAGATTCAACTATC+GGG - chr5_3:20620051-20620070 Msa0804680:intron 35.0%
TTGCAGTACTACAAGTACAA+AGG - chr5_3:20620138-20620157 Msa0804680:intron 35.0%
TACTACAAGTACAAAGGACT+CGG - chr5_3:20620144-20620163 Msa0804680:intron 35.0%
!!! ATTACATTTTTGGTGAGGCA+GGG - chr5_3:20620188-20620207 Msa0804680:intron 35.0%
AGTTGGAAGAAATTCCATAC+TGG + chr5_3:20620228-20620247 None:intergenic 35.0%
GTATGGAATTTCTTCCAACT+CGG - chr5_3:20620228-20620247 Msa0804680:CDS 35.0%
! ATCTGTATGCAAGGTATCAT+AGG + chr5_3:20620266-20620285 None:intergenic 35.0%
AAGAATTCTTGCGCTAATAC+TGG + chr5_3:20620591-20620610 None:intergenic 35.0%
!! CAAGCTTCAGTTTCTAGTGA+CGG - chr5_3:20612034-20612053 Msa0804680:three_prime_UTR 40.0%
AATGGGAAAGATAGTTGCGT+CGG + chr5_3:20612097-20612116 None:intergenic 40.0%
! CTTTCCCATTTTGCCCTTAT+AGG - chr5_3:20612107-20612126 Msa0804680:three_prime_UTR 40.0%
TTTCCTCGCATAGAGCAAAA+GGG + chr5_3:20612137-20612156 None:intergenic 40.0%
! TTTTCCTCGCATAGAGCAAA+AGG + chr5_3:20612138-20612157 None:intergenic 40.0%
AGAAGAGAGAAGAGGTTATG+AGG - chr5_3:20612313-20612332 Msa0804680:CDS 40.0%
TACTGCTTCTATGGCTCATA+TGG - chr5_3:20612350-20612369 Msa0804680:CDS 40.0%
ATGGCTCATATGGAAGCTTA+TGG - chr5_3:20612360-20612379 Msa0804680:CDS 40.0%
GTTCCTGTTTCAGTTTCTCA+TGG - chr5_3:20612444-20612463 Msa0804680:CDS 40.0%
TACCCATGAGAAACTGAAAC+AGG + chr5_3:20612450-20612469 None:intergenic 40.0%
!! TTGAAATTGAGTAATGGGCG+TGG - chr5_3:20612611-20612630 Msa0804680:CDS 40.0%
! AATTAGGGTATTCCGGATTG+AGG - chr5_3:20612690-20612709 Msa0804680:CDS 40.0%
! ATTAGGGTATTCCGGATTGA+GGG - chr5_3:20612691-20612710 Msa0804680:CDS 40.0%
! GGAGGTCTAAGTCTATCTTT+TGG - chr5_3:20612718-20612737 Msa0804680:CDS 40.0%
! TAGCCAATGATATTTGCTGC+TGG - chr5_3:20612922-20612941 Msa0804680:intron 40.0%
! ATTTCTTGCCCCATGTTTTC+CGG + chr5_3:20612948-20612967 None:intergenic 40.0%
! TTTGACTCGTGATATTGTCG+TGG - chr5_3:20613031-20613050 Msa0804680:intron 40.0%
! TTGACTCGTGATATTGTCGT+GGG - chr5_3:20613032-20613051 Msa0804680:intron 40.0%
AGCATGCTTTCTTGTAGTTC+GGG - chr5_3:20613255-20613274 Msa0804680:intron 40.0%
CAAATTAGTCACTGGAGACA+AGG - chr5_3:20613285-20613304 Msa0804680:intron 40.0%
ACGACGAGAATGTTACATCT+AGG - chr5_3:20613355-20613374 Msa0804680:intron 40.0%
CGACGAGAATGTTACATCTA+GGG - chr5_3:20613356-20613375 Msa0804680:intron 40.0%
! GGAACAGAATTTGGTCTTCA+TGG - chr5_3:20613390-20613409 Msa0804680:intron 40.0%
!! AGCAACAGAAGCATTAATGC+TGG + chr5_3:20613549-20613568 None:intergenic 40.0%
ATCCGACACATATCATGATG+AGG - chr5_3:20613826-20613845 Msa0804680:CDS 40.0%
TGCCTCATCATGATATGTGT+CGG + chr5_3:20613831-20613850 None:intergenic 40.0%
! TCATGATGAGGCATCAAAGT+TGG - chr5_3:20613838-20613857 Msa0804680:CDS 40.0%
! CATGATGAGGCATCAAAGTT+GGG - chr5_3:20613839-20613858 Msa0804680:CDS 40.0%
TAACAGACACTTCTAAGTGC+AGG - chr5_3:20613906-20613925 Msa0804680:CDS 40.0%
!! AACGCTAACTTTTGAAGGCA+AGG + chr5_3:20614116-20614135 None:intergenic 40.0%
! GGAACAACGCTAACTTTTGA+AGG + chr5_3:20614121-20614140 None:intergenic 40.0%
! CTTTTGAGCTTCTAAACTGC+TGG + chr5_3:20614198-20614217 None:intergenic 40.0%
TTTCTTGTAAATAGGACCGG+AGG - chr5_3:20614416-20614435 Msa0804680:intron 40.0%
TTCTTGTAAATAGGACCGGA+GGG - chr5_3:20614417-20614436 Msa0804680:intron 40.0%
ATGTAACTGCTCTGGTAAGA+GGG - chr5_3:20614650-20614669 Msa0804680:intron 40.0%
AGAGGGATGAGAGATTAAAG+GGG - chr5_3:20614667-20614686 Msa0804680:intron 40.0%
AGAGATTAAAGGGGATAGTG+AGG - chr5_3:20614676-20614695 Msa0804680:intron 40.0%
CTCGTGATGAACGAAATACT+TGG - chr5_3:20614811-20614830 Msa0804680:intron 40.0%
TTCCGACAAAAGTAGCTTGA+AGG + chr5_3:20614849-20614868 None:intergenic 40.0%
!! CTACTTTTGTCGGAACGTTT+AGG - chr5_3:20614854-20614873 Msa0804680:intron 40.0%
! GAAACATTCTAGTTGTTGGC+TGG - chr5_3:20614876-20614895 Msa0804680:intron 40.0%
! GAGGCATTTCATTAGCAAGA+GGG + chr5_3:20615017-20615036 None:intergenic 40.0%
!! AGAGGCATTTCATTAGCAAG+AGG + chr5_3:20615018-20615037 None:intergenic 40.0%
TGTTCTCAATAGGTCAGAAG+AGG - chr5_3:20615208-20615227 Msa0804680:intron 40.0%
GTTCTCAATAGGTCAGAAGA+GGG - chr5_3:20615209-20615228 Msa0804680:intron 40.0%
TTCTCAATAGGTCAGAAGAG+GGG - chr5_3:20615210-20615229 Msa0804680:intron 40.0%
ACTTCTCCACTTTCTCCAAT+TGG - chr5_3:20615285-20615304 Msa0804680:intron 40.0%
CTTCTCCACTTTCTCCAATT+GGG - chr5_3:20615286-20615305 Msa0804680:intron 40.0%
CACAAGATTGGAAGTCATCT+TGG - chr5_3:20615324-20615343 Msa0804680:intron 40.0%
ATTGGAAGTCATCTTGGACA+TGG - chr5_3:20615330-20615349 Msa0804680:intron 40.0%
TTGGAAGTCATCTTGGACAT+GGG - chr5_3:20615331-20615350 Msa0804680:intron 40.0%
TGAGAAATTGGTCCATCAAC+AGG - chr5_3:20615475-20615494 Msa0804680:intron 40.0%
GAGAAATTGGTCCATCAACA+GGG - chr5_3:20615476-20615495 Msa0804680:intron 40.0%
AGAAATTGGTCCATCAACAG+GGG - chr5_3:20615477-20615496 Msa0804680:intron 40.0%
TGTCAAAGGACTTGATAGAC+CGG + chr5_3:20615541-20615560 None:intergenic 40.0%
! CTCATTGGATACACTTTTGG+AGG - chr5_3:20615573-20615592 Msa0804680:intron 40.0%
TGGAGGATATCTACGATCTA+AGG - chr5_3:20615590-20615609 Msa0804680:intron 40.0%
! ATAAAGTGCTTAAGGTGCCT+GGG - chr5_3:20615742-20615761 Msa0804680:intron 40.0%
! TGAGAGGTATGAGAGAATGA+TGG - chr5_3:20615771-20615790 Msa0804680:intron 40.0%
! ATGGCCAAATCTGAGTTTTC+CGG - chr5_3:20616346-20616365 Msa0804680:intron 40.0%
!! TTTTAAAGAATCGTGGGGGT+GGG + chr5_3:20616606-20616625 None:intergenic 40.0%
!!! AGCGGTTTTAAAGAATCGTG+GGG + chr5_3:20616611-20616630 None:intergenic 40.0%
!!! GAAGCGGTTTTAAAGAATCG+TGG + chr5_3:20616613-20616632 None:intergenic 40.0%
!! TCTTTAAAACCGCTTCCTTC+CGG - chr5_3:20616617-20616636 Msa0804680:intron 40.0%
!!! AGTTTTTTCCCTGTCCAGAT+GGG + chr5_3:20616648-20616667 None:intergenic 40.0%
TACACACACTTAGTGGGATA+AGG + chr5_3:20616908-20616927 None:intergenic 40.0%
TTATCCTGCTATCCCAATCT+CGG - chr5_3:20616975-20616994 Msa0804680:CDS 40.0%
TGGACCAATGTTGTCAATTG+CGG - chr5_3:20617030-20617049 Msa0804680:intron 40.0%
CTATCCGCAATTGACAACAT+TGG + chr5_3:20617037-20617056 None:intergenic 40.0%
ATGTTGTCAATTGCGGATAG+TGG - chr5_3:20617037-20617056 Msa0804680:intron 40.0%
!! TTGCGGATAGTGGAAAATAG+TGG - chr5_3:20617047-20617066 Msa0804680:intron 40.0%
ATAGATGCGCTATACCACTA+TGG + chr5_3:20617190-20617209 None:intergenic 40.0%
! ATTTTCCTACTAGGTGGAGT+TGG + chr5_3:20617292-20617311 None:intergenic 40.0%
!! CAAAGCATTTTCCTACTAGG+TGG + chr5_3:20617298-20617317 None:intergenic 40.0%
CACCTAGTAGGAAAATGCTT+TGG - chr5_3:20617296-20617315 Msa0804680:intron 40.0%
!! AAACTACTCAAAGGGGTGTT+AGG - chr5_3:20617528-20617547 Msa0804680:intron 40.0%
AAGAAGGGTCATAAACCTCT+TGG - chr5_3:20617567-20617586 Msa0804680:intron 40.0%
GCATGACTTCAAAGAGAATC+CGG + chr5_3:20617776-20617795 None:intergenic 40.0%
TCTCATTTGTCTCATTGCAG+TGG + chr5_3:20617798-20617817 None:intergenic 40.0%
GACAAAATTGGCATTGTGCT+TGG + chr5_3:20618043-20618062 None:intergenic 40.0%
! ACAATGCCAATTTTGTCCCA+TGG - chr5_3:20618046-20618065 Msa0804680:intron 40.0%
! CAATGCCAATTTTGTCCCAT+GGG - chr5_3:20618047-20618066 Msa0804680:intron 40.0%
! TGGTTCTATATTACTCCCTG+TGG - chr5_3:20618159-20618178 Msa0804680:CDS 40.0%
! TGAGCGTTAGCGGTATTTTT+GGG + chr5_3:20618260-20618279 None:intergenic 40.0%
! ATGAGCGTTAGCGGTATTTT+TGG + chr5_3:20618261-20618280 None:intergenic 40.0%
CAATAAAGTAAGGGGGCAAA+AGG - chr5_3:20618328-20618347 Msa0804680:intron 40.0%
GAAGAAGTTGACAATACTGG+AGG - chr5_3:20618572-20618591 Msa0804680:CDS 40.0%
TCATGTATGGAGTCATATCC+AGG + chr5_3:20618795-20618814 None:intergenic 40.0%
GATATGACTCCATACATGAG+TGG - chr5_3:20618796-20618815 Msa0804680:CDS 40.0%
TCCATACATGAGTGGAAGAA+AGG - chr5_3:20618804-20618823 Msa0804680:CDS 40.0%
TCCTTTCTTCCACTCATGTA+TGG + chr5_3:20618808-20618827 None:intergenic 40.0%
ACATTCAAGGAGAATGGTTC+AGG - chr5_3:20618920-20618939 Msa0804680:CDS 40.0%
!! ATAATCTCATTTTAGGGGGG+AGG + chr5_3:20619014-20619033 None:intergenic 40.0%
CAAATGTTCTCCTTCCTCTT+TGG + chr5_3:20619231-20619250 None:intergenic 40.0%
!! AGACTCCTTTTGAAAAGGAC+TGG - chr5_3:20619547-20619566 Msa0804680:intron 40.0%
TGACATTTGTGCTTCTCTTC+AGG - chr5_3:20619634-20619653 Msa0804680:intron 40.0%
AAGACTCTTGACAATTCGAC+AGG + chr5_3:20619665-20619684 None:intergenic 40.0%
! ATTGCTACTTACTGAACCCA+GGG + chr5_3:20619849-20619868 None:intergenic 40.0%
! AGCAATGCAACCTTTTCAAC+TGG - chr5_3:20619863-20619882 Msa0804680:intron 40.0%
AAAGTTCAAGAGGAGAAGCT+TGG - chr5_3:20619886-20619905 Msa0804680:intron 40.0%
AGAATCAGCATTTGTAGCCA+TGG + chr5_3:20619948-20619967 None:intergenic 40.0%
!! AATGCCGTTGATGATTCCTT+TGG - chr5_3:20620007-20620026 Msa0804680:intron 40.0%
GAATGGAGATTCAACTATCG+GGG - chr5_3:20620052-20620071 Msa0804680:intron 40.0%
CTATCGGGGAAGAAATACTA+TGG - chr5_3:20620066-20620085 Msa0804680:intron 40.0%
!!! GATTACATTTTTGGTGAGGC+AGG - chr5_3:20620187-20620206 Msa0804680:intron 40.0%
CACTGAGAAATCTGTATGCA+AGG + chr5_3:20620275-20620294 None:intergenic 40.0%
CTTGCATACAGATTTCTCAG+TGG - chr5_3:20620273-20620292 Msa0804680:CDS 40.0%
! GTACAGCAGAACTTTTGTCA+TGG + chr5_3:20620423-20620442 None:intergenic 40.0%
CGTCACTAGAAACTGAAGCT+TGG + chr5_3:20612036-20612055 None:intergenic 45.0%
! TAACCCTTTTGCTCTATGCG+AGG - chr5_3:20612131-20612150 Msa0804680:three_prime_UTR 45.0%
! TTTTTCCGTGGATCCTGTGT+TGG - chr5_3:20612165-20612184 Msa0804680:three_prime_UTR 45.0%
! TTTTCCGTGGATCCTGTGTT+GGG - chr5_3:20612166-20612185 Msa0804680:three_prime_UTR 45.0%
TGCTGAAGAGAAGAGAGAAG+AGG - chr5_3:20612305-20612324 Msa0804680:CDS 45.0%
GAGAGAAGAGGTTATGAGGT+TGG - chr5_3:20612317-20612336 Msa0804680:CDS 45.0%
GCTGCAAAGCTGTTAGATAC+TGG - chr5_3:20612514-20612533 Msa0804680:CDS 45.0%
! GTATTCCGGATTGAGGGTTT+TGG - chr5_3:20612697-20612716 Msa0804680:CDS 45.0%
! CAATGATATTTGCTGCTGGC+CGG - chr5_3:20612926-20612945 Msa0804680:intron 45.0%
GGAAAACATGGGGCAAAAGT+GGG - chr5_3:20612980-20612999 Msa0804680:intron 45.0%
GAAAACATGGGGCAAAAGTG+GGG - chr5_3:20612981-20613000 Msa0804680:intron 45.0%
TGACTCGTGATATTGTCGTG+GGG - chr5_3:20613033-20613052 Msa0804680:intron 45.0%
AAGGTCACAAGGACGAATGT+TGG - chr5_3:20613304-20613323 Msa0804680:intron 45.0%
! ACATCTAGGGCATCAGTATC+AGG - chr5_3:20613369-20613388 Msa0804680:intron 45.0%
ATGAGTCATGAGTCTCGTGA+CGG + chr5_3:20613595-20613614 None:intergenic 45.0%
GTTGCACTCCTCATTTCCTT+TGG - chr5_3:20613685-20613704 Msa0804680:intron 45.0%
AGCAACACTACTGATGAGAC+TGG - chr5_3:20613776-20613795 Msa0804680:intron 45.0%
TGGAAGAATCGCATTTGTCC+AGG - chr5_3:20613978-20613997 Msa0804680:CDS 45.0%
TGTCCAGGTACAAAGAAGCA+CGG - chr5_3:20613993-20614012 Msa0804680:CDS 45.0%
CCACAGTTTGTAAGGCCAAA+GGG + chr5_3:20614577-20614596 None:intergenic 45.0%
!! CCTTTGGCCTTACAAACTGT+GGG - chr5_3:20614575-20614594 Msa0804680:intron 45.0%
ACCTGTTCCCACAGTTTGTA+AGG + chr5_3:20614585-20614604 None:intergenic 45.0%
GATGTAACTGCTCTGGTAAG+AGG - chr5_3:20614649-20614668 Msa0804680:intron 45.0%
!!! GGCCTTCAAGCTACTTTTGT+CGG - chr5_3:20614844-20614863 Msa0804680:intron 45.0%
TAGCATAACAGCTGCAGTAG+AGG + chr5_3:20615036-20615055 None:intergenic 45.0%
TAATGCAGCACTCCAATGCT+TGG - chr5_3:20615054-20615073 Msa0804680:intron 45.0%
GGTACTTGCATCGTTTCGAA+TGG + chr5_3:20615120-20615139 None:intergenic 45.0%
! GATAAAGTGCTTAAGGTGCC+TGG - chr5_3:20615741-20615760 Msa0804680:intron 45.0%
! TAAAGTGCTTAAGGTGCCTG+GGG - chr5_3:20615743-20615762 Msa0804680:intron 45.0%
GTTGCCGGAAAACTCAGATT+TGG + chr5_3:20616353-20616372 None:intergenic 45.0%
! AGACAACTTTTGGGCCCTTA+AGG - chr5_3:20616547-20616566 Msa0804680:intron 45.0%
! TTTTCTGCAGTGGGCCTTAA+GGG + chr5_3:20616564-20616583 None:intergenic 45.0%
! TTTTTCTGCAGTGGGCCTTA+AGG + chr5_3:20616565-20616584 None:intergenic 45.0%
AAGGCCCACTGCAGAAAAAT+AGG - chr5_3:20616566-20616585 Msa0804680:intron 45.0%
AGGCCCACTGCAGAAAAATA+GGG - chr5_3:20616567-20616586 Msa0804680:intron 45.0%
!! GCTCCCTATTTTTCTGCAGT+GGG + chr5_3:20616573-20616592 None:intergenic 45.0%
!! AGCTCCCTATTTTTCTGCAG+TGG + chr5_3:20616574-20616593 None:intergenic 45.0%
TTTAAAGAATCGTGGGGGTG+GGG + chr5_3:20616605-20616624 None:intergenic 45.0%
!!! GTTTTAAAGAATCGTGGGGG+TGG + chr5_3:20616607-20616626 None:intergenic 45.0%
!!! GCGGTTTTAAAGAATCGTGG+GGG + chr5_3:20616610-20616629 None:intergenic 45.0%
!!! CAGTTTTTTCCCTGTCCAGA+TGG + chr5_3:20616649-20616668 None:intergenic 45.0%
ACACTTAGTGGGATAAGGCT+TGG + chr5_3:20616903-20616922 None:intergenic 45.0%
GTGCTATATCGTCACTGCAA+CGG - chr5_3:20617095-20617114 Msa0804680:intron 45.0%
! CACTATGGCATAGCGGAATT+TGG + chr5_3:20617175-20617194 None:intergenic 45.0%
CAAATTCCGCTATGCCATAG+TGG - chr5_3:20617173-20617192 Msa0804680:CDS 45.0%
GCTATACCACTATGGCATAG+CGG + chr5_3:20617182-20617201 None:intergenic 45.0%
CATGACTCGTGTCATGTGTA+AGG + chr5_3:20617241-20617260 None:intergenic 45.0%
CTTACACATGACACGAGTCA+TGG - chr5_3:20617239-20617258 Msa0804680:CDS 45.0%
! TGACACGAGTCATGGCTTTT+TGG - chr5_3:20617247-20617266 Msa0804680:intron 45.0%
CTTAACCAACTCCACCTAGT+AGG - chr5_3:20617284-20617303 Msa0804680:intron 45.0%
AGGGTCATAAACCTCTTGGA+AGG - chr5_3:20617571-20617590 Msa0804680:intron 45.0%
TTCTATCAAAGCCCGGAAGT+AGG + chr5_3:20617712-20617731 None:intergenic 45.0%
GACAGGATTCTATCAAAGCC+CGG + chr5_3:20617719-20617738 None:intergenic 45.0%
AATTTGGGGAAAGAATGCCG+TGG - chr5_3:20617839-20617858 Msa0804680:intron 45.0%
ATGCCGTGGAATCTTGTGAT+TGG - chr5_3:20617853-20617872 Msa0804680:intron 45.0%
CAGCCAATCACAAGATTCCA+CGG + chr5_3:20617859-20617878 None:intergenic 45.0%
! AATGTTTAGAGGGGCACACA+TGG - chr5_3:20618139-20618158 Msa0804680:intron 45.0%
TCCATCTTCCCTATGCAAGT+GGG + chr5_3:20618293-20618312 None:intergenic 45.0%
GAGTCATATCCAGGACTTCA+GGG + chr5_3:20618786-20618805 None:intergenic 45.0%
TTATGCAGTGGTCGTCCATT+TGG - chr5_3:20618849-20618868 Msa0804680:CDS 45.0%
! TTGCTACTTACTGAACCCAG+GGG + chr5_3:20619848-20619867 None:intergenic 45.0%
! CATTGCTACTTACTGAACCC+AGG + chr5_3:20619850-20619869 None:intergenic 45.0%
CGTCTTAGAAACAGCAGGAA+TGG + chr5_3:20619915-20619934 None:intergenic 45.0%
!! TTCCTGCTGTTTCTAAGACG+CGG - chr5_3:20619915-20619934 Msa0804680:intron 45.0%
AGGAATCATCAACGGCATTC+CGG + chr5_3:20620006-20620025 None:intergenic 45.0%
TCGGGGAAGAAATACTATGG+TGG - chr5_3:20620069-20620088 Msa0804680:intron 45.0%
CAGTGGACAATGATGCTGAT+AGG - chr5_3:20620290-20620309 Msa0804680:CDS 45.0%
TGGACAATGATGCTGATAGG+AGG - chr5_3:20620293-20620312 Msa0804680:CDS 45.0%
CTTTATCTTCCGAGTCTTGC+TGG + chr5_3:20620321-20620340 None:intergenic 45.0%
!! TTATATTATTATCTTATTAT+TGG + chr5_3:20616793-20616812 None:intergenic 5.0%
!! AAAATAATATATTTATCAAA+TGG + chr5_3:20617889-20617908 None:intergenic 5.0%
!!! GATAAATATATTATTTTATT+AGG - chr5_3:20617892-20617911 Msa0804680:intron 5.0%
TTTCCGTGGATCCTGTGTTG+GGG - chr5_3:20612167-20612186 Msa0804680:three_prime_UTR 50.0%
!! TTCCGGATTGAGGGTTTTGG+AGG - chr5_3:20612700-20612719 Msa0804680:CDS 50.0%
GACCTCCAAAACCCTCAATC+CGG + chr5_3:20612705-20612724 None:intergenic 50.0%
CGGCCAGCAGCAAATATCAT+TGG + chr5_3:20612928-20612947 None:intergenic 50.0%
GGGAAAACATGGGGCAAAAG+TGG - chr5_3:20612979-20612998 Msa0804680:intron 50.0%
TCACTGGAGACAAGGTCACA+AGG - chr5_3:20613293-20613312 Msa0804680:intron 50.0%
CAACACAGTTCCGTCGTTGT+CGG + chr5_3:20613669-20613688 None:intergenic 50.0%
! GATGAGGCATCAAAGTTGGG+TGG - chr5_3:20613842-20613861 Msa0804680:CDS 50.0%
! TGATGTTCTAGCTGACGACG+TGG - chr5_3:20613958-20613977 Msa0804680:CDS 50.0%
TCTCCGTGCTTCTTTGTACC+TGG + chr5_3:20613999-20614018 None:intergenic 50.0%
!! CCCTTTGGCCTTACAAACTG+TGG - chr5_3:20614574-20614593 Msa0804680:intron 50.0%
CCCACAGTTTGTAAGGCCAA+AGG + chr5_3:20614578-20614597 None:intergenic 50.0%
GCCTTACAAACTGTGGGAAC+AGG - chr5_3:20614581-20614600 Msa0804680:intron 50.0%
GCTGAGTATACGCCAAGCAT+TGG + chr5_3:20615069-20615088 None:intergenic 50.0%
CAATAGGTCAGAAGAGGGGA+TGG - chr5_3:20615214-20615233 Msa0804680:intron 50.0%
TCATCTTGGACATGGGAGAG+AGG - chr5_3:20615338-20615357 Msa0804680:intron 50.0%
CATACCTCTCAGATTTCCCC+AGG + chr5_3:20615762-20615781 None:intergenic 50.0%
! GAAACTTTGGAGGAGGCTCT+TGG - chr5_3:20615823-20615842 Msa0804680:intron 50.0%
TTTCATCCCCTCTTCCAGAG+CGG + chr5_3:20616294-20616313 None:intergenic 50.0%
TTAAAGAATCGTGGGGGTGG+GGG + chr5_3:20616604-20616623 None:intergenic 50.0%
CTGCTATCCCAATCTCGGAT+CGG - chr5_3:20616980-20616999 Msa0804680:CDS 50.0%
AAACCAGCCGATCCGAGATT+GGG + chr5_3:20616990-20617009 None:intergenic 50.0%
TAAACCAGCCGATCCGAGAT+TGG + chr5_3:20616991-20617010 None:intergenic 50.0%
!! CGTGGACTAGTACCTACTTC+CGG - chr5_3:20617697-20617716 Msa0804680:intron 50.0%
!! GTGGACTAGTACCTACTTCC+GGG - chr5_3:20617698-20617717 Msa0804680:intron 50.0%
ACCCACTTGCATAGGGAAGA+TGG - chr5_3:20618289-20618308 Msa0804680:intron 50.0%
GTCCATCTTCCCTATGCAAG+TGG + chr5_3:20618294-20618313 None:intergenic 50.0%
AGTTCAGTTCCCTGAAGTCC+TGG - chr5_3:20618774-20618793 Msa0804680:CDS 50.0%
GGAGTCATATCCAGGACTTC+AGG + chr5_3:20618787-20618806 None:intergenic 50.0%
GTTCAGGACTGATGACAGCA+GGG - chr5_3:20618936-20618955 Msa0804680:CDS 50.0%
GCAAGGTAATGATGCTGCAG+AGG - chr5_3:20619713-20619732 Msa0804680:intron 50.0%
! CTTACTGAACCCAGGGGTTT+TGG + chr5_3:20619842-20619861 None:intergenic 50.0%
TAAGACGCGGTCGAATTCCA+TGG - chr5_3:20619928-20619947 Msa0804680:intron 50.0%
CTTATCCTGGTCCCCAACAC+AGG + chr5_3:20612181-20612200 None:intergenic 55.0%
CGAGCACAACGCATGGTAGT+AGG + chr5_3:20612495-20612514 None:intergenic 55.0%
TTTGCAGCGAGCACAACGCA+TGG + chr5_3:20612502-20612521 None:intergenic 55.0%
!! GTAATGGGCGTGGTGCCATT+AGG - chr5_3:20612621-20612640 Msa0804680:CDS 55.0%
TTGCTGCTGGCCGGAAAACA+TGG - chr5_3:20612935-20612954 Msa0804680:intron 55.0%
TGCTGCTGGCCGGAAAACAT+GGG - chr5_3:20612936-20612955 Msa0804680:intron 55.0%
TGGGGCAAGAAATTTGCCGC+TGG - chr5_3:20612955-20612974 Msa0804680:intron 55.0%
GGCAAGAAATTTGCCGCTGG+CGG - chr5_3:20612958-20612977 Msa0804680:intron 55.0%
GCAAGAAATTTGCCGCTGGC+GGG - chr5_3:20612959-20612978 Msa0804680:intron 55.0%
GCCTTCGATTACCACCACCA+GGG - chr5_3:20613326-20613345 Msa0804680:intron 55.0%
!! TCCCTGGTGGTGGTAATCGA+AGG + chr5_3:20613330-20613349 None:intergenic 55.0%
TTCGATTACCACCACCAGGG+AGG - chr5_3:20613329-20613348 Msa0804680:intron 55.0%
ATTCTCGTCGTTGACCTCCC+TGG + chr5_3:20613346-20613365 None:intergenic 55.0%
GTAGCTTCCACCGACAACGA+CGG - chr5_3:20613656-20613675 Msa0804680:intron 55.0%
CTCAACTGCACCCCTGTTGA+TGG + chr5_3:20615490-20615509 None:intergenic 55.0%
TAGCGCTCCCACTCTTGATG+CGG + chr5_3:20616211-20616230 None:intergenic 55.0%
TGTGCAGTTTGCGCCCATAG+CGG - chr5_3:20616258-20616277 Msa0804680:intron 55.0%
CCAGATCTGCTCGTTCTGTG+CGG - chr5_3:20616392-20616411 Msa0804680:intron 55.0%
TGTGGCTGCTATGCTGTGTG+CGG - chr5_3:20616427-20616446 Msa0804680:intron 55.0%
TTGTGGCTGCTCGTTGTGTG+TGG - chr5_3:20616480-20616499 Msa0804680:intron 55.0%
TAAAGAATCGTGGGGGTGGG+GGG + chr5_3:20616603-20616622 None:intergenic 55.0%
TGGGCAAATCCGGAAGGAAG+CGG + chr5_3:20616629-20616648 None:intergenic 55.0%
TCCTTCCGGATTTGCCCATC+TGG - chr5_3:20616631-20616650 Msa0804680:intron 55.0%
TCCAGATGGGCAAATCCGGA+AGG + chr5_3:20616635-20616654 None:intergenic 55.0%
CCTGTCCAGATGGGCAAATC+CGG + chr5_3:20616639-20616658 None:intergenic 55.0%
CGGATTTGCCCATCTGGACA+GGG - chr5_3:20616637-20616656 Msa0804680:intron 55.0%
CGATCCGAGATTGGGATAGC+AGG + chr5_3:20616982-20617001 None:intergenic 55.0%
TATCCCAATCTCGGATCGGC+TGG - chr5_3:20616984-20617003 Msa0804680:CDS 55.0%
GGTTCAGGACTGATGACAGC+AGG - chr5_3:20618935-20618954 Msa0804680:CDS 55.0%
!! CTCATTTTAGGGGGGAGGAG+TGG + chr5_3:20619009-20619028 None:intergenic 55.0%
AGGCACTCTCCAAAACCCCT+GGG - chr5_3:20619830-20619849 Msa0804680:intron 55.0%
GACCGCGTCTTAGAAACAGC+AGG + chr5_3:20619920-20619939 None:intergenic 55.0%
CTGTCCCTGCTTCTGCTGTA+CGG + chr5_3:20619975-20619994 None:intergenic 55.0%
TTGGTGAGGCAGGGTCCAAT+TGG - chr5_3:20620197-20620216 Msa0804680:intron 55.0%
TCCAATTGGCACGGCCAGTA+TGG - chr5_3:20620211-20620230 Msa0804680:intron 55.0%
TCCATACTGGCCGTGCCAAT+TGG + chr5_3:20620215-20620234 None:intergenic 55.0%
GGAAGAAGATGCAGCCGAGT+TGG + chr5_3:20620245-20620264 None:intergenic 55.0%
TAGGAGGCTCCAGCAAGACT+CGG - chr5_3:20620309-20620328 Msa0804680:CDS 55.0%
GGTCCCCAACACAGGATCCA+CGG + chr5_3:20612173-20612192 None:intergenic 60.0%
TGGATCCTGTGTTGGGGACC+AGG - chr5_3:20612173-20612192 Msa0804680:three_prime_UTR 60.0%
!! GGGCGTGGTGCCATTAGGTT+AGG - chr5_3:20612626-20612645 Msa0804680:CDS 60.0%
GCTGCTGGCCGGAAAACATG+GGG - chr5_3:20612937-20612956 Msa0804680:intron 60.0%
TTGCCGCTGGCGGGAAAACA+TGG - chr5_3:20612968-20612987 Msa0804680:intron 60.0%
TGCCGCTGGCGGGAAAACAT+GGG - chr5_3:20612969-20612988 Msa0804680:intron 60.0%
GGCCTTCGATTACCACCACC+AGG - chr5_3:20613325-20613344 Msa0804680:intron 60.0%
CACAGTTCCGTCGTTGTCGG+TGG + chr5_3:20613666-20613685 None:intergenic 60.0%
GGTGCCTGGGGAAATCTGAG+AGG - chr5_3:20615755-20615774 Msa0804680:intron 60.0%
TTGCGCCCCGCATCAAGAGT+GGG - chr5_3:20616201-20616220 Msa0804680:intron 60.0%
AGCGCTCCCACTCTTGATGC+GGG + chr5_3:20616210-20616229 None:intergenic 60.0%
!! AAGAGTGGGAGCGCTACACC+AGG - chr5_3:20616215-20616234 Msa0804680:intron 60.0%
CGCTACACCAGGCTTCTCAG+CGG - chr5_3:20616226-20616245 Msa0804680:intron 60.0%
GCTACACCAGGCTTCTCAGC+GGG - chr5_3:20616227-20616246 Msa0804680:intron 60.0%
ACCAGGCTTCTCAGCGGGAA+TGG - chr5_3:20616232-20616251 Msa0804680:intron 60.0%
!! ACAAGGGCCGCTCTGGAAGA+GGG - chr5_3:20616284-20616303 Msa0804680:intron 60.0%
CCGCACAGAACGAGCAGATC+TGG + chr5_3:20616395-20616414 None:intergenic 60.0%
!! GTGCGGCTGCTTGTTGTCTG+TGG - chr5_3:20616409-20616428 Msa0804680:intron 60.0%
AAAGAATCGTGGGGGTGGGG+GGG + chr5_3:20616602-20616621 None:intergenic 60.0%
CCGGATTTGCCCATCTGGAC+AGG - chr5_3:20616636-20616655 Msa0804680:intron 60.0%
!!! CAGGGGTTTTGGAGAGTGCC+TGG + chr5_3:20619831-20619850 None:intergenic 60.0%
CAGGCACTCTCCAAAACCCC+TGG - chr5_3:20619829-20619848 Msa0804680:intron 60.0%
TCCCTCCGTACAGCAGAAGC+AGG - chr5_3:20619967-20619986 Msa0804680:intron 60.0%
CCCTGCTTCTGCTGTACGGA+GGG + chr5_3:20619971-20619990 None:intergenic 60.0%
CCCTCCGTACAGCAGAAGCA+GGG - chr5_3:20619968-20619987 Msa0804680:intron 60.0%
TCCCTGCTTCTGCTGTACGG+AGG + chr5_3:20619972-20619991 None:intergenic 60.0%
AGCAGGGACAGCACTCTCAC+CGG - chr5_3:20619984-20620003 Msa0804680:intron 60.0%
GAGGCAGGGTCCAATTGGCA+CGG - chr5_3:20620202-20620221 Msa0804680:intron 60.0%
GCCGCTGGCGGGAAAACATG+GGG - chr5_3:20612970-20612989 Msa0804680:intron 65.0%
! GCCCCATGTTTTCCCGCCAG+CGG + chr5_3:20612974-20612993 None:intergenic 65.0%
GTCGTTGACCTCCCTGGTGG+TGG + chr5_3:20613340-20613359 None:intergenic 65.0%
CTCGTCGTTGACCTCCCTGG+TGG + chr5_3:20613343-20613362 None:intergenic 65.0%
CTCTTGATGCGGGGCGCAAC+TGG + chr5_3:20616200-20616219 None:intergenic 65.0%
GTTGCGCCCCGCATCAAGAG+TGG - chr5_3:20616200-20616219 Msa0804680:intron 65.0%
GCGCTCCCACTCTTGATGCG+GGG + chr5_3:20616209-20616228 None:intergenic 65.0%
GCCATTCCCGCTGAGAAGCC+TGG + chr5_3:20616236-20616255 None:intergenic 65.0%
!! CACAAGGGCCGCTCTGGAAG+AGG - chr5_3:20616283-20616302 Msa0804680:intron 65.0%
!! CAAGGGCCGCTCTGGAAGAG+GGG - chr5_3:20616285-20616304 Msa0804680:intron 65.0%
GCGGCGCAACGGAGTGATCG+TGG + chr5_3:20616151-20616170 None:intergenic 70.0%
CGATCACTCCGTTGCGCCGC+AGG - chr5_3:20616151-20616170 Msa0804680:intron 70.0%
TCCGTTGCGCCGCAGGACAG+TGG - chr5_3:20616158-20616177 Msa0804680:intron 70.0%
GCCACTGTCCTGCGGCGCAA+CGG + chr5_3:20616162-20616181 None:intergenic 70.0%
TTGCGCCGCAGGACAGTGGC+TGG - chr5_3:20616162-20616181 Msa0804680:intron 70.0%
! GGCGCAACTGGCTTCACCGG+CGG + chr5_3:20616188-20616207 None:intergenic 70.0%
! CGGGGCGCAACTGGCTTCAC+CGG + chr5_3:20616191-20616210 None:intergenic 70.0%
TGCGCCCATAGCGGCGCACA+AGG - chr5_3:20616267-20616286 Msa0804680:intron 70.0%
GCGCCCATAGCGGCGCACAA+GGG - chr5_3:20616268-20616287 Msa0804680:intron 70.0%
CGGCCCTTGTGCGCCGCTAT+GGG + chr5_3:20616274-20616293 None:intergenic 70.0%
GGCGGCCAGCCACTGTCCTG+CGG + chr5_3:20616170-20616189 None:intergenic 75.0%
! GCAGGACAGTGGCTGGCCGC+CGG - chr5_3:20616169-20616188 Msa0804680:intron 75.0%
GCGGCCCTTGTGCGCCGCTA+TGG + chr5_3:20616275-20616294 None:intergenic 75.0%
! GCGGCGCACAAGGGCCGCTC+TGG - chr5_3:20616277-20616296 Msa0804680:intron 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 20611994 20620763 20611994 ID=Msa0804680;Name=Msa0804680
chr5_3 mRNA 20611994 20620763 20611994 ID=Msa0804680-mRNA-1;Parent=Msa0804680;Name=Msa0804680-mRNA-1;_AED=0.05;_eAED=0.05;_QI=222|0.90|0.91|1|0.81|0.91|12|274|941
chr5_3 exon 20611994 20612925 20611994 ID=Msa0804680-mRNA-1:exon:8334;Parent=Msa0804680-mRNA-1
chr5_3 exon 20613040 20613101 20613040 ID=Msa0804680-mRNA-1:exon:8333;Parent=Msa0804680-mRNA-1
chr5_3 exon 20613800 20614012 20613800 ID=Msa0804680-mRNA-1:exon:8332;Parent=Msa0804680-mRNA-1
chr5_3 exon 20614143 20614209 20614143 ID=Msa0804680-mRNA-1:exon:8331;Parent=Msa0804680-mRNA-1
chr5_3 exon 20616858 20617015 20616858 ID=Msa0804680-mRNA-1:exon:8330;Parent=Msa0804680-mRNA-1
chr5_3 exon 20617146 20617260 20617146 ID=Msa0804680-mRNA-1:exon:8329;Parent=Msa0804680-mRNA-1
chr5_3 exon 20617375 20617537 20617375 ID=Msa0804680-mRNA-1:exon:8328;Parent=Msa0804680-mRNA-1
chr5_3 exon 20617627 20617712 20617627 ID=Msa0804680-mRNA-1:exon:8327;Parent=Msa0804680-mRNA-1
chr5_3 exon 20618155 20618243 20618155 ID=Msa0804680-mRNA-1:exon:8326;Parent=Msa0804680-mRNA-1
chr5_3 exon 20618505 20619259 20618505 ID=Msa0804680-mRNA-1:exon:8325;Parent=Msa0804680-mRNA-1
chr5_3 exon 20619346 20619485 20619346 ID=Msa0804680-mRNA-1:exon:8324;Parent=Msa0804680-mRNA-1
chr5_3 exon 20620222 20620763 20620222 ID=Msa0804680-mRNA-1:exon:8323;Parent=Msa0804680-mRNA-1
chr5_3 five_prime_UTR 20620542 20620763 20620542 ID=Msa0804680-mRNA-1:five_prime_utr;Parent=Msa0804680-mRNA-1
chr5_3 CDS 20620222 20620541 20620222 ID=Msa0804680-mRNA-1:cds;Parent=Msa0804680-mRNA-1
chr5_3 CDS 20619346 20619485 20619346 ID=Msa0804680-mRNA-1:cds;Parent=Msa0804680-mRNA-1
chr5_3 CDS 20618505 20619259 20618505 ID=Msa0804680-mRNA-1:cds;Parent=Msa0804680-mRNA-1
chr5_3 CDS 20618155 20618243 20618155 ID=Msa0804680-mRNA-1:cds;Parent=Msa0804680-mRNA-1
chr5_3 CDS 20617627 20617712 20617627 ID=Msa0804680-mRNA-1:cds;Parent=Msa0804680-mRNA-1
chr5_3 CDS 20617375 20617537 20617375 ID=Msa0804680-mRNA-1:cds;Parent=Msa0804680-mRNA-1
chr5_3 CDS 20617146 20617260 20617146 ID=Msa0804680-mRNA-1:cds;Parent=Msa0804680-mRNA-1
chr5_3 CDS 20616858 20617015 20616858 ID=Msa0804680-mRNA-1:cds;Parent=Msa0804680-mRNA-1
chr5_3 CDS 20614143 20614209 20614143 ID=Msa0804680-mRNA-1:cds;Parent=Msa0804680-mRNA-1
chr5_3 CDS 20613800 20614012 20613800 ID=Msa0804680-mRNA-1:cds;Parent=Msa0804680-mRNA-1
chr5_3 CDS 20613040 20613101 20613040 ID=Msa0804680-mRNA-1:cds;Parent=Msa0804680-mRNA-1
chr5_3 CDS 20612268 20612925 20612268 ID=Msa0804680-mRNA-1:cds;Parent=Msa0804680-mRNA-1
chr5_3 three_prime_UTR 20611994 20612267 20611994 ID=Msa0804680-mRNA-1:three_prime_utr;Parent=Msa0804680-mRNA-1
Gene Sequence

>Msa0804680

ATGGTGGTGTTTGAGATTTTAGGGTTTCAAGGTTTGGTTTATTTGTTATTGGTTTTGGGTTTTGTGGTGATTCGTTATGTTTGGAGAAATGCTGAAGAGAAGAGAGAAGAGGTTATGAGGTTGGTACAAGATACTACTGCTTCTATGGCTCATATGGAAGCTTATGGTGATTCAGATGAAATTTCATTTTCACCTTCAAATTCAGCTTCTTTTGAATCATTGAATTCGGTTCCTGTTTCAGTTTCTCATGGGTATCAATGTGCTGTTTGTTATTCTCCTACTACCATGCGTTGTGCTCGCTGCAAAGCTGTTAGATACTGTTCGGGTAAGTGTCAAATTAGTCACTGGAGACAAGGTCACAAGGACGAATGTTGGCCTTCGATTACCACCACCAGGGAGGTCAACGACGAGAATGTTACATCTAGGGCATCAGTATCAGGAACAGAATTTGGTCTTCATGAAAGCAAAGGAAATCATGTTAATGTTGGATCTTACAACGATTCGCATTCCAGCATTAATGCTTCTGTTGCTGCAAGAGAATCATTTGATGATAACCGTCACGAGACTCATGACTCATTTACAAAACCTGTCAGTGATAATACTGCTAACGACACATGTGTAGCTTCCACCGACAACGACGGAACTGTGTTGCACTCCTCATTTCCTTTGGAATCTAAAAATCCTGTCAATATTGAAGTTAAGAATTCTAGTTCAAGTAAAAGAAGCAAGAAAAAGTCTAGCAACACTACTGATGAGACTGGATTTGAATCAAAAGTTCCAAAAGCTAAATCCGACACATATCATGATGAGGCATCAAAGTTGGGTGGTCATCAACACAAAAGAAGAGTTTCATTTGTTGAAAAACCAATAACAGACACTTCTAAGTGCAGGACTGTGCCTTCCTTGAGTAATTCAAATACTGATGTTCTAGCTGACGACGTGGAAGAATCGCATTTGTCCAGGTACAAAGAAGCACGGAGATCATCATCATCTAGTTCTCGTGATCAAATATCTTCAACTACTAAGGAGGATTTGATTTCACATTCCAAGTCTACAAAAACTGACAATTATCATGCCTTGCCTTCAAAAGTTAGCGTTGTTCCAAATCTTCAACAAAATGTTCGTAATGGTTTGAAAACATCAATGCAGAAAGTTGTCCAGCAGTTTAGAAGCTCAAAAGAGTCAAGATCCAATCTAACATCTGTTGAAAATGAGTTGGGCTTTCCTTATGAACTTTTCGTGGAACTTTATTGTTATGACAAGGTGAAACTATTTCCCTTTGGCCTTACAAACTGTGGGAACAGCTGTTATGCTAATGCAGCACTCCAATGCTTGGCGTATACTCAGCCTCTAACATCATATCTTTTGCAAGGGTTCCATTCGAAACGATGTCAGAAGAGGGGATGGTGTTTTATGTGCGAGTTTGAATATCTAATTCAGAAGGCAAAAGAAGGGACTTCTCCACTTTCTCCAATTGGGATATTATCTAAGATACACAAGATTGGAAGTCATCTTGGACATGGGAGAGAGGAAGATGCGCATGAATTTTTGAGGGGTGCAGTTGAGACTATGCAATATATTTGTCTCAAGGAAGCCGGTCTATCAAGTCCTTTGACAGAAGAAACAACTCTCATTGGATACACTTTTGGAGGATATCTACGATCTAAGATAAAGTGCTTAAGGTGCCTGGGGAAATCTGAGAGGTATGAGAGAATGATGGATCTTACTGTTGAGATTGATGGAGATATTGAAACTTTGGAGGAGGCTCTTGGACAATTTACAGCGCCTGAAATTTTGGATAAAGATAATAAGTATAATTGTGGCAGATGTAAATCGTACGAGAAAGCCAAGAAGAAGTTGACAATACTGGAGGCACCAAATATTCTTACAATCTCTGGTAACTTTGAAAAGTTGAATAAGTCAGTTCAGTTCCCTGAAGTCCTGGATATGACTCCATACATGAGTGGAAGAAAGGATAAATCTCCATTTTACAGTCTTTATGCAGTGGTCGTCCATTTGGATATCATGAATGCTTCATTTTCAGGCCATTATGTTTGCTATGTGAAGAACATTCAAGGAGAATGGTTCAGGACTGATGACAGCAGGGTAGAACCTGTCGAATTGTCAAGAGTCTTATCAGAAAGCGCATACATGCTTCTTTATGCAAGGCACTCTCCAAAACCCCTGGGTTCAGTAAGTAGCAATGCAACCTTTTCAACTGGAAAGTTCAAGAGGAGAAGCTTGGAAGCCATTCCTGCTGTTTCTAAGACGCGGTCGAATTCCATGGCTACAAATGCTGATTCTCCCTCCGTACAGCAGAAGCAGGGACAGCACTCTCACCGGAATGCCGTTGATGATTCCTTTGGCAATGAATCTGTATACCCAGAAGAATGGAGATTCAACTATCGGGGAAGAAATACTATGGTGGATTCTGCTAGCGAAAGCTCACTTTTCAGCTCTTCTGATGCAAGCTCTTGCAGTACTACAAGTACAAAGGACTCGGCTAGTACTGCTGACTTTTCAGATTACATTTTTGGTGAGGCAGGGTCCAATTGGCACGGCCAGTATGGAATTTCTTCCAACTCGGCTGCATCTTCTTCCTATGATACCTTGCATACAGATTTCTCAGTGGACAATGATGCTGATAGGAGGCTCCAGCAAGACTCGGAAGATAAAGCAATTTTGTATGCTAACAAAAACAAAAATCATAGTGGTAGATGGGGAATTGACCTTAAAAAATTTGTCACTGCTAAGCACCATGACAAAAGTTCTGCTGTACATGTGAGAAGAACAAGTAGAGATGCATCAGCTCAAACATTTTATTGA
Protein sequence

>Msa0804680

MVVFEILGFQGLVYLLLVLGFVVIRYVWRNAEEKREEVMRLVQDTTASMAHMEAYGDSDEISFSPSNSASFESLNSVPVSVSHGYQCAVCYSPTTMRCARCKAVRYCSGKCQISHWRQGHKDECWPSITTTREVNDENVTSRASVSGTEFGLHESKGNHVNVGSYNDSHSSINASVAARESFDDNRHETHDSFTKPVSDNTANDTCVASTDNDGTVLHSSFPLESKNPVNIEVKNSSSSKRSKKKSSNTTDETGFESKVPKAKSDTYHDEASKLGGHQHKRRVSFVEKPITDTSKCRTVPSLSNSNTDVLADDVEESHLSRYKEARRSSSSSSRDQISSTTKEDLISHSKSTKTDNYHALPSKVSVVPNLQQNVRNGLKTSMQKVVQQFRSSKESRSNLTSVENELGFPYELFVELYCYDKVKLFPFGLTNCGNSCYANAALQCLAYTQPLTSYLLQGFHSKRCQKRGWCFMCEFEYLIQKAKEGTSPLSPIGILSKIHKIGSHLGHGREEDAHEFLRGAVETMQYICLKEAGLSSPLTEETTLIGYTFGGYLRSKIKCLRCLGKSERYERMMDLTVEIDGDIETLEEALGQFTAPEILDKDNKYNCGRCKSYEKAKKKLTILEAPNILTISGNFEKLNKSVQFPEVLDMTPYMSGRKDKSPFYSLYAVVVHLDIMNASFSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSESAYMLLYARHSPKPLGSVSSNATFSTGKFKRRSLEAIPAVSKTRSNSMATNADSPSVQQKQGQHSHRNAVDDSFGNESVYPEEWRFNYRGRNTMVDSASESSLFSSSDASSCSTTSTKDSASTADFSDYIFGEAGSNWHGQYGISSNSAASSSYDTLHTDFSVDNDADRRLQQDSEDKAILYANKNKNHSGRWGIDLKKFVTAKHHDKSSAVHVRRTSRDASAQTFY*