Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699360 | XP_039685236.1 | 95.405 | 370 | 10 | 1 | 1 | 370 | 1 | 363 | 0.0 | 713 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699360 | sp|F4IP06|SWC2_ARATH | 57.865 | 356 | 134 | 4 | 10 | 358 | 5 | 351 | 4.86e-125 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699360 | A0A396GMM6 | 95.405 | 370 | 10 | 1 | 1 | 370 | 1 | 363 | 0.0 | 713 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031820 | Msa0699360 | 0.806939 | 6.446953e-50 | -8.615850e-47 |
| Msa0047980 | Msa0699360 | 0.805103 | 1.569082e-49 | -8.615850e-47 |
| Msa0073670 | Msa0699360 | 0.804249 | 2.365701e-49 | -8.615850e-47 |
| Msa0642720 | Msa0699360 | 0.823877 | 1.092973e-53 | -8.615850e-47 |
| Msa0655560 | Msa0699360 | 0.800579 | 1.348874e-48 | -8.615850e-47 |
| Msa0679100 | Msa0699360 | 0.802337 | 5.886669e-49 | -8.615850e-47 |
| Msa0687230 | Msa0699360 | 0.823930 | 1.062129e-53 | -8.615850e-47 |
| Msa0687630 | Msa0699360 | 0.802513 | 5.412973e-49 | -8.615850e-47 |
| Msa0699360 | Msa0699810 | 0.804034 | 2.622370e-49 | -8.615850e-47 |
| Msa0699360 | Msa0721230 | 0.801214 | 1.000864e-48 | -8.615850e-47 |
| Msa0699360 | Msa0734960 | 0.808617 | 2.836691e-50 | -8.615850e-47 |
| Msa0699360 | Msa0753460 | 0.800153 | 1.647049e-48 | -8.615850e-47 |
| Msa0699360 | Msa0788770 | 0.818764 | 1.653552e-52 | -8.615850e-47 |
| Msa0699360 | Msa0797750 | 0.805716 | 1.167014e-49 | -8.615850e-47 |
| Msa0699360 | Msa0824640 | 0.820958 | 5.210406e-53 | -8.615850e-47 |
| Msa0699360 | Msa0832700 | 0.809697 | 1.664414e-50 | -8.615850e-47 |
| Msa0699360 | Msa0864010 | 0.817756 | 2.796440e-52 | -8.615850e-47 |
| Msa0699360 | Msa0897400 | 0.811131 | 8.163243e-51 | -8.615850e-47 |
| Msa0699360 | Msa0943170 | 0.801250 | 9.837870e-49 | -8.615850e-47 |
| Msa0699360 | Msa0963020 | 0.815391 | 9.470061e-52 | -8.615850e-47 |
| Msa0699360 | Msa0980940 | 0.811263 | 7.641565e-51 | -8.615850e-47 |
| Msa0699360 | Msa1131560 | 0.807011 | 6.225416e-50 | -8.615850e-47 |
| Msa0699360 | Msa1184370 | 0.809494 | 1.840931e-50 | -8.615850e-47 |
| Msa0699360 | Msa1185130 | 0.815278 | 1.003206e-51 | -8.615850e-47 |
| Msa0699360 | Msa1188560 | 0.804801 | 1.814839e-49 | -8.615850e-47 |
| Msa0699360 | Msa1198530 | 0.816358 | 5.762667e-52 | -8.615850e-47 |
| Msa0699360 | Msa1224840 | 0.801806 | 7.569203e-49 | -8.615850e-47 |
| Msa0699360 | Msa1227690 | 0.827402 | 1.596292e-54 | -8.615850e-47 |
| Msa0699360 | Msa1294840 | 0.808304 | 3.307070e-50 | -8.615850e-47 |
| Msa0699360 | Msa1299360 | 0.800605 | 1.332799e-48 | -8.615850e-47 |
| Msa0699360 | Msa1329450 | 0.805698 | 1.177058e-49 | -8.615850e-47 |
| Msa0699360 | Msa1381120 | 0.813200 | 2.887059e-51 | -8.615850e-47 |
| Msa0699360 | Msa1438640 | 0.800631 | 1.316235e-48 | -8.615850e-47 |
| Msa0126770 | Msa0699360 | 0.807837 | 4.158479e-50 | -8.615850e-47 |
| Msa0144360 | Msa0699360 | 0.810020 | 1.418696e-50 | -8.615850e-47 |
| Msa0171850 | Msa0699360 | 0.807663 | 4.527602e-50 | -8.615850e-47 |
| Msa0185400 | Msa0699360 | 0.835092 | 2.052038e-56 | -8.615850e-47 |
| Msa0215360 | Msa0699360 | 0.806547 | 7.800095e-50 | -8.615850e-47 |
| Msa0378980 | Msa0699360 | 0.817499 | 3.195712e-52 | -8.615850e-47 |
| Msa0413450 | Msa0699360 | 0.804303 | 2.304454e-49 | -8.615850e-47 |
| Msa0431770 | Msa0699360 | 0.803117 | 4.061584e-49 | -8.615850e-47 |
| Msa0432070 | Msa0699360 | 0.804641 | 1.959895e-49 | -8.615850e-47 |
| Msa0449820 | Msa0699360 | 0.804920 | 1.713317e-49 | -8.615850e-47 |
| Msa0474950 | Msa0699360 | 0.813377 | 2.639214e-51 | -8.615850e-47 |
| Msa0310410 | Msa0699360 | 0.811675 | 6.218967e-51 | -8.615850e-47 |
| Msa0322590 | Msa0699360 | 0.801535 | 8.602028e-49 | -8.615850e-47 |
| Msa0498560 | Msa0699360 | 0.800519 | 1.387343e-48 | -8.615850e-47 |
| Msa0515640 | Msa0699360 | 0.800603 | 1.333963e-48 | -8.615850e-47 |
| Msa0546300 | Msa0699360 | 0.809501 | 1.833861e-50 | -8.615850e-47 |
| Msa0562220 | Msa0699360 | 0.800064 | 1.717469e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699360 | MtrunA17_Chr8g0375271 | 95.405 | 370 | 10 | 1 | 1 | 370 | 1 | 363 | 0.0 | 713 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699360 | AT2G36740.1 | 57.865 | 356 | 134 | 4 | 10 | 358 | 5 | 351 | 4.94e-126 | 367 |
| Msa0699360 | AT2G36740.2 | 62.046 | 303 | 106 | 3 | 10 | 305 | 5 | 305 | 1.08e-116 | 342 |
Find 83 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATCATTATCATCAATTT+TGG | 0.077559 | 4_4:+70000493 | None:intergenic |
| GGCTTATATGGTTCAGTTTC+TGG | 0.098968 | 4_4:-69996809 | Msa0699360:CDS |
| GAAGAAAATCTTATCTAATT+TGG | 0.115613 | 4_4:-70000525 | Msa0699360:CDS |
| AATTATGAACTTGAGGAATT+TGG | 0.176156 | 4_4:-69999525 | Msa0699360:CDS |
| TCGCCTTTCTTCCTTATTAC+TGG | 0.196750 | 4_4:+69999708 | None:intergenic |
| GTGCATAAAACTGTCTTTAA+TGG | 0.216607 | 4_4:-69999458 | Msa0699360:CDS |
| TATGGTTCAGTTTCTGGATA+TGG | 0.239368 | 4_4:-69996803 | Msa0699360:CDS |
| CAATGGCTTCTTTCATGATT+TGG | 0.245034 | 4_4:+69996575 | None:intergenic |
| CGGCGATTTCGGCTTCTTCT+TGG | 0.253320 | 4_4:+70000785 | None:intergenic |
| GTCGAATTCGTCGGCGATTT+CGG | 0.266319 | 4_4:+70000774 | None:intergenic |
| TTCAACAAGATGAATTGTTC+TGG | 0.284399 | 4_4:-70000849 | Msa0699360:CDS |
| CAACCTGTTTGCGTTATTAC+TGG | 0.293930 | 4_4:-69997957 | Msa0699360:CDS |
| CTCTAGAAAAGAAACGAATA+TGG | 0.304931 | 4_4:-69996834 | Msa0699360:CDS |
| ACGAATATGGGAGGCTTATA+TGG | 0.306391 | 4_4:-69996821 | Msa0699360:CDS |
| GGCTGTTCTTCATCGGGTTC+AGG | 0.307025 | 4_4:+70000629 | None:intergenic |
| CAAACCTTGCGCTGAAGTAT+TGG | 0.360200 | 4_4:-69996397 | Msa0699360:three_prime_UTR |
| GCGAACAATGACGGAAGTTC+TGG | 0.369171 | 4_4:+70000397 | None:intergenic |
| ATAACGCAAACAGGTTGTTC+TGG | 0.392827 | 4_4:+69997963 | None:intergenic |
| CGTATTTGGAGTTTACTAAA+GGG | 0.400482 | 4_4:-69999316 | Msa0699360:CDS |
| ACAATGGAGGAAAAGAATTC+AGG | 0.402275 | 4_4:-70000961 | Msa0699360:CDS |
| GCGTATGGCAGCCCAGTCTT+TGG | 0.402777 | 4_4:+69997747 | None:intergenic |
| GATATTGGAGATAACCTTGT+AGG | 0.403997 | 4_4:+70000334 | None:intergenic |
| ATGCGAAGGAGGTAATGATT+AGG | 0.411108 | 4_4:-70000427 | Msa0699360:CDS |
| AGATGAATTGTTCTGGGGTC+AGG | 0.416421 | 4_4:-70000842 | Msa0699360:CDS |
| ATACACTACATATCACAAAA+TGG | 0.416807 | 4_4:-69999428 | Msa0699360:intron |
| TAGATATCTAATGATGAGAT+TGG | 0.421068 | 4_4:-69996009 | Msa0699360:three_prime_UTR |
| AAGAAGCGATTGGTATATCC+TGG | 0.422746 | 4_4:-70000578 | Msa0699360:CDS |
| TGCTGTGCTTCATCACGATT+CGG | 0.433659 | 4_4:-69996554 | Msa0699360:three_prime_UTR |
| TCAACAAGATGAATTGTTCT+GGG | 0.454323 | 4_4:-70000848 | Msa0699360:CDS |
| TTAGCCAATGTCGCCTTCCC+AGG | 0.459198 | 4_4:+70000560 | None:intergenic |
| TTCATCACGATTCGGACCTC+AGG | 0.470395 | 4_4:-69996546 | Msa0699360:intron |
| TCGTATTTGGAGTTTACTAA+AGG | 0.472369 | 4_4:-69999317 | Msa0699360:CDS |
| CCTCCTTCGCATCATCGTCC+TGG | 0.473697 | 4_4:+70000438 | None:intergenic |
| CACATGATCGGTCCTTGGCT+CGG | 0.478772 | 4_4:-69996730 | Msa0699360:CDS |
| GAATGGCTTCTCTTTCAGCT+TGG | 0.491571 | 4_4:+70000375 | None:intergenic |
| AGTTACGTCTTGATCGAAAT+CGG | 0.494921 | 4_4:+70000750 | None:intergenic |
| TCGCTCGAGATGCACGATCC+AGG | 0.497894 | 4_4:+70000911 | None:intergenic |
| AAACCAGTAATAACGCAAAC+AGG | 0.498211 | 4_4:+69997954 | None:intergenic |
| AAGAAAGGCTCTTACTTGGC+AGG | 0.501328 | 4_4:+69997930 | None:intergenic |
| GAGATCGAATCTTCTACTCC+TGG | 0.510703 | 4_4:-70000929 | Msa0699360:CDS |
| TTCAGCTTGGCGAACAATGA+CGG | 0.524822 | 4_4:+70000388 | None:intergenic |
| ACATCCACATGATCGGTCCT+TGG | 0.525200 | 4_4:-69996735 | Msa0699360:CDS |
| AGGTACCGTGATCCAAAGAC+TGG | 0.525622 | 4_4:-69997759 | Msa0699360:CDS |
| GAATCTTCATCCTCAAAAGT+AGG | 0.528439 | 4_4:+69996695 | None:intergenic |
| CTGCAGAAATTATGAACTTG+AGG | 0.529753 | 4_4:-69999532 | Msa0699360:intron |
| TGCTTTGAGAGCTTCGCGAA+TGG | 0.533499 | 4_4:+70000358 | None:intergenic |
| TCTAGAAAAGAAACGAATAT+GGG | 0.542033 | 4_4:-69996833 | Msa0699360:CDS |
| ATATCCTGGGAAGGCGACAT+TGG | 0.555043 | 4_4:-70000564 | Msa0699360:CDS |
| TCTAATGATGAGATTGGATA+CGG | 0.555098 | 4_4:-69996003 | Msa0699360:three_prime_UTR |
| AAAATATACATCCACATGAT+CGG | 0.556585 | 4_4:-69996742 | Msa0699360:CDS |
| AAAATTGATGATAATGATGA+CGG | 0.559093 | 4_4:-70000491 | Msa0699360:CDS |
| AAGTTTACTTGCAATCAAGA+AGG | 0.566909 | 4_4:+69997685 | None:intergenic |
| TATTCCAATACTTCAGCGCA+AGG | 0.570870 | 4_4:+69996393 | None:intergenic |
| GTTAACTAACACTGAACAGA+AGG | 0.571886 | 4_4:-70001005 | None:intergenic |
| CAGCCAGTAATAAGGAAGAA+AGG | 0.573774 | 4_4:-69999711 | Msa0699360:CDS |
| AGCTCTCAAAGCAACCTACA+AGG | 0.574053 | 4_4:-70000348 | Msa0699360:intron |
| TAATGCATCGTTATTACAAG+AGG | 0.577004 | 4_4:+69996612 | None:intergenic |
| CGTGCATCTCGAGCGACAAG+AGG | 0.584790 | 4_4:-70000904 | Msa0699360:CDS |
| GAGTAGATTGAAACAAGGAG+TGG | 0.593036 | 4_4:-69996056 | Msa0699360:three_prime_UTR |
| AGAAGCGATTGGTATATCCT+GGG | 0.596937 | 4_4:-70000577 | Msa0699360:CDS |
| GTATTTGGAGTTTACTAAAG+GGG | 0.598121 | 4_4:-69999315 | Msa0699360:CDS |
| ATCGTGATGAAGCACAGCAA+TGG | 0.601389 | 4_4:+69996558 | None:intergenic |
| CGCACATTCTTGAGACGTTG+TGG | 0.601571 | 4_4:+69999271 | None:intergenic |
| CGAGCCAAGGACCGATCATG+TGG | 0.604117 | 4_4:+69996731 | None:intergenic |
| GGAGAAGAAAATGTCACAAG+AGG | 0.609231 | 4_4:-69999685 | Msa0699360:CDS |
| TGTGATATGTAGTGTATCTG+TGG | 0.609479 | 4_4:+69999434 | None:intergenic |
| GCAGCCCAGTCTTTGGATCA+CGG | 0.611548 | 4_4:+69997754 | None:intergenic |
| CAACCAGGACGATGATGCGA+AGG | 0.612565 | 4_4:-70000441 | Msa0699360:CDS |
| AAACAACAAGAACAACAACC+AGG | 0.612812 | 4_4:-70000456 | Msa0699360:CDS |
| CCAGGACGATGATGCGAAGG+AGG | 0.615528 | 4_4:-70000438 | Msa0699360:CDS |
| AAGATTCTGACTAACTGCCT+TGG | 0.625749 | 4_4:-69996679 | Msa0699360:exon |
| GCGATTGGTATATCCTGGGA+AGG | 0.627485 | 4_4:-70000573 | Msa0699360:CDS |
| GTGCGAGCGAGTCAGTACAA+TGG | 0.639455 | 4_4:-70000977 | Msa0699360:exon |
| AGAAAAGAAACGAATATGGG+AGG | 0.647868 | 4_4:-69996830 | Msa0699360:CDS |
| CGAGCGAGTCAGTACAATGG+AGG | 0.651028 | 4_4:-70000974 | Msa0699360:exon |
| AATTCTACGAAACCGAGCCA+AGG | 0.655235 | 4_4:+69996718 | None:intergenic |
| GGAGGGAGTATACAACTCCA+TGG | 0.656981 | 4_4:+69996342 | None:intergenic |
| AATGCATCGTTATTACAAGA+GGG | 0.657409 | 4_4:+69996613 | None:intergenic |
| CAACAAGATGAATTGTTCTG+GGG | 0.658361 | 4_4:-70000847 | Msa0699360:CDS |
| GGAGGGAGTAGATTGAAACA+AGG | 0.659002 | 4_4:-69996061 | Msa0699360:intron |
| GAAATCGGAGTCGAATTCGT+CGG | 0.659651 | 4_4:+70000765 | None:intergenic |
| AGTAATAAGGAAGAAAGGCG+AGG | 0.677909 | 4_4:-69999706 | Msa0699360:CDS |
| GGTACCGTGATCCAAAGACT+GGG | 0.697285 | 4_4:-69997758 | Msa0699360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTTTTTTCTTTTTTTT+TGG | - | chr4_4:69997265-69997284 | Msa0699360:intron | 10.0% |
| !!! | CTAACTAATTTTTGTAAATT+CGG | + | chr4_4:69998098-69998117 | None:intergenic | 15.0% |
| !! | TTCAATACAAAAAAAATTGA+CGG | - | chr4_4:69998685-69998704 | Msa0699360:intron | 15.0% |
| !!! | GTTTAATTAGTTTAAAGTTA+GGG | - | chr4_4:69998707-69998726 | Msa0699360:intron | 15.0% |
| !! | TACTGTTATAAAAGAATATT+AGG | + | chr4_4:69999366-69999385 | None:intergenic | 15.0% |
| !!! | ATCATAAAAAGTTATCTTTT+TGG | + | chr4_4:69999434-69999453 | None:intergenic | 15.0% |
| !! | TTATAAGAACAATTATAACT+AGG | + | chr4_4:69999881-69999900 | None:intergenic | 15.0% |
| !! | TATAAAAGAAGACTAAAAAT+AGG | + | chr4_4:70000363-70000382 | None:intergenic | 15.0% |
| !!! | AATAAATAAGGGTATAATAA+TGG | + | chr4_4:70000775-70000794 | None:intergenic | 15.0% |
| !! | GAAGAAAATCTTATCTAATT+TGG | - | chr4_4:69996476-69996495 | Msa0699360:intron | 20.0% |
| !!! | TCATCATTATCATCAATTTT+GGG | + | chr4_4:69996510-69996529 | None:intergenic | 20.0% |
| !!! | AAAATTGATGATAATGATGA+CGG | - | chr4_4:69996510-69996529 | Msa0699360:intron | 20.0% |
| !!! | TTTTATCTATTGTTGTGATA+AGG | + | chr4_4:69996908-69996927 | None:intergenic | 20.0% |
| !! | TTATTTCAATAATCTTTCTG+GGG | + | chr4_4:69996979-69996998 | None:intergenic | 20.0% |
| !! | CTTATTTCAATAATCTTTCT+GGG | + | chr4_4:69996980-69996999 | None:intergenic | 20.0% |
| !! | AACTTAAATGCTTATCATAT+AGG | + | chr4_4:69997185-69997204 | None:intergenic | 20.0% |
| !! | AATATAGTGCTAGAATAAAA+GGG | + | chr4_4:69997757-69997776 | None:intergenic | 20.0% |
| !! | AAATATAGTGCTAGAATAAA+AGG | + | chr4_4:69997758-69997777 | None:intergenic | 20.0% |
| !!! | TTTATTCTAGCACTATATTT+TGG | - | chr4_4:69997758-69997777 | Msa0699360:CDS | 20.0% |
| !!! | ATTTTTGTAAATTCGGTATT+TGG | + | chr4_4:69998091-69998110 | None:intergenic | 20.0% |
| !! | CGAATTTACAAAAATTAGTT+AGG | - | chr4_4:69998096-69998115 | Msa0699360:intron | 20.0% |
| !! | TACAAAAATTAGTTAGGTTT+AGG | - | chr4_4:69998102-69998121 | Msa0699360:intron | 20.0% |
| !!! | ACTAAGTGTTTTAGATAATT+AGG | - | chr4_4:69998378-69998397 | Msa0699360:intron | 20.0% |
| !!! | CTAAGTGTTTTAGATAATTA+GGG | - | chr4_4:69998379-69998398 | Msa0699360:intron | 20.0% |
| !!! | GTAAAACTTTTTCTACTTAA+AGG | + | chr4_4:69998498-69998517 | None:intergenic | 20.0% |
| !! | GAATTCGTTAGATAAAAAAT+TGG | - | chr4_4:69998656-69998675 | Msa0699360:intron | 20.0% |
| !!! | GGTTTAATTAGTTTAAAGTT+AGG | - | chr4_4:69998706-69998725 | Msa0699360:intron | 20.0% |
| !!! | CTTTTAAAATAATTCGACAA+CGG | - | chr4_4:69999288-69999307 | Msa0699360:CDS | 20.0% |
| !!! | TTTTTTTTTTCATTCTGCAA+TGG | - | chr4_4:69999477-69999496 | Msa0699360:CDS | 20.0% |
| !! | TTAGTAATTCAATAACATCA+TGG | + | chr4_4:69999552-69999571 | None:intergenic | 20.0% |
| !!! | TAAATATAAAAGCATTCATG+TGG | - | chr4_4:69999998-70000017 | Msa0699360:intron | 20.0% |
| !!! | AAATATAAAAGCATTCATGT+GGG | - | chr4_4:69999999-70000018 | Msa0699360:intron | 20.0% |
| !!! | TGCTTGTAATTGATTTTAAT+TGG | - | chr4_4:70000109-70000128 | Msa0699360:intron | 20.0% |
| !!! | GCTTGTAATTGATTTTAATT+GGG | - | chr4_4:70000110-70000129 | Msa0699360:intron | 20.0% |
| !!! | CTTGTAATTGATTTTAATTG+GGG | - | chr4_4:70000111-70000130 | Msa0699360:intron | 20.0% |
| !! | GGATGAAATTCAATAAATAA+GGG | + | chr4_4:70000786-70000805 | None:intergenic | 20.0% |
| !! | TGGATGAAATTCAATAAATA+AGG | + | chr4_4:70000787-70000806 | None:intergenic | 20.0% |
| !! | TAATTCTTCTTGATTTTCTC+AGG | - | chr4_4:69996347-69996366 | Msa0699360:intron | 25.0% |
| ! | AATGAATAAAAAGAAGCGAT+TGG | - | chr4_4:69996413-69996432 | Msa0699360:three_prime_UTR | 25.0% |
| !! | GTCATCATTATCATCAATTT+TGG | + | chr4_4:69996511-69996530 | None:intergenic | 25.0% |
| ! | TGAATCACAGAAAAAGATAT+TGG | + | chr4_4:69996685-69996704 | None:intergenic | 25.0% |
| !! | ATCTTTTTCTGTGATTCATT+AGG | - | chr4_4:69996687-69996706 | Msa0699360:exon | 25.0% |
| !! | TCTTTTTCTGTGATTCATTA+GGG | - | chr4_4:69996688-69996707 | Msa0699360:CDS | 25.0% |
| ! | GCTTATTTCAATAATCTTTC+TGG | + | chr4_4:69996981-69997000 | None:intergenic | 25.0% |
| ! | AATAAGCTTATAACAGCTTA+TGG | - | chr4_4:69996994-69997013 | Msa0699360:intron | 25.0% |
| ! | TACATAGATTCTGTTAAGAT+TGG | + | chr4_4:69997084-69997103 | None:intergenic | 25.0% |
| ! | CTTAACAGAATCTATGTAAA+TGG | - | chr4_4:69997086-69997105 | Msa0699360:intron | 25.0% |
| ! | AAGCATAATTGAAACATCAA+AGG | + | chr4_4:69997443-69997462 | None:intergenic | 25.0% |
| !! | TGATGTTTCAATTATGCTTT+TGG | - | chr4_4:69997444-69997463 | Msa0699360:intron | 25.0% |
| ! | AATTATGAACTTGAGGAATT+TGG | - | chr4_4:69997476-69997495 | Msa0699360:intron | 25.0% |
| ! | ATACACTACATATCACAAAA+TGG | - | chr4_4:69997573-69997592 | Msa0699360:intron | 25.0% |
| ! | ACAGATTGCTATATGTAAAA+TGG | + | chr4_4:69997647-69997666 | None:intergenic | 25.0% |
| !!! | AGCAATCTGTTTATTTTTTC+AGG | - | chr4_4:69997657-69997676 | Msa0699360:intron | 25.0% |
| ! | ATGTAATATATTCCGTTTCT+TGG | - | chr4_4:69997800-69997819 | Msa0699360:intron | 25.0% |
| ! | TAATGTATTGTGAAAACCAA+TGG | + | chr4_4:69997875-69997894 | None:intergenic | 25.0% |
| ! | TAGACAATAACTAGAATAAC+TGG | - | chr4_4:69997922-69997941 | Msa0699360:intron | 25.0% |
| ! | AAATTAGTTAGGTTTAGGAA+AGG | - | chr4_4:69998107-69998126 | Msa0699360:intron | 25.0% |
| ! | ATGTATAGTAAACAATGAGT+AGG | - | chr4_4:69998145-69998164 | Msa0699360:intron | 25.0% |
| !! | TATCTAAAACACTTAGTTGT+GGG | + | chr4_4:69998375-69998394 | None:intergenic | 25.0% |
| !! | TTATCTAAAACACTTAGTTG+TGG | + | chr4_4:69998376-69998395 | None:intergenic | 25.0% |
| ! | TAAGATTTGCAACTATGTAT+GGG | - | chr4_4:69998528-69998547 | Msa0699360:intron | 25.0% |
| ! | TAATTCAATAACATCATGGT+GGG | + | chr4_4:69999548-69999567 | None:intergenic | 25.0% |
| ! | AGGATTAAACACAATTTCAT+GGG | + | chr4_4:69999861-69999880 | None:intergenic | 25.0% |
| ! | TAGGATTAAACACAATTTCA+TGG | + | chr4_4:69999862-69999881 | None:intergenic | 25.0% |
| ! | TCTAGAAAAGAAACGAATAT+GGG | - | chr4_4:70000168-70000187 | Msa0699360:intron | 25.0% |
| ! | AAAATATACATCCACATGAT+CGG | - | chr4_4:70000259-70000278 | Msa0699360:intron | 25.0% |
| ! | AAAAGAAGACTAAAAATAGG+AGG | + | chr4_4:70000360-70000379 | None:intergenic | 25.0% |
| ! | TTGGGATTAAAATAGAAACA+GGG | - | chr4_4:70000478-70000497 | Msa0699360:CDS | 25.0% |
| ! | AAAAGTAATAAATGCTGCAT+TGG | + | chr4_4:70000749-70000768 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr4_4:70000817-70000836 | Msa0699360:CDS | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | - | chr4_4:70000818-70000837 | Msa0699360:CDS | 25.0% |
| !!! | ATTGATTGTGTTGATTTCAA+TGG | + | chr4_4:70000870-70000889 | None:intergenic | 25.0% |
| !! | CTCTAAATTATTGTCGTTTA+AGG | + | chr4_4:70000918-70000937 | None:intergenic | 25.0% |
| ! | AAACGACAATAATTTAGAGA+CGG | - | chr4_4:70000919-70000938 | Msa0699360:CDS | 25.0% |
| ! | TAGATATCTAATGATGAGAT+TGG | - | chr4_4:70000992-70001011 | Msa0699360:five_prime_UTR | 25.0% |
| TTCAACAAGATGAATTGTTC+TGG | - | chr4_4:69996152-69996171 | Msa0699360:intron | 30.0% | |
| TCAACAAGATGAATTGTTCT+GGG | - | chr4_4:69996153-69996172 | Msa0699360:intron | 30.0% | |
| ! | TAATCGGTATGAATGAGTTT+TGG | + | chr4_4:69996283-69996302 | None:intergenic | 30.0% |
| ! | ATTCTTTCATCATCGTTTTG+TGG | + | chr4_4:69996396-69996415 | None:intergenic | 30.0% |
| ! | TCATTATCATCAATTTTGGG+AGG | + | chr4_4:69996507-69996526 | None:intergenic | 30.0% |
| CTATCTTGAAAAACAGCTTA+TGG | + | chr4_4:69996849-69996868 | None:intergenic | 30.0% | |
| ! | AACATTTTCAGACCATAATC+AGG | + | chr4_4:69997250-69997269 | None:intergenic | 30.0% |
| GGTCAATATTAGAATACACT+TGG | - | chr4_4:69997365-69997384 | Msa0699360:intron | 30.0% | |
| GAAAACTAAAACAAACAAGC+AGG | + | chr4_4:69997413-69997432 | None:intergenic | 30.0% | |
| GTGCATAAAACTGTCTTTAA+TGG | - | chr4_4:69997543-69997562 | Msa0699360:intron | 30.0% | |
| ACTACATATCACAAAATGGT+TGG | - | chr4_4:69997577-69997596 | Msa0699360:intron | 30.0% | |
| !! | TGCATTTAGTTTGGTTGTAT+TGG | - | chr4_4:69997615-69997634 | Msa0699360:intron | 30.0% |
| !!! | TTTTTCAGGTTGTTCGTATT+TGG | - | chr4_4:69997671-69997690 | Msa0699360:intron | 30.0% |
| ! | TCGTATTTGGAGTTTACTAA+AGG | - | chr4_4:69997684-69997703 | Msa0699360:intron | 30.0% |
| ! | CGTATTTGGAGTTTACTAAA+GGG | - | chr4_4:69997685-69997704 | Msa0699360:intron | 30.0% |
| ! | GTATTTGGAGTTTACTAAAG+GGG | - | chr4_4:69997686-69997705 | Msa0699360:intron | 30.0% |
| GAACTTTATGAACCAAGAAA+CGG | + | chr4_4:69997815-69997834 | None:intergenic | 30.0% | |
| AATGGCGAAACAATTTCTTT+GGG | + | chr4_4:69997857-69997876 | None:intergenic | 30.0% | |
| ! | TTCAGATGGTATCATTTTAC+TGG | - | chr4_4:69997982-69998001 | Msa0699360:intron | 30.0% |
| TGACATTATAACAAGTGCTA+AGG | - | chr4_4:69998015-69998034 | Msa0699360:intron | 30.0% | |
| ! | GCAGTTGAACATAAATGTTT+TGG | - | chr4_4:69998039-69998058 | Msa0699360:intron | 30.0% |
| !!! | ATAAATGTTTTGGAGACCAA+GGG | - | chr4_4:69998049-69998068 | Msa0699360:intron | 30.0% |
| ATAGTAAACAATGAGTAGGA+AGG | - | chr4_4:69998149-69998168 | Msa0699360:intron | 30.0% | |
| TTGAAGTAGAAAAATGCTTC+AGG | - | chr4_4:69998460-69998479 | Msa0699360:intron | 30.0% | |
| ACATAGTTGCAAATCTTACT+AGG | + | chr4_4:69998526-69998545 | None:intergenic | 30.0% | |
| GTAAGATTTGCAACTATGTA+TGG | - | chr4_4:69998527-69998546 | Msa0699360:intron | 30.0% | |
| TTCAACCTCACATATTATGA+AGG | + | chr4_4:69998787-69998806 | None:intergenic | 30.0% | |
| ATAATATGTGAGGTTGAAGA+TGG | - | chr4_4:69998789-69998808 | Msa0699360:intron | 30.0% | |
| !! | ATGTTGGTAACTCTTACAAA+TGG | - | chr4_4:69998813-69998832 | Msa0699360:intron | 30.0% |
| !! | TGTTGGTAACTCTTACAAAT+GGG | - | chr4_4:69998814-69998833 | Msa0699360:intron | 30.0% |
| ! | TGAGAAGAATTTAAAGTACC+CGG | - | chr4_4:69998880-69998899 | Msa0699360:intron | 30.0% |
| TCACATCAATACATCAAGAA+AGG | + | chr4_4:69999089-69999108 | None:intergenic | 30.0% | |
| TAATAATCCAACTGAACTAC+TGG | + | chr4_4:69999129-69999148 | None:intergenic | 30.0% | |
| TAAAAAAGAAGTAGTTCAGC+CGG | - | chr4_4:69999156-69999175 | Msa0699360:intron | 30.0% | |
| ATAGACAAAGGGAAATATTC+CGG | + | chr4_4:69999178-69999197 | None:intergenic | 30.0% | |
| ! | TAACAATATTTGAGGTACAG+TGG | + | chr4_4:69999203-69999222 | None:intergenic | 30.0% |
| CTGTACCTCAAATATTGTTA+AGG | - | chr4_4:69999203-69999222 | Msa0699360:intron | 30.0% | |
| GAACTCCTTAACAATATTTG+AGG | + | chr4_4:69999211-69999230 | None:intergenic | 30.0% | |
| AAGTTTACTTGCAATCAAGA+AGG | + | chr4_4:69999319-69999338 | None:intergenic | 30.0% | |
| GTTAATGTGATTCACTTCAT+AGG | - | chr4_4:69999387-69999406 | Msa0699360:intron | 30.0% | |
| TGATCTAATGTTCCAATAGA+AGG | - | chr4_4:69999502-69999521 | Msa0699360:CDS | 30.0% | |
| AATTCAATAACATCATGGTG+GGG | + | chr4_4:69999547-69999566 | None:intergenic | 30.0% | |
| GTAATTCAATAACATCATGG+TGG | + | chr4_4:69999549-69999568 | None:intergenic | 30.0% | |
| TATTGTTGGATAGCTAATGA+TGG | - | chr4_4:69999743-69999762 | Msa0699360:intron | 30.0% | |
| ATTGTTGGATAGCTAATGAT+GGG | - | chr4_4:69999744-69999763 | Msa0699360:intron | 30.0% | |
| TCTGAAAAGCTAGAGAAATT+GGG | + | chr4_4:69999802-69999821 | None:intergenic | 30.0% | |
| TGGTTAATGATAGTAGGATT+AGG | - | chr4_4:70000025-70000044 | Msa0699360:intron | 30.0% | |
| ! | CTCTAGAAAAGAAACGAATA+TGG | - | chr4_4:70000167-70000186 | Msa0699360:intron | 30.0% |
| AATGCATCGTTATTACAAGA+GGG | + | chr4_4:70000391-70000410 | None:intergenic | 30.0% | |
| TAATGCATCGTTATTACAAG+AGG | + | chr4_4:70000392-70000411 | None:intergenic | 30.0% | |
| GTTGGGATTAAAATAGAAAC+AGG | - | chr4_4:70000477-70000496 | Msa0699360:CDS | 30.0% | |
| TCCTGATAAAAAAATGAGCA+GGG | + | chr4_4:70000564-70000583 | None:intergenic | 30.0% | |
| AAGAGACTATTATTGTGAGA+CGG | + | chr4_4:70000683-70000702 | None:intergenic | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | + | chr4_4:70000821-70000840 | None:intergenic | 30.0% | |
| TCTAATGATGAGATTGGATA+CGG | - | chr4_4:70000998-70001017 | Msa0699360:five_prime_UTR | 30.0% | |
| ACAATGGAGGAAAAGAATTC+AGG | - | chr4_4:69996040-69996059 | Msa0699360:three_prime_UTR | 35.0% | |
| CAACAAGATGAATTGTTCTG+GGG | - | chr4_4:69996154-69996173 | Msa0699360:intron | 35.0% | |
| AGTTACGTCTTGATCGAAAT+CGG | + | chr4_4:69996254-69996273 | None:intergenic | 35.0% | |
| AAACAACAAGAACAACAACC+AGG | - | chr4_4:69996545-69996564 | Msa0699360:intron | 35.0% | |
| GATATTGGAGATAACCTTGT+AGG | + | chr4_4:69996670-69996689 | None:intergenic | 35.0% | |
| TGTATTTGTGCTCATCTAGT+GGG | - | chr4_4:69996769-69996788 | Msa0699360:CDS | 35.0% | |
| AGATAGCTTATGCTTCTGTT+TGG | - | chr4_4:69996863-69996882 | Msa0699360:intron | 35.0% | |
| CTTATAACAGCTTATGGACA+TGG | - | chr4_4:69997000-69997019 | Msa0699360:intron | 35.0% | |
| GTTCTTCTAAACAATATCCC+AGG | - | chr4_4:69997028-69997047 | Msa0699360:intron | 35.0% | |
| ! | AGCATTTAAGTTAGAAGCAC+TGG | - | chr4_4:69997193-69997212 | Msa0699360:intron | 35.0% |
| TTCCAAACAACACCTGATTA+TGG | - | chr4_4:69997235-69997254 | Msa0699360:intron | 35.0% | |
| CTGCAGAAATTATGAACTTG+AGG | - | chr4_4:69997469-69997488 | Msa0699360:intron | 35.0% | |
| TGTGATATGTAGTGTATCTG+TGG | + | chr4_4:69997570-69997589 | None:intergenic | 35.0% | |
| CATTCCATGTGCATTTAGTT+TGG | - | chr4_4:69997606-69997625 | Msa0699360:intron | 35.0% | |
| ACAACCAAACTAAATGCACA+TGG | + | chr4_4:69997613-69997632 | None:intergenic | 35.0% | |
| CAATGGCGAAACAATTTCTT+TGG | + | chr4_4:69997858-69997877 | None:intergenic | 35.0% | |
| CAAAGAAATTGTTTCGCCAT+TGG | - | chr4_4:69997856-69997875 | Msa0699360:intron | 35.0% | |
| AATAACTGGACACATTCCAA+AGG | - | chr4_4:69997936-69997955 | Msa0699360:intron | 35.0% | |
| !!! | CATAAATGTTTTGGAGACCA+AGG | - | chr4_4:69998048-69998067 | Msa0699360:intron | 35.0% |
| TTAGTTAGGTTTAGGAAAGG+AGG | - | chr4_4:69998110-69998129 | Msa0699360:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | + | chr4_4:69998270-69998289 | None:intergenic | 35.0% | |
| !!! | TTACCCTGTTTTTACACAAG+AGG | - | chr4_4:69998269-69998288 | Msa0699360:intron | 35.0% |
| GGGTGTATCTTACAAAAGAA+AGG | - | chr4_4:69998399-69998418 | Msa0699360:intron | 35.0% | |
| TATGTATGGGTCAGAAATGT+TGG | - | chr4_4:69998541-69998560 | Msa0699360:intron | 35.0% | |
| ATGTATGGGTCAGAAATGTT+GGG | - | chr4_4:69998542-69998561 | Msa0699360:intron | 35.0% | |
| GCAATCATGAGCATAAATGA+TGG | - | chr4_4:69998574-69998593 | Msa0699360:intron | 35.0% | |
| TGAGCATAAATGATGGTTGT+AGG | - | chr4_4:69998581-69998600 | Msa0699360:intron | 35.0% | |
| AAGTTAGGGTAGCTACTATA+TGG | - | chr4_4:69998721-69998740 | Msa0699360:intron | 35.0% | |
| ! | TCACATATTATGAAGGCATG+TGG | + | chr4_4:69998780-69998799 | None:intergenic | 35.0% |
| ACATGCCTTCATAATATGTG+AGG | - | chr4_4:69998779-69998798 | Msa0699360:intron | 35.0% | |
| GTAACTCTTACAAATGGGTA+GGG | - | chr4_4:69998819-69998838 | Msa0699360:intron | 35.0% | |
| TAACTCTTACAAATGGGTAG+GGG | - | chr4_4:69998820-69998839 | Msa0699360:intron | 35.0% | |
| TACATAGAATTTCCTGATGC+CGG | + | chr4_4:69998902-69998921 | None:intergenic | 35.0% | |
| AAACCAGTAATAACGCAAAC+AGG | + | chr4_4:69999050-69999069 | None:intergenic | 35.0% | |
| TTGATTACCAGTAGTTCAGT+TGG | - | chr4_4:69999119-69999138 | Msa0699360:intron | 35.0% | |
| ! | AAAGCTTCTTTTGTAGCGTA+TGG | + | chr4_4:69999272-69999291 | None:intergenic | 35.0% |
| CTTAAGATGACATGGTTCAT+TGG | + | chr4_4:69999625-69999644 | None:intergenic | 35.0% | |
| TGAACCATGTCATCTTAAGA+AGG | - | chr4_4:69999626-69999645 | Msa0699360:intron | 35.0% | |
| CTTTCCTTCTTAAGATGACA+TGG | + | chr4_4:69999633-69999652 | None:intergenic | 35.0% | |
| !!! | TTTTCTTAGTCTTGAAGTCC+AGG | - | chr4_4:69999712-69999731 | Msa0699360:intron | 35.0% |
| !! | TTTCTTAGTCTTGAAGTCCA+GGG | - | chr4_4:69999713-69999732 | Msa0699360:intron | 35.0% |
| ! | CTCTGAAAAGCTAGAGAAAT+TGG | + | chr4_4:69999803-69999822 | None:intergenic | 35.0% |
| TAAACACAATTTCATGGGTG+TGG | + | chr4_4:69999856-69999875 | None:intergenic | 35.0% | |
| AGAAAAGAAACGAATATGGG+AGG | - | chr4_4:70000171-70000190 | Msa0699360:intron | 35.0% | |
| ! | TATGGTTCAGTTTCTGGATA+TGG | - | chr4_4:70000198-70000217 | Msa0699360:intron | 35.0% |
| ! | CATTGTCGATCTCTTTTTCT+TGG | + | chr4_4:70000232-70000251 | None:intergenic | 35.0% |
| !! | TCGTAGAATTCCTACTTTTG+AGG | - | chr4_4:70000296-70000315 | Msa0699360:intron | 35.0% |
| GAATCTTCATCCTCAAAAGT+AGG | + | chr4_4:70000309-70000328 | None:intergenic | 35.0% | |
| GGAGGAAAAAAAAATCACCA+AGG | + | chr4_4:70000342-70000361 | None:intergenic | 35.0% | |
| CAATGGCTTCTTTCATGATT+TGG | + | chr4_4:70000429-70000448 | None:intergenic | 35.0% | |
| !!! | TCTATTTTAATCCCAACCTG+AGG | + | chr4_4:70000474-70000493 | None:intergenic | 35.0% |
| !!! | ACCCTGCTCATTTTTTTATC+AGG | - | chr4_4:70000560-70000579 | Msa0699360:CDS | 35.0% |
| CTCCTGATAAAAAAATGAGC+AGG | + | chr4_4:70000565-70000584 | None:intergenic | 35.0% | |
| AGTTAGTGGAGTAGTTAAGT+TGG | + | chr4_4:70000807-70000826 | None:intergenic | 35.0% | |
| GACAATAATTTAGAGACGGA+GGG | - | chr4_4:70000923-70000942 | Msa0699360:CDS | 35.0% | |
| ! | TTTTGTGGCTGTTCTTCATC+GGG | + | chr4_4:69996381-69996400 | None:intergenic | 40.0% |
| ! | GTTTTGTGGCTGTTCTTCAT+CGG | + | chr4_4:69996382-69996401 | None:intergenic | 40.0% |
| AAGAAGCGATTGGTATATCC+TGG | - | chr4_4:69996423-69996442 | Msa0699360:intron | 40.0% | |
| AGAAGCGATTGGTATATCCT+GGG | - | chr4_4:69996424-69996443 | Msa0699360:intron | 40.0% | |
| ATGCGAAGGAGGTAATGATT+AGG | - | chr4_4:69996574-69996593 | Msa0699360:three_prime_UTR | 40.0% | |
| GTGTATTTGTGCTCATCTAG+TGG | - | chr4_4:69996768-69996787 | Msa0699360:CDS | 40.0% | |
| GCTCTCACAAATAATCTCAC+AGG | + | chr4_4:69996802-69996821 | None:intergenic | 40.0% | |
| ATCTACTAGCATAAGCACCT+GGG | + | chr4_4:69997048-69997067 | None:intergenic | 40.0% | |
| TATCTACTAGCATAAGCACC+TGG | + | chr4_4:69997049-69997068 | None:intergenic | 40.0% | |
| !! | GACCATAATCAGGTGTTGTT+TGG | + | chr4_4:69997240-69997259 | None:intergenic | 40.0% |
| !!! | TTTTGGCTCAGCCAGTAATA+AGG | - | chr4_4:69997282-69997301 | Msa0699360:intron | 40.0% |
| CAGCCAGTAATAAGGAAGAA+AGG | - | chr4_4:69997290-69997309 | Msa0699360:intron | 40.0% | |
| TCGCCTTTCTTCCTTATTAC+TGG | + | chr4_4:69997296-69997315 | None:intergenic | 40.0% | |
| AGTAATAAGGAAGAAAGGCG+AGG | - | chr4_4:69997295-69997314 | Msa0699360:intron | 40.0% | |
| GGAGAAGAAAATGTCACAAG+AGG | - | chr4_4:69997316-69997335 | Msa0699360:intron | 40.0% | |
| !! | CTTTTAGAAGCTGCTCAAAC+AGG | - | chr4_4:69997344-69997363 | Msa0699360:intron | 40.0% |
| ACAACTCAAGAGAAATCCCT+TGG | + | chr4_4:69998068-69998087 | None:intergenic | 40.0% | |
| TTAGGTTTAGGAAAGGAGGA+TGG | - | chr4_4:69998114-69998133 | Msa0699360:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr4_4:69998244-69998263 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | + | chr4_4:69998275-69998294 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | + | chr4_4:69998276-69998295 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | + | chr4_4:69998320-69998339 | None:intergenic | 40.0% | |
| ATGTCCCACAATATCCAAAC+AGG | - | chr4_4:69998432-69998451 | Msa0699360:intron | 40.0% | |
| CTGTCCTGTTTGGATATTGT+GGG | + | chr4_4:69998439-69998458 | None:intergenic | 40.0% | |
| ATGATGGTTGTAGGAATGAG+TGG | - | chr4_4:69998590-69998609 | Msa0699360:intron | 40.0% | |
| TTGTAGGAATGAGTGGAGTA+TGG | - | chr4_4:69998597-69998616 | Msa0699360:intron | 40.0% | |
| TGTAGGAATGAGTGGAGTAT+GGG | - | chr4_4:69998598-69998617 | Msa0699360:intron | 40.0% | |
| ! | CATATTATGAAGGCATGTGG+TGG | + | chr4_4:69998777-69998796 | None:intergenic | 40.0% |
| GGTAACTCTTACAAATGGGT+AGG | - | chr4_4:69998818-69998837 | Msa0699360:intron | 40.0% | |
| AACTCTTACAAATGGGTAGG+GGG | - | chr4_4:69998821-69998840 | Msa0699360:intron | 40.0% | |
| ! | AATTTAAAGTACCCGGCATC+AGG | - | chr4_4:69998887-69998906 | Msa0699360:intron | 40.0% |
| ACATAGAATTTCCTGATGCC+GGG | + | chr4_4:69998901-69998920 | None:intergenic | 40.0% | |
| ATAACGCAAACAGGTTGTTC+TGG | + | chr4_4:69999041-69999060 | None:intergenic | 40.0% | |
| CAACCTGTTTGCGTTATTAC+TGG | - | chr4_4:69999044-69999063 | Msa0699360:intron | 40.0% | |
| CATCAAGAAAGGCTCTTACT+TGG | + | chr4_4:69999078-69999097 | None:intergenic | 40.0% | |
| GTACAGTGGCTATAGACAAA+GGG | + | chr4_4:69999189-69999208 | None:intergenic | 40.0% | |
| AAGGAGTTCTCTCTTGATAC+AGG | - | chr4_4:69999222-69999241 | Msa0699360:intron | 40.0% | |
| AAGCTAGAGAAATTGGGTGA+AGG | + | chr4_4:69999796-69999815 | None:intergenic | 40.0% | |
| !!! | TCTAGCTTTTCAGAGAGAGA+TGG | - | chr4_4:69999808-69999827 | Msa0699360:intron | 40.0% |
| CTGTAAGAGCTATTGCATGA+GGG | - | chr4_4:69999968-69999987 | Msa0699360:intron | 40.0% | |
| TGTAAGAGCTATTGCATGAG+GGG | - | chr4_4:69999969-69999988 | Msa0699360:intron | 40.0% | |
| !! | AAAAGCATTCATGTGGGAGT+TGG | - | chr4_4:70000005-70000024 | Msa0699360:intron | 40.0% |
| ! | GGGAGTTGGTTAATGATAGT+AGG | - | chr4_4:70000019-70000038 | Msa0699360:intron | 40.0% |
| !! | GGGATTATTTTGCAGCATTC+TGG | - | chr4_4:70000131-70000150 | Msa0699360:intron | 40.0% |
| ACGAATATGGGAGGCTTATA+TGG | - | chr4_4:70000180-70000199 | Msa0699360:intron | 40.0% | |
| GGCTTATATGGTTCAGTTTC+TGG | - | chr4_4:70000192-70000211 | Msa0699360:intron | 40.0% | |
| ! | GTCGATCTCTTTTTCTTGGT+TGG | + | chr4_4:70000228-70000247 | None:intergenic | 40.0% |
| AAGATTCTGACTAACTGCCT+TGG | - | chr4_4:70000322-70000341 | Msa0699360:intron | 40.0% | |
| AGGCCTGTTTCAGTAATCTT+GGG | - | chr4_4:70000507-70000526 | Msa0699360:CDS | 40.0% | |
| AGACCCAAGATTACTGAAAC+AGG | + | chr4_4:70000513-70000532 | None:intergenic | 40.0% | |
| TATTCCAATACTTCAGCGCA+AGG | + | chr4_4:70000611-70000630 | None:intergenic | 40.0% | |
| ! | CTTTTACAAGACAGACACCA+TGG | - | chr4_4:70000642-70000661 | Msa0699360:intron | 40.0% |
| GACTATTATTGTGAGACGGA+GGG | + | chr4_4:70000679-70000698 | None:intergenic | 40.0% | |
| AGACTATTATTGTGAGACGG+AGG | + | chr4_4:70000680-70000699 | None:intergenic | 40.0% | |
| ! | TGTCGTTTAAGGTTTGTGCA+CGG | + | chr4_4:70000907-70000926 | None:intergenic | 40.0% |
| CGACAATAATTTAGAGACGG+AGG | - | chr4_4:70000922-70000941 | Msa0699360:CDS | 40.0% | |
| GAGTAGATTGAAACAAGGAG+TGG | - | chr4_4:70000945-70000964 | Msa0699360:CDS | 40.0% | |
| GAGATCGAATCTTCTACTCC+TGG | - | chr4_4:69996072-69996091 | Msa0699360:intron | 45.0% | |
| !! | AGATGAATTGTTCTGGGGTC+AGG | - | chr4_4:69996159-69996178 | Msa0699360:intron | 45.0% |
| GAAATCGGAGTCGAATTCGT+CGG | + | chr4_4:69996239-69996258 | None:intergenic | 45.0% | |
| TTCAGCTTGGCGAACAATGA+CGG | + | chr4_4:69996616-69996635 | None:intergenic | 45.0% | |
| GAATGGCTTCTCTTTCAGCT+TGG | + | chr4_4:69996629-69996648 | None:intergenic | 45.0% | |
| AGCTCTCAAAGCAACCTACA+AGG | - | chr4_4:69996653-69996672 | Msa0699360:three_prime_UTR | 45.0% | |
| ACTGGACACATTCCAAAGGA+AGG | - | chr4_4:69997940-69997959 | Msa0699360:intron | 45.0% | |
| ACATTCCAAAGGAAGGACCT+TGG | - | chr4_4:69997947-69997966 | Msa0699360:CDS | 45.0% | |
| CTGAAACAAAGCCTCTACCA+AGG | + | chr4_4:69997967-69997986 | None:intergenic | 45.0% | |
| !! | GGTAGAGGCTTTGTTTCAGA+TGG | - | chr4_4:69997968-69997987 | Msa0699360:CDS | 45.0% |
| !! | AGGAAGAGTACCCACAACTA+AGG | - | chr4_4:69998169-69998188 | Msa0699360:intron | 45.0% |
| !! | GGAAGAGTACCCACAACTAA+GGG | - | chr4_4:69998170-69998189 | Msa0699360:intron | 45.0% |
| GCGTACAATACACCAAATGG+TGG | + | chr4_4:69998245-69998264 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr4_4:69998248-69998267 | None:intergenic | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr4_4:69998280-69998299 | Msa0699360:intron | 45.0% |
| TCATGTGACTGTAAGGTCAC+GGG | + | chr4_4:69998313-69998332 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | + | chr4_4:69998314-69998333 | None:intergenic | 45.0% | |
| !! | ACTTAGTTGTGGGTACTGAG+GGG | + | chr4_4:69998365-69998384 | None:intergenic | 45.0% |
| !! | CACTTAGTTGTGGGTACTGA+GGG | + | chr4_4:69998366-69998385 | None:intergenic | 45.0% |
| ! | ACACTTAGTTGTGGGTACTG+AGG | + | chr4_4:69998367-69998386 | None:intergenic | 45.0% |
| CCTGTCCTGTTTGGATATTG+TGG | + | chr4_4:69998440-69998459 | None:intergenic | 45.0% | |
| CCACAATATCCAAACAGGAC+AGG | - | chr4_4:69998437-69998456 | Msa0699360:intron | 45.0% | |
| CTACTTCAACCTGTCCTGTT+TGG | + | chr4_4:69998449-69998468 | None:intergenic | 45.0% | |
| TGAGGTTGAAGATGGCATGT+TGG | - | chr4_4:69998797-69998816 | Msa0699360:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr4_4:69998961-69998980 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr4_4:69998962-69998981 | None:intergenic | 45.0% |
| AAGAAAGGCTCTTACTTGGC+AGG | + | chr4_4:69999074-69999093 | None:intergenic | 45.0% | |
| GGTACAGTGGCTATAGACAA+AGG | + | chr4_4:69999190-69999209 | None:intergenic | 45.0% | |
| GTCTGCAGTCATCCTTCTAT+TGG | + | chr4_4:69999517-69999536 | None:intergenic | 45.0% | |
| ! | AACATCATGGTGGGGAAAAC+TGG | + | chr4_4:69999539-69999558 | None:intergenic | 45.0% |
| GATGCTCAACTTGCGTCATT+TGG | - | chr4_4:69999669-69999688 | Msa0699360:CDS | 45.0% | |
| TCCAGGGCACATACTATTGT+TGG | - | chr4_4:69999729-69999748 | Msa0699360:intron | 45.0% | |
| TCCAACAATAGTATGTGCCC+TGG | + | chr4_4:69999733-69999752 | None:intergenic | 45.0% | |
| TACAGCTTGACGTGTAGAGT+TGG | + | chr4_4:69999953-69999972 | None:intergenic | 45.0% | |
| GCTGTAAGAGCTATTGCATG+AGG | - | chr4_4:69999967-69999986 | Msa0699360:intron | 45.0% | |
| AATTCTACGAAACCGAGCCA+AGG | + | chr4_4:70000286-70000305 | None:intergenic | 45.0% | |
| ATCGTGATGAAGCACAGCAA+TGG | + | chr4_4:70000446-70000465 | None:intergenic | 45.0% | |
| TGCTGTGCTTCATCACGATT+CGG | - | chr4_4:70000447-70000466 | Msa0699360:CDS | 45.0% | |
| GAGGCCTGTTTCAGTAATCT+TGG | - | chr4_4:70000506-70000525 | Msa0699360:CDS | 45.0% | |
| CAGTAATCTTGGGTCTTCTG+TGG | - | chr4_4:70000517-70000536 | Msa0699360:CDS | 45.0% | |
| CAAACCTTGCGCTGAAGTAT+TGG | - | chr4_4:70000604-70000623 | Msa0699360:CDS | 45.0% | |
| GGAGGGAGTAGATTGAAACA+AGG | - | chr4_4:70000940-70000959 | Msa0699360:CDS | 45.0% | |
| !! | GAATTAATTAATTAATTAAT+CGG | + | chr4_4:69996299-69996318 | None:intergenic | 5.0% |
| GTCGAATTCGTCGGCGATTT+CGG | + | chr4_4:69996230-69996249 | None:intergenic | 50.0% | |
| GCGATTGGTATATCCTGGGA+AGG | - | chr4_4:69996428-69996447 | Msa0699360:intron | 50.0% | |
| ATATCCTGGGAAGGCGACAT+TGG | - | chr4_4:69996437-69996456 | Msa0699360:intron | 50.0% | |
| ! | GCGAACAATGACGGAAGTTC+TGG | + | chr4_4:69996607-69996626 | None:intergenic | 50.0% |
| !! | TGCTTTGAGAGCTTCGCGAA+TGG | + | chr4_4:69996646-69996665 | None:intergenic | 50.0% |
| !!! | GGAGCGAGTTTTAGCTAGAG+AGG | - | chr4_4:69997497-69997516 | Msa0699360:intron | 50.0% |
| CGCACATTCTTGAGACGTTG+TGG | + | chr4_4:69997733-69997752 | None:intergenic | 50.0% | |
| CTCTACCAAGGTCCTTCCTT+TGG | + | chr4_4:69997955-69997974 | None:intergenic | 50.0% | |
| CAAAGGAAGGACCTTGGTAG+AGG | - | chr4_4:69997953-69997972 | Msa0699360:CDS | 50.0% | |
| ACCCACAACTAAGGGCAATC+CGG | - | chr4_4:69998178-69998197 | Msa0699360:intron | 50.0% | |
| ACCGGATTGCCCTTAGTTGT+GGG | + | chr4_4:69998182-69998201 | None:intergenic | 50.0% | |
| ACTGAAGCTTCCGCATATGC+AGG | - | chr4_4:69998204-69998223 | Msa0699360:intron | 50.0% | |
| CTGAAGCTTCCGCATATGCA+GGG | - | chr4_4:69998205-69998224 | Msa0699360:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr4_4:69998336-69998355 | Msa0699360:intron | 50.0% | |
| GTGGGCATACTGAGATGGAT+AGG | - | chr4_4:69998625-69998644 | Msa0699360:intron | 50.0% | |
| TTATAGCCGACCCCACTTAG+TGG | - | chr4_4:69998948-69998967 | Msa0699360:intron | 50.0% | |
| TATAGCCGACCCCACTTAGT+GGG | - | chr4_4:69998949-69998968 | Msa0699360:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr4_4:69998957-69998976 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr4_4:69998963-69998982 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr4_4:69998960-69998979 | Msa0699360:intron | 50.0% | |
| ! | AGGTACCGTGATCCAAAGAC+TGG | - | chr4_4:69999242-69999261 | Msa0699360:intron | 50.0% |
| GGTACCGTGATCCAAAGACT+GGG | - | chr4_4:69999243-69999262 | Msa0699360:intron | 50.0% | |
| ACATCCACATGATCGGTCCT+TGG | - | chr4_4:70000266-70000285 | Msa0699360:intron | 50.0% | |
| ! | TTCATCACGATTCGGACCTC+AGG | - | chr4_4:70000455-70000474 | Msa0699360:CDS | 50.0% |
| ! | GGAGGGAGTATACAACTCCA+TGG | + | chr4_4:70000662-70000681 | None:intergenic | 50.0% |
| GTGCGAGCGAGTCAGTACAA+TGG | - | chr4_4:69996024-69996043 | Msa0699360:three_prime_UTR | 55.0% | |
| CGAGCGAGTCAGTACAATGG+AGG | - | chr4_4:69996027-69996046 | Msa0699360:three_prime_UTR | 55.0% | |
| CGGCGATTTCGGCTTCTTCT+TGG | + | chr4_4:69996219-69996238 | None:intergenic | 55.0% | |
| GGCTGTTCTTCATCGGGTTC+AGG | + | chr4_4:69996375-69996394 | None:intergenic | 55.0% | |
| TTAGCCAATGTCGCCTTCCC+AGG | + | chr4_4:69996444-69996463 | None:intergenic | 55.0% | |
| CAACCAGGACGATGATGCGA+AGG | - | chr4_4:69996560-69996579 | Msa0699360:three_prime_UTR | 55.0% | |
| CACCGGATTGCCCTTAGTTG+TGG | + | chr4_4:69998183-69998202 | None:intergenic | 55.0% | |
| ATGCGGAAGCTTCAGTGCAC+CGG | + | chr4_4:69998200-69998219 | None:intergenic | 55.0% | |
| CTTCCTGGACCCTGCATATG+CGG | + | chr4_4:69998217-69998236 | None:intergenic | 55.0% | |
| GCATATGCAGGGTCCAGGAA+GGG | - | chr4_4:69998216-69998235 | Msa0699360:intron | 55.0% | |
| CATATGCAGGGTCCAGGAAG+GGG | - | chr4_4:69998217-69998236 | Msa0699360:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr4_4:69998301-69998320 | None:intergenic | 55.0% | |
| !! | TGGGTACTGAGGGGTAACCT+TGG | + | chr4_4:69998356-69998375 | None:intergenic | 55.0% |
| TGAGTGGAGTATGGGACGAG+TGG | - | chr4_4:69998606-69998625 | Msa0699360:intron | 55.0% | |
| GAGTGGAGTATGGGACGAGT+GGG | - | chr4_4:69998607-69998626 | Msa0699360:intron | 55.0% | |
| GACGAGTGGGCATACTGAGA+TGG | - | chr4_4:69998620-69998639 | Msa0699360:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr4_4:69998955-69998974 | Msa0699360:intron | 55.0% | |
| GCAGCCCAGTCTTTGGATCA+CGG | + | chr4_4:69999250-69999269 | None:intergenic | 55.0% | |
| ! | ATTGGGTGAAGGCACGTGCA+TGG | + | chr4_4:69999785-69999804 | None:intergenic | 55.0% |
| CACATGATCGGTCCTTGGCT+CGG | - | chr4_4:70000271-70000290 | Msa0699360:intron | 55.0% | |
| ! | TCACGATTCGGACCTCAGGT+TGG | - | chr4_4:70000459-70000478 | Msa0699360:CDS | 55.0% |
| ! | CACGATTCGGACCTCAGGTT+GGG | - | chr4_4:70000460-70000479 | Msa0699360:CDS | 55.0% |
| TCGCTCGAGATGCACGATCC+AGG | + | chr4_4:69996093-69996112 | None:intergenic | 60.0% | |
| CGTGCATCTCGAGCGACAAG+AGG | - | chr4_4:69996097-69996116 | Msa0699360:intron | 60.0% | |
| CCTCCTTCGCATCATCGTCC+TGG | + | chr4_4:69996566-69996585 | None:intergenic | 60.0% | |
| CCAGGACGATGATGCGAAGG+AGG | - | chr4_4:69996563-69996582 | Msa0699360:three_prime_UTR | 60.0% | |
| CTTCCGCATATGCAGGGTCC+AGG | - | chr4_4:69998211-69998230 | Msa0699360:intron | 60.0% | |
| CGCATATGCAGGGTCCAGGA+AGG | - | chr4_4:69998215-69998234 | Msa0699360:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+TGG | + | chr4_4:69998232-69998251 | None:intergenic | 60.0% |
| CAGGAAGGGGTCCCACCATT+TGG | - | chr4_4:69998230-69998249 | Msa0699360:intron | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr4_4:69998347-69998366 | None:intergenic | 60.0% | |
| GCGTATGGCAGCCCAGTCTT+TGG | + | chr4_4:69999257-69999276 | None:intergenic | 60.0% | |
| CGAGCCAAGGACCGATCATG+TGG | + | chr4_4:70000273-70000292 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 69996002 | 70001021 | 69996002 | ID=Msa0699360;Name=Msa0699360 |
| chr4_4 | mRNA | 69996002 | 70001021 | 69996002 | ID=Msa0699360-mRNA-1;Parent=Msa0699360;Name=Msa0699360-mRNA-1;_AED=0.05;_eAED=0.05;_QI=41|0.88|0.9|1|0.77|0.7|10|306|370 |
| chr4_4 | exon | 69996002 | 69996079 | 69996002 | ID=Msa0699360-mRNA-1:exon:21134;Parent=Msa0699360-mRNA-1 |
| chr4_4 | exon | 69996355 | 69996441 | 69996355 | ID=Msa0699360-mRNA-1:exon:21133;Parent=Msa0699360-mRNA-1 |
| chr4_4 | exon | 69996547 | 69996877 | 69996547 | ID=Msa0699360-mRNA-1:exon:21132;Parent=Msa0699360-mRNA-1 |
| chr4_4 | exon | 69997693 | 69997779 | 69997693 | ID=Msa0699360-mRNA-1:exon:21131;Parent=Msa0699360-mRNA-1 |
| chr4_4 | exon | 69997945 | 69997987 | 69997945 | ID=Msa0699360-mRNA-1:exon:21130;Parent=Msa0699360-mRNA-1 |
| chr4_4 | exon | 69999276 | 69999344 | 69999276 | ID=Msa0699360-mRNA-1:exon:21129;Parent=Msa0699360-mRNA-1 |
| chr4_4 | exon | 69999429 | 69999548 | 69999429 | ID=Msa0699360-mRNA-1:exon:21128;Parent=Msa0699360-mRNA-1 |
| chr4_4 | exon | 69999658 | 69999730 | 69999658 | ID=Msa0699360-mRNA-1:exon:21127;Parent=Msa0699360-mRNA-1 |
| chr4_4 | exon | 70000349 | 70000654 | 70000349 | ID=Msa0699360-mRNA-1:exon:21126;Parent=Msa0699360-mRNA-1 |
| chr4_4 | exon | 70000756 | 70001021 | 70000756 | ID=Msa0699360-mRNA-1:exon:21125;Parent=Msa0699360-mRNA-1 |
| chr4_4 | five_prime_UTR | 70000981 | 70001021 | 70000981 | ID=Msa0699360-mRNA-1:five_prime_utr;Parent=Msa0699360-mRNA-1 |
| chr4_4 | CDS | 70000756 | 70000980 | 70000756 | ID=Msa0699360-mRNA-1:cds;Parent=Msa0699360-mRNA-1 |
| chr4_4 | CDS | 70000349 | 70000654 | 70000349 | ID=Msa0699360-mRNA-1:cds;Parent=Msa0699360-mRNA-1 |
| chr4_4 | CDS | 69999658 | 69999730 | 69999658 | ID=Msa0699360-mRNA-1:cds;Parent=Msa0699360-mRNA-1 |
| chr4_4 | CDS | 69999429 | 69999548 | 69999429 | ID=Msa0699360-mRNA-1:cds;Parent=Msa0699360-mRNA-1 |
| chr4_4 | CDS | 69999276 | 69999344 | 69999276 | ID=Msa0699360-mRNA-1:cds;Parent=Msa0699360-mRNA-1 |
| chr4_4 | CDS | 69997945 | 69997987 | 69997945 | ID=Msa0699360-mRNA-1:cds;Parent=Msa0699360-mRNA-1 |
| chr4_4 | CDS | 69997693 | 69997779 | 69997693 | ID=Msa0699360-mRNA-1:cds;Parent=Msa0699360-mRNA-1 |
| chr4_4 | CDS | 69996688 | 69996877 | 69996688 | ID=Msa0699360-mRNA-1:cds;Parent=Msa0699360-mRNA-1 |
| chr4_4 | three_prime_UTR | 69996547 | 69996687 | 69996547 | ID=Msa0699360-mRNA-1:three_prime_utr;Parent=Msa0699360-mRNA-1 |
| chr4_4 | three_prime_UTR | 69996355 | 69996441 | 69996355 | ID=Msa0699360-mRNA-1:three_prime_utr;Parent=Msa0699360-mRNA-1 |
| chr4_4 | three_prime_UTR | 69996002 | 69996079 | 69996002 | ID=Msa0699360-mRNA-1:three_prime_utr;Parent=Msa0699360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
