Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381120 | GAU46370.1 | 81.818 | 209 | 35 | 2 | 1 | 208 | 1 | 207 | 9.44e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381120 | A0A2Z6P9U3 | 81.818 | 209 | 35 | 2 | 1 | 208 | 1 | 207 | 4.51e-117 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076040 | Msa1381120 | 0.815381 | 9.517896e-52 | -8.615850e-47 |
| Msa0082280 | Msa1381120 | 0.807726 | 4.390162e-50 | -8.615850e-47 |
| Msa0108550 | Msa1381120 | 0.809464 | 1.867661e-50 | -8.615850e-47 |
| Msa1363860 | Msa1381120 | 0.835219 | 1.905743e-56 | -8.615850e-47 |
| Msa1365150 | Msa1381120 | 0.803148 | 4.002367e-49 | -8.615850e-47 |
| Msa1370860 | Msa1381120 | 0.815153 | 1.069436e-51 | -8.615850e-47 |
| Msa1380970 | Msa1381120 | 0.801231 | 9.925767e-49 | -8.615850e-47 |
| Msa1381120 | Msa1421560 | 0.800875 | 1.173895e-48 | -8.615850e-47 |
| Msa1381120 | Msa1438640 | 0.816724 | 4.771347e-52 | -8.615850e-47 |
| Msa1381120 | Msa1442850 | 0.826177 | 3.129893e-54 | -8.615850e-47 |
| Msa1381120 | Msa1443930 | 0.817739 | 2.820525e-52 | -8.615850e-47 |
| Msa1381120 | Msa1462860 | 0.816769 | 4.661188e-52 | -8.615850e-47 |
| Msa1381120 | Msa1465080 | 0.820530 | 6.533434e-53 | -8.615850e-47 |
| Msa0659030 | Msa1381120 | 0.817184 | 3.762171e-52 | -8.615850e-47 |
| Msa0683780 | Msa1381120 | 0.808322 | 3.278567e-50 | -8.615850e-47 |
| Msa0687630 | Msa1381120 | 0.817704 | 2.872672e-52 | -8.615850e-47 |
| Msa0699360 | Msa1381120 | 0.813200 | 2.887059e-51 | -8.615850e-47 |
| Msa0705000 | Msa1381120 | 0.826404 | 2.763579e-54 | -8.615850e-47 |
| Msa0705040 | Msa1381120 | 0.821879 | 3.192891e-53 | -8.615850e-47 |
| Msa0734960 | Msa1381120 | 0.808301 | 3.313276e-50 | -8.615850e-47 |
| Msa0785130 | Msa1381120 | 0.802505 | 5.435631e-49 | -8.615850e-47 |
| Msa0788770 | Msa1381120 | 0.809135 | 2.197022e-50 | -8.615850e-47 |
| Msa0797750 | Msa1381120 | 0.815351 | 9.665211e-52 | -8.615850e-47 |
| Msa0819540 | Msa1381120 | 0.823651 | 1.234963e-53 | -8.615850e-47 |
| Msa0824640 | Msa1381120 | 0.830035 | 3.684336e-55 | -8.615850e-47 |
| Msa0174770 | Msa1381120 | 0.813486 | 2.498324e-51 | -8.615850e-47 |
| Msa0181610 | Msa1381120 | 0.831347 | 1.757217e-55 | -8.615850e-47 |
| Msa0185400 | Msa1381120 | 0.979012 | 4.834842e-147 | -8.615850e-47 |
| Msa1227690 | Msa1381120 | 0.851111 | 1.097756e-60 | -8.615850e-47 |
| Msa1235250 | Msa1381120 | 0.826797 | 2.227095e-54 | -8.615850e-47 |
| Msa1252190 | Msa1381120 | 0.808801 | 2.591157e-50 | -8.615850e-47 |
| Msa1258710 | Msa1381120 | 0.801387 | 9.222403e-49 | -8.615850e-47 |
| Msa1270620 | Msa1381120 | 0.812928 | 3.312217e-51 | -8.615850e-47 |
| Msa1270690 | Msa1381120 | 0.811095 | 8.307911e-51 | -8.615850e-47 |
| Msa1294840 | Msa1381120 | 0.815541 | 8.767500e-52 | -8.615850e-47 |
| Msa1306990 | Msa1381120 | 0.816118 | 6.520115e-52 | -8.615850e-47 |
| Msa1307950 | Msa1381120 | 0.817710 | 2.863291e-52 | -8.615850e-47 |
| Msa0394400 | Msa1381120 | 0.811096 | 8.306637e-51 | -8.615850e-47 |
| Msa0413450 | Msa1381120 | 0.811737 | 6.028103e-51 | -8.615850e-47 |
| Msa0980940 | Msa1381120 | 0.802773 | 4.785304e-49 | -8.615850e-47 |
| Msa1035230 | Msa1381120 | 0.800740 | 1.250661e-48 | -8.615850e-47 |
| Msa1037510 | Msa1381120 | 0.816628 | 5.013282e-52 | -8.615850e-47 |
| Msa0337510 | Msa1381120 | 0.817097 | 3.933827e-52 | -8.615850e-47 |
| Msa1126510 | Msa1381120 | 0.811382 | 7.199913e-51 | -8.615850e-47 |
| Msa1126770 | Msa1381120 | 0.813055 | 3.105823e-51 | -8.615850e-47 |
| Msa1131560 | Msa1381120 | 0.827308 | 1.680392e-54 | -8.615850e-47 |
| Msa1166330 | Msa1381120 | 0.812085 | 5.061647e-51 | -8.615850e-47 |
| Msa1166340 | Msa1381120 | 0.812331 | 4.474094e-51 | -8.615850e-47 |
| Msa1166870 | Msa1381120 | 0.800163 | 1.639488e-48 | -8.615850e-47 |
| Msa1174530 | Msa1381120 | 0.810425 | 1.159925e-50 | -8.615850e-47 |
| Msa1179950 | Msa1381120 | 0.806808 | 6.872526e-50 | -8.615850e-47 |
| Msa1179980 | Msa1381120 | 0.812576 | 3.954770e-51 | -8.615850e-47 |
| Msa1184370 | Msa1381120 | 0.843141 | 1.681769e-58 | -8.615850e-47 |
| Msa1199290 | Msa1381120 | 0.815111 | 1.092669e-51 | -8.615850e-47 |
| Msa1201830 | Msa1381120 | 0.824080 | 9.794314e-54 | -8.615850e-47 |
| Msa1204850 | Msa1381120 | 0.809500 | 1.835386e-50 | -8.615850e-47 |
| Msa0484290 | Msa1381120 | 0.814896 | 1.219479e-51 | -8.615850e-47 |
| Msa0505150 | Msa1381120 | 0.834667 | 2.624660e-56 | -8.615850e-47 |
| Msa0524500 | Msa1381120 | 0.814860 | 1.242432e-51 | -8.615850e-47 |
| Msa0552810 | Msa1381120 | 0.804471 | 2.125726e-49 | -8.615850e-47 |
| Msa0581070 | Msa1381120 | 0.829234 | 5.767935e-55 | -8.615850e-47 |
| Msa0593700 | Msa1381120 | 0.800772 | 1.232293e-48 | -8.615850e-47 |
| Msa0864010 | Msa1381120 | 0.834580 | 2.760286e-56 | -8.615850e-47 |
| Msa0888940 | Msa1381120 | 0.806401 | 8.373484e-50 | -8.615850e-47 |
| Msa0897400 | Msa1381120 | 0.803421 | 3.513598e-49 | -8.615850e-47 |
| Msa0898760 | Msa1381120 | 0.820616 | 6.244187e-53 | -8.615850e-47 |
| Msa0928120 | Msa1381120 | 0.800314 | 1.527228e-48 | -8.615850e-47 |
| Msa0943170 | Msa1381120 | 0.859672 | 3.518260e-63 | -8.615850e-47 |
| Msa0963020 | Msa1381120 | 0.818257 | 2.154215e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381120 | MtrunA17_Chr6g0488901 | 89.767 | 215 | 14 | 4 | 1 | 208 | 1 | 214 | 2.82e-120 | 340 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381120 | AT5G58110.1 | 58.163 | 196 | 79 | 2 | 14 | 208 | 3 | 196 | 7.97e-75 | 224 |
Find 44 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCGTCGTCGTATACTTAT+TGG | 0.221609 | tig0020422:+84371 | Msa1381120:CDS |
| TGTTACTTCTTCTCATCAAT+TGG | 0.222046 | tig0020422:+84462 | Msa1381120:CDS |
| CTTTGAGTTCTTGTTCAAAT+TGG | 0.226142 | tig0020422:-87244 | None:intergenic |
| TTGGGCTATTCCTAGAATTA+AGG | 0.262161 | tig0020422:+84534 | Msa1381120:CDS |
| ATGACGTCACTCCTCCATTA+AGG | 0.273220 | tig0020422:-84318 | None:intergenic |
| AGTAAGTAAACCTTAATTCT+AGG | 0.282854 | tig0020422:-84544 | None:intergenic |
| GAATCAATGGAGTCCCTTAA+TGG | 0.345099 | tig0020422:+84304 | Msa1381120:exon |
| GTTACTTCTTCTCATCAATT+GGG | 0.369463 | tig0020422:+84463 | Msa1381120:CDS |
| CTCATCAATTGGGTTCTGCT+TGG | 0.379523 | tig0020422:+84473 | Msa1381120:CDS |
| GGAGATCTCATTTGGTGAAC+TGG | 0.386323 | tig0020422:+85201 | Msa1381120:CDS |
| TGGTGAACTGGATGACTTGC+AGG | 0.392831 | tig0020422:+85213 | Msa1381120:CDS |
| ACTAACATCTCCAACACATT+TGG | 0.402013 | tig0020422:-84719 | None:intergenic |
| CTTGGAATCGTGCTGGCACT+TGG | 0.404894 | tig0020422:+84491 | Msa1381120:CDS |
| AGCGTCGTCGTATACTTATT+GGG | 0.412195 | tig0020422:+84372 | Msa1381120:CDS |
| GATGTTCCGGAGATCTCATT+TGG | 0.428887 | tig0020422:+85193 | Msa1381120:CDS |
| CAGGAATTGCTCATTTCTGT+GGG | 0.441867 | tig0020422:+84646 | Msa1381120:intron |
| TCTGCCAGAGGAGAATGATA+TGG | 0.453679 | tig0020422:-84671 | None:intergenic |
| TCAGGAATTGCTCATTTCTG+TGG | 0.456847 | tig0020422:+84645 | Msa1381120:intron |
| TGACGTCACTCCTCCATTAA+GGG | 0.458538 | tig0020422:-84317 | None:intergenic |
| AAGAGAAATCTCTTAACCAT+TGG | 0.487347 | tig0020422:+84515 | Msa1381120:CDS |
| AGAGAAATCTCTTAACCATT+GGG | 0.488159 | tig0020422:+84516 | Msa1381120:CDS |
| AAGAACTCAAAGATAGATAG+TGG | 0.488748 | tig0020422:+87255 | Msa1381120:three_prime_UTR |
| AAGAACTCAAAGATAGATAG+TGG | 0.501118 | tig0020422:+87213 | Msa1381120:CDS |
| GGCGTTTGTTGAAGAATCAA+TGG | 0.504390 | tig0020422:+84291 | Msa1381120:exon |
| GGTTCCATATCATTCTCCTC+TGG | 0.510440 | tig0020422:+84667 | Msa1381120:CDS |
| TACAATTGGATACAGGGGAA+TGG | 0.527980 | tig0020422:+85131 | Msa1381120:intron |
| GGTTCTGCTTGGAATCGTGC+TGG | 0.531758 | tig0020422:+84484 | Msa1381120:CDS |
| GTATTTATTATAGGCACTTG+TGG | 0.538772 | tig0020422:+84954 | Msa1381120:intron |
| ATATCATTCTCCTCTGGCAG+AGG | 0.546286 | tig0020422:+84673 | Msa1381120:CDS |
| AATTGAGAACAACGTCTACA+TGG | 0.561907 | tig0020422:-87284 | None:intergenic |
| GAACTGTCCTTAAAAGTGAA+AGG | 0.563372 | tig0020422:+85015 | Msa1381120:CDS |
| AGTTCACCAAATGAGATCTC+CGG | 0.570544 | tig0020422:-85199 | None:intergenic |
| CAAGATGTAACCAAATGTGT+TGG | 0.572691 | tig0020422:+84709 | Msa1381120:CDS |
| TCTTGATGAGAGATATCCGA+TGG | 0.586576 | tig0020422:-87119 | None:intergenic |
| GTCATCGTCGTCGAAATCGA+AGG | 0.588472 | tig0020422:+84336 | Msa1381120:CDS |
| TTGTGCTGTGCCTCTGCCAG+AGG | 0.600109 | tig0020422:-84683 | None:intergenic |
| TTGGAATCGTGCTGGCACTT+GGG | 0.601928 | tig0020422:+84492 | Msa1381120:CDS |
| TTTATTATAGGCACTTGTGG+TGG | 0.610822 | tig0020422:+84957 | Msa1381120:intron |
| ACAGGGGAATGGATTATACA+AGG | 0.613504 | tig0020422:+85142 | Msa1381120:intron |
| AGTGAGACTTAGTGAACCAT+CGG | 0.617002 | tig0020422:+87103 | Msa1381120:CDS |
| TTGTACTCGGATCGATCTAG+AGG | 0.622502 | tig0020422:+84219 | None:intergenic |
| TAATTCTAGGAATAGCCCAA+TGG | 0.650376 | tig0020422:-84531 | None:intergenic |
| TCAATGGAGTCCCTTAATGG+AGG | 0.676249 | tig0020422:+84307 | Msa1381120:exon |
| TGAGTGAGTTGAAGTACGAG+CGG | 0.714496 | tig0020422:+84270 | Msa1381120:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTCACTATTATAAAT+TGG | - | tig0020422:85821-85840 | None:intergenic | 10.0% |
| !!! | TAAAATTCAGTATTTAAAAT+TGG | - | tig0020422:85938-85957 | None:intergenic | 10.0% |
| !!! | TTGATTATTTCAATTTTAAC+TGG | + | tig0020422:85981-86000 | Msa1381120:intron | 15.0% |
| !! | AAAGAATTAATTAATGTACA+TGG | - | tig0020422:86421-86440 | None:intergenic | 15.0% |
| !! | ATATAAAATAAATAAGGGTA+TGG | - | tig0020422:86448-86467 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTCATTATACAGA+TGG | + | tig0020422:87079-87098 | Msa1381120:intron | 15.0% |
| !! | TAGAATTTGAATTTGAAGAT+AGG | - | tig0020422:84769-84788 | None:intergenic | 20.0% |
| !! | CAAAAAATGAAACAAAAGAA+TGG | + | tig0020422:84871-84890 | Msa1381120:intron | 20.0% |
| !!! | TATAAGTGATGTTTTACAAT+TGG | + | tig0020422:85117-85136 | Msa1381120:intron | 20.0% |
| !! | GTGTTAAAATCAATAATAAG+AGG | - | tig0020422:85241-85260 | None:intergenic | 20.0% |
| !! | ATTTAAATCAATATCCTTCT+CGG | - | tig0020422:85587-85606 | None:intergenic | 20.0% |
| !!! | ATTTGGTGAGAATTATAATT+GGG | + | tig0020422:85754-85773 | Msa1381120:intron | 20.0% |
| !! | TTCACTATTATAAATTGGTA+GGG | - | tig0020422:85816-85835 | None:intergenic | 20.0% |
| !! | TTTCACTATTATAAATTGGT+AGG | - | tig0020422:85817-85836 | None:intergenic | 20.0% |
| !!! | TTCAGTATTTAAAATTGGTA+GGG | - | tig0020422:85933-85952 | None:intergenic | 20.0% |
| !!! | ATTCAGTATTTAAAATTGGT+AGG | - | tig0020422:85934-85953 | None:intergenic | 20.0% |
| !!! | ATTTTTGTACATAACATGTT+TGG | + | tig0020422:86240-86259 | Msa1381120:intron | 20.0% |
| !! | AATCGATATAATGATCAAAA+GGG | - | tig0020422:86777-86796 | None:intergenic | 20.0% |
| !! | AACGGTTATATAAATCAATA+CGG | - | tig0020422:86975-86994 | None:intergenic | 20.0% |
| ! | AGTAAGTAAACCTTAATTCT+AGG | - | tig0020422:84547-84566 | None:intergenic | 25.0% |
| !!! | TCATTTTGTTACTTTGTTTC+AGG | + | tig0020422:84627-84646 | Msa1381120:intron | 25.0% |
| !! | ATGTTTTACAATTGGATACA+GGG | + | tig0020422:85125-85144 | Msa1381120:intron | 25.0% |
| ! | AAGGAAATAAAAAGTTGCTT+GGG | + | tig0020422:85161-85180 | Msa1381120:CDS | 25.0% |
| !!! | GAGAAGGATATTGATTTAAA+TGG | + | tig0020422:85586-85605 | Msa1381120:intron | 25.0% |
| ! | TCATTCACACTAGATTATTA+TGG | + | tig0020422:85626-85645 | Msa1381120:intron | 25.0% |
| ! | AAGCATTTGTATTGAGAATA+GGG | + | tig0020422:85711-85730 | Msa1381120:intron | 25.0% |
| !! | CATTTGGTGAGAATTATAAT+TGG | + | tig0020422:85753-85772 | Msa1381120:intron | 25.0% |
| ! | TGAGAATTATAATTGGGATT+AGG | + | tig0020422:85760-85779 | Msa1381120:intron | 25.0% |
| ! | GAGAATTATAATTGGGATTA+GGG | + | tig0020422:85761-85780 | Msa1381120:intron | 25.0% |
| !!! | ACACTTACAATTCTAGTTTT+GGG | - | tig0020422:86049-86068 | None:intergenic | 25.0% |
| !!! | TACACTTACAATTCTAGTTT+TGG | - | tig0020422:86050-86069 | None:intergenic | 25.0% |
| ! | GAACACACAAAAATTTATGT+TGG | + | tig0020422:86096-86115 | Msa1381120:intron | 25.0% |
| !!! | AGACAAATTTTTTTCCCAAA+GGG | - | tig0020422:86372-86391 | None:intergenic | 25.0% |
| ! | GGAATTAAGAAAATTGAAAG+TGG | - | tig0020422:86576-86595 | None:intergenic | 25.0% |
| !! | TCTATTTTCCTTTGTACTAT+AGG | + | tig0020422:86700-86719 | Msa1381120:intron | 25.0% |
| ! | GAATCGATATAATGATCAAA+AGG | - | tig0020422:86778-86797 | None:intergenic | 25.0% |
| ! | TGTTACTTCTTCTCATCAAT+TGG | + | tig0020422:84462-84481 | Msa1381120:CDS | 30.0% |
| GTTACTTCTTCTCATCAATT+GGG | + | tig0020422:84463-84482 | Msa1381120:CDS | 30.0% | |
| AAGAGAAATCTCTTAACCAT+TGG | + | tig0020422:84515-84534 | Msa1381120:CDS | 30.0% | |
| AGAGAAATCTCTTAACCATT+GGG | + | tig0020422:84516-84535 | Msa1381120:CDS | 30.0% | |
| GAATGAAAGAGTAATTGACT+CGG | - | tig0020422:84596-84615 | None:intergenic | 30.0% | |
| GTATTTATTATAGGCACTTG+TGG | + | tig0020422:84954-84973 | Msa1381120:intron | 30.0% | |
| GCAAAGTAAAGAAGAACAAT+TGG | - | tig0020422:85079-85098 | None:intergenic | 30.0% | |
| ! | GATGTTTTACAATTGGATAC+AGG | + | tig0020422:85124-85143 | Msa1381120:intron | 30.0% |
| ! | TGTTTTACAATTGGATACAG+GGG | + | tig0020422:85126-85145 | Msa1381120:intron | 30.0% |
| CAAGGAAATAAAAAGTTGCT+TGG | + | tig0020422:85160-85179 | Msa1381120:CDS | 30.0% | |
| AGGAAATAAAAAGTTGCTTG+GGG | + | tig0020422:85162-85181 | Msa1381120:CDS | 30.0% | |
| !!! | TGGATTTTGGGTTTTTTGTA+TGG | + | tig0020422:85312-85331 | Msa1381120:intron | 30.0% |
| GGCATAAACCAAATGAAAAA+AGG | - | tig0020422:85343-85362 | None:intergenic | 30.0% | |
| !! | TGTCGTAATTTGTTCTGTTA+CGG | - | tig0020422:85364-85383 | None:intergenic | 30.0% |
| TAAAATTGTCTTCCGTGATT+TGG | + | tig0020422:85481-85500 | Msa1381120:intron | 30.0% | |
| AAAATTGTCTTCCGTGATTT+GGG | + | tig0020422:85482-85501 | Msa1381120:intron | 30.0% | |
| ! | TATCAGTGAGATTAGCTATA+AGG | - | tig0020422:85660-85679 | None:intergenic | 30.0% |
| CAAGCATTTGTATTGAGAAT+AGG | + | tig0020422:85710-85729 | Msa1381120:intron | 30.0% | |
| AATTATAATTGGGATTAGGG+AGG | + | tig0020422:85764-85783 | Msa1381120:intron | 30.0% | |
| ATTATAATTGGGATTAGGGA+GGG | + | tig0020422:85765-85784 | Msa1381120:intron | 30.0% | |
| ! | TTAGATCTCTTTTTGTGGTT+TGG | + | tig0020422:85790-85809 | Msa1381120:intron | 30.0% |
| AATACTCCTTGTATTATACG+TGG | + | tig0020422:85902-85921 | Msa1381120:intron | 30.0% | |
| TCAAAAGTTGTCTTCAAAAC+TGG | - | tig0020422:86151-86170 | None:intergenic | 30.0% | |
| AAGATCATAATCTATGTGGT+GGG | - | tig0020422:86301-86320 | None:intergenic | 30.0% | |
| AAAGATCATAATCTATGTGG+TGG | - | tig0020422:86302-86321 | None:intergenic | 30.0% | |
| CAGAAAGATCATAATCTATG+TGG | - | tig0020422:86305-86324 | None:intergenic | 30.0% | |
| CTTAATTATAAGACCCCTTT+GGG | + | tig0020422:86355-86374 | Msa1381120:intron | 30.0% | |
| !!! | GACAAATTTTTTTCCCAAAG+GGG | - | tig0020422:86371-86390 | None:intergenic | 30.0% |
| !!! | GAGACAAATTTTTTTCCCAA+AGG | - | tig0020422:86373-86392 | None:intergenic | 30.0% |
| ATGTACATGGAAATAGCAAA+GGG | - | tig0020422:86408-86427 | None:intergenic | 30.0% | |
| AATGTACATGGAAATAGCAA+AGG | - | tig0020422:86409-86428 | None:intergenic | 30.0% | |
| !!! | ATTCCCGTTATTTTTCCAAA+AGG | + | tig0020422:86591-86610 | Msa1381120:intron | 30.0% |
| !!! | TTCCCGTTATTTTTCCAAAA+GGG | + | tig0020422:86592-86611 | Msa1381120:intron | 30.0% |
| ACTTCAAAATCAACTACAAC+AGG | - | tig0020422:86676-86695 | None:intergenic | 30.0% | |
| AAAGAATGCCTATAGTACAA+AGG | - | tig0020422:86711-86730 | None:intergenic | 30.0% | |
| TACTATAGGCATTCTTTACA+AGG | + | tig0020422:86714-86733 | Msa1381120:intron | 30.0% | |
| !! | AGGGCTTTATTTGGAAAATT+TGG | - | tig0020422:86829-86848 | None:intergenic | 30.0% |
| !! | GTAAGAATAAGGGCTTTATT+TGG | - | tig0020422:86838-86857 | None:intergenic | 30.0% |
| GGTTCAATAGGTAAGAATAA+GGG | - | tig0020422:86848-86867 | None:intergenic | 30.0% | |
| !! | AAAAGAATAAGGGTTGATGT+AGG | - | tig0020422:86880-86899 | None:intergenic | 30.0% |
| CGAGTACACAAAAAGAATAA+GGG | - | tig0020422:86890-86909 | None:intergenic | 30.0% | |
| ACGAGTACACAAAAAGAATA+AGG | - | tig0020422:86891-86910 | None:intergenic | 30.0% | |
| TGTGTACTCGTTTAATCATT+AGG | + | tig0020422:86900-86919 | Msa1381120:intron | 30.0% | |
| GTGTACTCGTTTAATCATTA+GGG | + | tig0020422:86901-86920 | Msa1381120:intron | 30.0% | |
| TCGTTTAATCATTAGGGTTA+GGG | + | tig0020422:86907-86926 | Msa1381120:intron | 30.0% | |
| AAGAACTCAAAGATAGATAG+TGG | + | tig0020422:87213-87232 | Msa1381120:CDS | 30.0% | |
| ! | CTTTGAGTTCTTGTTCAAAT+TGG | - | tig0020422:87205-87224 | None:intergenic | 30.0% |
| AAGAACTCAAAGATAGATAG+TGG | + | tig0020422:87213-87232 | Msa1381120:CDS | 30.0% | |
| ! | TAATTCTAGGAATAGCCCAA+TGG | - | tig0020422:84534-84553 | None:intergenic | 35.0% |
| TTGGGCTATTCCTAGAATTA+AGG | + | tig0020422:84534-84553 | Msa1381120:CDS | 35.0% | |
| CAAGATGTAACCAAATGTGT+TGG | + | tig0020422:84709-84728 | Msa1381120:CDS | 35.0% | |
| ACTAACATCTCCAACACATT+TGG | - | tig0020422:84722-84741 | None:intergenic | 35.0% | |
| TTTATTATAGGCACTTGTGG+TGG | + | tig0020422:84957-84976 | Msa1381120:intron | 35.0% | |
| GAACTGTCCTTAAAAGTGAA+AGG | + | tig0020422:85015-85034 | Msa1381120:CDS | 35.0% | |
| !! | TGACTCACCTTTCACTTTTA+AGG | - | tig0020422:85025-85044 | None:intergenic | 35.0% |
| ATTTACCTTACTCTTCGTGT+TGG | + | tig0020422:85044-85063 | Msa1381120:intron | 35.0% | |
| GGAAATAAAAAGTTGCTTGG+GGG | + | tig0020422:85163-85182 | Msa1381120:CDS | 35.0% | |
| GAAATAAAAAGTTGCTTGGG+GGG | + | tig0020422:85164-85183 | Msa1381120:CDS | 35.0% | |
| TTACATGTCTAGACGTTGAT+TGG | + | tig0020422:85292-85311 | Msa1381120:intron | 35.0% | |
| !! | TCTAGACGTTGATTGGATTT+TGG | + | tig0020422:85299-85318 | Msa1381120:intron | 35.0% |
| !! | CTAGACGTTGATTGGATTTT+GGG | + | tig0020422:85300-85319 | Msa1381120:intron | 35.0% |
| !!! | TGGTTCGTCCTTTTTTCATT+TGG | + | tig0020422:85332-85351 | Msa1381120:intron | 35.0% |
| AATTACGACACTATGCTAGT+AGG | + | tig0020422:85374-85393 | Msa1381120:intron | 35.0% | |
| TGTTCTCCCAATATATGCAT+TGG | + | tig0020422:85405-85424 | Msa1381120:intron | 35.0% | |
| CTAATCTCACTGATAGAAAC+TGG | + | tig0020422:85665-85684 | Msa1381120:intron | 35.0% | |
| TGAGAAGGATGGTATTCATT+TGG | + | tig0020422:85737-85756 | Msa1381120:intron | 35.0% | |
| !!! | GGGTTTTAGATCTCTTTTTG+TGG | + | tig0020422:85785-85804 | Msa1381120:intron | 35.0% |
| TTGTCTTCAAAACTGGATGT+AGG | - | tig0020422:86144-86163 | None:intergenic | 35.0% | |
| ! | ATAATCTATGTGGTGGGATA+AGG | - | tig0020422:86295-86314 | None:intergenic | 35.0% |
| ! | AGGGGTCTTATAATTAAGGA+CGG | - | tig0020422:86353-86372 | None:intergenic | 35.0% |
| ! | CCAAAGGGGTCTTATAATTA+AGG | - | tig0020422:86357-86376 | None:intergenic | 35.0% |
| CCTTAATTATAAGACCCCTT+TGG | + | tig0020422:86354-86373 | Msa1381120:intron | 35.0% | |
| TGTACATGGAAATAGCAAAG+GGG | - | tig0020422:86407-86426 | None:intergenic | 35.0% | |
| AAACCAACTCTCTCTCTTAA+AGG | + | tig0020422:86508-86527 | Msa1381120:intron | 35.0% | |
| ! | TATCCTTTAAGAGAGAGAGT+TGG | - | tig0020422:86514-86533 | None:intergenic | 35.0% |
| AAATCAACTACAACAGGACA+TGG | - | tig0020422:86670-86689 | None:intergenic | 35.0% | |
| TAATGATCAAAAGGGTCAAC+TGG | - | tig0020422:86769-86788 | None:intergenic | 35.0% | |
| !! | CATTAATGCTGGTGGATTAA+GGG | - | tig0020422:86806-86825 | None:intergenic | 35.0% |
| AAATTTGGCATTAATGCTGG+TGG | - | tig0020422:86814-86833 | None:intergenic | 35.0% | |
| GGAAAATTTGGCATTAATGC+TGG | - | tig0020422:86817-86836 | None:intergenic | 35.0% | |
| GGGTTCAATAGGTAAGAATA+AGG | - | tig0020422:86849-86868 | None:intergenic | 35.0% | |
| CTCGTTTAATCATTAGGGTT+AGG | + | tig0020422:86906-86925 | Msa1381120:intron | 35.0% | |
| GAGTTAATAACACGTGCAAA+CGG | - | tig0020422:86993-87012 | None:intergenic | 35.0% | |
| !!! | AGCTATTTTTACAGCCTGTT+CGG | + | tig0020422:87168-87187 | Msa1381120:CDS | 35.0% |
| ! | GGCGTTTGTTGAAGAATCAA+TGG | + | tig0020422:84291-84310 | Msa1381120:exon | 40.0% |
| GAATCAATGGAGTCCCTTAA+TGG | + | tig0020422:84304-84323 | Msa1381120:exon | 40.0% | |
| AGCGTCGTCGTATACTTATT+GGG | + | tig0020422:84372-84391 | Msa1381120:CDS | 40.0% | |
| ! | AGCTTTTGTGGAACAGGTAA+AGG | - | tig0020422:84424-84443 | None:intergenic | 40.0% |
| ! | GATTGTTGCTGTAGCTTTTG+TGG | - | tig0020422:84436-84455 | None:intergenic | 40.0% |
| !! | AAAGAGTAATTGACTCGGTG+TGG | - | tig0020422:84591-84610 | None:intergenic | 40.0% |
| TCAGGAATTGCTCATTTCTG+TGG | + | tig0020422:84645-84664 | Msa1381120:intron | 40.0% | |
| CAGGAATTGCTCATTTCTGT+GGG | + | tig0020422:84646-84665 | Msa1381120:intron | 40.0% | |
| TACAATTGGATACAGGGGAA+TGG | + | tig0020422:85131-85150 | Msa1381120:intron | 40.0% | |
| !! | ACAGGGGAATGGATTATACA+AGG | + | tig0020422:85142-85161 | Msa1381120:intron | 40.0% |
| AGTTCACCAAATGAGATCTC+CGG | - | tig0020422:85202-85221 | None:intergenic | 40.0% | |
| !!! | CACTTTTCAGACACTGACTT+TGG | + | tig0020422:85258-85277 | Msa1381120:intron | 40.0% |
| !! | TCAGACACTGACTTTGGAAA+TGG | + | tig0020422:85264-85283 | Msa1381120:intron | 40.0% |
| CGTGCACCAATGCATATATT+GGG | - | tig0020422:85414-85433 | None:intergenic | 40.0% | |
| ACGTGCACCAATGCATATAT+TGG | - | tig0020422:85415-85434 | None:intergenic | 40.0% | |
| CTTAATAGCCACACATGTTG+TGG | + | tig0020422:85449-85468 | Msa1381120:intron | 40.0% | |
| ! | CATCTTTTCCACAACATGTG+TGG | - | tig0020422:85460-85479 | None:intergenic | 40.0% |
| CTACATACAAGCCCAAATCA+CGG | - | tig0020422:85496-85515 | None:intergenic | 40.0% | |
| GATTTGGGCTTGTATGTAGA+AGG | + | tig0020422:85497-85516 | Msa1381120:intron | 40.0% | |
| GGGAGATCAAGAAAAACCTT+AGG | + | tig0020422:85553-85572 | Msa1381120:intron | 40.0% | |
| ! | TCACTGATAGAAACTGGTTC+AGG | + | tig0020422:85671-85690 | Msa1381120:intron | 40.0% |
| GCGAAACCACGTATAATACA+AGG | - | tig0020422:85911-85930 | None:intergenic | 40.0% | |
| GTTAAGCCACTAAAGTCTTG+TGG | + | tig0020422:86118-86137 | Msa1381120:intron | 40.0% | |
| TTAAGGACGGAGGTAGTAAT+TGG | - | tig0020422:86340-86359 | None:intergenic | 40.0% | |
| ! | GGTCTTATAATTAAGGACGG+AGG | - | tig0020422:86350-86369 | None:intergenic | 40.0% |
| !! | GGCCCTTTTGGAAAAATAAC+GGG | - | tig0020422:86597-86616 | None:intergenic | 40.0% |
| !! | GGGCCCTTTTGGAAAAATAA+CGG | - | tig0020422:86598-86617 | None:intergenic | 40.0% |
| TCCAAAAGGGCCCTATAATT+AGG | + | tig0020422:86605-86624 | Msa1381120:intron | 40.0% | |
| CCAAAAGGGCCCTATAATTA+GGG | + | tig0020422:86606-86625 | Msa1381120:intron | 40.0% | |
| TACCTCCGTCCCTAATTATA+GGG | - | tig0020422:86618-86637 | None:intergenic | 40.0% | |
| AACTACAACAGGACATGGAT+TGG | - | tig0020422:86665-86684 | None:intergenic | 40.0% | |
| !! | GCATTAATGCTGGTGGATTA+AGG | - | tig0020422:86807-86826 | None:intergenic | 40.0% |
| AGGACAATGAAGGGTTCAAT+AGG | - | tig0020422:86860-86879 | None:intergenic | 40.0% | |
| ! | GGTTGATGTAGGACAATGAA+GGG | - | tig0020422:86869-86888 | None:intergenic | 40.0% |
| AGTGAGACTTAGTGAACCAT+CGG | + | tig0020422:87103-87122 | Msa1381120:CDS | 40.0% | |
| TCTTGATGAGAGATATCCGA+TGG | - | tig0020422:87122-87141 | None:intergenic | 40.0% | |
| !!! | GCTATTTTTACAGCCTGTTC+GGG | + | tig0020422:87169-87188 | Msa1381120:CDS | 40.0% |
| ! | TGAGTGAGTTGAAGTACGAG+CGG | + | tig0020422:84270-84289 | Msa1381120:five_prime_UTR | 45.0% |
| TCAATGGAGTCCCTTAATGG+AGG | + | tig0020422:84307-84326 | Msa1381120:exon | 45.0% | |
| TGACGTCACTCCTCCATTAA+GGG | - | tig0020422:84320-84339 | None:intergenic | 45.0% | |
| ATGACGTCACTCCTCCATTA+AGG | - | tig0020422:84321-84340 | None:intergenic | 45.0% | |
| CAGCGTCGTCGTATACTTAT+TGG | + | tig0020422:84371-84390 | Msa1381120:CDS | 45.0% | |
| ! | TGCTGTAGCTTTTGTGGAAC+AGG | - | tig0020422:84430-84449 | None:intergenic | 45.0% |
| CTCATCAATTGGGTTCTGCT+TGG | + | tig0020422:84473-84492 | Msa1381120:CDS | 45.0% | |
| !! | TAATTGACTCGGTGTGGTGT+AGG | - | tig0020422:84585-84604 | None:intergenic | 45.0% |
| GGTTCCATATCATTCTCCTC+TGG | + | tig0020422:84667-84686 | Msa1381120:CDS | 45.0% | |
| TCTGCCAGAGGAGAATGATA+TGG | - | tig0020422:84674-84693 | None:intergenic | 45.0% | |
| ATATCATTCTCCTCTGGCAG+AGG | + | tig0020422:84673-84692 | Msa1381120:CDS | 45.0% | |
| AAGTGCCAACACGAAGAGTA+AGG | - | tig0020422:85052-85071 | None:intergenic | 45.0% | |
| GATGTTCCGGAGATCTCATT+TGG | + | tig0020422:85193-85212 | Msa1381120:CDS | 45.0% | |
| ! | GGAGATCTCATTTGGTGAAC+TGG | + | tig0020422:85201-85220 | Msa1381120:CDS | 45.0% |
| TACGACACTATGCTAGTAGG+AGG | + | tig0020422:85377-85396 | Msa1381120:intron | 45.0% | |
| GACCAAATAGACGACAAACC+TGG | + | tig0020422:85526-85545 | Msa1381120:intron | 45.0% | |
| TGCCAGGTTTGTCGTCTATT+TGG | - | tig0020422:85531-85550 | None:intergenic | 45.0% | |
| ATAGACGACAAACCTGGCAA+AGG | + | tig0020422:85532-85551 | Msa1381120:intron | 45.0% | |
| TAGACGACAAACCTGGCAAA+GGG | + | tig0020422:85533-85552 | Msa1381120:intron | 45.0% | |
| TTTCTTGATCTCCCTTTGCC+AGG | - | tig0020422:85547-85566 | None:intergenic | 45.0% | |
| CTTCTCGGTGATTTGACCTA+AGG | - | tig0020422:85572-85591 | None:intergenic | 45.0% | |
| CTTAGGTCAAATCACCGAGA+AGG | + | tig0020422:85570-85589 | Msa1381120:intron | 45.0% | |
| !! | TTGAGAATAGGGTGCTGAGA+AGG | + | tig0020422:85722-85741 | Msa1381120:intron | 45.0% |
| TGTAGGCCACAAGACTTTAG+TGG | - | tig0020422:86127-86146 | None:intergenic | 45.0% | |
| ! | CCCTAATTATAGGGCCCTTT+TGG | - | tig0020422:86609-86628 | None:intergenic | 45.0% |
| AAGGGCCCTATAATTAGGGA+CGG | + | tig0020422:86610-86629 | Msa1381120:intron | 45.0% | |
| CTACCTCCGTCCCTAATTAT+AGG | - | tig0020422:86619-86638 | None:intergenic | 45.0% | |
| !! | GGGTCAACTGGAGTCATTTT+AGG | - | tig0020422:86757-86776 | None:intergenic | 45.0% |
| !!! | TGCTGGTGGATTAAGGGTTT+TGG | - | tig0020422:86800-86819 | None:intergenic | 45.0% |
| !! | GGGTTGATGTAGGACAATGA+AGG | - | tig0020422:86870-86889 | None:intergenic | 45.0% |
| ! | TGAAGCAACTTTTCCCGAAC+AGG | - | tig0020422:87185-87204 | None:intergenic | 45.0% |
| !! | TTATTATATGTATTTATTAT+AGG | + | tig0020422:84945-84964 | Msa1381120:intron | 5.0% |
| !!! | AATTAATTTTTTCTTTTAAA+TGG | + | tig0020422:85835-85854 | Msa1381120:intron | 5.0% |
| !! | AAAAGATATAAAATAAATAA+GGG | - | tig0020422:86453-86472 | None:intergenic | 5.0% |
| !! | AAAAAGATATAAAATAAATA+AGG | - | tig0020422:86454-86473 | None:intergenic | 5.0% |
| GTCATCGTCGTCGAAATCGA+AGG | + | tig0020422:84336-84355 | Msa1381120:CDS | 50.0% | |
| ! | TTGGAATCGTGCTGGCACTT+GGG | + | tig0020422:84492-84511 | Msa1381120:CDS | 50.0% |
| ! | TGGTGAACTGGATGACTTGC+AGG | + | tig0020422:85213-85232 | Msa1381120:CDS | 50.0% |
| !! | GAATAGGGTGCTGAGAAGGA+TGG | + | tig0020422:85726-85745 | Msa1381120:intron | 50.0% |
| GGTTCTGCTTGGAATCGTGC+TGG | + | tig0020422:84484-84503 | Msa1381120:CDS | 55.0% | |
| ! | CTTGGAATCGTGCTGGCACT+TGG | + | tig0020422:84491-84510 | Msa1381120:CDS | 55.0% |
| ! | TGGGGGGCATATCGATGTTC+CGG | + | tig0020422:85180-85199 | Msa1381120:CDS | 55.0% |
| GGCCCTATAATTAGGGACGG+AGG | + | tig0020422:86613-86632 | Msa1381120:intron | 55.0% | |
| TTGTGCTGTGCCTCTGCCAG+AGG | - | tig0020422:84686-84705 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020422 | gene | 84222 | 87304 | 84222 | ID=Msa1381120;Name=Msa1381120 |
| tig0020422 | mRNA | 84222 | 87304 | 84222 | ID=Msa1381120-mRNA-1;Parent=Msa1381120;Name=Msa1381120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=88|1|1|1|1|1|5|72|208 |
| tig0020422 | exon | 84222 | 84555 | 84222 | ID=Msa1381120-mRNA-1:exon:7375;Parent=Msa1381120-mRNA-1 |
| tig0020422 | exon | 84649 | 84735 | 84649 | ID=Msa1381120-mRNA-1:exon:7376;Parent=Msa1381120-mRNA-1 |
| tig0020422 | exon | 84967 | 85036 | 84967 | ID=Msa1381120-mRNA-1:exon:7377;Parent=Msa1381120-mRNA-1 |
| tig0020422 | exon | 85146 | 85234 | 85146 | ID=Msa1381120-mRNA-1:exon:7378;Parent=Msa1381120-mRNA-1 |
| tig0020422 | exon | 87098 | 87304 | 87098 | ID=Msa1381120-mRNA-1:exon:7379;Parent=Msa1381120-mRNA-1 |
| tig0020422 | five_prime_UTR | 84222 | 84309 | 84222 | ID=Msa1381120-mRNA-1:five_prime_utr;Parent=Msa1381120-mRNA-1 |
| tig0020422 | CDS | 84310 | 84555 | 84310 | ID=Msa1381120-mRNA-1:cds;Parent=Msa1381120-mRNA-1 |
| tig0020422 | CDS | 84649 | 84735 | 84649 | ID=Msa1381120-mRNA-1:cds;Parent=Msa1381120-mRNA-1 |
| tig0020422 | CDS | 84967 | 85036 | 84967 | ID=Msa1381120-mRNA-1:cds;Parent=Msa1381120-mRNA-1 |
| tig0020422 | CDS | 85146 | 85234 | 85146 | ID=Msa1381120-mRNA-1:cds;Parent=Msa1381120-mRNA-1 |
| tig0020422 | CDS | 87098 | 87232 | 87098 | ID=Msa1381120-mRNA-1:cds;Parent=Msa1381120-mRNA-1 |
| tig0020422 | three_prime_UTR | 87233 | 87304 | 87233 | ID=Msa1381120-mRNA-1:three_prime_utr;Parent=Msa1381120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
