Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562220 | XP_039685236.1 | 95.405 | 370 | 10 | 1 | 1 | 370 | 1 | 363 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562220 | sp|F4IP06|SWC2_ARATH | 59.091 | 352 | 128 | 4 | 14 | 358 | 9 | 351 | 1.99e-126 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562220 | A0A396GMM6 | 95.405 | 370 | 10 | 1 | 1 | 370 | 1 | 363 | 0.0 | 715 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0562220 | 0.824220 | 9.083877e-54 | -8.615850e-47 |
| Msa0047070 | Msa0562220 | 0.817249 | 3.637597e-52 | -8.615850e-47 |
| Msa0078650 | Msa0562220 | 0.837919 | 3.911364e-57 | -8.615850e-47 |
| Msa0110970 | Msa0562220 | 0.824967 | 6.058733e-54 | -8.615850e-47 |
| Msa0124340 | Msa0562220 | 0.801029 | 1.091637e-48 | -8.615850e-47 |
| Msa0126370 | Msa0562220 | 0.827336 | 1.655053e-54 | -8.615850e-47 |
| Msa0144360 | Msa0562220 | 0.801442 | 8.988780e-49 | -8.615850e-47 |
| Msa0146260 | Msa0562220 | 0.812074 | 5.090727e-51 | -8.615850e-47 |
| Msa0152400 | Msa0562220 | 0.800277 | 1.554515e-48 | -8.615850e-47 |
| Msa0157290 | Msa0562220 | 0.823617 | 1.257964e-53 | -8.615850e-47 |
| Msa0171290 | Msa0562220 | 0.827245 | 1.739957e-54 | -8.615850e-47 |
| Msa0195630 | Msa0562220 | 0.800118 | 1.674769e-48 | -8.615850e-47 |
| Msa0225460 | Msa0562220 | 0.804468 | 2.129229e-49 | -8.615850e-47 |
| Msa0225680 | Msa0562220 | 0.814302 | 1.651133e-51 | -8.615850e-47 |
| Msa0369850 | Msa0562220 | 0.834878 | 2.323645e-56 | -8.615850e-47 |
| Msa0376350 | Msa0562220 | 0.807260 | 5.512734e-50 | -8.615850e-47 |
| Msa0410500 | Msa0562220 | 0.838364 | 3.005211e-57 | -8.615850e-47 |
| Msa0413450 | Msa0562220 | 0.801922 | 7.165364e-49 | -8.615850e-47 |
| Msa0417270 | Msa0562220 | 0.833443 | 5.317338e-56 | -8.615850e-47 |
| Msa0417880 | Msa0562220 | 0.858782 | 6.502935e-63 | -8.615850e-47 |
| Msa0423900 | Msa0562220 | 0.808317 | 3.286360e-50 | -8.615850e-47 |
| Msa0428590 | Msa0562220 | 0.812428 | 4.260737e-51 | -8.615850e-47 |
| Msa0467430 | Msa0562220 | 0.802548 | 5.325944e-49 | -8.615850e-47 |
| Msa0468290 | Msa0562220 | 0.801054 | 1.079167e-48 | -8.615850e-47 |
| Msa0469160 | Msa0562220 | 0.803135 | 4.027442e-49 | -8.615850e-47 |
| Msa0475790 | Msa0562220 | 0.838711 | 2.444544e-57 | -8.615850e-47 |
| Msa0243100 | Msa0562220 | 0.808276 | 3.353518e-50 | -8.615850e-47 |
| Msa0248970 | Msa0562220 | 0.811967 | 5.370452e-51 | -8.615850e-47 |
| Msa0287650 | Msa0562220 | 0.807127 | 5.884186e-50 | -8.615850e-47 |
| Msa0296110 | Msa0562220 | 0.808465 | 3.055769e-50 | -8.615850e-47 |
| Msa0336030 | Msa0562220 | 0.804442 | 2.156294e-49 | -8.615850e-47 |
| Msa0488560 | Msa0562220 | 0.820956 | 5.215589e-53 | -8.615850e-47 |
| Msa0503060 | Msa0562220 | 0.800245 | 1.577621e-48 | -8.615850e-47 |
| Msa0505770 | Msa0562220 | 0.801998 | 6.910628e-49 | -8.615850e-47 |
| Msa0507680 | Msa0562220 | 0.800167 | 1.636398e-48 | -8.615850e-47 |
| Msa0509610 | Msa0562220 | 0.807705 | 4.436492e-50 | -8.615850e-47 |
| Msa0546680 | Msa0562220 | 0.818413 | 1.985841e-52 | -8.615850e-47 |
| Msa0562220 | Msa0569200 | 0.805678 | 1.188879e-49 | -8.615850e-47 |
| Msa0562220 | Msa0616160 | 0.820607 | 6.273799e-53 | -8.615850e-47 |
| Msa0562220 | Msa0642720 | 0.800095 | 1.692119e-48 | -8.615850e-47 |
| Msa0562220 | Msa0655560 | 0.922974 | 4.886701e-89 | -8.615850e-47 |
| Msa0562220 | Msa0657750 | 0.818789 | 1.631496e-52 | -8.615850e-47 |
| Msa0562220 | Msa0682330 | 0.803831 | 2.889465e-49 | -8.615850e-47 |
| Msa0562220 | Msa0699360 | 0.800064 | 1.717469e-48 | -8.615850e-47 |
| Msa0562220 | Msa0704600 | 0.817560 | 3.095180e-52 | -8.615850e-47 |
| Msa0562220 | Msa0828920 | 0.800603 | 1.333963e-48 | -8.615850e-47 |
| Msa0562220 | Msa0846140 | 0.821871 | 3.206013e-53 | -8.615850e-47 |
| Msa0562220 | Msa0856050 | 0.805141 | 1.540299e-49 | -8.615850e-47 |
| Msa0562220 | Msa0878290 | 0.801643 | 8.172202e-49 | -8.615850e-47 |
| Msa0562220 | Msa0880140 | 0.822270 | 2.591331e-53 | -8.615850e-47 |
| Msa0562220 | Msa0909230 | 0.804652 | 1.948779e-49 | -8.615850e-47 |
| Msa0562220 | Msa0966400 | 0.815506 | 8.927135e-52 | -8.615850e-47 |
| Msa0562220 | Msa1004600 | 0.803754 | 2.997512e-49 | -8.615850e-47 |
| Msa0562220 | Msa1029250 | 0.816106 | 6.562247e-52 | -8.615850e-47 |
| Msa0562220 | Msa1041670 | 0.801428 | 9.047718e-49 | -8.615850e-47 |
| Msa0562220 | Msa1059960 | 0.806487 | 8.032561e-50 | -8.615850e-47 |
| Msa0562220 | Msa1063950 | 0.830206 | 3.345612e-55 | -8.615850e-47 |
| Msa0562220 | Msa1108160 | 0.805792 | 1.125133e-49 | -8.615850e-47 |
| Msa0562220 | Msa1111130 | 0.812484 | 4.143126e-51 | -8.615850e-47 |
| Msa0562220 | Msa1139810 | 0.805491 | 1.301340e-49 | -8.615850e-47 |
| Msa0562220 | Msa1151910 | 0.839839 | 1.246528e-57 | -8.615850e-47 |
| Msa0562220 | Msa1165740 | 0.808694 | 2.731431e-50 | -8.615850e-47 |
| Msa0562220 | Msa1166560 | 0.802652 | 5.068339e-49 | -8.615850e-47 |
| Msa0562220 | Msa1179940 | 0.809939 | 1.476539e-50 | -8.615850e-47 |
| Msa0562220 | Msa1179970 | 0.805125 | 1.552035e-49 | -8.615850e-47 |
| Msa0562220 | Msa1199570 | 0.813058 | 3.102405e-51 | -8.615850e-47 |
| Msa0562220 | Msa1209460 | 0.815034 | 1.136708e-51 | -8.615850e-47 |
| Msa0562220 | Msa1252190 | 0.810252 | 1.264444e-50 | -8.615850e-47 |
| Msa0562220 | Msa1272900 | 0.807017 | 6.206714e-50 | -8.615850e-47 |
| Msa0562220 | Msa1292830 | 0.801928 | 7.144257e-49 | -8.615850e-47 |
| Msa0562220 | Msa1328710 | 0.809580 | 1.763721e-50 | -8.615850e-47 |
| Msa0562220 | Msa1346370 | 0.804242 | 2.373270e-49 | -8.615850e-47 |
| Msa0562220 | Msa1366600 | 0.820195 | 7.799782e-53 | -8.615850e-47 |
| Msa0562220 | Msa1374040 | 0.807142 | 5.840418e-50 | -8.615850e-47 |
| Msa0562220 | Msa1384650 | 0.800215 | 1.600122e-48 | -8.615850e-47 |
| Msa0562220 | Msa1422580 | 0.805162 | 1.524956e-49 | -8.615850e-47 |
| Msa0562220 | Msa1460020 | 0.808078 | 3.696187e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562220 | MtrunA17_Chr8g0375271 | 95.405 | 370 | 10 | 1 | 1 | 370 | 1 | 363 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562220 | AT2G36740.1 | 59.091 | 352 | 128 | 4 | 14 | 358 | 9 | 351 | 2.03e-127 | 370 |
| Msa0562220 | AT2G36740.2 | 62.706 | 303 | 104 | 3 | 10 | 305 | 5 | 305 | 5.56e-117 | 342 |
Find 87 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATCATTATCATCAATTT+TGG | 0.077559 | 4_1:+61856327 | None:intergenic |
| GAAGAAAATCTTATCTAATT+TGG | 0.115613 | 4_1:-61856359 | Msa0562220:CDS |
| GGCTTATATGATTCAGTTTC+TGG | 0.127458 | 4_1:-61852638 | Msa0562220:CDS |
| AATTATGAACTTGAGGAATT+TGG | 0.176156 | 4_1:-61855353 | Msa0562220:CDS |
| TCGCCTTTCTTCCTTATTAC+TGG | 0.196750 | 4_1:+61855536 | None:intergenic |
| TATGATTCAGTTTCTGGATA+TGG | 0.207235 | 4_1:-61852632 | Msa0562220:CDS |
| GTGCATAAAACTGTCTTTAA+TGG | 0.216607 | 4_1:-61855286 | Msa0562220:CDS |
| CCGCGATTTCAGCTTCTTCT+TGG | 0.241131 | 4_1:+61856610 | None:intergenic |
| CAATGGCTTCTTTCATGATT+TGG | 0.245034 | 4_1:+61852404 | None:intergenic |
| TTCAACAAGATGAATTGTTC+TGG | 0.284399 | 4_1:-61856674 | Msa0562220:CDS |
| CAACCTGTTTGCGTTATTAC+TGG | 0.293930 | 4_1:-61853776 | Msa0562220:CDS |
| CTCTAGAAAAGAAACGAATA+TGG | 0.304931 | 4_1:-61852663 | Msa0562220:CDS |
| TTAACTTCAAATCTTTCTTA+AGG | 0.305053 | 4_1:-61852229 | Msa0562220:three_prime_UTR |
| GGCTGTTCTTCATCGGGTTC+AGG | 0.307025 | 4_1:+61856463 | None:intergenic |
| TAACTTCAAATCTTTCTTAA+GGG | 0.318251 | 4_1:-61852228 | Msa0562220:three_prime_UTR |
| GAGGCCTGTTTCAGTAATCT+TGG | 0.349648 | 4_1:-61852324 | Msa0562220:three_prime_UTR |
| GCGAACAATGACGGAAGTTC+TGG | 0.369171 | 4_1:+61856231 | None:intergenic |
| GTTGGGATTAAAATAGAAAC+AGG | 0.376767 | 4_1:-61852353 | Msa0562220:three_prime_UTR |
| AGGCCTGTTTCAGTAATCTT+GGG | 0.383670 | 4_1:-61852323 | Msa0562220:three_prime_UTR |
| ACAATGGAGGAAAAGAATTC+AGG | 0.384881 | 4_1:-61856786 | Msa0562220:CDS |
| ATAACGCAAACAGGTTGTTC+TGG | 0.392827 | 4_1:+61853782 | None:intergenic |
| CGTATTTGGAGTTTACTAAA+GGG | 0.400482 | 4_1:-61855144 | Msa0562220:CDS |
| GCGTATGGCAGCCCAGTCTT+TGG | 0.402777 | 4_1:+61853574 | None:intergenic |
| GATATTGGAGATAACCTTGT+AGG | 0.403997 | 4_1:+61856168 | None:intergenic |
| ATGCGAAGGAGGTAATGATT+AGG | 0.411108 | 4_1:-61856261 | Msa0562220:CDS |
| AGATGAATTGTTCTGGGGTC+AGG | 0.416421 | 4_1:-61856667 | Msa0562220:CDS |
| ATACACTACATATCACAAAA+TGG | 0.416807 | 4_1:-61855256 | Msa0562220:intron |
| AAGAAGCGATTGATATATCC+TGG | 0.422336 | 4_1:-61856412 | Msa0562220:CDS |
| CACGATTCAAACCTCAGGTT+GGG | 0.438979 | 4_1:-61852370 | Msa0562220:three_prime_UTR |
| AGTTACGTCTTGGTCGAAAT+CGG | 0.439480 | 4_1:+61856575 | None:intergenic |
| AGACCCAAGATTACTGAAAC+AGG | 0.443789 | 4_1:+61852320 | None:intergenic |
| TCAACAAGATGAATTGTTCT+GGG | 0.454323 | 4_1:-61856673 | Msa0562220:CDS |
| ATCTTGTCTCGGGTATTGTA+TGG | 0.456155 | 4_1:+61852101 | None:intergenic |
| TAGAGAATAGTTTGATAATG+AGG | 0.464509 | 4_1:+61852171 | None:intergenic |
| TTAGCCAATGTCGTCTTCCC+AGG | 0.468618 | 4_1:+61856394 | None:intergenic |
| AAATAGAAACAGGGTATTTG+AGG | 0.471877 | 4_1:-61852343 | Msa0562220:three_prime_UTR |
| TCGTATTTGGAGTTTACTAA+AGG | 0.472369 | 4_1:-61855145 | Msa0562220:CDS |
| CCTCCTTCGCATCATCGTCC+TGG | 0.473697 | 4_1:+61856272 | None:intergenic |
| CACATGATCGGTCCTTGGCT+CGG | 0.478772 | 4_1:-61852559 | Msa0562220:CDS |
| GAATGGCTTCTCTTTCAGCT+TGG | 0.491571 | 4_1:+61856209 | None:intergenic |
| GAGATCGAATCTTCTACTGC+TGG | 0.496740 | 4_1:-61856754 | Msa0562220:CDS |
| AAACCAGTAATAACGCAAAC+AGG | 0.498211 | 4_1:+61853773 | None:intergenic |
| AAGAAAGGCTCTTACTTGGC+AGG | 0.501328 | 4_1:+61853749 | None:intergenic |
| CAGTAATCTTGGGTCTTCTG+TGG | 0.507755 | 4_1:-61852313 | Msa0562220:three_prime_UTR |
| AGTTTGATAATGAGGAAATG+AGG | 0.513822 | 4_1:+61852179 | None:intergenic |
| ATATATTAGAATCTTGTCTC+GGG | 0.515538 | 4_1:+61852091 | None:intergenic |
| TTCATCACGATTCAAACCTC+AGG | 0.516830 | 4_1:-61852375 | Msa0562220:three_prime_UTR |
| TGGGCCCCAAGAGAAGGTTC+GGG | 0.516834 | 4_1:-61856858 | None:intergenic |
| TTCAGCTTGGCGAACAATGA+CGG | 0.524822 | 4_1:+61856222 | None:intergenic |
| ACATCCACATGATCGGTCCT+TGG | 0.525200 | 4_1:-61852564 | Msa0562220:CDS |
| AGGTACCGTGATCCAAAGAC+TGG | 0.525622 | 4_1:-61853586 | Msa0562220:CDS |
| GAATCTTCATCCTCAAAAGT+AGG | 0.528439 | 4_1:+61852524 | None:intergenic |
| CTGCAGAAATTATGAACTTG+AGG | 0.529753 | 4_1:-61855360 | Msa0562220:intron |
| GTTTGATAATGAGGAAATGA+GGG | 0.533328 | 4_1:+61852180 | None:intergenic |
| TGCTTTGAGAGCTTCGCGAA+TGG | 0.533499 | 4_1:+61856192 | None:intergenic |
| AATATATTAGAATCTTGTCT+CGG | 0.537809 | 4_1:+61852090 | None:intergenic |
| TCTAGAAAAGAAACGAATAT+GGG | 0.542033 | 4_1:-61852662 | Msa0562220:CDS |
| TCACGATTCAAACCTCAGGT+TGG | 0.550303 | 4_1:-61852371 | Msa0562220:three_prime_UTR |
| AAAATATACATCCACATGAT+CGG | 0.556585 | 4_1:-61852571 | Msa0562220:CDS |
| AAAATTGATGATAATGATGA+CGG | 0.559093 | 4_1:-61856325 | Msa0562220:CDS |
| AAGTTTACTTGCAATCAAGA+AGG | 0.566909 | 4_1:+61853512 | None:intergenic |
| CAGCCAGTAATAAGGAAGAA+AGG | 0.573774 | 4_1:-61855539 | Msa0562220:CDS |
| AGCTCTCAAAGCAACCTACA+AGG | 0.574053 | 4_1:-61856182 | Msa0562220:intron |
| CGTGCATCTCGAGCGACAAG+AGG | 0.584790 | 4_1:-61856729 | Msa0562220:CDS |
| GTATTTGGAGTTTACTAAAG+GGG | 0.598121 | 4_1:-61855143 | Msa0562220:CDS |
| CGCACATTCTTGAGACGTTG+TGG | 0.601571 | 4_1:+61855099 | None:intergenic |
| CGAGCCAAGGACCGATCATG+TGG | 0.604117 | 4_1:+61852560 | None:intergenic |
| AAGTGTTAACACTGAACAGA+AGG | 0.605319 | 4_1:-61856832 | Msa0562220:five_prime_UTR |
| GGAGAAGAAAATGTCACAAG+AGG | 0.609231 | 4_1:-61855513 | Msa0562220:CDS |
| TGTGATATGTAGTGTATCTG+TGG | 0.609479 | 4_1:+61855262 | None:intergenic |
| GCAGCCCAGTCTTTGGATCA+CGG | 0.611548 | 4_1:+61853581 | None:intergenic |
| AGAAGCGATTGATATATCCT+GGG | 0.612387 | 4_1:-61856411 | Msa0562220:CDS |
| CAACCAGGACGATGATGCGA+AGG | 0.612565 | 4_1:-61856275 | Msa0562220:CDS |
| AAACAACAAGAACAACAACC+AGG | 0.612812 | 4_1:-61856290 | Msa0562220:CDS |
| ATATCCTGGGAAGACGACAT+TGG | 0.615449 | 4_1:-61856398 | Msa0562220:CDS |
| CCAGGACGATGATGCGAAGG+AGG | 0.615528 | 4_1:-61856272 | Msa0562220:CDS |
| ATCGTGATGAAGCACAGCAA+TGG | 0.617402 | 4_1:+61852387 | None:intergenic |
| AAGATTCTGACTAACTGCCT+TGG | 0.625749 | 4_1:-61852508 | Msa0562220:intron |
| AGAAAAGAAACGAATATGGG+AGG | 0.647868 | 4_1:-61852659 | Msa0562220:CDS |
| CGAGCGAGTTAGTACAATGG+AGG | 0.651028 | 4_1:-61856799 | Msa0562220:exon |
| GTGCGAGCGAGTTAGTACAA+TGG | 0.652562 | 4_1:-61856802 | Msa0562220:exon |
| AATTCTACGAAACCGAGCCA+AGG | 0.655235 | 4_1:+61852547 | None:intergenic |
| CAACAAGATGAATTGTTCTG+GGG | 0.658361 | 4_1:-61856672 | Msa0562220:CDS |
| CCAAGAAGAAGCTGAAATCG+CGG | 0.669602 | 4_1:-61856610 | Msa0562220:CDS |
| AGTAATAAGGAAGAAAGGCG+AGG | 0.677909 | 4_1:-61855534 | Msa0562220:CDS |
| GGTACCGTGATCCAAAGACT+GGG | 0.697285 | 4_1:-61853585 | Msa0562220:CDS |
| TTGGGATTAAAATAGAAACA+GGG | 0.733790 | 4_1:-61852352 | Msa0562220:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTTTTTTTTCTTTTTTT+TGG | - | chr4_1:61853361-61853380 | Msa0562220:intron | 10.0% |
| !!! | TTTAATCTATTGTTGTTATA+AGG | + | chr4_1:61853005-61853024 | None:intergenic | 15.0% |
| !!! | CTAACTAATTTTTGTAAATT+CGG | + | chr4_1:61854194-61854213 | None:intergenic | 15.0% |
| !! | TTCAATACAAAAAAAATTGA+CGG | - | chr4_1:61854790-61854809 | Msa0562220:intron | 15.0% |
| !!! | GTTTAATTAGTTTAAAGTTA+GGG | - | chr4_1:61854812-61854831 | Msa0562220:intron | 15.0% |
| !! | TACTGTTATAAAAGAATATT+AGG | + | chr4_1:61855463-61855482 | None:intergenic | 15.0% |
| !!! | ATCATAAAAAGTTATCTTTT+TGG | + | chr4_1:61855531-61855550 | None:intergenic | 15.0% |
| !! | TTATAAGAACAATTATAACT+AGG | + | chr4_1:61855976-61855995 | None:intergenic | 15.0% |
| !! | TATAAAAGAAGACTAAAAAT+AGG | + | chr4_1:61856458-61856477 | None:intergenic | 15.0% |
| !! | GAAGAAAATCTTATCTAATT+TGG | - | chr4_1:61852566-61852585 | Msa0562220:CDS | 20.0% |
| !!! | TCATCATTATCATCAATTTT+GGG | + | chr4_1:61852600-61852619 | None:intergenic | 20.0% |
| !!! | AAAATTGATGATAATGATGA+CGG | - | chr4_1:61852600-61852619 | Msa0562220:CDS | 20.0% |
| !! | TTATTTCAATAATCTTTCTG+GGG | + | chr4_1:61853076-61853095 | None:intergenic | 20.0% |
| !! | CTTATTTCAATAATCTTTCT+GGG | + | chr4_1:61853077-61853096 | None:intergenic | 20.0% |
| !! | AACTTAAATGCTTATCATAT+AGG | + | chr4_1:61853282-61853301 | None:intergenic | 20.0% |
| !! | AATATAGTGCTAGAATAAAA+GGG | + | chr4_1:61853853-61853872 | None:intergenic | 20.0% |
| !! | AAATATAGTGCTAGAATAAA+AGG | + | chr4_1:61853854-61853873 | None:intergenic | 20.0% |
| !!! | TTTATTCTAGCACTATATTT+TGG | - | chr4_1:61853854-61853873 | Msa0562220:intron | 20.0% |
| !!! | ATTAGTTTATAGACAATAAC+TGG | - | chr4_1:61854009-61854028 | Msa0562220:intron | 20.0% |
| !!! | ATTTTTGTAAATTCGGTATT+TGG | + | chr4_1:61854187-61854206 | None:intergenic | 20.0% |
| !! | CGAATTTACAAAAATTAGTT+AGG | - | chr4_1:61854192-61854211 | Msa0562220:intron | 20.0% |
| !! | TACAAAAATTAGTTAGGTTT+AGG | - | chr4_1:61854198-61854217 | Msa0562220:intron | 20.0% |
| !!! | ACTAAGTGTTTTAGATAATT+AGG | - | chr4_1:61854482-61854501 | Msa0562220:intron | 20.0% |
| !!! | CTAAGTGTTTTAGATAATTA+GGG | - | chr4_1:61854483-61854502 | Msa0562220:intron | 20.0% |
| !!! | GTAAAACTTTTTCTACTTAA+AGG | + | chr4_1:61854602-61854621 | None:intergenic | 20.0% |
| !! | AATTCGTTAGAGAAAAAAAT+TGG | - | chr4_1:61854761-61854780 | Msa0562220:intron | 20.0% |
| !!! | GGTTTAATTAGTTTAAAGTT+AGG | - | chr4_1:61854811-61854830 | Msa0562220:intron | 20.0% |
| !! | AAAAAAAAAAATAGTTCAGC+CGG | - | chr4_1:61855253-61855272 | Msa0562220:intron | 20.0% |
| !!! | CTTTTAAAATAATTCGACAA+CGG | - | chr4_1:61855385-61855404 | Msa0562220:intron | 20.0% |
| !! | TAATTCAATAACATCATAGT+GGG | + | chr4_1:61855643-61855662 | None:intergenic | 20.0% |
| !!! | TAAATATAAAAGCATTCATG+TGG | - | chr4_1:61856093-61856112 | Msa0562220:intron | 20.0% |
| !!! | AAATATAAAAGCATTCATGT+GGG | - | chr4_1:61856094-61856113 | Msa0562220:intron | 20.0% |
| !!! | TGCTTGTAATTGATTTTAAT+TGG | - | chr4_1:61856204-61856223 | Msa0562220:CDS | 20.0% |
| !!! | GCTTGTAATTGATTTTAATT+GGG | - | chr4_1:61856205-61856224 | Msa0562220:CDS | 20.0% |
| !!! | CTTGTAATTGATTTTAATTG+GGG | - | chr4_1:61856206-61856225 | Msa0562220:CDS | 20.0% |
| !!! | TTTTTATCAAAAAATGAGCA+GGG | + | chr4_1:61856659-61856678 | None:intergenic | 20.0% |
| !! | TTAACTTCAAATCTTTCTTA+AGG | - | chr4_1:61856696-61856715 | Msa0562220:CDS | 20.0% |
| !! | TAACTTCAAATCTTTCTTAA+GGG | - | chr4_1:61856697-61856716 | Msa0562220:CDS | 20.0% |
| !! | AATATATTAGAATCTTGTCT+CGG | + | chr4_1:61856838-61856857 | None:intergenic | 20.0% |
| !! | TAATTCTTCTTGATTTTCTC+AGG | - | chr4_1:61852437-61852456 | Msa0562220:intron | 25.0% |
| !! | GTCATCATTATCATCAATTT+TGG | + | chr4_1:61852601-61852620 | None:intergenic | 25.0% |
| ! | TGAATCACAGAAAAAGATAT+TGG | + | chr4_1:61852775-61852794 | None:intergenic | 25.0% |
| !! | ATCTTTTTCTGTGATTCATT+AGG | - | chr4_1:61852777-61852796 | Msa0562220:intron | 25.0% |
| !! | TCTTTTTCTGTGATTCATTA+GGG | - | chr4_1:61852778-61852797 | Msa0562220:intron | 25.0% |
| ! | GCTTATTTCAATAATCTTTC+TGG | + | chr4_1:61853078-61853097 | None:intergenic | 25.0% |
| ! | AATAAGCTTATAACAGCTTA+TGG | - | chr4_1:61853091-61853110 | Msa0562220:intron | 25.0% |
| ! | TACATAGATTCTGTTAAGAT+TGG | + | chr4_1:61853181-61853200 | None:intergenic | 25.0% |
| ! | CTTAACAGAATCTATGTAAA+TGG | - | chr4_1:61853183-61853202 | Msa0562220:intron | 25.0% |
| ! | AAGCATAATTGAAACATCAA+AGG | + | chr4_1:61853539-61853558 | None:intergenic | 25.0% |
| !! | TGATGTTTCAATTATGCTTT+TGG | - | chr4_1:61853540-61853559 | Msa0562220:CDS | 25.0% |
| ! | AATTATGAACTTGAGGAATT+TGG | - | chr4_1:61853572-61853591 | Msa0562220:CDS | 25.0% |
| ! | ATACACTACATATCACAAAA+TGG | - | chr4_1:61853669-61853688 | Msa0562220:intron | 25.0% |
| ! | ACAGATTGCTATATGTAAAA+TGG | + | chr4_1:61853743-61853762 | None:intergenic | 25.0% |
| !!! | AGCAATCTGTTTATTTTTTC+AGG | - | chr4_1:61853753-61853772 | Msa0562220:intron | 25.0% |
| ! | ATGTAATATATTCCGTTTCT+TGG | - | chr4_1:61853896-61853915 | Msa0562220:intron | 25.0% |
| ! | AATGACGAAACAATTTCTTT+GGG | + | chr4_1:61853953-61853972 | None:intergenic | 25.0% |
| ! | AAATTAGTTAGGTTTAGGAA+AGG | - | chr4_1:61854203-61854222 | Msa0562220:intron | 25.0% |
| ! | ATGTATAGTAAACAATGAGT+AGG | - | chr4_1:61854245-61854264 | Msa0562220:intron | 25.0% |
| !! | TATCTAAAACACTTAGTTGT+GGG | + | chr4_1:61854479-61854498 | None:intergenic | 25.0% |
| !! | TTATCTAAAACACTTAGTTG+TGG | + | chr4_1:61854480-61854499 | None:intergenic | 25.0% |
| ! | TAAGATTTGCAACTATGTAT+GGG | - | chr4_1:61854632-61854651 | Msa0562220:intron | 25.0% |
| !! | TAACAATATTTGAGGTACAA+TGG | + | chr4_1:61855300-61855319 | None:intergenic | 25.0% |
| ! | TTGTACCTCAAATATTGTTA+AGG | - | chr4_1:61855300-61855319 | Msa0562220:CDS | 25.0% |
| ! | AATTCAATAACATCATAGTG+GGG | + | chr4_1:61855642-61855661 | None:intergenic | 25.0% |
| ! | GTAATTCAATAACATCATAG+TGG | + | chr4_1:61855644-61855663 | None:intergenic | 25.0% |
| ! | AGGATTAAACACAATTTCAT+GGG | + | chr4_1:61855956-61855975 | None:intergenic | 25.0% |
| ! | TAGGATTAAACACAATTTCA+TGG | + | chr4_1:61855957-61855976 | None:intergenic | 25.0% |
| ! | TCTAGAAAAGAAACGAATAT+GGG | - | chr4_1:61856263-61856282 | Msa0562220:CDS | 25.0% |
| ! | AAAATATACATCCACATGAT+CGG | - | chr4_1:61856354-61856373 | Msa0562220:CDS | 25.0% |
| ! | AAAAGAAGACTAAAAATAGG+AGG | + | chr4_1:61856455-61856474 | None:intergenic | 25.0% |
| ! | TTGGGATTAAAATAGAAACA+GGG | - | chr4_1:61856573-61856592 | Msa0562220:intron | 25.0% |
| !! | CTTTTTATCAAAAAATGAGC+AGG | + | chr4_1:61856660-61856679 | None:intergenic | 25.0% |
| !! | GTTTGACTAATAGTTTTCTT+TGG | - | chr4_1:61856719-61856738 | Msa0562220:CDS | 25.0% |
| !!! | TAGAGAATAGTTTGATAATG+AGG | + | chr4_1:61856757-61856776 | None:intergenic | 25.0% |
| ! | ATATATTAGAATCTTGTCTC+GGG | + | chr4_1:61856837-61856856 | None:intergenic | 25.0% |
| TTCAACAAGATGAATTGTTC+TGG | - | chr4_1:61852251-61852270 | Msa0562220:three_prime_UTR | 30.0% | |
| TCAACAAGATGAATTGTTCT+GGG | - | chr4_1:61852252-61852271 | Msa0562220:three_prime_UTR | 30.0% | |
| ! | ATTCTTTCATCATCGTTTTG+TGG | + | chr4_1:61852486-61852505 | None:intergenic | 30.0% |
| ! | TCATTATCATCAATTTTGGG+AGG | + | chr4_1:61852597-61852616 | None:intergenic | 30.0% |
| CTATCTTGAAAAACAGCTTA+TGG | + | chr4_1:61852946-61852965 | None:intergenic | 30.0% | |
| ! | AACATTTTCAGACCATAATC+AGG | + | chr4_1:61853347-61853366 | None:intergenic | 30.0% |
| GGTCAATATTAGAATACACT+TGG | - | chr4_1:61853461-61853480 | Msa0562220:intron | 30.0% | |
| GAAAACTAAAACAAACAAGC+AGG | + | chr4_1:61853509-61853528 | None:intergenic | 30.0% | |
| GTGCATAAAACTGTCTTTAA+TGG | - | chr4_1:61853639-61853658 | Msa0562220:intron | 30.0% | |
| ACTACATATCACAAAATGGT+TGG | - | chr4_1:61853673-61853692 | Msa0562220:intron | 30.0% | |
| !! | TGCATTTAGTTTGGTTGTAT+TGG | - | chr4_1:61853711-61853730 | Msa0562220:intron | 30.0% |
| !!! | TTTTTCAGGTTGTTCGTATT+TGG | - | chr4_1:61853767-61853786 | Msa0562220:CDS | 30.0% |
| ! | TCGTATTTGGAGTTTACTAA+AGG | - | chr4_1:61853780-61853799 | Msa0562220:CDS | 30.0% |
| ! | CGTATTTGGAGTTTACTAAA+GGG | - | chr4_1:61853781-61853800 | Msa0562220:CDS | 30.0% |
| ! | GTATTTGGAGTTTACTAAAG+GGG | - | chr4_1:61853782-61853801 | Msa0562220:CDS | 30.0% |
| GAACTTTATGAACCAAGAAA+CGG | + | chr4_1:61853911-61853930 | None:intergenic | 30.0% | |
| CAATGACGAAACAATTTCTT+TGG | + | chr4_1:61853954-61853973 | None:intergenic | 30.0% | |
| CAAAGAAATTGTTTCGTCAT+TGG | - | chr4_1:61853952-61853971 | Msa0562220:intron | 30.0% | |
| TAGACAATAACTGGAATAAC+TGG | - | chr4_1:61854018-61854037 | Msa0562220:intron | 30.0% | |
| ! | TTCAGATGGTATCATTTTAC+TGG | - | chr4_1:61854078-61854097 | Msa0562220:intron | 30.0% |
| TGACATTATAACAAGTGCTA+AGG | - | chr4_1:61854111-61854130 | Msa0562220:intron | 30.0% | |
| ! | GCAGTTGAACATAAATGTTT+TGG | - | chr4_1:61854135-61854154 | Msa0562220:intron | 30.0% |
| !!! | ATAAATGTTTTGGAGACCAA+GGG | - | chr4_1:61854145-61854164 | Msa0562220:intron | 30.0% |
| ATAGTAAACAATGAGTAGGA+AGG | - | chr4_1:61854249-61854268 | Msa0562220:intron | 30.0% | |
| ACATAGTTGCAAATCTTACT+AGG | + | chr4_1:61854630-61854649 | None:intergenic | 30.0% | |
| GTAAGATTTGCAACTATGTA+TGG | - | chr4_1:61854631-61854650 | Msa0562220:intron | 30.0% | |
| !! | ATGTTGGTAACTCTTACAAA+TGG | - | chr4_1:61854918-61854937 | Msa0562220:intron | 30.0% |
| !! | TGTTGGTAACTCTTACAAAT+GGG | - | chr4_1:61854919-61854938 | Msa0562220:intron | 30.0% |
| ! | TGAGAAGAATTTAAAGTACC+CGG | - | chr4_1:61854985-61855004 | Msa0562220:intron | 30.0% |
| ! | TACATAGAATTTTCTGATGC+CGG | + | chr4_1:61855007-61855026 | None:intergenic | 30.0% |
| TCACATCAATACATCAAGAA+AGG | + | chr4_1:61855194-61855213 | None:intergenic | 30.0% | |
| TTATAATCCAACTGAACTAC+TGG | + | chr4_1:61855234-61855253 | None:intergenic | 30.0% | |
| GAACTCCTTAACAATATTTG+AGG | + | chr4_1:61855308-61855327 | None:intergenic | 30.0% | |
| AAGTTTACTTGCAATCAAGA+AGG | + | chr4_1:61855416-61855435 | None:intergenic | 30.0% | |
| GTTAATGTGATTCACTTCAT+AGG | - | chr4_1:61855484-61855503 | Msa0562220:intron | 30.0% | |
| !!! | TTTTTTTTTTCCTTCTGCAG+TGG | - | chr4_1:61855573-61855592 | Msa0562220:intron | 30.0% |
| TATTGTTGGATAGCTAATGA+TGG | - | chr4_1:61855838-61855857 | Msa0562220:intron | 30.0% | |
| ATTGTTGGATAGCTAATGAT+GGG | - | chr4_1:61855839-61855858 | Msa0562220:intron | 30.0% | |
| TCTGAAAAGCTAGAGAAATT+GGG | + | chr4_1:61855897-61855916 | None:intergenic | 30.0% | |
| TGGTTAATGATAGTAGGATT+AGG | - | chr4_1:61856120-61856139 | Msa0562220:intron | 30.0% | |
| ! | CTCTAGAAAAGAAACGAATA+TGG | - | chr4_1:61856262-61856281 | Msa0562220:CDS | 30.0% |
| ! | TATGATTCAGTTTCTGGATA+TGG | - | chr4_1:61856293-61856312 | Msa0562220:CDS | 30.0% |
| AATGCATCGTTATTACAAGA+GGG | + | chr4_1:61856486-61856505 | None:intergenic | 30.0% | |
| TAATGCATCGTTATTACAAG+AGG | + | chr4_1:61856487-61856506 | None:intergenic | 30.0% | |
| GTTGGGATTAAAATAGAAAC+AGG | - | chr4_1:61856572-61856591 | Msa0562220:intron | 30.0% | |
| ! | AAATAGAAACAGGGTATTTG+AGG | - | chr4_1:61856582-61856601 | Msa0562220:CDS | 30.0% |
| !! | GTTTGATAATGAGGAAATGA+GGG | + | chr4_1:61856748-61856767 | None:intergenic | 30.0% |
| !! | AGTTTGATAATGAGGAAATG+AGG | + | chr4_1:61856749-61856768 | None:intergenic | 30.0% |
| AAGTGTTAACACTGAACAGA+AGG | - | chr4_1:61852093-61852112 | Msa0562220:three_prime_UTR | 35.0% | |
| ACAATGGAGGAAAAGAATTC+AGG | - | chr4_1:61852139-61852158 | Msa0562220:three_prime_UTR | 35.0% | |
| CAACAAGATGAATTGTTCTG+GGG | - | chr4_1:61852253-61852272 | Msa0562220:three_prime_UTR | 35.0% | |
| ! | TAATCGGTGTGAATGAGTTT+TGG | + | chr4_1:61852382-61852401 | None:intergenic | 35.0% |
| AAGAAGCGATTGATATATCC+TGG | - | chr4_1:61852513-61852532 | Msa0562220:exon | 35.0% | |
| AGAAGCGATTGATATATCCT+GGG | - | chr4_1:61852514-61852533 | Msa0562220:exon | 35.0% | |
| AAACAACAAGAACAACAACC+AGG | - | chr4_1:61852635-61852654 | Msa0562220:CDS | 35.0% | |
| GATATTGGAGATAACCTTGT+AGG | + | chr4_1:61852760-61852779 | None:intergenic | 35.0% | |
| TGTATTTGTGCTCATCTAGT+GGG | - | chr4_1:61852866-61852885 | Msa0562220:intron | 35.0% | |
| AGATAGCTTATGCTTCTGTT+TGG | - | chr4_1:61852960-61852979 | Msa0562220:intron | 35.0% | |
| CTTATAACAGCTTATGGACA+TGG | - | chr4_1:61853097-61853116 | Msa0562220:intron | 35.0% | |
| GTTCTTCTAAACAATATCCC+AGG | - | chr4_1:61853125-61853144 | Msa0562220:intron | 35.0% | |
| ! | AGCATTTAAGTTAGAAGCAC+TGG | - | chr4_1:61853290-61853309 | Msa0562220:intron | 35.0% |
| TTCCAAACAACACCTGATTA+TGG | - | chr4_1:61853332-61853351 | Msa0562220:intron | 35.0% | |
| CTGCAGAAATTATGAACTTG+AGG | - | chr4_1:61853565-61853584 | Msa0562220:CDS | 35.0% | |
| TGTGATATGTAGTGTATCTG+TGG | + | chr4_1:61853666-61853685 | None:intergenic | 35.0% | |
| CATTCCATGTGCATTTAGTT+TGG | - | chr4_1:61853702-61853721 | Msa0562220:intron | 35.0% | |
| ACAACCAAACTAAATGCACA+TGG | + | chr4_1:61853709-61853728 | None:intergenic | 35.0% | |
| AATAACTGGACACATTCCAA+AGG | - | chr4_1:61854032-61854051 | Msa0562220:intron | 35.0% | |
| !!! | CATAAATGTTTTGGAGACCA+AGG | - | chr4_1:61854144-61854163 | Msa0562220:intron | 35.0% |
| TTAGTTAGGTTTAGGAAAGG+AGG | - | chr4_1:61854206-61854225 | Msa0562220:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | + | chr4_1:61854374-61854393 | None:intergenic | 35.0% | |
| !!! | TTACCCTGTTTTTACACAAG+AGG | - | chr4_1:61854373-61854392 | Msa0562220:intron | 35.0% |
| GGGTCTATCTTACAAAAGAA+AGG | - | chr4_1:61854503-61854522 | Msa0562220:intron | 35.0% | |
| TTGAAGTAGAGAAATGCTTC+AGG | - | chr4_1:61854564-61854583 | Msa0562220:intron | 35.0% | |
| TATGTATGGGTCAGAAATGT+TGG | - | chr4_1:61854645-61854664 | Msa0562220:intron | 35.0% | |
| ATGTATGGGTCAGAAATGTT+GGG | - | chr4_1:61854646-61854665 | Msa0562220:intron | 35.0% | |
| GCAATCATGAGCATAAATGA+TGG | - | chr4_1:61854678-61854697 | Msa0562220:intron | 35.0% | |
| TGAGCATAAATGATGGTTGT+AGG | - | chr4_1:61854685-61854704 | Msa0562220:intron | 35.0% | |
| AAGTTAGGGTAGCTACTATA+TGG | - | chr4_1:61854826-61854845 | Msa0562220:intron | 35.0% | |
| TTCAACCTCGCATATTATGA+AGG | + | chr4_1:61854892-61854911 | None:intergenic | 35.0% | |
| ATAATATGCGAGGTTGAAGA+TGG | - | chr4_1:61854894-61854913 | Msa0562220:intron | 35.0% | |
| GTAACTCTTACAAATGGGTA+GGG | - | chr4_1:61854924-61854943 | Msa0562220:intron | 35.0% | |
| TAACTCTTACAAATGGGTAG+GGG | - | chr4_1:61854925-61854944 | Msa0562220:intron | 35.0% | |
| ! | ACATAGAATTTTCTGATGCC+GGG | + | chr4_1:61855006-61855025 | None:intergenic | 35.0% |
| AAACCAGTAATAACGCAAAC+AGG | + | chr4_1:61855155-61855174 | None:intergenic | 35.0% | |
| TTGATTACCAGTAGTTCAGT+TGG | - | chr4_1:61855224-61855243 | Msa0562220:intron | 35.0% | |
| ATAGACAAAGGGAAATCTTC+CGG | + | chr4_1:61855275-61855294 | None:intergenic | 35.0% | |
| GTACAATGGCTATAGACAAA+GGG | + | chr4_1:61855286-61855305 | None:intergenic | 35.0% | |
| ! | AAAGCTTCTTTTGTAGCGTA+TGG | + | chr4_1:61855369-61855388 | None:intergenic | 35.0% |
| GGTTTGATCTAATGTTCCAT+AGG | - | chr4_1:61855594-61855613 | Msa0562220:intron | 35.0% | |
| TTGATCTAATGTTCCATAGG+AGG | - | chr4_1:61855597-61855616 | Msa0562220:intron | 35.0% | |
| CTTAAGATGACATGGTTCAT+TGG | + | chr4_1:61855720-61855739 | None:intergenic | 35.0% | |
| TGAACCATGTCATCTTAAGA+AGG | - | chr4_1:61855721-61855740 | Msa0562220:intron | 35.0% | |
| CTTTCCTTCTTAAGATGACA+TGG | + | chr4_1:61855728-61855747 | None:intergenic | 35.0% | |
| !!! | TTTTCTTAGTCTTGAAGTCC+AGG | - | chr4_1:61855807-61855826 | Msa0562220:intron | 35.0% |
| !! | TTTCTTAGTCTTGAAGTCCA+GGG | - | chr4_1:61855808-61855827 | Msa0562220:intron | 35.0% |
| ! | CTCTGAAAAGCTAGAGAAAT+TGG | + | chr4_1:61855898-61855917 | None:intergenic | 35.0% |
| TAAACACAATTTCATGGGTG+TGG | + | chr4_1:61855951-61855970 | None:intergenic | 35.0% | |
| AGAAAAGAAACGAATATGGG+AGG | - | chr4_1:61856266-61856285 | Msa0562220:CDS | 35.0% | |
| GGCTTATATGATTCAGTTTC+TGG | - | chr4_1:61856287-61856306 | Msa0562220:CDS | 35.0% | |
| ! | CATTGTCGATCTCTTTTTCT+TGG | + | chr4_1:61856327-61856346 | None:intergenic | 35.0% |
| !! | TCGTAGAATTCCTACTTTTG+AGG | - | chr4_1:61856391-61856410 | Msa0562220:CDS | 35.0% |
| GAATCTTCATCCTCAAAAGT+AGG | + | chr4_1:61856404-61856423 | None:intergenic | 35.0% | |
| GGAGGAAAAAAAAATCACCA+AGG | + | chr4_1:61856437-61856456 | None:intergenic | 35.0% | |
| CAATGGCTTCTTTCATGATT+TGG | + | chr4_1:61856524-61856543 | None:intergenic | 35.0% | |
| !!! | TCTATTTTAATCCCAACCTG+AGG | + | chr4_1:61856569-61856588 | None:intergenic | 35.0% |
| AGTTACGTCTTGGTCGAAAT+CGG | + | chr4_1:61852353-61852372 | None:intergenic | 40.0% | |
| ! | TTTTGTGGCTGTTCTTCATC+GGG | + | chr4_1:61852471-61852490 | None:intergenic | 40.0% |
| ! | GTTTTGTGGCTGTTCTTCAT+CGG | + | chr4_1:61852472-61852491 | None:intergenic | 40.0% |
| ATGCGAAGGAGGTAATGATT+AGG | - | chr4_1:61852664-61852683 | Msa0562220:CDS | 40.0% | |
| GTGTATTTGTGCTCATCTAG+TGG | - | chr4_1:61852865-61852884 | Msa0562220:intron | 40.0% | |
| GCTCTCACAAATAATCTCAC+AGG | + | chr4_1:61852899-61852918 | None:intergenic | 40.0% | |
| ATCTACTAGCATAAGCACCT+GGG | + | chr4_1:61853145-61853164 | None:intergenic | 40.0% | |
| TATCTACTAGCATAAGCACC+TGG | + | chr4_1:61853146-61853165 | None:intergenic | 40.0% | |
| !! | GACCATAATCAGGTGTTGTT+TGG | + | chr4_1:61853337-61853356 | None:intergenic | 40.0% |
| !!! | TTTTGGCTCAGCCAGTAATA+AGG | - | chr4_1:61853378-61853397 | Msa0562220:intron | 40.0% |
| CAGCCAGTAATAAGGAAGAA+AGG | - | chr4_1:61853386-61853405 | Msa0562220:intron | 40.0% | |
| TCGCCTTTCTTCCTTATTAC+TGG | + | chr4_1:61853392-61853411 | None:intergenic | 40.0% | |
| AGTAATAAGGAAGAAAGGCG+AGG | - | chr4_1:61853391-61853410 | Msa0562220:intron | 40.0% | |
| GGAGAAGAAAATGTCACAAG+AGG | - | chr4_1:61853412-61853431 | Msa0562220:intron | 40.0% | |
| !! | CTTTTAGAAGCTGCTCAAAC+AGG | - | chr4_1:61853440-61853459 | Msa0562220:intron | 40.0% |
| CTGAAACAAAGCCTATACCA+AGG | + | chr4_1:61854063-61854082 | None:intergenic | 40.0% | |
| !! | GGTATAGGCTTTGTTTCAGA+TGG | - | chr4_1:61854064-61854083 | Msa0562220:intron | 40.0% |
| ACAACTCAAGAGAAATCCCT+TGG | + | chr4_1:61854164-61854183 | None:intergenic | 40.0% | |
| TTAGGTTTAGGAAAGGAGGA+TGG | - | chr4_1:61854210-61854229 | Msa0562220:intron | 40.0% | |
| ! | AGAGTACCCACAACTAAGTA+AGG | - | chr4_1:61854273-61854292 | Msa0562220:intron | 40.0% |
| GAGTACCCACAACTAAGTAA+GGG | - | chr4_1:61854274-61854293 | Msa0562220:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr4_1:61854348-61854367 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | + | chr4_1:61854379-61854398 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | + | chr4_1:61854380-61854399 | None:intergenic | 40.0% | |
| !! | TTACACAAGAGGCTGTTTCT+AGG | - | chr4_1:61854384-61854403 | Msa0562220:intron | 40.0% |
| GTTGTTGTCATGTGACTGTA+AGG | + | chr4_1:61854424-61854443 | None:intergenic | 40.0% | |
| ATGTCCCACAATATCCAAAC+AGG | - | chr4_1:61854536-61854555 | Msa0562220:intron | 40.0% | |
| CTGTCCTGTTTGGATATTGT+GGG | + | chr4_1:61854543-61854562 | None:intergenic | 40.0% | |
| ATGATGGTTGTAGGAATGAG+TGG | - | chr4_1:61854694-61854713 | Msa0562220:intron | 40.0% | |
| TTGTAGGAATGAGTGGAGTA+TGG | - | chr4_1:61854701-61854720 | Msa0562220:intron | 40.0% | |
| TGTAGGAATGAGTGGAGTAT+GGG | - | chr4_1:61854702-61854721 | Msa0562220:intron | 40.0% | |
| ! | CATATTATGAAGGCATGTGG+TGG | + | chr4_1:61854882-61854901 | None:intergenic | 40.0% |
| ! | TCGCATATTATGAAGGCATG+TGG | + | chr4_1:61854885-61854904 | None:intergenic | 40.0% |
| ACATGCCTTCATAATATGCG+AGG | - | chr4_1:61854884-61854903 | Msa0562220:intron | 40.0% | |
| GGTAACTCTTACAAATGGGT+AGG | - | chr4_1:61854923-61854942 | Msa0562220:intron | 40.0% | |
| AACTCTTACAAATGGGTAGG+GGG | - | chr4_1:61854926-61854945 | Msa0562220:intron | 40.0% | |
| ATAACGCAAACAGGTTGTTC+TGG | + | chr4_1:61855146-61855165 | None:intergenic | 40.0% | |
| CAACCTGTTTGCGTTATTAC+TGG | - | chr4_1:61855149-61855168 | Msa0562220:CDS | 40.0% | |
| CATCAAGAAAGGCTCTTACT+TGG | + | chr4_1:61855183-61855202 | None:intergenic | 40.0% | |
| GGTACAATGGCTATAGACAA+AGG | + | chr4_1:61855287-61855306 | None:intergenic | 40.0% | |
| AAGGAGTTCTCTCTTGATAC+AGG | - | chr4_1:61855319-61855338 | Msa0562220:CDS | 40.0% | |
| TTAGATCAAACCACTGCAGA+AGG | + | chr4_1:61855586-61855605 | None:intergenic | 40.0% | |
| ! | AACATCATAGTGGGGAAAAC+TGG | + | chr4_1:61855634-61855653 | None:intergenic | 40.0% |
| AAGCTAGAGAAATTGGGTGA+AGG | + | chr4_1:61855891-61855910 | None:intergenic | 40.0% | |
| !!! | TCTAGCTTTTCAGAGAGAGA+TGG | - | chr4_1:61855903-61855922 | Msa0562220:intron | 40.0% |
| CTGTAAGAGCTATTGCATGA+GGG | - | chr4_1:61856063-61856082 | Msa0562220:intron | 40.0% | |
| TGTAAGAGCTATTGCATGAG+GGG | - | chr4_1:61856064-61856083 | Msa0562220:intron | 40.0% | |
| !! | AAAAGCATTCATGTGGGAGT+TGG | - | chr4_1:61856100-61856119 | Msa0562220:intron | 40.0% |
| ! | GGGAGTTGGTTAATGATAGT+AGG | - | chr4_1:61856114-61856133 | Msa0562220:intron | 40.0% |
| !! | GGGATTATTTTGCAGCATTC+TGG | - | chr4_1:61856226-61856245 | Msa0562220:CDS | 40.0% |
| ! | GTCGATCTCTTTTTCTTGGT+TGG | + | chr4_1:61856323-61856342 | None:intergenic | 40.0% |
| AAGATTCTGACTAACTGCCT+TGG | - | chr4_1:61856417-61856436 | Msa0562220:CDS | 40.0% | |
| TTCATCACGATTCAAACCTC+AGG | - | chr4_1:61856550-61856569 | Msa0562220:intron | 40.0% | |
| AGGCCTGTTTCAGTAATCTT+GGG | - | chr4_1:61856602-61856621 | Msa0562220:CDS | 40.0% | |
| AGACCCAAGATTACTGAAAC+AGG | + | chr4_1:61856608-61856627 | None:intergenic | 40.0% | |
| ! | ATCTTGTCTCGGGTATTGTA+TGG | + | chr4_1:61856827-61856846 | None:intergenic | 40.0% |
| GAGATCGAATCTTCTACTGC+TGG | - | chr4_1:61852171-61852190 | Msa0562220:three_prime_UTR | 45.0% | |
| !! | AGATGAATTGTTCTGGGGTC+AGG | - | chr4_1:61852258-61852277 | Msa0562220:three_prime_UTR | 45.0% |
| CCAAGAAGAAGCTGAAATCG+CGG | - | chr4_1:61852315-61852334 | Msa0562220:three_prime_UTR | 45.0% | |
| TTGGAGAGAGAGTTACGTCT+TGG | + | chr4_1:61852363-61852382 | None:intergenic | 45.0% | |
| ATATCCTGGGAAGACGACAT+TGG | - | chr4_1:61852527-61852546 | Msa0562220:CDS | 45.0% | |
| TTCAGCTTGGCGAACAATGA+CGG | + | chr4_1:61852706-61852725 | None:intergenic | 45.0% | |
| GAATGGCTTCTCTTTCAGCT+TGG | + | chr4_1:61852719-61852738 | None:intergenic | 45.0% | |
| AGCTCTCAAAGCAACCTACA+AGG | - | chr4_1:61852743-61852762 | Msa0562220:intron | 45.0% | |
| ACTGGACACATTCCAAAGGA+AGG | - | chr4_1:61854036-61854055 | Msa0562220:intron | 45.0% | |
| ACATTCCAAAGGAAGGACCT+TGG | - | chr4_1:61854043-61854062 | Msa0562220:intron | 45.0% | |
| CTATACCAAGGTCCTTCCTT+TGG | + | chr4_1:61854051-61854070 | None:intergenic | 45.0% | |
| CAAAGGAAGGACCTTGGTAT+AGG | - | chr4_1:61854049-61854068 | Msa0562220:intron | 45.0% | |
| GTTTAGGAAAGGAGGATGGA+TGG | - | chr4_1:61854214-61854233 | Msa0562220:intron | 45.0% | |
| GGTTGCCCTTACTTAGTTGT+GGG | + | chr4_1:61854282-61854301 | None:intergenic | 45.0% | |
| ACAACTAAGTAAGGGCAACC+CGG | - | chr4_1:61854282-61854301 | Msa0562220:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr4_1:61854349-61854368 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr4_1:61854352-61854371 | None:intergenic | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | + | chr4_1:61854417-61854436 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | + | chr4_1:61854418-61854437 | None:intergenic | 45.0% | |
| !! | ACTTAGTTGTGGGTACTGAG+GGG | + | chr4_1:61854469-61854488 | None:intergenic | 45.0% |
| !! | CACTTAGTTGTGGGTACTGA+GGG | + | chr4_1:61854470-61854489 | None:intergenic | 45.0% |
| ! | ACACTTAGTTGTGGGTACTG+AGG | + | chr4_1:61854471-61854490 | None:intergenic | 45.0% |
| CCTGTCCTGTTTGGATATTG+TGG | + | chr4_1:61854544-61854563 | None:intergenic | 45.0% | |
| CCACAATATCCAAACAGGAC+AGG | - | chr4_1:61854541-61854560 | Msa0562220:intron | 45.0% | |
| CTACTTCAACCTGTCCTGTT+TGG | + | chr4_1:61854553-61854572 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr4_1:61855066-61855085 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr4_1:61855067-61855086 | None:intergenic | 45.0% |
| AAGAAAGGCTCTTACTTGGC+AGG | + | chr4_1:61855179-61855198 | None:intergenic | 45.0% | |
| GATGCTCAACTTGCGTCATT+TGG | - | chr4_1:61855764-61855783 | Msa0562220:intron | 45.0% | |
| TCCAGGGCACATACTATTGT+TGG | - | chr4_1:61855824-61855843 | Msa0562220:intron | 45.0% | |
| TCCAACAATAGTATGTGCCC+TGG | + | chr4_1:61855828-61855847 | None:intergenic | 45.0% | |
| TACAGCTTGACGTGTAGAGT+TGG | + | chr4_1:61856048-61856067 | None:intergenic | 45.0% | |
| GCTGTAAGAGCTATTGCATG+AGG | - | chr4_1:61856062-61856081 | Msa0562220:intron | 45.0% | |
| AATTCTACGAAACCGAGCCA+AGG | + | chr4_1:61856381-61856400 | None:intergenic | 45.0% | |
| ATCGTGATGAAGCACAGCAA+TGG | + | chr4_1:61856541-61856560 | None:intergenic | 45.0% | |
| TCACGATTCAAACCTCAGGT+TGG | - | chr4_1:61856554-61856573 | Msa0562220:intron | 45.0% | |
| CACGATTCAAACCTCAGGTT+GGG | - | chr4_1:61856555-61856574 | Msa0562220:intron | 45.0% | |
| GAGGCCTGTTTCAGTAATCT+TGG | - | chr4_1:61856601-61856620 | Msa0562220:CDS | 45.0% | |
| CAGTAATCTTGGGTCTTCTG+TGG | - | chr4_1:61856612-61856631 | Msa0562220:CDS | 45.0% | |
| !! | AATTGAATTAATTAATTAAT+CGG | + | chr4_1:61852398-61852417 | None:intergenic | 5.0% |
| GTGCGAGCGAGTTAGTACAA+TGG | - | chr4_1:61852123-61852142 | Msa0562220:three_prime_UTR | 50.0% | |
| CGAGCGAGTTAGTACAATGG+AGG | - | chr4_1:61852126-61852145 | Msa0562220:three_prime_UTR | 50.0% | |
| CCGCGATTTCAGCTTCTTCT+TGG | + | chr4_1:61852318-61852337 | None:intergenic | 50.0% | |
| TTAGCCAATGTCGTCTTCCC+AGG | + | chr4_1:61852534-61852553 | None:intergenic | 50.0% | |
| ! | GCGAACAATGACGGAAGTTC+TGG | + | chr4_1:61852697-61852716 | None:intergenic | 50.0% |
| !! | TGCTTTGAGAGCTTCGCGAA+TGG | + | chr4_1:61852736-61852755 | None:intergenic | 50.0% |
| !!! | GGAGCGAGTTTTAGCTAGAG+AGG | - | chr4_1:61853593-61853612 | Msa0562220:intron | 50.0% |
| CGCACATTCTTGAGACGTTG+TGG | + | chr4_1:61853829-61853848 | None:intergenic | 50.0% | |
| GGGTTGCCCTTACTTAGTTG+TGG | + | chr4_1:61854283-61854302 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr4_1:61854440-61854459 | Msa0562220:intron | 50.0% | |
| GTGGGCATACTGAGATGGAT+AGG | - | chr4_1:61854729-61854748 | Msa0562220:intron | 50.0% | |
| CGAGGTTGAAGATGGCATGT+TGG | - | chr4_1:61854902-61854921 | Msa0562220:intron | 50.0% | |
| TTATAGCCGACCCCACTTAG+TGG | - | chr4_1:61855053-61855072 | Msa0562220:intron | 50.0% | |
| TATAGCCGACCCCACTTAGT+GGG | - | chr4_1:61855054-61855073 | Msa0562220:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr4_1:61855062-61855081 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr4_1:61855068-61855087 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr4_1:61855065-61855084 | Msa0562220:intron | 50.0% | |
| ! | AGGTACCGTGATCCAAAGAC+TGG | - | chr4_1:61855339-61855358 | Msa0562220:CDS | 50.0% |
| GGTACCGTGATCCAAAGACT+GGG | - | chr4_1:61855340-61855359 | Msa0562220:CDS | 50.0% | |
| ! | ATTGGGTGAAGGCACATGCA+TGG | + | chr4_1:61855880-61855899 | None:intergenic | 50.0% |
| ACATCCACATGATCGGTCCT+TGG | - | chr4_1:61856361-61856380 | Msa0562220:CDS | 50.0% | |
| GGCTGTTCTTCATCGGGTTC+AGG | + | chr4_1:61852465-61852484 | None:intergenic | 55.0% | |
| CAACCAGGACGATGATGCGA+AGG | - | chr4_1:61852650-61852669 | Msa0562220:CDS | 55.0% | |
| !! | TGGGTACTGAGGGGTAACCT+TGG | + | chr4_1:61854460-61854479 | None:intergenic | 55.0% |
| TGAGTGGAGTATGGGACGAG+TGG | - | chr4_1:61854710-61854729 | Msa0562220:intron | 55.0% | |
| GAGTGGAGTATGGGACGAGT+GGG | - | chr4_1:61854711-61854730 | Msa0562220:intron | 55.0% | |
| GACGAGTGGGCATACTGAGA+TGG | - | chr4_1:61854724-61854743 | Msa0562220:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr4_1:61855060-61855079 | Msa0562220:intron | 55.0% | |
| GCAGCCCAGTCTTTGGATCA+CGG | + | chr4_1:61855347-61855366 | None:intergenic | 55.0% | |
| GGTCTGCAGTCATCCTCCTA+TGG | + | chr4_1:61855613-61855632 | None:intergenic | 55.0% | |
| CACATGATCGGTCCTTGGCT+CGG | - | chr4_1:61856366-61856385 | Msa0562220:CDS | 55.0% | |
| CGTGCATCTCGAGCGACAAG+AGG | - | chr4_1:61852196-61852215 | Msa0562220:three_prime_UTR | 60.0% | |
| CCTCCTTCGCATCATCGTCC+TGG | + | chr4_1:61852656-61852675 | None:intergenic | 60.0% | |
| CCAGGACGATGATGCGAAGG+AGG | - | chr4_1:61852653-61852672 | Msa0562220:CDS | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | + | chr4_1:61854304-61854323 | None:intergenic | 60.0% | |
| ACTGAAGCTCCCGCATACGC+AGG | - | chr4_1:61854308-61854327 | Msa0562220:intron | 60.0% | |
| CTGAAGCTCCCGCATACGCA+GGG | - | chr4_1:61854309-61854328 | Msa0562220:intron | 60.0% | |
| TTCCTGGACCCTGCGTATGC+GGG | + | chr4_1:61854320-61854339 | None:intergenic | 60.0% | |
| CTTCCTGGACCCTGCGTATG+CGG | + | chr4_1:61854321-61854340 | None:intergenic | 60.0% | |
| GCATACGCAGGGTCCAGGAA+GGG | - | chr4_1:61854320-61854339 | Msa0562220:intron | 60.0% | |
| CATACGCAGGGTCCAGGAAG+GGG | - | chr4_1:61854321-61854340 | Msa0562220:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+TGG | + | chr4_1:61854336-61854355 | None:intergenic | 60.0% |
| CAGGAAGGGGTCCCACCATT+TGG | - | chr4_1:61854334-61854353 | Msa0562220:intron | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr4_1:61854451-61854470 | None:intergenic | 60.0% | |
| GCGTATGGCAGCCCAGTCTT+TGG | + | chr4_1:61855354-61855373 | None:intergenic | 60.0% | |
| CGAGCCAAGGACCGATCATG+TGG | + | chr4_1:61856368-61856387 | None:intergenic | 60.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | + | chr4_1:61854303-61854322 | None:intergenic | 65.0% | |
| CGCATACGCAGGGTCCAGGA+AGG | - | chr4_1:61854319-61854338 | Msa0562220:intron | 65.0% | |
| CTCCCGCATACGCAGGGTCC+AGG | - | chr4_1:61854315-61854334 | Msa0562220:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 61852078 | 61856869 | 61852078 | ID=Msa0562220;Name=Msa0562220 |
| chr4_1 | mRNA | 61852078 | 61856869 | 61852078 | ID=Msa0562220-mRNA-1;Parent=Msa0562220;Name=Msa0562220-mRNA-1;_AED=0.04;_eAED=0.04;_QI=64|0.87|0.88|1|0.87|0.88|9|359|370 |
| chr4_1 | exon | 61852078 | 61852428 | 61852078 | ID=Msa0562220-mRNA-1:exon:19536;Parent=Msa0562220-mRNA-1 |
| chr4_1 | exon | 61852509 | 61852706 | 61852509 | ID=Msa0562220-mRNA-1:exon:19535;Parent=Msa0562220-mRNA-1 |
| chr4_1 | exon | 61853520 | 61853606 | 61853520 | ID=Msa0562220-mRNA-1:exon:19534;Parent=Msa0562220-mRNA-1 |
| chr4_1 | exon | 61853764 | 61853806 | 61853764 | ID=Msa0562220-mRNA-1:exon:19533;Parent=Msa0562220-mRNA-1 |
| chr4_1 | exon | 61855104 | 61855172 | 61855104 | ID=Msa0562220-mRNA-1:exon:19532;Parent=Msa0562220-mRNA-1 |
| chr4_1 | exon | 61855257 | 61855376 | 61855257 | ID=Msa0562220-mRNA-1:exon:19531;Parent=Msa0562220-mRNA-1 |
| chr4_1 | exon | 61855486 | 61855558 | 61855486 | ID=Msa0562220-mRNA-1:exon:19530;Parent=Msa0562220-mRNA-1 |
| chr4_1 | exon | 61856183 | 61856488 | 61856183 | ID=Msa0562220-mRNA-1:exon:19529;Parent=Msa0562220-mRNA-1 |
| chr4_1 | exon | 61856581 | 61856869 | 61856581 | ID=Msa0562220-mRNA-1:exon:19528;Parent=Msa0562220-mRNA-1 |
| chr4_1 | five_prime_UTR | 61856806 | 61856869 | 61856806 | ID=Msa0562220-mRNA-1:five_prime_utr;Parent=Msa0562220-mRNA-1 |
| chr4_1 | CDS | 61856581 | 61856805 | 61856581 | ID=Msa0562220-mRNA-1:cds;Parent=Msa0562220-mRNA-1 |
| chr4_1 | CDS | 61856183 | 61856488 | 61856183 | ID=Msa0562220-mRNA-1:cds;Parent=Msa0562220-mRNA-1 |
| chr4_1 | CDS | 61855486 | 61855558 | 61855486 | ID=Msa0562220-mRNA-1:cds;Parent=Msa0562220-mRNA-1 |
| chr4_1 | CDS | 61855257 | 61855376 | 61855257 | ID=Msa0562220-mRNA-1:cds;Parent=Msa0562220-mRNA-1 |
| chr4_1 | CDS | 61855104 | 61855172 | 61855104 | ID=Msa0562220-mRNA-1:cds;Parent=Msa0562220-mRNA-1 |
| chr4_1 | CDS | 61853764 | 61853806 | 61853764 | ID=Msa0562220-mRNA-1:cds;Parent=Msa0562220-mRNA-1 |
| chr4_1 | CDS | 61853520 | 61853606 | 61853520 | ID=Msa0562220-mRNA-1:cds;Parent=Msa0562220-mRNA-1 |
| chr4_1 | CDS | 61852517 | 61852706 | 61852517 | ID=Msa0562220-mRNA-1:cds;Parent=Msa0562220-mRNA-1 |
| chr4_1 | three_prime_UTR | 61852509 | 61852516 | 61852509 | ID=Msa0562220-mRNA-1:three_prime_utr;Parent=Msa0562220-mRNA-1 |
| chr4_1 | three_prime_UTR | 61852078 | 61852428 | 61852078 | ID=Msa0562220-mRNA-1:three_prime_utr;Parent=Msa0562220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
