AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0753460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753460 MtrunA17_Chr5g0397881 95.342 365 11 2 1 365 1 359 0.0 709
Msa0753460 MtrunA17_Chr6g0472421 45.745 376 119 14 5 353 7 324 2.25e-81 252
Msa0753460 MtrunA17_Chr1g0203601 45.773 343 117 11 6 347 5 279 2.72e-74 232
Msa0753460 MtrunA17_Chr3g0134031 46.087 230 113 4 1 219 1 230 4.67e-60 197
Msa0753460 MtrunA17_Chr5g0402291 45.490 255 112 7 17 260 2 240 1.23e-59 194
Msa0753460 MtrunA17_Chr5g0441531 44.248 226 101 4 14 239 15 215 5.99e-58 189
Msa0753460 MtrunA17_Chr7g0257331 44.724 199 75 3 18 216 16 179 3.48e-48 162
Msa0753460 MtrunA17_Chr5g0410881 72.000 100 26 1 22 121 30 127 6.74e-46 164
Msa0753460 MtrunA17_Chr8g0375041 42.211 199 85 3 17 215 2 170 9.73e-45 154
Msa0753460 MtrunA17_Chr6g0467041 60.952 105 41 0 24 128 22 126 7.22e-43 151
Msa0753460 MtrunA17_Chr7g0260331 65.957 94 32 0 22 115 47 140 3.52e-42 150
Msa0753460 MtrunA17_Chr1g0185131 67.021 94 31 0 22 115 30 123 5.62e-42 149
Msa0753460 MtrunA17_Chr8g0379701 64.356 101 35 1 15 115 4 103 1.26e-41 150
Msa0753460 MtrunA17_Chr4g0039891 63.265 98 36 0 24 121 12 109 1.77e-40 149
Msa0753460 MtrunA17_Chr4g0047421 37.624 202 89 3 21 218 30 198 2.48e-40 141
Msa0753460 MtrunA17_Chr8g0378061 60.577 104 41 0 25 128 23 126 5.06e-40 147
Msa0753460 MtrunA17_Chr3g0135831 62.500 96 36 0 22 117 44 139 2.76e-38 140
Msa0753460 MtrunA17_Chr4g0071051 63.441 93 34 0 22 114 99 191 5.00e-38 141
Msa0753460 MtrunA17_Chr1g0204741 63.830 94 34 0 22 115 38 131 1.21e-37 138
Msa0753460 MtrunA17_Chr6g0485571 59.184 98 40 0 18 115 5 102 3.90e-37 137
Msa0753460 MtrunA17_Chr2g0330821 52.137 117 56 0 12 128 67 183 7.30e-37 136
Msa0753460 MtrunA17_Chr2g0284481 51.240 121 58 1 11 131 3 122 1.39e-36 136
Msa0753460 MtrunA17_Chr8g0392001 59.140 93 37 1 24 115 22 114 2.65e-32 124
Msa0753460 MtrunA17_Chr1g0179321 63.636 66 24 0 18 83 43 108 2.03e-24 96.3
Msa0753460 MtrunA17_Chr4g0023771 54.054 74 32 2 11 83 3 75 3.10e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753460 AT4G11660.1 49.573 351 134 7 16 355 51 369 3.39e-90 276
Msa0753460 AT5G62020.1 46.302 311 116 8 1 305 1 266 9.70e-82 251
Msa0753460 AT4G36990.1 50.242 207 86 3 12 218 2 191 1.16e-61 199
Msa0753460 AT1G46264.1 37.248 298 172 5 19 306 29 321 4.54e-59 195
Msa0753460 AT2G41690.1 40.930 215 110 2 4 218 20 217 1.51e-48 164
Msa0753460 AT1G32330.1 65.289 121 38 2 1 121 16 132 6.73e-47 166
Msa0753460 AT1G32330.2 65.289 121 38 2 1 121 16 132 7.01e-47 166
Msa0753460 AT4G17750.1 61.667 120 46 0 2 121 30 149 1.37e-46 166
Msa0753460 AT3G02990.1 66.355 107 34 2 9 115 10 114 9.14e-43 155
Msa0753460 AT3G22830.1 67.347 98 32 0 18 115 55 152 6.65e-42 151
Msa0753460 AT4G13980.1 60.000 110 38 1 25 128 24 133 3.01e-40 148
Msa0753460 AT5G16820.1 67.708 96 30 1 20 115 24 118 7.68e-40 147
Msa0753460 AT5G16820.2 67.708 96 30 1 20 115 24 118 7.68e-40 147
Msa0753460 AT5G43840.1 63.830 94 34 0 22 115 17 110 2.74e-39 141
Msa0753460 AT2G26150.1 61.702 94 36 0 22 115 42 135 5.03e-39 142
Msa0753460 AT2G26150.4 61.702 94 36 0 22 115 42 135 5.03e-39 142
Msa0753460 AT3G63350.1 58.763 97 40 0 18 114 22 118 1.28e-38 139
Msa0753460 AT5G03720.2 64.211 95 33 1 21 115 53 146 5.13e-38 141
Msa0753460 AT5G03720.1 64.211 95 33 1 21 115 53 146 5.13e-38 141
Msa0753460 AT3G51910.1 60.215 93 37 0 22 114 27 119 1.09e-37 137
Msa0753460 AT5G54070.1 60.638 94 37 0 21 114 68 161 1.09e-37 138
Msa0753460 AT3G24520.1 65.217 92 32 0 24 115 17 108 1.17e-36 135
Msa0753460 AT4G18880.1 58.824 119 46 2 17 135 9 124 3.09e-35 133
Msa0753460 AT5G45710.3 58.621 116 44 3 20 135 10 121 1.26e-34 130
Msa0753460 AT5G45710.1 58.621 116 44 3 20 135 10 121 1.26e-34 130
Msa0753460 AT1G67970.1 60.215 93 36 1 24 115 19 111 1.01e-33 129
Msa0753460 AT4G18870.1 45.263 95 49 1 20 111 139 233 1.09e-22 97.1
Msa0753460 AT4G18870.1 47.191 89 42 3 25 111 14 99 3.53e-20 90.1
Msa0753460 AT1G77570.1 39.326 89 49 3 25 109 27 114 3.01e-13 67.0

Find 134 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATGTTCCTAAGCTGTTT+GGG 0.212139 5_2:+7107821 Msa0753460:CDS
TCTTCTTCCGACTCCGTTTC+CGG 0.215561 5_2:+7106563 Msa0753460:five_prime_UTR
TGTAACAGAAGGGAAAATTT+TGG 0.225929 5_2:+7107678 Msa0753460:CDS
GCTAATGAAACATTCCTTAT+AGG 0.235307 5_2:-7107709 None:intergenic
TAAAGGCCGTGTTTGGAATT+TGG 0.236573 5_2:+7108063 Msa0753460:three_prime_UTR
GTGTTTATTTCTAGGGATTT+CGG 0.268121 5_2:+7107197 Msa0753460:intron
AAGCTGTTTGGGGTTTCAAT+TGG 0.272470 5_2:+7107832 Msa0753460:CDS
CCTCATGTTCCTAAGCTGTT+TGG 0.282001 5_2:+7107820 Msa0753460:CDS
ATGATGAGTAATTATGCTTC+TGG 0.326687 5_2:+7107601 Msa0753460:CDS
TCCCACAAGCATGTCTAAAA+AGG 0.327270 5_2:-7108418 None:intergenic
ATGGAACAAGCTTCATAGTT+TGG 0.332696 5_2:+7106991 Msa0753460:CDS
CCGTTGATGATTTGGTTTCA+TGG 0.341139 5_2:+7106961 Msa0753460:CDS
ATTGAGTTGACGAACGAAAC+TGG 0.358502 5_2:-7107072 None:intergenic
ATGGTGTCTCCAGCAACTTC+TGG 0.358649 5_2:+7107391 Msa0753460:CDS
TGATTCTTCCGTTGATGATT+TGG 0.364300 5_2:+7106953 Msa0753460:CDS
AGGAGAGGATAGGAATAAAA+AGG 0.370793 5_2:-7106480 None:intergenic
CTGCCACCGGCGACGGCGTT+AGG 0.374761 5_2:-7106538 None:intergenic
AACGCATTCCATCTCTTTCA+AGG 0.375340 5_2:+7106598 Msa0753460:five_prime_UTR
GAAGTTGATGGCGACATTAC+CGG 0.375837 5_2:+7106845 Msa0753460:exon
AGCTGTTTGGGGTTTCAATT+GGG 0.377393 5_2:+7107833 Msa0753460:CDS
AGCAACTTCTGGTGATGAAC+AGG 0.397317 5_2:+7107402 Msa0753460:CDS
TTATTGTGTTTGAAATACTT+TGG 0.401377 5_2:-7107044 None:intergenic
AATACTATAATTATGTTACT+TGG 0.403069 5_2:-7108559 None:intergenic
CAGACACTAGCTGGTGTCAT+TGG 0.404857 5_2:+7108142 Msa0753460:three_prime_UTR
TGCTGCGACGGCACGGGGCG+TGG 0.405775 5_2:+7107654 Msa0753460:CDS
CTTAATGTGGGTGGAGCTGC+TGG 0.418056 5_2:+7107748 Msa0753460:CDS
TCTAATTTGATACATGTACT+AGG 0.423269 5_2:+7108506 Msa0753460:three_prime_UTR
ATAGTGGTAAAGGCCGTGTT+TGG 0.429939 5_2:+7108056 Msa0753460:exon
TACGAGTGCTGCGACGGCAC+GGG 0.438079 5_2:+7107648 Msa0753460:CDS
ATGCGTTGAAATATTCTAAC+CGG 0.439764 5_2:-7106582 None:intergenic
GACGGAGAATGAGGTTGAAC+CGG 0.444512 5_2:+7107870 Msa0753460:CDS
TTTGGAATTTGGATTATGTC+GGG 0.453154 5_2:+7108074 Msa0753460:three_prime_UTR
ACATGAGGTGCCTCAACCTC+TGG 0.453623 5_2:-7107805 None:intergenic
ATGTGAGACGACGAGTTTGA+TGG 0.466931 5_2:+7107780 Msa0753460:CDS
ATTGTTTACCTTGAAAGAGA+TGG 0.467486 5_2:-7106606 None:intergenic
GCCATAGCTGTTCCTGCTGC+CGG 0.467534 5_2:-7107313 None:intergenic
GTTTGGAATTTGGATTATGT+CGG 0.467678 5_2:+7108073 Msa0753460:three_prime_UTR
TTGGTTTCATGGAATGAAGA+TGG 0.472004 5_2:+7106972 Msa0753460:CDS
TGAAATATTCTAACCGGAAA+CGG 0.475649 5_2:-7106576 None:intergenic
TGTTCATCACCAGAAGTTGC+TGG 0.476217 5_2:-7107400 None:intergenic
GGTGTAATTAGGAACAGATC+TGG 0.477002 5_2:+7106818 Msa0753460:five_prime_UTR
AGAGATTCTAGAAGTTTCGA+AGG 0.477691 5_2:-7106500 None:intergenic
GCACCATTGTTCACCGCAAT+CGG 0.477786 5_2:-7107445 None:intergenic
CGCTAACCTAACGCCGTCGC+CGG 0.479775 5_2:+7106532 Msa0753460:five_prime_UTR
AGATCTGGAAAAGAAGTTGA+TGG 0.487529 5_2:+7106833 Msa0753460:exon
GATTCACCTGTTTGCTCCAC+CGG 0.494684 5_2:-7106864 None:intergenic
ACATTACCGGTGGAGCAAAC+AGG 0.498008 5_2:+7106858 Msa0753460:CDS
TGAACCGGAGAGAGAGGAAC+GGG 0.498202 5_2:+7107885 Msa0753460:CDS
CATGGCTAACAGACACTAGC+TGG 0.498441 5_2:+7108133 Msa0753460:three_prime_UTR
ATGTTACTTGGAAACAAAGT+TGG 0.498921 5_2:-7108547 None:intergenic
GCTGGAGACACCATTCTAAC+CGG 0.500615 5_2:-7107382 None:intergenic
ACTAGGATGCTTCCACCCTA+TGG 0.501720 5_2:+7108523 Msa0753460:three_prime_UTR
GTTGGAAATTGACGAAATAG+TGG 0.503816 5_2:+7108040 Msa0753460:CDS
GTCGAATTCATCTCCGATTG+CGG 0.505685 5_2:+7107432 Msa0753460:CDS
ATTGAAACCCCAAACAGCTT+AGG 0.506033 5_2:-7107829 None:intergenic
CAATTGGGCTTAAACGATGT+AGG 0.509913 5_2:+7107848 Msa0753460:CDS
TTAGCAAATTCCCACCGGTC+AGG 0.510367 5_2:-7107229 None:intergenic
TCATTCTCTTCAACTAACTC+CGG 0.512986 5_2:-7107502 None:intergenic
TTCGGAAAGTTGTACCTGAC+CGG 0.514506 5_2:+7107215 Msa0753460:CDS
CTACGAGTGCTGCGACGGCA+CGG 0.515613 5_2:+7107647 Msa0753460:CDS
TTCTAGAAGTTTCGAAGGAG+AGG 0.516926 5_2:-7106495 None:intergenic
ATCTTCTACGAGTGCTGCGA+CGG 0.517274 5_2:+7107642 Msa0753460:CDS
TGTTCCCGTTCCTCTCTCTC+CGG 0.518493 5_2:-7107889 None:intergenic
ATTCTAACCGGAAACGGAGT+CGG 0.518554 5_2:-7106570 None:intergenic
TGGAAACAAAGTTGGTCCAT+AGG 0.519124 5_2:-7108539 None:intergenic
GGAAACAAAGTTGGTCCATA+GGG 0.527244 5_2:-7108538 None:intergenic
CTGTTAGCCATGTTCAAACA+TGG 0.530720 5_2:-7108122 None:intergenic
TATGGCGGCACCGGTTAGAA+TGG 0.532149 5_2:+7107372 Msa0753460:CDS
AATTGACGAAATAGTGGTAA+AGG 0.534223 5_2:+7108046 Msa0753460:exon
AAAAGGAGCGTGTGTGTTGG+TGG 0.534804 5_2:-7106463 None:intergenic
TCATGTTCCTAAGCTGTTTG+GGG 0.536796 5_2:+7107822 Msa0753460:CDS
AACAGTAGCTATGGCGGCAC+CGG 0.542259 5_2:+7107363 Msa0753460:CDS
TGAGGTTGAACCGGAGAGAG+AGG 0.546548 5_2:+7107879 Msa0753460:CDS
CATGAGTTGCACCACTGCGC+CGG 0.546633 5_2:+7107483 Msa0753460:CDS
CGGTGGGAATTTGCTAATGA+CGG 0.547176 5_2:+7107235 Msa0753460:CDS
GGTGGAGCAAACAGGTGAAT+CGG 0.547365 5_2:+7106866 Msa0753460:CDS
GCCGGCAGCAGGAACAGCTA+TGG 0.547975 5_2:+7107312 Msa0753460:CDS
GAAGAAACTGCCACCGGCGA+CGG 0.548277 5_2:-7106545 None:intergenic
TAATACTGTAACAGTAGCTA+TGG 0.548334 5_2:+7107354 Msa0753460:CDS
TCTTTCTCTAAGCAAAATTG+TGG 0.554230 5_2:-7108323 None:intergenic
CGGATGATCAAGAACGTCGT+TGG 0.556514 5_2:+7108022 Msa0753460:CDS
ACGATGTAGGACGGAGAATG+AGG 0.556638 5_2:+7107861 Msa0753460:CDS
ACGAGTGCTGCGACGGCACG+GGG 0.561173 5_2:+7107649 Msa0753460:CDS
TTTGATGGAACCAGAGGTTG+AGG 0.561367 5_2:+7107795 Msa0753460:CDS
CTAGCTGGTGTCATTGGACA+AGG 0.568184 5_2:+7108148 Msa0753460:three_prime_UTR
AAATCTCTAGCAAATTCAGC+AGG 0.569125 5_2:-7107017 None:intergenic
ACGCTTGCTTGAGCAAAGCA+TGG 0.569500 5_2:-7108268 None:intergenic
TGGTGATGGTGATGGTGACT+CGG 0.574712 5_2:+7108002 Msa0753460:CDS
TCTCCGATTGCGGTGAACAA+TGG 0.579507 5_2:+7107442 Msa0753460:CDS
CGGGGCGTGGTTGTAACAGA+AGG 0.579523 5_2:+7107667 Msa0753460:CDS
GAAGTTTCGAAGGAGAGGAT+AGG 0.579811 5_2:-7106490 None:intergenic
AACAGGTGAATCGGCGACGG+CGG 0.583900 5_2:+7106875 Msa0753460:CDS
AATGAGCTAAGTCAATTGAA+AGG 0.584859 5_2:+7107556 Msa0753460:CDS
AAGGAATGTTTCATTAGCTG+AGG 0.585509 5_2:+7107714 Msa0753460:CDS
CCTCGTGATGGTGATGGTGA+TGG 0.588325 5_2:+7107994 Msa0753460:CDS
ATCAAACTCGTCGTCTCACA+TGG 0.592517 5_2:-7107778 None:intergenic
AAAGGAGCGTGTGTGTTGGT+GGG 0.603469 5_2:-7106462 None:intergenic
AACAAAGTTGGTCCATAGGG+TGG 0.604166 5_2:-7108535 None:intergenic
GCAAACAGGTGAATCGGCGA+CGG 0.608757 5_2:+7106872 Msa0753460:CDS
AACTTCTGGTGATGAACAGG+TGG 0.612326 5_2:+7107405 Msa0753460:CDS
AGTTAGTTGAAGAGAATGAA+AGG 0.612844 5_2:+7107506 Msa0753460:CDS
CCATGAAACCAAATCATCAA+CGG 0.613347 5_2:-7106961 None:intergenic
TAACCTAACGCCGTCGCCGG+TGG 0.614840 5_2:+7106535 Msa0753460:five_prime_UTR
GGAAAGTTGTACCTGACCGG+TGG 0.614886 5_2:+7107218 Msa0753460:CDS
TCTGAACCTCGTGATGGTGA+TGG 0.617342 5_2:+7107988 Msa0753460:CDS
TTCAACTAACTCCGGCGCAG+TGG 0.622278 5_2:-7107494 None:intergenic
GATGCAAACACAATCCTCGC+AGG 0.623759 5_2:+7107939 Msa0753460:CDS
GCAGGAGACTGATCGAGGAT+CGG 0.626303 5_2:+7107957 Msa0753460:CDS
TCCTCGCAGGAGACTGATCG+AGG 0.628520 5_2:+7107952 Msa0753460:CDS
GAAAGTTGTACCTGACCGGT+GGG 0.631205 5_2:+7107219 Msa0753460:CDS
TACTGTAACAGTAGCTATGG+CGG 0.634074 5_2:+7107357 Msa0753460:CDS
AATGTGGGTGGAGCTGCTGG+CGG 0.634893 5_2:+7107751 Msa0753460:CDS
GGAAAATGTAGTGCTTAATG+TGG 0.635559 5_2:+7107735 Msa0753460:CDS
TTGAACCGGAGAGAGAGGAA+CGG 0.637385 5_2:+7107884 Msa0753460:CDS
AATGTAGTGCTTAATGTGGG+TGG 0.639772 5_2:+7107739 Msa0753460:CDS
ATGACACCCATGTTTGAACA+TGG 0.639922 5_2:+7108115 Msa0753460:three_prime_UTR
GAAAATGTAGTGCTTAATGT+GGG 0.644997 5_2:+7107736 Msa0753460:CDS
CGTCATTAGCAAATTCCCAC+CGG 0.646656 5_2:-7107234 None:intergenic
GACGAGTTTGATGGAACCAG+AGG 0.648812 5_2:+7107789 Msa0753460:CDS
CCAAACAGCTTAGGAACATG+AGG 0.651312 5_2:-7107820 None:intergenic
CATAATCCAAATTCCAAACA+CGG 0.652013 5_2:-7108069 None:intergenic
TGGGCTTAAACGATGTAGGA+CGG 0.657843 5_2:+7107852 Msa0753460:CDS
TCCTCGATCAGTCTCCTGCG+AGG 0.667916 5_2:-7107953 None:intergenic
TCGGAAGAAGAAACTGCCAC+CGG 0.668279 5_2:-7106551 None:intergenic
AGGAACAGCTATGGCGACAG+CGG 0.668564 5_2:+7107321 Msa0753460:CDS
GGGGCGTGGTTGTAACAGAA+GGG 0.668865 5_2:+7107668 Msa0753460:CDS
AAGGAGCGTGTGTGTTGGTG+GGG 0.675490 5_2:-7106461 None:intergenic
ATTTGCTTCGAGATATACAG+CGG 0.678269 5_2:+7107278 Msa0753460:CDS
GTTGATGGCGACATTACCGG+TGG 0.679162 5_2:+7106848 Msa0753460:exon
GCTAATGACGGATTTCGACG+AGG 0.685443 5_2:+7107247 Msa0753460:CDS
TGTTAGCCATGTTCAAACAT+GGG 0.695320 5_2:-7108121 None:intergenic
GTGAAATCTGAACCTCGTGA+TGG 0.700758 5_2:+7107982 Msa0753460:CDS
CCATCACCATCACCATCACG+AGG 0.701913 5_2:-7107994 None:intergenic
TAGCTGGTGTCATTGGACAA+GGG 0.714141 5_2:+7108149 Msa0753460:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTATGATGTTAAATA+TGG - chr5_2:7106755-7106774 None:intergenic 10.0%
!! AATTATTATGATGTTAAATA+TGG - chr5_2:7106755-7106774 None:intergenic 10.0%
!! ATAGATTATTAGATTAGAAT+AGG + chr5_2:7106725-7106744 Msa0753460:intron 15.0%
!!! CATAATAATTTTGTTTGATT+AGG + chr5_2:7106765-7106784 Msa0753460:intron 15.0%
!! AAAAAAGAAAGTAAAACAAA+AGG - chr5_2:7107149-7107168 None:intergenic 15.0%
!!! TTTGTTTTACTTTCTTTTTT+AGG + chr5_2:7107149-7107168 Msa0753460:intron 15.0%
!!! TAAATTTTGTGTTTATTTCT+AGG + chr5_2:7107189-7107208 Msa0753460:intron 15.0%
!!! AAATTTTGTGTTTATTTCTA+GGG + chr5_2:7107190-7107209 Msa0753460:intron 15.0%
!! AATACTATAATTATGTTACT+TGG - chr5_2:7108562-7108581 None:intergenic 15.0%
!! ATAGATTATTAGATTAGAAT+AGG + chr5_2:7106725-7106744 Msa0753460:intron 15.0%
!!! CATAATAATTTTGTTTGATT+AGG + chr5_2:7106765-7106784 Msa0753460:intron 15.0%
!! AAAAAAGAAAGTAAAACAAA+AGG - chr5_2:7107149-7107168 None:intergenic 15.0%
!!! TTTGTTTTACTTTCTTTTTT+AGG + chr5_2:7107149-7107168 Msa0753460:intron 15.0%
!!! TAAATTTTGTGTTTATTTCT+AGG + chr5_2:7107189-7107208 Msa0753460:intron 15.0%
!!! AAATTTTGTGTTTATTTCTA+GGG + chr5_2:7107190-7107209 Msa0753460:intron 15.0%
!! AATACTATAATTATGTTACT+TGG - chr5_2:7108562-7108581 None:intergenic 15.0%
!! ACAAAGTATGATATTAACTA+AGG - chr5_2:7106666-7106685 None:intergenic 20.0%
!! ATGAACTAGATACAAAAATT+AGG + chr5_2:7106796-7106815 Msa0753460:five_prime_UTR 20.0%
!! TGAACTAGATACAAAAATTA+GGG + chr5_2:7106797-7106816 Msa0753460:five_prime_UTR 20.0%
!!! TTATTGTGTTTGAAATACTT+TGG - chr5_2:7107047-7107066 None:intergenic 20.0%
!! ACAAAGTATGATATTAACTA+AGG - chr5_2:7106666-7106685 None:intergenic 20.0%
!! ATGAACTAGATACAAAAATT+AGG + chr5_2:7106796-7106815 Msa0753460:five_prime_UTR 20.0%
!! TGAACTAGATACAAAAATTA+GGG + chr5_2:7106797-7106816 Msa0753460:five_prime_UTR 20.0%
!!! TTATTGTGTTTGAAATACTT+TGG - chr5_2:7107047-7107066 None:intergenic 20.0%
! TATACTAAGCATGCATAATA+CGG - chr5_2:7106702-7106721 None:intergenic 25.0%
! ACAAAAATTAGGGTGTAATT+AGG + chr5_2:7106807-7106826 Msa0753460:five_prime_UTR 25.0%
! TCTAATTTGATACATGTACT+AGG + chr5_2:7108506-7108525 Msa0753460:three_prime_UTR 25.0%
! TATACTAAGCATGCATAATA+CGG - chr5_2:7106702-7106721 None:intergenic 25.0%
! ACAAAAATTAGGGTGTAATT+AGG + chr5_2:7106807-7106826 Msa0753460:five_prime_UTR 25.0%
! TCTAATTTGATACATGTACT+AGG + chr5_2:7108506-7108525 Msa0753460:three_prime_UTR 25.0%
TGAAATATTCTAACCGGAAA+CGG - chr5_2:7106579-7106598 None:intergenic 30.0%
ATGCGTTGAAATATTCTAAC+CGG - chr5_2:7106585-7106604 None:intergenic 30.0%
ATTGTTTACCTTGAAAGAGA+TGG - chr5_2:7106609-7106628 None:intergenic 30.0%
!! GTGTTTATTTCTAGGGATTT+CGG + chr5_2:7107197-7107216 Msa0753460:intron 30.0%
TAATACTGTAACAGTAGCTA+TGG + chr5_2:7107354-7107373 Msa0753460:CDS 30.0%
AGTTAGTTGAAGAGAATGAA+AGG + chr5_2:7107506-7107525 Msa0753460:CDS 30.0%
AATGAGCTAAGTCAATTGAA+AGG + chr5_2:7107556-7107575 Msa0753460:CDS 30.0%
ATGATGAGTAATTATGCTTC+TGG + chr5_2:7107601-7107620 Msa0753460:CDS 30.0%
! TGTAACAGAAGGGAAAATTT+TGG + chr5_2:7107678-7107697 Msa0753460:CDS 30.0%
! TTTTGGATCTTTTGCCTATA+AGG + chr5_2:7107695-7107714 Msa0753460:CDS 30.0%
GCTAATGAAACATTCCTTAT+AGG - chr5_2:7107712-7107731 None:intergenic 30.0%
GAAAATGTAGTGCTTAATGT+GGG + chr5_2:7107736-7107755 Msa0753460:CDS 30.0%
AATTGACGAAATAGTGGTAA+AGG + chr5_2:7108046-7108065 Msa0753460:exon 30.0%
CATAATCCAAATTCCAAACA+CGG - chr5_2:7108072-7108091 None:intergenic 30.0%
! GTTTGGAATTTGGATTATGT+CGG + chr5_2:7108073-7108092 Msa0753460:three_prime_UTR 30.0%
! TTTGGAATTTGGATTATGTC+GGG + chr5_2:7108074-7108093 Msa0753460:three_prime_UTR 30.0%
!! GGTGTCATGTTTCAAATTTT+AGG - chr5_2:7108103-7108122 None:intergenic 30.0%
TCTTTCTCTAAGCAAAATTG+TGG - chr5_2:7108326-7108345 None:intergenic 30.0%
! ATGTTACTTGGAAACAAAGT+TGG - chr5_2:7108550-7108569 None:intergenic 30.0%
TGAAATATTCTAACCGGAAA+CGG - chr5_2:7106579-7106598 None:intergenic 30.0%
ATGCGTTGAAATATTCTAAC+CGG - chr5_2:7106585-7106604 None:intergenic 30.0%
ATTGTTTACCTTGAAAGAGA+TGG - chr5_2:7106609-7106628 None:intergenic 30.0%
!! GTGTTTATTTCTAGGGATTT+CGG + chr5_2:7107197-7107216 Msa0753460:intron 30.0%
TAATACTGTAACAGTAGCTA+TGG + chr5_2:7107354-7107373 Msa0753460:CDS 30.0%
AGTTAGTTGAAGAGAATGAA+AGG + chr5_2:7107506-7107525 Msa0753460:CDS 30.0%
AATGAGCTAAGTCAATTGAA+AGG + chr5_2:7107556-7107575 Msa0753460:CDS 30.0%
ATGATGAGTAATTATGCTTC+TGG + chr5_2:7107601-7107620 Msa0753460:CDS 30.0%
! TGTAACAGAAGGGAAAATTT+TGG + chr5_2:7107678-7107697 Msa0753460:CDS 30.0%
! TTTTGGATCTTTTGCCTATA+AGG + chr5_2:7107695-7107714 Msa0753460:CDS 30.0%
GCTAATGAAACATTCCTTAT+AGG - chr5_2:7107712-7107731 None:intergenic 30.0%
GAAAATGTAGTGCTTAATGT+GGG + chr5_2:7107736-7107755 Msa0753460:CDS 30.0%
AATTGACGAAATAGTGGTAA+AGG + chr5_2:7108046-7108065 Msa0753460:exon 30.0%
CATAATCCAAATTCCAAACA+CGG - chr5_2:7108072-7108091 None:intergenic 30.0%
! GTTTGGAATTTGGATTATGT+CGG + chr5_2:7108073-7108092 Msa0753460:three_prime_UTR 30.0%
! TTTGGAATTTGGATTATGTC+GGG + chr5_2:7108074-7108093 Msa0753460:three_prime_UTR 30.0%
!! GGTGTCATGTTTCAAATTTT+AGG - chr5_2:7108103-7108122 None:intergenic 30.0%
TCTTTCTCTAAGCAAAATTG+TGG - chr5_2:7108326-7108345 None:intergenic 30.0%
! ATGTTACTTGGAAACAAAGT+TGG - chr5_2:7108550-7108569 None:intergenic 30.0%
AGGAGAGGATAGGAATAAAA+AGG - chr5_2:7106483-7106502 None:intergenic 35.0%
! AGAGATTCTAGAAGTTTCGA+AGG - chr5_2:7106503-7106522 None:intergenic 35.0%
AGATCTGGAAAAGAAGTTGA+TGG + chr5_2:7106833-7106852 Msa0753460:exon 35.0%
! TGATACGTTTTCGTCAGAAA+CGG - chr5_2:7106924-7106943 None:intergenic 35.0%
!! TGATTCTTCCGTTGATGATT+TGG + chr5_2:7106953-7106972 Msa0753460:CDS 35.0%
CCATGAAACCAAATCATCAA+CGG - chr5_2:7106964-7106983 None:intergenic 35.0%
TTGGTTTCATGGAATGAAGA+TGG + chr5_2:7106972-7106991 Msa0753460:CDS 35.0%
ATGGAACAAGCTTCATAGTT+TGG + chr5_2:7106991-7107010 Msa0753460:CDS 35.0%
AAATCTCTAGCAAATTCAGC+AGG - chr5_2:7107020-7107039 None:intergenic 35.0%
ATTTGCTTCGAGATATACAG+CGG + chr5_2:7107278-7107297 Msa0753460:CDS 35.0%
TCATTCTCTTCAACTAACTC+CGG - chr5_2:7107505-7107524 None:intergenic 35.0%
AAGGAATGTTTCATTAGCTG+AGG + chr5_2:7107714-7107733 Msa0753460:CDS 35.0%
GGAAAATGTAGTGCTTAATG+TGG + chr5_2:7107735-7107754 Msa0753460:CDS 35.0%
GTTGGAAATTGACGAAATAG+TGG + chr5_2:7108040-7108059 Msa0753460:CDS 35.0%
TGTTAGCCATGTTCAAACAT+GGG - chr5_2:7108124-7108143 None:intergenic 35.0%
! TCCTTTTTAGACATGCTTGT+GGG + chr5_2:7108417-7108436 Msa0753460:three_prime_UTR 35.0%
AGGAGAGGATAGGAATAAAA+AGG - chr5_2:7106483-7106502 None:intergenic 35.0%
! AGAGATTCTAGAAGTTTCGA+AGG - chr5_2:7106503-7106522 None:intergenic 35.0%
AGATCTGGAAAAGAAGTTGA+TGG + chr5_2:7106833-7106852 Msa0753460:exon 35.0%
! TGATACGTTTTCGTCAGAAA+CGG - chr5_2:7106924-7106943 None:intergenic 35.0%
!! TGATTCTTCCGTTGATGATT+TGG + chr5_2:7106953-7106972 Msa0753460:CDS 35.0%
CCATGAAACCAAATCATCAA+CGG - chr5_2:7106964-7106983 None:intergenic 35.0%
TTGGTTTCATGGAATGAAGA+TGG + chr5_2:7106972-7106991 Msa0753460:CDS 35.0%
ATGGAACAAGCTTCATAGTT+TGG + chr5_2:7106991-7107010 Msa0753460:CDS 35.0%
AAATCTCTAGCAAATTCAGC+AGG - chr5_2:7107020-7107039 None:intergenic 35.0%
ATTTGCTTCGAGATATACAG+CGG + chr5_2:7107278-7107297 Msa0753460:CDS 35.0%
TCATTCTCTTCAACTAACTC+CGG - chr5_2:7107505-7107524 None:intergenic 35.0%
AAGGAATGTTTCATTAGCTG+AGG + chr5_2:7107714-7107733 Msa0753460:CDS 35.0%
GGAAAATGTAGTGCTTAATG+TGG + chr5_2:7107735-7107754 Msa0753460:CDS 35.0%
GTTGGAAATTGACGAAATAG+TGG + chr5_2:7108040-7108059 Msa0753460:CDS 35.0%
TGTTAGCCATGTTCAAACAT+GGG - chr5_2:7108124-7108143 None:intergenic 35.0%
! TCCTTTTTAGACATGCTTGT+GGG + chr5_2:7108417-7108436 Msa0753460:three_prime_UTR 35.0%
! ATAAAAAGGAGCGTGTGTGT+TGG - chr5_2:7106469-7106488 None:intergenic 40.0%
! TTCTAGAAGTTTCGAAGGAG+AGG - chr5_2:7106498-7106517 None:intergenic 40.0%
AACGCATTCCATCTCTTTCA+AGG + chr5_2:7106598-7106617 Msa0753460:five_prime_UTR 40.0%
GGTGTAATTAGGAACAGATC+TGG + chr5_2:7106818-7106837 Msa0753460:five_prime_UTR 40.0%
!! CCGTTGATGATTTGGTTTCA+TGG + chr5_2:7106961-7106980 Msa0753460:CDS 40.0%
!! ATTGAGTTGACGAACGAAAC+TGG - chr5_2:7107075-7107094 None:intergenic 40.0%
ACAGCGGAGAAAAATATTGC+CGG + chr5_2:7107294-7107313 Msa0753460:CDS 40.0%
TACTGTAACAGTAGCTATGG+CGG + chr5_2:7107357-7107376 Msa0753460:CDS 40.0%
AATGTAGTGCTTAATGTGGG+TGG + chr5_2:7107739-7107758 Msa0753460:CDS 40.0%
CTCATGTTCCTAAGCTGTTT+GGG + chr5_2:7107821-7107840 Msa0753460:CDS 40.0%
TCATGTTCCTAAGCTGTTTG+GGG + chr5_2:7107822-7107841 Msa0753460:CDS 40.0%
ATTGAAACCCCAAACAGCTT+AGG - chr5_2:7107832-7107851 None:intergenic 40.0%
! AAGCTGTTTGGGGTTTCAAT+TGG + chr5_2:7107832-7107851 Msa0753460:CDS 40.0%
! AGCTGTTTGGGGTTTCAATT+GGG + chr5_2:7107833-7107852 Msa0753460:CDS 40.0%
CAATTGGGCTTAAACGATGT+AGG + chr5_2:7107848-7107867 Msa0753460:CDS 40.0%
! TAAAGGCCGTGTTTGGAATT+TGG + chr5_2:7108063-7108082 Msa0753460:three_prime_UTR 40.0%
ATGACACCCATGTTTGAACA+TGG + chr5_2:7108115-7108134 Msa0753460:three_prime_UTR 40.0%
CTGTTAGCCATGTTCAAACA+TGG - chr5_2:7108125-7108144 None:intergenic 40.0%
! GTCCTTTTTAGACATGCTTG+TGG + chr5_2:7108416-7108435 Msa0753460:three_prime_UTR 40.0%
TCCCACAAGCATGTCTAAAA+AGG - chr5_2:7108421-7108440 None:intergenic 40.0%
! GGAAACAAAGTTGGTCCATA+GGG - chr5_2:7108541-7108560 None:intergenic 40.0%
! TGGAAACAAAGTTGGTCCAT+AGG - chr5_2:7108542-7108561 None:intergenic 40.0%
! ATAAAAAGGAGCGTGTGTGT+TGG - chr5_2:7106469-7106488 None:intergenic 40.0%
! TTCTAGAAGTTTCGAAGGAG+AGG - chr5_2:7106498-7106517 None:intergenic 40.0%
AACGCATTCCATCTCTTTCA+AGG + chr5_2:7106598-7106617 Msa0753460:five_prime_UTR 40.0%
GGTGTAATTAGGAACAGATC+TGG + chr5_2:7106818-7106837 Msa0753460:five_prime_UTR 40.0%
!! CCGTTGATGATTTGGTTTCA+TGG + chr5_2:7106961-7106980 Msa0753460:CDS 40.0%
!! ATTGAGTTGACGAACGAAAC+TGG - chr5_2:7107075-7107094 None:intergenic 40.0%
ACAGCGGAGAAAAATATTGC+CGG + chr5_2:7107294-7107313 Msa0753460:CDS 40.0%
TACTGTAACAGTAGCTATGG+CGG + chr5_2:7107357-7107376 Msa0753460:CDS 40.0%
AATGTAGTGCTTAATGTGGG+TGG + chr5_2:7107739-7107758 Msa0753460:CDS 40.0%
CTCATGTTCCTAAGCTGTTT+GGG + chr5_2:7107821-7107840 Msa0753460:CDS 40.0%
TCATGTTCCTAAGCTGTTTG+GGG + chr5_2:7107822-7107841 Msa0753460:CDS 40.0%
ATTGAAACCCCAAACAGCTT+AGG - chr5_2:7107832-7107851 None:intergenic 40.0%
! AAGCTGTTTGGGGTTTCAAT+TGG + chr5_2:7107832-7107851 Msa0753460:CDS 40.0%
! AGCTGTTTGGGGTTTCAATT+GGG + chr5_2:7107833-7107852 Msa0753460:CDS 40.0%
CAATTGGGCTTAAACGATGT+AGG + chr5_2:7107848-7107867 Msa0753460:CDS 40.0%
! TAAAGGCCGTGTTTGGAATT+TGG + chr5_2:7108063-7108082 Msa0753460:three_prime_UTR 40.0%
ATGACACCCATGTTTGAACA+TGG + chr5_2:7108115-7108134 Msa0753460:three_prime_UTR 40.0%
CTGTTAGCCATGTTCAAACA+TGG - chr5_2:7108125-7108144 None:intergenic 40.0%
! GTCCTTTTTAGACATGCTTG+TGG + chr5_2:7108416-7108435 Msa0753460:three_prime_UTR 40.0%
TCCCACAAGCATGTCTAAAA+AGG - chr5_2:7108421-7108440 None:intergenic 40.0%
! GGAAACAAAGTTGGTCCATA+GGG - chr5_2:7108541-7108560 None:intergenic 40.0%
! TGGAAACAAAGTTGGTCCAT+AGG - chr5_2:7108542-7108561 None:intergenic 40.0%
GAAGTTTCGAAGGAGAGGAT+AGG - chr5_2:7106493-7106512 None:intergenic 45.0%
ATTCTAACCGGAAACGGAGT+CGG - chr5_2:7106573-7106592 None:intergenic 45.0%
!! GAAGTTGATGGCGACATTAC+CGG + chr5_2:7106845-7106864 Msa0753460:exon 45.0%
TTCGGAAAGTTGTACCTGAC+CGG + chr5_2:7107215-7107234 Msa0753460:CDS 45.0%
CGTCATTAGCAAATTCCCAC+CGG - chr5_2:7107237-7107256 None:intergenic 45.0%
!! CGGTGGGAATTTGCTAATGA+CGG + chr5_2:7107235-7107254 Msa0753460:CDS 45.0%
AGAAAAATATTGCCGGCAGC+AGG + chr5_2:7107301-7107320 Msa0753460:CDS 45.0%
TGTTCATCACCAGAAGTTGC+TGG - chr5_2:7107403-7107422 None:intergenic 45.0%
! AGCAACTTCTGGTGATGAAC+AGG + chr5_2:7107402-7107421 Msa0753460:CDS 45.0%
! AACTTCTGGTGATGAACAGG+TGG + chr5_2:7107405-7107424 Msa0753460:CDS 45.0%
GTCGAATTCATCTCCGATTG+CGG + chr5_2:7107432-7107451 Msa0753460:CDS 45.0%
ATCAAACTCGTCGTCTCACA+TGG - chr5_2:7107781-7107800 None:intergenic 45.0%
ATGTGAGACGACGAGTTTGA+TGG + chr5_2:7107780-7107799 Msa0753460:CDS 45.0%
TTTGATGGAACCAGAGGTTG+AGG + chr5_2:7107795-7107814 Msa0753460:CDS 45.0%
CCAAACAGCTTAGGAACATG+AGG - chr5_2:7107823-7107842 None:intergenic 45.0%
CCTCATGTTCCTAAGCTGTT+TGG + chr5_2:7107820-7107839 Msa0753460:CDS 45.0%
TGGGCTTAAACGATGTAGGA+CGG + chr5_2:7107852-7107871 Msa0753460:CDS 45.0%
GTGAAATCTGAACCTCGTGA+TGG + chr5_2:7107982-7108001 Msa0753460:CDS 45.0%
ATAGTGGTAAAGGCCGTGTT+TGG + chr5_2:7108056-7108075 Msa0753460:exon 45.0%
!! TAGCTGGTGTCATTGGACAA+GGG + chr5_2:7108149-7108168 Msa0753460:three_prime_UTR 45.0%
! AACAAAGTTGGTCCATAGGG+TGG - chr5_2:7108538-7108557 None:intergenic 45.0%
GAAGTTTCGAAGGAGAGGAT+AGG - chr5_2:7106493-7106512 None:intergenic 45.0%
ATTCTAACCGGAAACGGAGT+CGG - chr5_2:7106573-7106592 None:intergenic 45.0%
!! GAAGTTGATGGCGACATTAC+CGG + chr5_2:7106845-7106864 Msa0753460:exon 45.0%
TTCGGAAAGTTGTACCTGAC+CGG + chr5_2:7107215-7107234 Msa0753460:CDS 45.0%
CGTCATTAGCAAATTCCCAC+CGG - chr5_2:7107237-7107256 None:intergenic 45.0%
!! CGGTGGGAATTTGCTAATGA+CGG + chr5_2:7107235-7107254 Msa0753460:CDS 45.0%
AGAAAAATATTGCCGGCAGC+AGG + chr5_2:7107301-7107320 Msa0753460:CDS 45.0%
TGTTCATCACCAGAAGTTGC+TGG - chr5_2:7107403-7107422 None:intergenic 45.0%
! AGCAACTTCTGGTGATGAAC+AGG + chr5_2:7107402-7107421 Msa0753460:CDS 45.0%
! AACTTCTGGTGATGAACAGG+TGG + chr5_2:7107405-7107424 Msa0753460:CDS 45.0%
GTCGAATTCATCTCCGATTG+CGG + chr5_2:7107432-7107451 Msa0753460:CDS 45.0%
ATCAAACTCGTCGTCTCACA+TGG - chr5_2:7107781-7107800 None:intergenic 45.0%
ATGTGAGACGACGAGTTTGA+TGG + chr5_2:7107780-7107799 Msa0753460:CDS 45.0%
TTTGATGGAACCAGAGGTTG+AGG + chr5_2:7107795-7107814 Msa0753460:CDS 45.0%
CCAAACAGCTTAGGAACATG+AGG - chr5_2:7107823-7107842 None:intergenic 45.0%
CCTCATGTTCCTAAGCTGTT+TGG + chr5_2:7107820-7107839 Msa0753460:CDS 45.0%
TGGGCTTAAACGATGTAGGA+CGG + chr5_2:7107852-7107871 Msa0753460:CDS 45.0%
GTGAAATCTGAACCTCGTGA+TGG + chr5_2:7107982-7108001 Msa0753460:CDS 45.0%
ATAGTGGTAAAGGCCGTGTT+TGG + chr5_2:7108056-7108075 Msa0753460:exon 45.0%
!! TAGCTGGTGTCATTGGACAA+GGG + chr5_2:7108149-7108168 Msa0753460:three_prime_UTR 45.0%
! AACAAAGTTGGTCCATAGGG+TGG - chr5_2:7108538-7108557 None:intergenic 45.0%
!! AAATTAATTAATTGATTATA+TGG - chr5_2:7106642-7106661 None:intergenic 5.0%
!! AAATTAATTAATTGATTATA+TGG - chr5_2:7106642-7106661 None:intergenic 5.0%
! AAAGGAGCGTGTGTGTTGGT+GGG - chr5_2:7106465-7106484 None:intergenic 50.0%
! AAAAGGAGCGTGTGTGTTGG+TGG - chr5_2:7106466-7106485 None:intergenic 50.0%
TCGGAAGAAGAAACTGCCAC+CGG - chr5_2:7106554-7106573 None:intergenic 50.0%
TCTTCTTCCGACTCCGTTTC+CGG + chr5_2:7106563-7106582 Msa0753460:five_prime_UTR 50.0%
ACATTACCGGTGGAGCAAAC+AGG + chr5_2:7106858-7106877 Msa0753460:CDS 50.0%
GATTCACCTGTTTGCTCCAC+CGG - chr5_2:7106867-7106886 None:intergenic 50.0%
GGTGGAGCAAACAGGTGAAT+CGG + chr5_2:7106866-7106885 Msa0753460:CDS 50.0%
! GTTTTCGTCAGAAACGGCGT+CGG - chr5_2:7106918-7106937 None:intergenic 50.0%
GAAAGTTGTACCTGACCGGT+GGG + chr5_2:7107219-7107238 Msa0753460:CDS 50.0%
TTAGCAAATTCCCACCGGTC+AGG - chr5_2:7107232-7107251 None:intergenic 50.0%
!! GCTAATGACGGATTTCGACG+AGG + chr5_2:7107247-7107266 Msa0753460:CDS 50.0%
GCTGGAGACACCATTCTAAC+CGG - chr5_2:7107385-7107404 None:intergenic 50.0%
ATGGTGTCTCCAGCAACTTC+TGG + chr5_2:7107391-7107410 Msa0753460:CDS 50.0%
TCTCCGATTGCGGTGAACAA+TGG + chr5_2:7107442-7107461 Msa0753460:CDS 50.0%
GCACCATTGTTCACCGCAAT+CGG - chr5_2:7107448-7107467 None:intergenic 50.0%
! ATCTTCTACGAGTGCTGCGA+CGG + chr5_2:7107642-7107661 Msa0753460:CDS 50.0%
GACGAGTTTGATGGAACCAG+AGG + chr5_2:7107789-7107808 Msa0753460:CDS 50.0%
ACGATGTAGGACGGAGAATG+AGG + chr5_2:7107861-7107880 Msa0753460:CDS 50.0%
GACGGAGAATGAGGTTGAAC+CGG + chr5_2:7107870-7107889 Msa0753460:CDS 50.0%
TTGAACCGGAGAGAGAGGAA+CGG + chr5_2:7107884-7107903 Msa0753460:CDS 50.0%
GATGCAAACACAATCCTCGC+AGG + chr5_2:7107939-7107958 Msa0753460:CDS 50.0%
! TCTGAACCTCGTGATGGTGA+TGG + chr5_2:7107988-7108007 Msa0753460:CDS 50.0%
!! TGGTGATGGTGATGGTGACT+CGG + chr5_2:7108002-7108021 Msa0753460:CDS 50.0%
CGGATGATCAAGAACGTCGT+TGG + chr5_2:7108022-7108041 Msa0753460:CDS 50.0%
CATGGCTAACAGACACTAGC+TGG + chr5_2:7108133-7108152 Msa0753460:three_prime_UTR 50.0%
!! CAGACACTAGCTGGTGTCAT+TGG + chr5_2:7108142-7108161 Msa0753460:three_prime_UTR 50.0%
!! CTAGCTGGTGTCATTGGACA+AGG + chr5_2:7108148-7108167 Msa0753460:three_prime_UTR 50.0%
ACGCTTGCTTGAGCAAAGCA+TGG - chr5_2:7108271-7108290 None:intergenic 50.0%
ACTAGGATGCTTCCACCCTA+TGG + chr5_2:7108523-7108542 Msa0753460:three_prime_UTR 50.0%
! AAAGGAGCGTGTGTGTTGGT+GGG - chr5_2:7106465-7106484 None:intergenic 50.0%
! AAAAGGAGCGTGTGTGTTGG+TGG - chr5_2:7106466-7106485 None:intergenic 50.0%
TCGGAAGAAGAAACTGCCAC+CGG - chr5_2:7106554-7106573 None:intergenic 50.0%
TCTTCTTCCGACTCCGTTTC+CGG + chr5_2:7106563-7106582 Msa0753460:five_prime_UTR 50.0%
ACATTACCGGTGGAGCAAAC+AGG + chr5_2:7106858-7106877 Msa0753460:CDS 50.0%
GATTCACCTGTTTGCTCCAC+CGG - chr5_2:7106867-7106886 None:intergenic 50.0%
GGTGGAGCAAACAGGTGAAT+CGG + chr5_2:7106866-7106885 Msa0753460:CDS 50.0%
! GTTTTCGTCAGAAACGGCGT+CGG - chr5_2:7106918-7106937 None:intergenic 50.0%
GAAAGTTGTACCTGACCGGT+GGG + chr5_2:7107219-7107238 Msa0753460:CDS 50.0%
TTAGCAAATTCCCACCGGTC+AGG - chr5_2:7107232-7107251 None:intergenic 50.0%
!! GCTAATGACGGATTTCGACG+AGG + chr5_2:7107247-7107266 Msa0753460:CDS 50.0%
GCTGGAGACACCATTCTAAC+CGG - chr5_2:7107385-7107404 None:intergenic 50.0%
ATGGTGTCTCCAGCAACTTC+TGG + chr5_2:7107391-7107410 Msa0753460:CDS 50.0%
TCTCCGATTGCGGTGAACAA+TGG + chr5_2:7107442-7107461 Msa0753460:CDS 50.0%
GCACCATTGTTCACCGCAAT+CGG - chr5_2:7107448-7107467 None:intergenic 50.0%
! ATCTTCTACGAGTGCTGCGA+CGG + chr5_2:7107642-7107661 Msa0753460:CDS 50.0%
GACGAGTTTGATGGAACCAG+AGG + chr5_2:7107789-7107808 Msa0753460:CDS 50.0%
ACGATGTAGGACGGAGAATG+AGG + chr5_2:7107861-7107880 Msa0753460:CDS 50.0%
GACGGAGAATGAGGTTGAAC+CGG + chr5_2:7107870-7107889 Msa0753460:CDS 50.0%
TTGAACCGGAGAGAGAGGAA+CGG + chr5_2:7107884-7107903 Msa0753460:CDS 50.0%
GATGCAAACACAATCCTCGC+AGG + chr5_2:7107939-7107958 Msa0753460:CDS 50.0%
! TCTGAACCTCGTGATGGTGA+TGG + chr5_2:7107988-7108007 Msa0753460:CDS 50.0%
!! TGGTGATGGTGATGGTGACT+CGG + chr5_2:7108002-7108021 Msa0753460:CDS 50.0%
CGGATGATCAAGAACGTCGT+TGG + chr5_2:7108022-7108041 Msa0753460:CDS 50.0%
CATGGCTAACAGACACTAGC+TGG + chr5_2:7108133-7108152 Msa0753460:three_prime_UTR 50.0%
!! CAGACACTAGCTGGTGTCAT+TGG + chr5_2:7108142-7108161 Msa0753460:three_prime_UTR 50.0%
!! CTAGCTGGTGTCATTGGACA+AGG + chr5_2:7108148-7108167 Msa0753460:three_prime_UTR 50.0%
ACGCTTGCTTGAGCAAAGCA+TGG - chr5_2:7108271-7108290 None:intergenic 50.0%
ACTAGGATGCTTCCACCCTA+TGG + chr5_2:7108523-7108542 Msa0753460:three_prime_UTR 50.0%
! AAGGAGCGTGTGTGTTGGTG+GGG - chr5_2:7106464-7106483 None:intergenic 55.0%
!! GTTGATGGCGACATTACCGG+TGG + chr5_2:7106848-7106867 Msa0753460:exon 55.0%
GCAAACAGGTGAATCGGCGA+CGG + chr5_2:7106872-7106891 Msa0753460:CDS 55.0%
GGAAAGTTGTACCTGACCGG+TGG + chr5_2:7107218-7107237 Msa0753460:CDS 55.0%
AGGAACAGCTATGGCGACAG+CGG + chr5_2:7107321-7107340 Msa0753460:CDS 55.0%
AACAGTAGCTATGGCGGCAC+CGG + chr5_2:7107363-7107382 Msa0753460:CDS 55.0%
!! TATGGCGGCACCGGTTAGAA+TGG + chr5_2:7107372-7107391 Msa0753460:CDS 55.0%
TTCAACTAACTCCGGCGCAG+TGG - chr5_2:7107497-7107516 None:intergenic 55.0%
GGGGCGTGGTTGTAACAGAA+GGG + chr5_2:7107668-7107687 Msa0753460:CDS 55.0%
CTTAATGTGGGTGGAGCTGC+TGG + chr5_2:7107748-7107767 Msa0753460:CDS 55.0%
! ACATGAGGTGCCTCAACCTC+TGG - chr5_2:7107808-7107827 None:intergenic 55.0%
TGAGGTTGAACCGGAGAGAG+AGG + chr5_2:7107879-7107898 Msa0753460:CDS 55.0%
TGAACCGGAGAGAGAGGAAC+GGG + chr5_2:7107885-7107904 Msa0753460:CDS 55.0%
TGTTCCCGTTCCTCTCTCTC+CGG - chr5_2:7107892-7107911 None:intergenic 55.0%
GCAGGAGACTGATCGAGGAT+CGG + chr5_2:7107957-7107976 Msa0753460:CDS 55.0%
CCATCACCATCACCATCACG+AGG - chr5_2:7107997-7108016 None:intergenic 55.0%
!! CCTCGTGATGGTGATGGTGA+TGG + chr5_2:7107994-7108013 Msa0753460:CDS 55.0%
! AAGGAGCGTGTGTGTTGGTG+GGG - chr5_2:7106464-7106483 None:intergenic 55.0%
!! GTTGATGGCGACATTACCGG+TGG + chr5_2:7106848-7106867 Msa0753460:exon 55.0%
GCAAACAGGTGAATCGGCGA+CGG + chr5_2:7106872-7106891 Msa0753460:CDS 55.0%
GGAAAGTTGTACCTGACCGG+TGG + chr5_2:7107218-7107237 Msa0753460:CDS 55.0%
AGGAACAGCTATGGCGACAG+CGG + chr5_2:7107321-7107340 Msa0753460:CDS 55.0%
AACAGTAGCTATGGCGGCAC+CGG + chr5_2:7107363-7107382 Msa0753460:CDS 55.0%
!! TATGGCGGCACCGGTTAGAA+TGG + chr5_2:7107372-7107391 Msa0753460:CDS 55.0%
TTCAACTAACTCCGGCGCAG+TGG - chr5_2:7107497-7107516 None:intergenic 55.0%
GGGGCGTGGTTGTAACAGAA+GGG + chr5_2:7107668-7107687 Msa0753460:CDS 55.0%
CTTAATGTGGGTGGAGCTGC+TGG + chr5_2:7107748-7107767 Msa0753460:CDS 55.0%
! ACATGAGGTGCCTCAACCTC+TGG - chr5_2:7107808-7107827 None:intergenic 55.0%
TGAGGTTGAACCGGAGAGAG+AGG + chr5_2:7107879-7107898 Msa0753460:CDS 55.0%
TGAACCGGAGAGAGAGGAAC+GGG + chr5_2:7107885-7107904 Msa0753460:CDS 55.0%
TGTTCCCGTTCCTCTCTCTC+CGG - chr5_2:7107892-7107911 None:intergenic 55.0%
GCAGGAGACTGATCGAGGAT+CGG + chr5_2:7107957-7107976 Msa0753460:CDS 55.0%
CCATCACCATCACCATCACG+AGG - chr5_2:7107997-7108016 None:intergenic 55.0%
!! CCTCGTGATGGTGATGGTGA+TGG + chr5_2:7107994-7108013 Msa0753460:CDS 55.0%
GAAGAAACTGCCACCGGCGA+CGG - chr5_2:7106548-7106567 None:intergenic 60.0%
AACAGGTGAATCGGCGACGG+CGG + chr5_2:7106875-7106894 Msa0753460:CDS 60.0%
GCCATAGCTGTTCCTGCTGC+CGG - chr5_2:7107316-7107335 None:intergenic 60.0%
CATGAGTTGCACCACTGCGC+CGG + chr5_2:7107483-7107502 Msa0753460:CDS 60.0%
CGGGGCGTGGTTGTAACAGA+AGG + chr5_2:7107667-7107686 Msa0753460:CDS 60.0%
AATGTGGGTGGAGCTGCTGG+CGG + chr5_2:7107751-7107770 Msa0753460:CDS 60.0%
TCCTCGCAGGAGACTGATCG+AGG + chr5_2:7107952-7107971 Msa0753460:CDS 60.0%
TCCTCGATCAGTCTCCTGCG+AGG - chr5_2:7107956-7107975 None:intergenic 60.0%
GAAGAAACTGCCACCGGCGA+CGG - chr5_2:7106548-7106567 None:intergenic 60.0%
AACAGGTGAATCGGCGACGG+CGG + chr5_2:7106875-7106894 Msa0753460:CDS 60.0%
GCCATAGCTGTTCCTGCTGC+CGG - chr5_2:7107316-7107335 None:intergenic 60.0%
CATGAGTTGCACCACTGCGC+CGG + chr5_2:7107483-7107502 Msa0753460:CDS 60.0%
CGGGGCGTGGTTGTAACAGA+AGG + chr5_2:7107667-7107686 Msa0753460:CDS 60.0%
AATGTGGGTGGAGCTGCTGG+CGG + chr5_2:7107751-7107770 Msa0753460:CDS 60.0%
TCCTCGCAGGAGACTGATCG+AGG + chr5_2:7107952-7107971 Msa0753460:CDS 60.0%
TCCTCGATCAGTCTCCTGCG+AGG - chr5_2:7107956-7107975 None:intergenic 60.0%
CGCTAACCTAACGCCGTCGC+CGG + chr5_2:7106532-7106551 Msa0753460:five_prime_UTR 65.0%
TAACCTAACGCCGTCGCCGG+TGG + chr5_2:7106535-7106554 Msa0753460:five_prime_UTR 65.0%
GCCGGCAGCAGGAACAGCTA+TGG + chr5_2:7107312-7107331 Msa0753460:CDS 65.0%
! CTACGAGTGCTGCGACGGCA+CGG + chr5_2:7107647-7107666 Msa0753460:CDS 65.0%
! TACGAGTGCTGCGACGGCAC+GGG + chr5_2:7107648-7107667 Msa0753460:CDS 65.0%
CGCTAACCTAACGCCGTCGC+CGG + chr5_2:7106532-7106551 Msa0753460:five_prime_UTR 65.0%
TAACCTAACGCCGTCGCCGG+TGG + chr5_2:7106535-7106554 Msa0753460:five_prime_UTR 65.0%
GCCGGCAGCAGGAACAGCTA+TGG + chr5_2:7107312-7107331 Msa0753460:CDS 65.0%
! CTACGAGTGCTGCGACGGCA+CGG + chr5_2:7107647-7107666 Msa0753460:CDS 65.0%
! TACGAGTGCTGCGACGGCAC+GGG + chr5_2:7107648-7107667 Msa0753460:CDS 65.0%
! ACGAGTGCTGCGACGGCACG+GGG + chr5_2:7107649-7107668 Msa0753460:CDS 70.0%
! ACGAGTGCTGCGACGGCACG+GGG + chr5_2:7107649-7107668 Msa0753460:CDS 70.0%
CTGCCACCGGCGACGGCGTT+AGG - chr5_2:7106541-7106560 None:intergenic 75.0%
CTGCCACCGGCGACGGCGTT+AGG - chr5_2:7106541-7106560 None:intergenic 75.0%
! TGCTGCGACGGCACGGGGCG+TGG + chr5_2:7107654-7107673 Msa0753460:CDS 80.0%
! TGCTGCGACGGCACGGGGCG+TGG + chr5_2:7107654-7107673 Msa0753460:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 7106459 7108600 7106459 ID=Msa0753460;Name=Msa0753460
chr5_2 mRNA 7106459 7108600 7106459 ID=Msa0753460-mRNA-1;Parent=Msa0753460;Name=Msa0753460-mRNA-1;_AED=0.06;_eAED=0.06;_QI=226|1|1|1|0.5|0.33|3|541|365
chr5_2 exon 7106459 7106619 7106459 ID=Msa0753460-mRNA-1:exon:3162;Parent=Msa0753460-mRNA-1
chr5_2 exon 7106787 7107100 7106787 ID=Msa0753460-mRNA-1:exon:3163;Parent=Msa0753460-mRNA-1
chr5_2 exon 7107211 7108600 7107211 ID=Msa0753460-mRNA-1:exon:3164;Parent=Msa0753460-mRNA-1
chr5_2 five_prime_UTR 7106459 7106619 7106459 ID=Msa0753460-mRNA-1:five_prime_utr;Parent=Msa0753460-mRNA-1
chr5_2 five_prime_UTR 7106787 7106851 7106787 ID=Msa0753460-mRNA-1:five_prime_utr;Parent=Msa0753460-mRNA-1
chr5_2 CDS 7106852 7107100 7106852 ID=Msa0753460-mRNA-1:cds;Parent=Msa0753460-mRNA-1
chr5_2 CDS 7107211 7108059 7107211 ID=Msa0753460-mRNA-1:cds;Parent=Msa0753460-mRNA-1
chr5_2 three_prime_UTR 7108060 7108600 7108060 ID=Msa0753460-mRNA-1:three_prime_utr;Parent=Msa0753460-mRNA-1
Gene Sequence

>Msa0753460

ATGGCGACATTACCGGTGGAGCAAACAGGTGAATCGGCGACGGCGGAGTCGCAGAGATCGATTCCGACGCCGTTTCTGACGAAAACGTATCAACTTGTTGATGATTCTTCCGTTGATGATTTGGTTTCATGGAATGAAGATGGAACAAGCTTCATAGTTTGGAAGCCTGCTGAATTTGCTAGAGATTTGCTTCCAAAGTATTTCAAACACAATAATTTCTCCAGTTTCGTTCGTCAACTCAATACTTATGGATTTCGGAAAGTTGTACCTGACCGGTGGGAATTTGCTAATGACGGATTTCGACGAGGCGAGAAAAATTTGCTTCGAGATATACAGCGGAGAAAAATATTGCCGGCAGCAGGAACAGCTATGGCGACAGCGGTAGCTGCAGCTAATACTGTAACAGTAGCTATGGCGGCACCGGTTAGAATGGTGTCTCCAGCAACTTCTGGTGATGAACAGGTGGTTTCGTCGAATTCATCTCCGATTGCGGTGAACAATGGTGCTACAGTGCAGCGTAGCATGAGTTGCACCACTGCGCCGGAGTTAGTTGAAGAGAATGAAAGGCTTAAGAAAGAGAATATGCAATTGAGTAATGAGCTAAGTCAATTGAAAGGTCTTTGTAATAATATACTTGCTATGATGAGTAATTATGCTTCTGGTTTTAGTAGACAGTTAGAATCTTCTACGAGTGCTGCGACGGCACGGGGCGTGGTTGTAACAGAAGGGAAAATTTTGGATCTTTTGCCTATAAGGAATGTTTCATTAGCTGAGGAAAATGTAGTGCTTAATGTGGGTGGAGCTGCTGGCGGTGTGCCATGTGAGACGACGAGTTTGATGGAACCAGAGGTTGAGGCACCTCATGTTCCTAAGCTGTTTGGGGTTTCAATTGGGCTTAAACGATGTAGGACGGAGAATGAGGTTGAACCGGAGAGAGAGGAACGGGAACAGCATCAACAAATTCGAATGCAAGTGCAGATGCAAACACAATCCTCGCAGGAGACTGATCGAGGATCGGATGTGAAATCTGAACCTCGTGATGGTGATGGTGATGGTGACTCGGATGATCAAGAACGTCGTTGGAAATTGACGAAATAG

Protein sequence

>Msa0753460

MATLPVEQTGESATAESQRSIPTPFLTKTYQLVDDSSVDDLVSWNEDGTSFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDGFRRGEKNLLRDIQRRKILPAAGTAMATAVAAANTVTVAMAAPVRMVSPATSGDEQVVSSNSSPIAVNNGATVQRSMSCTTAPELVEENERLKKENMQLSNELSQLKGLCNNILAMMSNYASGFSRQLESSTSAATARGVVVTEGKILDLLPIRNVSLAEENVVLNVGGAAGGVPCETTSLMEPEVEAPHVPKLFGVSIGLKRCRTENEVEPEREEREQHQQIRMQVQMQTQSSQETDRGSDVKSEPRDGDGDGDSDDQERRWKLTK*