AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1426470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426470 MtrunA17_Chr4g0076251 61.511 278 20 5 1 191 293 570 5.91e-97 293
Msa1426470 MtrunA17_Chr2g0290411 39.789 284 64 9 1 191 280 549 3.23e-39 141
Msa1426470 MtrunA17_Chr8g0344311 34.400 250 84 11 1 172 320 567 6.75e-15 72.8
Msa1426470 MtrunA17_Chr8g0391771 32.411 253 87 10 1 172 324 573 3.28e-13 67.8
Msa1426470 MtrunA17_Chr1g0161371 30.279 251 95 8 1 172 319 568 3.55e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426470 AT4G17220.1 37.168 226 70 7 1 168 273 484 4.88e-27 107
Msa1426470 AT1G24764.2 31.907 257 85 10 1 172 188 439 9.57e-14 69.7
Msa1426470 AT1G24764.3 31.907 257 85 10 1 172 400 651 1.29e-13 69.3
Msa1426470 AT1G24764.1 31.907 257 85 10 1 172 341 592 1.34e-13 69.3
Msa1426470 AT2G01750.2 29.496 278 94 10 1 188 340 605 9.03e-13 67.0
Msa1426470 AT2G01750.1 29.496 278 94 10 1 188 340 605 9.28e-13 66.6
Msa1426470 AT1G68060.1 28.571 266 108 8 1 187 333 595 3.29e-12 65.1

Find 44 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTATCAGCAACTTTACT+TGG 0.264053 tig0026031:-21119 Msa1426470:intergenic
ATAAGTTCCCCAACAGAAAA+TGG 0.325320 tig0026031:+20927 Msa1426470:CDS
TTCACCATTTGCAATTCTAT+TGG 0.325874 tig0026031:-20105 Msa1426470:intergenic
TATCAGCCACACTAACCTTT+TGG 0.326069 tig0026031:-21922 Msa1426470:intergenic
AGTCATTTGGTTTCTTGCTT+TGG 0.339262 tig0026031:-21244 Msa1426470:intergenic
TGCAGTGACGATTTGGTGTC+AGG 0.351949 tig0026031:+21269 Msa1426470:CDS
TGATATATTGACAGTTTGTT+TGG 0.367532 tig0026031:+19989 Msa1426470:five_prime_UTR
TCTTCTAGCCATTGCTTGAC+AGG 0.383618 tig0026031:-20164 Msa1426470:intergenic
CCGCTCTACTTCCATGGACT+TGG 0.386322 tig0026031:-21805 Msa1426470:intergenic
CTTCACTTTCAGCATTGAAC+TGG 0.389403 tig0026031:-21187 Msa1426470:intergenic
TAATAAGTTCAGATGATAAC+AGG 0.405133 tig0026031:+21877 Msa1426470:CDS
CAGAAAACATGTTGAAGAAA+AGG 0.410590 tig0026031:+21094 Msa1426470:intron
GCTAGCAAGGGTAAAAGTTT+CGG 0.430627 tig0026031:+20082 Msa1426470:five_prime_UTR
TCGTCACTGCACGAGTCATT+TGG 0.432134 tig0026031:-21257 Msa1426470:intergenic
TGAAAAGGAAAATGAGATAC+AGG 0.451771 tig0026031:+21142 Msa1426470:CDS
AGTTGCTGATAGTGGTGAAA+AGG 0.454137 tig0026031:+21127 Msa1426470:CDS
TTTCTTCCGCTCTACTTCCA+TGG 0.458047 tig0026031:-21811 Msa1426470:intergenic
TGACTCGTGCAGTGACGATT+TGG 0.459803 tig0026031:+21262 Msa1426470:CDS
CTTCCAATCGCAGAAGCTCT+TGG 0.464587 tig0026031:-20978 Msa1426470:intergenic
CAACCAAGAGCTTCTGCGAT+TGG 0.480093 tig0026031:+20975 Msa1426470:CDS
CACTAGAGAGGGAGCTAGCA+AGG 0.481581 tig0026031:+20069 Msa1426470:five_prime_UTR
CCAAGTAAAGTTGCTGATAG+TGG 0.491571 tig0026031:+21119 Msa1426470:CDS
TTTGTTTGGTTGATCTTATG+TGG 0.496728 tig0026031:+20003 Msa1426470:five_prime_UTR
AGATGCAGCTGCTAGAGAAA+AGG 0.532223 tig0026031:+21842 Msa1426470:CDS
GAAACAAAGACTCCTCCAAA+AGG 0.543913 tig0026031:+21907 Msa1426470:CDS
TCGGCCAATAGAATTGCAAA+TGG 0.544219 tig0026031:+20101 Msa1426470:five_prime_UTR
TGATCTTATGTGGTAACTTG+TGG 0.547591 tig0026031:+20013 Msa1426470:five_prime_UTR
TGATGCACTGACCAAGTCCA+TGG 0.550345 tig0026031:+21794 Msa1426470:CDS
AGAAGAGAGAAGGATTATGC+AGG 0.567503 tig0026031:+20181 Msa1426470:CDS
TGCAGCTGCTAGAGAAAAGG+AGG 0.568762 tig0026031:+21845 Msa1426470:CDS
AGCAATGGCTAGAAGAGAGA+AGG 0.577331 tig0026031:+20171 Msa1426470:CDS
AGGTCATGCCTGTCAAGCAA+TGG 0.604618 tig0026031:+20156 Msa1426470:exon
ATGAGAAAAGGACACTAGAG+AGG 0.607096 tig0026031:+20057 Msa1426470:five_prime_UTR
GTATGATAGGCTGCAAAGAG+AGG 0.608475 tig0026031:+21298 Msa1426470:CDS
ACTCCTCCAAAAGGTTAGTG+TGG 0.610939 tig0026031:+21916 Msa1426470:CDS
ACTAGAGAGGGAGCTAGCAA+GGG 0.615439 tig0026031:+20070 Msa1426470:five_prime_UTR
TGGTGAAGCTAATGAGTGGA+AGG 0.633476 tig0026031:+20121 Msa1426470:five_prime_UTR
TGAGAAAAGGACACTAGAGA+GGG 0.660251 tig0026031:+20058 Msa1426470:five_prime_UTR
AAAGGAAAATGAGATACAGG+TGG 0.667770 tig0026031:+21145 Msa1426470:CDS
AGAAGCTCTTGGTTGTGATG+TGG 0.668929 tig0026031:-20967 Msa1426470:intergenic
CCAAGTCCATGGAAGTAGAG+CGG 0.682402 tig0026031:+21805 Msa1426470:CDS
GTGGAAGGATGAAAATGACA+AGG 0.684047 tig0026031:+20136 Msa1426470:five_prime_UTR
CAAATGGTGAAGCTAATGAG+TGG 0.695992 tig0026031:+20117 Msa1426470:five_prime_UTR
AGTTCCCCAACAGAAAATGG+TGG 0.700541 tig0026031:+20930 Msa1426470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATTGTAGTATTTA+AGG - tig0026031:20270-20289 Msa1426470:intergenic 10.0%
!! AAATAAAATTGTAGTATTTA+AGG - tig0026031:20270-20289 Msa1426470:intergenic 10.0%
!!! ATTTTATTTTGTTACTTATG+AGG + tig0026031:20281-20300 Msa1426470:intron 15.0%
!! ATATACTGAAATAAATCTTA+AGG + tig0026031:20330-20349 Msa1426470:intron 15.0%
!! TATACTGAAATAAATCTTAA+GGG + tig0026031:20331-20350 Msa1426470:intron 15.0%
!! GAAGTATATTTCATATTAAT+AGG - tig0026031:21072-21091 Msa1426470:intergenic 15.0%
!!! TAATTTTCGTAAATTATTAC+CGG + tig0026031:21531-21550 Msa1426470:intron 15.0%
!!! CATCTATTTCTTTTTTAAAA+TGG - tig0026031:21637-21656 Msa1426470:intergenic 15.0%
!!! ATTTTATTTTGTTACTTATG+AGG + tig0026031:20281-20300 Msa1426470:intron 15.0%
!! ATATACTGAAATAAATCTTA+AGG + tig0026031:20330-20349 Msa1426470:intron 15.0%
!! TATACTGAAATAAATCTTAA+GGG + tig0026031:20331-20350 Msa1426470:intron 15.0%
!! GAAGTATATTTCATATTAAT+AGG - tig0026031:21072-21091 Msa1426470:intergenic 15.0%
!!! TAATTTTCGTAAATTATTAC+CGG + tig0026031:21531-21550 Msa1426470:intron 15.0%
!!! CATCTATTTCTTTTTTAAAA+TGG - tig0026031:21637-21656 Msa1426470:intergenic 15.0%
!!! ATATTGTTATTGTAGTTTTC+AGG - tig0026031:20314-20333 Msa1426470:intergenic 20.0%
!!! ACTACAATTTTCCATATTTA+AGG + tig0026031:20384-20403 Msa1426470:intron 20.0%
!!! GTTGTTTTTATAAGTTATCT+TGG + tig0026031:20502-20521 Msa1426470:intron 20.0%
!! GTTTGTAGAAATTTCATTTA+GGG - tig0026031:20655-20674 Msa1426470:intergenic 20.0%
!!! ATATTGTTATTGTAGTTTTC+AGG - tig0026031:20314-20333 Msa1426470:intergenic 20.0%
!!! ACTACAATTTTCCATATTTA+AGG + tig0026031:20384-20403 Msa1426470:intron 20.0%
!!! GTTGTTTTTATAAGTTATCT+TGG + tig0026031:20502-20521 Msa1426470:intron 20.0%
!! GTTTGTAGAAATTTCATTTA+GGG - tig0026031:20655-20674 Msa1426470:intergenic 20.0%
!! TGATATATTGACAGTTTGTT+TGG + tig0026031:19989-20008 Msa1426470:five_prime_UTR 25.0%
!! GGTTTTGCATATAAATTTTC+AGG + tig0026031:20034-20053 Msa1426470:five_prime_UTR 25.0%
!!! TAAATTTTCAGGATGAGAAA+AGG + tig0026031:20045-20064 Msa1426470:five_prime_UTR 25.0%
!! ATAAACTTCAAAGGTTTTCA+TGG - tig0026031:20230-20249 Msa1426470:intergenic 25.0%
! GGTTTGTAGAAATTTCATTT+AGG - tig0026031:20656-20675 Msa1426470:intergenic 25.0%
!! AATTGATTTAGATGCTTACA+CGG - tig0026031:20797-20816 Msa1426470:intergenic 25.0%
!!! TCAATTTTCAACGTGTTATT+TGG + tig0026031:20811-20830 Msa1426470:intron 25.0%
! TATTTGTCTGTTGAAACAAA+GGG - tig0026031:21004-21023 Msa1426470:intergenic 25.0%
! ATATTTGTCTGTTGAAACAA+AGG - tig0026031:21005-21024 Msa1426470:intergenic 25.0%
! AGCTAAAGATGAAGAAATTA+TGG + tig0026031:21367-21386 Msa1426470:intron 25.0%
! ATGTCATCTATATAAAGTGT+CGG - tig0026031:21435-21454 Msa1426470:intergenic 25.0%
! ATGTAGTTCAGTATGTTATA+TGG - tig0026031:21745-21764 Msa1426470:intergenic 25.0%
! TAATAAGTTCAGATGATAAC+AGG + tig0026031:21877-21896 Msa1426470:CDS 25.0%
!! TGATATATTGACAGTTTGTT+TGG + tig0026031:19989-20008 Msa1426470:five_prime_UTR 25.0%
!! GGTTTTGCATATAAATTTTC+AGG + tig0026031:20034-20053 Msa1426470:five_prime_UTR 25.0%
!!! TAAATTTTCAGGATGAGAAA+AGG + tig0026031:20045-20064 Msa1426470:five_prime_UTR 25.0%
!! ATAAACTTCAAAGGTTTTCA+TGG - tig0026031:20230-20249 Msa1426470:intergenic 25.0%
! GGTTTGTAGAAATTTCATTT+AGG - tig0026031:20656-20675 Msa1426470:intergenic 25.0%
!! AATTGATTTAGATGCTTACA+CGG - tig0026031:20797-20816 Msa1426470:intergenic 25.0%
!!! TCAATTTTCAACGTGTTATT+TGG + tig0026031:20811-20830 Msa1426470:intron 25.0%
! TATTTGTCTGTTGAAACAAA+GGG - tig0026031:21004-21023 Msa1426470:intergenic 25.0%
! ATATTTGTCTGTTGAAACAA+AGG - tig0026031:21005-21024 Msa1426470:intergenic 25.0%
! AGCTAAAGATGAAGAAATTA+TGG + tig0026031:21367-21386 Msa1426470:intron 25.0%
! ATGTCATCTATATAAAGTGT+CGG - tig0026031:21435-21454 Msa1426470:intergenic 25.0%
! ATGTAGTTCAGTATGTTATA+TGG - tig0026031:21745-21764 Msa1426470:intergenic 25.0%
! TAATAAGTTCAGATGATAAC+AGG + tig0026031:21877-21896 Msa1426470:CDS 25.0%
TTTGTTTGGTTGATCTTATG+TGG + tig0026031:20003-20022 Msa1426470:five_prime_UTR 30.0%
TTCACCATTTGCAATTCTAT+TGG - tig0026031:20108-20127 Msa1426470:intergenic 30.0%
CAGGATCATATAAACTTCAA+AGG - tig0026031:20239-20258 Msa1426470:intergenic 30.0%
! AGGGTAAGTTTAAGTTTAAG+AGG + tig0026031:20350-20369 Msa1426470:intron 30.0%
! GGGTAAGTTTAAGTTTAAGA+GGG + tig0026031:20351-20370 Msa1426470:intron 30.0%
TTGATTGGACTCCTTAAATA+TGG - tig0026031:20398-20417 Msa1426470:intergenic 30.0%
TATTATAAGCGCATTAGTGT+TGG - tig0026031:20431-20450 Msa1426470:intergenic 30.0%
CTACATTTGCAAAGACATAA+TGG - tig0026031:20677-20696 Msa1426470:intergenic 30.0%
!! TGTTATTTGGTGTTTACTTC+AGG + tig0026031:20824-20843 Msa1426470:intron 30.0%
AAAAGTGAGACTAAAAACAC+TGG + tig0026031:20854-20873 Msa1426470:CDS 30.0%
TAAAAAACAACACACACTGT+TGG + tig0026031:21024-21043 Msa1426470:intron 30.0%
CAGAAAACATGTTGAAGAAA+AGG + tig0026031:21094-21113 Msa1426470:intron 30.0%
TGAAAAGGAAAATGAGATAC+AGG + tig0026031:21142-21161 Msa1426470:CDS 30.0%
!!! TGTCAGGTTTTTTGTATGAT+AGG + tig0026031:21285-21304 Msa1426470:CDS 30.0%
AAAGAGAGGTCATTAAATTG+AGG + tig0026031:21312-21331 Msa1426470:intron 30.0%
TAAATTATTACCGGTGTCTT+CGG + tig0026031:21540-21559 Msa1426470:intron 30.0%
TTTGTTTGGTTGATCTTATG+TGG + tig0026031:20003-20022 Msa1426470:five_prime_UTR 30.0%
TTCACCATTTGCAATTCTAT+TGG - tig0026031:20108-20127 Msa1426470:intergenic 30.0%
CAGGATCATATAAACTTCAA+AGG - tig0026031:20239-20258 Msa1426470:intergenic 30.0%
! AGGGTAAGTTTAAGTTTAAG+AGG + tig0026031:20350-20369 Msa1426470:intron 30.0%
! GGGTAAGTTTAAGTTTAAGA+GGG + tig0026031:20351-20370 Msa1426470:intron 30.0%
TTGATTGGACTCCTTAAATA+TGG - tig0026031:20398-20417 Msa1426470:intergenic 30.0%
TATTATAAGCGCATTAGTGT+TGG - tig0026031:20431-20450 Msa1426470:intergenic 30.0%
CTACATTTGCAAAGACATAA+TGG - tig0026031:20677-20696 Msa1426470:intergenic 30.0%
!! TGTTATTTGGTGTTTACTTC+AGG + tig0026031:20824-20843 Msa1426470:intron 30.0%
AAAAGTGAGACTAAAAACAC+TGG + tig0026031:20854-20873 Msa1426470:CDS 30.0%
TAAAAAACAACACACACTGT+TGG + tig0026031:21024-21043 Msa1426470:intron 30.0%
CAGAAAACATGTTGAAGAAA+AGG + tig0026031:21094-21113 Msa1426470:intron 30.0%
TGAAAAGGAAAATGAGATAC+AGG + tig0026031:21142-21161 Msa1426470:CDS 30.0%
!!! TGTCAGGTTTTTTGTATGAT+AGG + tig0026031:21285-21304 Msa1426470:CDS 30.0%
AAAGAGAGGTCATTAAATTG+AGG + tig0026031:21312-21331 Msa1426470:intron 30.0%
TAAATTATTACCGGTGTCTT+CGG + tig0026031:21540-21559 Msa1426470:intron 30.0%
TGATCTTATGTGGTAACTTG+TGG + tig0026031:20013-20032 Msa1426470:five_prime_UTR 35.0%
! AGTATTTAAGGCATGAAAGC+AGG - tig0026031:20258-20277 Msa1426470:intergenic 35.0%
AAATGTAGACAGAGATGCAA+AGG + tig0026031:20689-20708 Msa1426470:intron 35.0%
ATAAGTTCCCCAACAGAAAA+TGG + tig0026031:20927-20946 Msa1426470:CDS 35.0%
!!! TGTGATGTGGATCTCTTTTT+TGG - tig0026031:20957-20976 Msa1426470:intergenic 35.0%
AAAGGAAAATGAGATACAGG+TGG + tig0026031:21145-21164 Msa1426470:CDS 35.0%
! AGTCATTTGGTTTCTTGCTT+TGG - tig0026031:21247-21266 Msa1426470:intergenic 35.0%
AGCTTGCAAATTACTGTCTT+TGG - tig0026031:21351-21370 Msa1426470:intergenic 35.0%
ATACATAGCTAGTGAAAGTC+GGG - tig0026031:21410-21429 Msa1426470:intergenic 35.0%
GATACATAGCTAGTGAAAGT+CGG - tig0026031:21411-21430 Msa1426470:intergenic 35.0%
ATTGAATGTAACCATGTGTC+AGG - tig0026031:21506-21525 Msa1426470:intergenic 35.0%
AAATTATTACCGGTGTCTTC+GGG + tig0026031:21541-21560 Msa1426470:intron 35.0%
ATGTTTCACAGTCTACAAGT+AGG + tig0026031:21605-21624 Msa1426470:intron 35.0%
TGAGTTCGTTACTGTAGTTT+AGG + tig0026031:21655-21674 Msa1426470:intron 35.0%
GTTCAGTATGTTATATGGAG+AGG - tig0026031:21740-21759 Msa1426470:intergenic 35.0%
TGATCTTATGTGGTAACTTG+TGG + tig0026031:20013-20032 Msa1426470:five_prime_UTR 35.0%
! AGTATTTAAGGCATGAAAGC+AGG - tig0026031:20258-20277 Msa1426470:intergenic 35.0%
AAATGTAGACAGAGATGCAA+AGG + tig0026031:20689-20708 Msa1426470:intron 35.0%
ATAAGTTCCCCAACAGAAAA+TGG + tig0026031:20927-20946 Msa1426470:CDS 35.0%
!!! TGTGATGTGGATCTCTTTTT+TGG - tig0026031:20957-20976 Msa1426470:intergenic 35.0%
AAAGGAAAATGAGATACAGG+TGG + tig0026031:21145-21164 Msa1426470:CDS 35.0%
! AGTCATTTGGTTTCTTGCTT+TGG - tig0026031:21247-21266 Msa1426470:intergenic 35.0%
AGCTTGCAAATTACTGTCTT+TGG - tig0026031:21351-21370 Msa1426470:intergenic 35.0%
ATACATAGCTAGTGAAAGTC+GGG - tig0026031:21410-21429 Msa1426470:intergenic 35.0%
GATACATAGCTAGTGAAAGT+CGG - tig0026031:21411-21430 Msa1426470:intergenic 35.0%
ATTGAATGTAACCATGTGTC+AGG - tig0026031:21506-21525 Msa1426470:intergenic 35.0%
AAATTATTACCGGTGTCTTC+GGG + tig0026031:21541-21560 Msa1426470:intron 35.0%
ATGTTTCACAGTCTACAAGT+AGG + tig0026031:21605-21624 Msa1426470:intron 35.0%
TGAGTTCGTTACTGTAGTTT+AGG + tig0026031:21655-21674 Msa1426470:intron 35.0%
GTTCAGTATGTTATATGGAG+AGG - tig0026031:21740-21759 Msa1426470:intergenic 35.0%
ATGAGAAAAGGACACTAGAG+AGG + tig0026031:20057-20076 Msa1426470:five_prime_UTR 40.0%
TGAGAAAAGGACACTAGAGA+GGG + tig0026031:20058-20077 Msa1426470:five_prime_UTR 40.0%
GCTAGCAAGGGTAAAAGTTT+CGG + tig0026031:20082-20101 Msa1426470:five_prime_UTR 40.0%
TCGGCCAATAGAATTGCAAA+TGG + tig0026031:20101-20120 Msa1426470:five_prime_UTR 40.0%
CAAATGGTGAAGCTAATGAG+TGG + tig0026031:20117-20136 Msa1426470:five_prime_UTR 40.0%
GTGGAAGGATGAAAATGACA+AGG + tig0026031:20136-20155 Msa1426470:five_prime_UTR 40.0%
AGAAGAGAGAAGGATTATGC+AGG + tig0026031:20181-20200 Msa1426470:CDS 40.0%
TTAAGGAGTCCAATCAAGAG+AGG + tig0026031:20401-20420 Msa1426470:intron 40.0%
TATATCAGAGAGAACAGCCA+AGG + tig0026031:20729-20748 Msa1426470:intron 40.0%
AGTGAGACTAAAAACACTGG+AGG + tig0026031:20857-20876 Msa1426470:CDS 40.0%
AGACTAAAAACACTGGAGGA+AGG + tig0026031:20861-20880 Msa1426470:CDS 40.0%
! TTGGACCACCATTTTCTGTT+GGG - tig0026031:20938-20957 Msa1426470:intergenic 40.0%
! TTTGGACCACCATTTTCTGT+TGG - tig0026031:20939-20958 Msa1426470:intergenic 40.0%
AAAACAACACACACTGTTGG+AGG + tig0026031:21027-21046 Msa1426470:intron 40.0%
AAACAACACACACTGTTGGA+GGG + tig0026031:21028-21047 Msa1426470:intron 40.0%
TGTTGGAGGGAATTCAAAAC+AGG + tig0026031:21041-21060 Msa1426470:intron 40.0%
CCACTATCAGCAACTTTACT+TGG - tig0026031:21122-21141 Msa1426470:intergenic 40.0%
CCAAGTAAAGTTGCTGATAG+TGG + tig0026031:21119-21138 Msa1426470:CDS 40.0%
!! AGTTGCTGATAGTGGTGAAA+AGG + tig0026031:21127-21146 Msa1426470:CDS 40.0%
! CTTCACTTTCAGCATTGAAC+TGG - tig0026031:21190-21209 Msa1426470:intergenic 40.0%
ACACGTGTCAAACATTGACA+CGG - tig0026031:21461-21480 Msa1426470:intergenic 40.0%
GTCAGTATCAGAAACCAACA+CGG + tig0026031:21479-21498 Msa1426470:intron 40.0%
! GGGTTAGTGTCAATGTTGTT+TGG + tig0026031:21561-21580 Msa1426470:intron 40.0%
GAAACAAAGACTCCTCCAAA+AGG + tig0026031:21907-21926 Msa1426470:CDS 40.0%
! TATCAGCCACACTAACCTTT+TGG - tig0026031:21925-21944 Msa1426470:intergenic 40.0%
ATGAGAAAAGGACACTAGAG+AGG + tig0026031:20057-20076 Msa1426470:five_prime_UTR 40.0%
TGAGAAAAGGACACTAGAGA+GGG + tig0026031:20058-20077 Msa1426470:five_prime_UTR 40.0%
GCTAGCAAGGGTAAAAGTTT+CGG + tig0026031:20082-20101 Msa1426470:five_prime_UTR 40.0%
TCGGCCAATAGAATTGCAAA+TGG + tig0026031:20101-20120 Msa1426470:five_prime_UTR 40.0%
CAAATGGTGAAGCTAATGAG+TGG + tig0026031:20117-20136 Msa1426470:five_prime_UTR 40.0%
GTGGAAGGATGAAAATGACA+AGG + tig0026031:20136-20155 Msa1426470:five_prime_UTR 40.0%
AGAAGAGAGAAGGATTATGC+AGG + tig0026031:20181-20200 Msa1426470:CDS 40.0%
TTAAGGAGTCCAATCAAGAG+AGG + tig0026031:20401-20420 Msa1426470:intron 40.0%
TATATCAGAGAGAACAGCCA+AGG + tig0026031:20729-20748 Msa1426470:intron 40.0%
AGTGAGACTAAAAACACTGG+AGG + tig0026031:20857-20876 Msa1426470:CDS 40.0%
AGACTAAAAACACTGGAGGA+AGG + tig0026031:20861-20880 Msa1426470:CDS 40.0%
! TTGGACCACCATTTTCTGTT+GGG - tig0026031:20938-20957 Msa1426470:intergenic 40.0%
! TTTGGACCACCATTTTCTGT+TGG - tig0026031:20939-20958 Msa1426470:intergenic 40.0%
AAAACAACACACACTGTTGG+AGG + tig0026031:21027-21046 Msa1426470:intron 40.0%
AAACAACACACACTGTTGGA+GGG + tig0026031:21028-21047 Msa1426470:intron 40.0%
TGTTGGAGGGAATTCAAAAC+AGG + tig0026031:21041-21060 Msa1426470:intron 40.0%
CCACTATCAGCAACTTTACT+TGG - tig0026031:21122-21141 Msa1426470:intergenic 40.0%
CCAAGTAAAGTTGCTGATAG+TGG + tig0026031:21119-21138 Msa1426470:CDS 40.0%
!! AGTTGCTGATAGTGGTGAAA+AGG + tig0026031:21127-21146 Msa1426470:CDS 40.0%
! CTTCACTTTCAGCATTGAAC+TGG - tig0026031:21190-21209 Msa1426470:intergenic 40.0%
ACACGTGTCAAACATTGACA+CGG - tig0026031:21461-21480 Msa1426470:intergenic 40.0%
GTCAGTATCAGAAACCAACA+CGG + tig0026031:21479-21498 Msa1426470:intron 40.0%
! GGGTTAGTGTCAATGTTGTT+TGG + tig0026031:21561-21580 Msa1426470:intron 40.0%
GAAACAAAGACTCCTCCAAA+AGG + tig0026031:21907-21926 Msa1426470:CDS 40.0%
! TATCAGCCACACTAACCTTT+TGG - tig0026031:21925-21944 Msa1426470:intergenic 40.0%
TGGTGAAGCTAATGAGTGGA+AGG + tig0026031:20121-20140 Msa1426470:five_prime_UTR 45.0%
TCTTCTAGCCATTGCTTGAC+AGG - tig0026031:20167-20186 Msa1426470:intergenic 45.0%
AGCAATGGCTAGAAGAGAGA+AGG + tig0026031:20171-20190 Msa1426470:CDS 45.0%
CTTCATCTGTGATTCTGCCT+TGG - tig0026031:20749-20768 Msa1426470:intergenic 45.0%
CAAGGCAGAATCACAGATGA+AGG + tig0026031:20747-20766 Msa1426470:intron 45.0%
AGTTCCCCAACAGAAAATGG+TGG + tig0026031:20930-20949 Msa1426470:CDS 45.0%
! TGGACCACCATTTTCTGTTG+GGG - tig0026031:20937-20956 Msa1426470:intergenic 45.0%
AGAAGCTCTTGGTTGTGATG+TGG - tig0026031:20970-20989 Msa1426470:intergenic 45.0%
GTATGATAGGCTGCAAAGAG+AGG + tig0026031:21298-21317 Msa1426470:CDS 45.0%
CACGTGTCAAACATTGACAC+GGG - tig0026031:21460-21479 Msa1426470:intergenic 45.0%
TTTCTTCCGCTCTACTTCCA+TGG - tig0026031:21814-21833 Msa1426470:intergenic 45.0%
AGATGCAGCTGCTAGAGAAA+AGG + tig0026031:21842-21861 Msa1426470:CDS 45.0%
ACTCCTCCAAAAGGTTAGTG+TGG + tig0026031:21916-21935 Msa1426470:CDS 45.0%
TGGTGAAGCTAATGAGTGGA+AGG + tig0026031:20121-20140 Msa1426470:five_prime_UTR 45.0%
TCTTCTAGCCATTGCTTGAC+AGG - tig0026031:20167-20186 Msa1426470:intergenic 45.0%
AGCAATGGCTAGAAGAGAGA+AGG + tig0026031:20171-20190 Msa1426470:CDS 45.0%
CTTCATCTGTGATTCTGCCT+TGG - tig0026031:20749-20768 Msa1426470:intergenic 45.0%
CAAGGCAGAATCACAGATGA+AGG + tig0026031:20747-20766 Msa1426470:intron 45.0%
AGTTCCCCAACAGAAAATGG+TGG + tig0026031:20930-20949 Msa1426470:CDS 45.0%
! TGGACCACCATTTTCTGTTG+GGG - tig0026031:20937-20956 Msa1426470:intergenic 45.0%
AGAAGCTCTTGGTTGTGATG+TGG - tig0026031:20970-20989 Msa1426470:intergenic 45.0%
GTATGATAGGCTGCAAAGAG+AGG + tig0026031:21298-21317 Msa1426470:CDS 45.0%
CACGTGTCAAACATTGACAC+GGG - tig0026031:21460-21479 Msa1426470:intergenic 45.0%
TTTCTTCCGCTCTACTTCCA+TGG - tig0026031:21814-21833 Msa1426470:intergenic 45.0%
AGATGCAGCTGCTAGAGAAA+AGG + tig0026031:21842-21861 Msa1426470:CDS 45.0%
ACTCCTCCAAAAGGTTAGTG+TGG + tig0026031:21916-21935 Msa1426470:CDS 45.0%
ACTAGAGAGGGAGCTAGCAA+GGG + tig0026031:20070-20089 Msa1426470:five_prime_UTR 50.0%
AGGTCATGCCTGTCAAGCAA+TGG + tig0026031:20156-20175 Msa1426470:exon 50.0%
GTTGGACAGCCTCTCTTGAT+TGG - tig0026031:20413-20432 Msa1426470:intergenic 50.0%
CAACCAAGAGCTTCTGCGAT+TGG + tig0026031:20975-20994 Msa1426470:CDS 50.0%
CTTCCAATCGCAGAAGCTCT+TGG - tig0026031:20981-21000 Msa1426470:intergenic 50.0%
TCGTCACTGCACGAGTCATT+TGG - tig0026031:21260-21279 Msa1426470:intergenic 50.0%
TGACTCGTGCAGTGACGATT+TGG + tig0026031:21262-21281 Msa1426470:CDS 50.0%
!! TGCAGTGACGATTTGGTGTC+AGG + tig0026031:21269-21288 Msa1426470:CDS 50.0%
TGACACTAACCCGAAGACAC+CGG - tig0026031:21553-21572 Msa1426470:intergenic 50.0%
! TGATGCACTGACCAAGTCCA+TGG + tig0026031:21794-21813 Msa1426470:CDS 50.0%
CCAAGTCCATGGAAGTAGAG+CGG + tig0026031:21805-21824 Msa1426470:CDS 50.0%
TGCAGCTGCTAGAGAAAAGG+AGG + tig0026031:21845-21864 Msa1426470:CDS 50.0%
! CAGCCACACTAACCTTTTGG+AGG - tig0026031:21922-21941 Msa1426470:intergenic 50.0%
ACTAGAGAGGGAGCTAGCAA+GGG + tig0026031:20070-20089 Msa1426470:five_prime_UTR 50.0%
AGGTCATGCCTGTCAAGCAA+TGG + tig0026031:20156-20175 Msa1426470:exon 50.0%
GTTGGACAGCCTCTCTTGAT+TGG - tig0026031:20413-20432 Msa1426470:intergenic 50.0%
CAACCAAGAGCTTCTGCGAT+TGG + tig0026031:20975-20994 Msa1426470:CDS 50.0%
CTTCCAATCGCAGAAGCTCT+TGG - tig0026031:20981-21000 Msa1426470:intergenic 50.0%
TCGTCACTGCACGAGTCATT+TGG - tig0026031:21260-21279 Msa1426470:intergenic 50.0%
TGACTCGTGCAGTGACGATT+TGG + tig0026031:21262-21281 Msa1426470:CDS 50.0%
!! TGCAGTGACGATTTGGTGTC+AGG + tig0026031:21269-21288 Msa1426470:CDS 50.0%
TGACACTAACCCGAAGACAC+CGG - tig0026031:21553-21572 Msa1426470:intergenic 50.0%
! TGATGCACTGACCAAGTCCA+TGG + tig0026031:21794-21813 Msa1426470:CDS 50.0%
CCAAGTCCATGGAAGTAGAG+CGG + tig0026031:21805-21824 Msa1426470:CDS 50.0%
TGCAGCTGCTAGAGAAAAGG+AGG + tig0026031:21845-21864 Msa1426470:CDS 50.0%
! CAGCCACACTAACCTTTTGG+AGG - tig0026031:21922-21941 Msa1426470:intergenic 50.0%
CACTAGAGAGGGAGCTAGCA+AGG + tig0026031:20069-20088 Msa1426470:five_prime_UTR 55.0%
ACCAACACGGTCCTGACACA+TGG + tig0026031:21492-21511 Msa1426470:intron 55.0%
ACCATGTGTCAGGACCGTGT+TGG - tig0026031:21496-21515 Msa1426470:intergenic 55.0%
CCGCTCTACTTCCATGGACT+TGG - tig0026031:21808-21827 Msa1426470:intergenic 55.0%
CACTAGAGAGGGAGCTAGCA+AGG + tig0026031:20069-20088 Msa1426470:five_prime_UTR 55.0%
ACCAACACGGTCCTGACACA+TGG + tig0026031:21492-21511 Msa1426470:intron 55.0%
ACCATGTGTCAGGACCGTGT+TGG - tig0026031:21496-21515 Msa1426470:intergenic 55.0%
CCGCTCTACTTCCATGGACT+TGG - tig0026031:21808-21827 Msa1426470:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0026031 gene 19944 21986 19944 ID=Msa1426470;Name=Msa1426470
tig0026031 mRNA 19944 21986 19944 ID=Msa1426470-mRNA-1;Parent=Msa1426470;Name=Msa1426470-mRNA-1;_AED=0.12;_eAED=0.12;_QI=217|0|0.25|1|1|1|4|0|207
tig0026031 exon 19944 20202 19944 ID=Msa1426470-mRNA-1:exon:4945;Parent=Msa1426470-mRNA-1
tig0026031 exon 20846 21006 20846 ID=Msa1426470-mRNA-1:exon:4946;Parent=Msa1426470-mRNA-1
tig0026031 exon 21097 21319 21097 ID=Msa1426470-mRNA-1:exon:4947;Parent=Msa1426470-mRNA-1
tig0026031 exon 21789 21986 21789 ID=Msa1426470-mRNA-1:exon:4948;Parent=Msa1426470-mRNA-1
tig0026031 five_prime_UTR 19944 20160 19944 ID=Msa1426470-mRNA-1:five_prime_utr;Parent=Msa1426470-mRNA-1
tig0026031 CDS 20161 20202 20161 ID=Msa1426470-mRNA-1:cds;Parent=Msa1426470-mRNA-1
tig0026031 CDS 20846 21006 20846 ID=Msa1426470-mRNA-1:cds;Parent=Msa1426470-mRNA-1
tig0026031 CDS 21097 21319 21097 ID=Msa1426470-mRNA-1:cds;Parent=Msa1426470-mRNA-1
tig0026031 CDS 21789 21986 21789 ID=Msa1426470-mRNA-1:cds;Parent=Msa1426470-mRNA-1
Gene Sequence

>Msa1426470

ATGCCTGTCAAGCAATGGCTAGAAGAGAGAAGGATTATGCAGGAAAAGCTAAAAGTGAGACTAAAAACACTGGAGGAAGGTTTAAAACATTCTTCAAGTTCAAAAGCAGAAAAGTCTAACATCATAAGTTCCCCAACAGAAAATGGTGGTCCAAAAAAGAGATCCACATCACAACCAAGAGCTTCTGCGATTGGAAGCCCTTTAAAACATGTTGAAGAAAAGGATCCAAGTAAAGTTGCTGATAGTGGTGAAAAGGAAAATGAGATACAGGTGGACACAGACATGAATTTAAACCAGTTCAATGCTGAAAGTGAAGAAATCAAAACAATTGTTGATGTGAATGAAGACTTCCAAAGCAAGAAACCAAATGACTCGTGCAGTGACGATTTGGTGTCAGGTTTTTTGTATGATAGGCTGCAAAGAGAGAAAGTTGATGCACTGACCAAGTCCATGGAAGTAGAGCGGAAGAAAATGAAAAGAGATGCAGCTGCTAGAGAAAAGGAGGTTTCAGCAATAATAAGTTCAGATGATAACAGGAAAAACAGAAACAAAGACTCCTCCAAAAGGTTAGTGTGGCTGATACATGCTAACAAGTTTGTTCTGTTTGTCTTAACTATAGCCTAA

Protein sequence

>Msa1426470

MPVKQWLEERRIMQEKLKVRLKTLEEGLKHSSSSKAEKSNIISSPTENGGPKKRSTSQPRASAIGSPLKHVEEKDPSKVADSGEKENEIQVDTDMNLNQFNAESEEIKTIVDVNEDFQSKKPNDSCSDDLVSGFLYDRLQREKVDALTKSMEVERKKMKRDAAAREKEVSAIISSDDNRKNRNKDSSKRLVWLIHANKFVLFVLTIA*