Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1342100 | XP_003625829.2 | 93.939 | 132 | 3 | 1 | 1 | 127 | 1 | 132 | 7.32e-81 | 243 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1342100 | G7KQV5 | 93.939 | 132 | 3 | 1 | 1 | 127 | 1 | 132 | 3.49e-81 | 243 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004840 | Msa1342100 | 0.819032 | 1.436868e-52 | -8.615850e-47 |
Msa0006040 | Msa1342100 | 0.825871 | 3.700022e-54 | -8.615850e-47 |
Msa0007440 | Msa1342100 | 0.802725 | 4.895490e-49 | -8.615850e-47 |
Msa0015090 | Msa1342100 | 0.805901 | 1.066999e-49 | -8.615850e-47 |
Msa0028660 | Msa1342100 | 0.803625 | 3.188717e-49 | -8.615850e-47 |
Msa0029850 | Msa1342100 | 0.814813 | 1.272526e-51 | -8.615850e-47 |
Msa0032470 | Msa1342100 | 0.805082 | 1.584853e-49 | -8.615850e-47 |
Msa0036140 | Msa1342100 | 0.801180 | 1.017039e-48 | -8.615850e-47 |
Msa0037880 | Msa1342100 | 0.819270 | 1.268476e-52 | -8.615850e-47 |
Msa0051450 | Msa1342100 | 0.804990 | 1.656967e-49 | -8.615850e-47 |
Msa0051860 | Msa1342100 | 0.807867 | 4.098483e-50 | -8.615850e-47 |
Msa0054750 | Msa1342100 | 0.829519 | 4.919027e-55 | -8.615850e-47 |
Msa0056030 | Msa1342100 | 0.828699 | 7.776978e-55 | -8.615850e-47 |
Msa0064300 | Msa1342100 | 0.808429 | 3.111320e-50 | -8.615850e-47 |
Msa0071250 | Msa1342100 | 0.801001 | 1.106460e-48 | -8.615850e-47 |
Msa0077180 | Msa1342100 | 0.812833 | 3.474978e-51 | -8.615850e-47 |
Msa0083280 | Msa1342100 | 0.801452 | 8.945319e-49 | -8.615850e-47 |
Msa0086420 | Msa1342100 | 0.829141 | 6.076934e-55 | -8.615850e-47 |
Msa0090100 | Msa1342100 | 0.805458 | 1.322255e-49 | -8.615850e-47 |
Msa0096030 | Msa1342100 | 0.824167 | 9.346085e-54 | -8.615850e-47 |
Msa0098320 | Msa1342100 | 0.810027 | 1.413625e-50 | -8.615850e-47 |
Msa0098340 | Msa1342100 | 0.837320 | 5.572017e-57 | -8.615850e-47 |
Msa0101830 | Msa1342100 | 0.818815 | 1.609671e-52 | -8.615850e-47 |
Msa0608710 | Msa1342100 | 0.834920 | 2.266782e-56 | -8.615850e-47 |
Msa0610130 | Msa1342100 | 0.806029 | 1.003142e-49 | -8.615850e-47 |
Msa0610180 | Msa1342100 | 0.801045 | 1.083641e-48 | -8.615850e-47 |
Msa0621790 | Msa1342100 | 0.812849 | 3.445934e-51 | -8.615850e-47 |
Msa0651270 | Msa1342100 | 0.807637 | 4.586581e-50 | -8.615850e-47 |
Msa0654620 | Msa1342100 | 0.802788 | 4.751011e-49 | -8.615850e-47 |
Msa0661210 | Msa1342100 | 0.811978 | 5.341232e-51 | -8.615850e-47 |
Msa0709160 | Msa1342100 | 0.803887 | 2.812586e-49 | -8.615850e-47 |
Msa0711100 | Msa1342100 | 0.819282 | 1.260367e-52 | -8.615850e-47 |
Msa0721280 | Msa1342100 | 0.807895 | 4.041320e-50 | -8.615850e-47 |
Msa0725450 | Msa1342100 | 0.812515 | 4.077898e-51 | -8.615850e-47 |
Msa0731180 | Msa1342100 | 0.812545 | 4.016941e-51 | -8.615850e-47 |
Msa0750850 | Msa1342100 | 0.821506 | 3.893692e-53 | -8.615850e-47 |
Msa0766090 | Msa1342100 | 0.826050 | 3.355574e-54 | -8.615850e-47 |
Msa0788540 | Msa1342100 | 0.809614 | 1.734342e-50 | -8.615850e-47 |
Msa0795720 | Msa1342100 | 0.809871 | 1.527502e-50 | -8.615850e-47 |
Msa0797970 | Msa1342100 | 0.803317 | 3.692455e-49 | -8.615850e-47 |
Msa0801730 | Msa1342100 | 0.810035 | 1.408128e-50 | -8.615850e-47 |
Msa0801740 | Msa1342100 | 0.800247 | 1.576343e-48 | -8.615850e-47 |
Msa0817460 | Msa1342100 | 0.803716 | 3.052891e-49 | -8.615850e-47 |
Msa0820850 | Msa1342100 | 0.802825 | 4.667791e-49 | -8.615850e-47 |
Msa0827350 | Msa1342100 | -0.820100 | 8.200431e-53 | -8.615850e-47 |
Msa0832150 | Msa1342100 | 0.826784 | 2.243779e-54 | -8.615850e-47 |
Msa0833460 | Msa1342100 | 0.822914 | 1.835415e-53 | -8.615850e-47 |
Msa0135410 | Msa1342100 | 0.815963 | 7.060462e-52 | -8.615850e-47 |
Msa0137570 | Msa1342100 | 0.821404 | 4.110884e-53 | -8.615850e-47 |
Msa0151180 | Msa1342100 | 0.814126 | 1.805499e-51 | -8.615850e-47 |
Msa0155340 | Msa1342100 | 0.804118 | 2.518374e-49 | -8.615850e-47 |
Msa0169820 | Msa1342100 | 0.813109 | 3.023047e-51 | -8.615850e-47 |
Msa0170110 | Msa1342100 | -0.813361 | 2.661334e-51 | -8.615850e-47 |
Msa0178510 | Msa1342100 | 0.800501 | 1.399396e-48 | -8.615850e-47 |
Msa0178860 | Msa1342100 | -0.810147 | 1.332094e-50 | -8.615850e-47 |
Msa0182570 | Msa1342100 | 0.804059 | 2.591159e-49 | -8.615850e-47 |
Msa0189030 | Msa1342100 | 0.808114 | 3.631731e-50 | -8.615850e-47 |
Msa0206010 | Msa1342100 | 0.816341 | 5.814160e-52 | -8.615850e-47 |
Msa0216530 | Msa1342100 | 0.801235 | 9.906754e-49 | -8.615850e-47 |
Msa0217680 | Msa1342100 | 0.842456 | 2.558246e-58 | -8.615850e-47 |
Msa0236420 | Msa1342100 | 0.820551 | 6.462168e-53 | -8.615850e-47 |
Msa1234690 | Msa1342100 | 0.805163 | 1.524303e-49 | -8.615850e-47 |
Msa1234730 | Msa1342100 | 0.801846 | 7.424463e-49 | -8.615850e-47 |
Msa1270660 | Msa1342100 | 0.808742 | 2.666961e-50 | -8.615850e-47 |
Msa1270730 | Msa1342100 | 0.802989 | 4.316778e-49 | -8.615850e-47 |
Msa1276440 | Msa1342100 | 0.813202 | 2.883385e-51 | -8.615850e-47 |
Msa1295930 | Msa1342100 | 0.805775 | 1.134101e-49 | -8.615850e-47 |
Msa1307740 | Msa1342100 | 0.827048 | 1.939767e-54 | -8.615850e-47 |
Msa1315110 | Msa1342100 | 0.807681 | 4.489365e-50 | -8.615850e-47 |
Msa1322200 | Msa1342100 | 0.811391 | 7.168229e-51 | -8.615850e-47 |
Msa1331320 | Msa1342100 | 0.817818 | 2.707103e-52 | -8.615850e-47 |
Msa1335230 | Msa1342100 | 0.802803 | 4.717594e-49 | -8.615850e-47 |
Msa1342100 | Msa1357890 | 0.807371 | 5.221743e-50 | -8.615850e-47 |
Msa1342100 | Msa1359630 | 0.812529 | 4.049689e-51 | -8.615850e-47 |
Msa1342100 | Msa1371240 | 0.801555 | 8.519456e-49 | -8.615850e-47 |
Msa1342100 | Msa1372150 | 0.802914 | 4.475533e-49 | -8.615850e-47 |
Msa1342100 | Msa1377570 | 0.802589 | 5.222541e-49 | -8.615850e-47 |
Msa1342100 | Msa1388860 | 0.830596 | 2.687189e-55 | -8.615850e-47 |
Msa1342100 | Msa1396400 | -0.833129 | 6.366656e-56 | -8.615850e-47 |
Msa1342100 | Msa1398390 | 0.801650 | 8.146547e-49 | -8.615850e-47 |
Msa1342100 | Msa1403340 | 0.837952 | 3.836587e-57 | -8.615850e-47 |
Msa1342100 | Msa1406110 | -0.817000 | 4.137255e-52 | -8.615850e-47 |
Msa1342100 | Msa1412890 | 0.838457 | 2.842931e-57 | -8.615850e-47 |
Msa1342100 | Msa1423820 | 0.814417 | 1.557327e-51 | -8.615850e-47 |
Msa1342100 | Msa1437130 | 0.800944 | 1.136385e-48 | -8.615850e-47 |
Msa1342100 | Msa1437910 | 0.974706 | 1.249325e-138 | -8.615850e-47 |
Msa1342100 | Msa1444740 | 0.832394 | 9.691291e-56 | -8.615850e-47 |
Msa1342100 | Msa1460050 | 0.802225 | 6.207680e-49 | -8.615850e-47 |
Msa1342100 | Msa1462840 | 0.803739 | 3.019912e-49 | -8.615850e-47 |
Msa0376910 | Msa1342100 | 0.815327 | 9.784337e-52 | -8.615850e-47 |
Msa0383800 | Msa1342100 | 0.805265 | 1.451197e-49 | -8.615850e-47 |
Msa0389810 | Msa1342100 | 0.826050 | 3.355943e-54 | -8.615850e-47 |
Msa0394340 | Msa1342100 | 0.840998 | 6.200540e-58 | -8.615850e-47 |
Msa0397270 | Msa1342100 | 0.805074 | 1.591146e-49 | -8.615850e-47 |
Msa0412840 | Msa1342100 | 0.837585 | 4.765780e-57 | -8.615850e-47 |
Msa0433410 | Msa1342100 | -0.820320 | 7.299611e-53 | -8.615850e-47 |
Msa0434180 | Msa1342100 | 0.800799 | 1.216761e-48 | -8.615850e-47 |
Msa0438040 | Msa1342100 | 0.805352 | 1.391583e-49 | -8.615850e-47 |
Msa0442200 | Msa1342100 | 0.818935 | 1.511920e-52 | -8.615850e-47 |
Msa0457510 | Msa1342100 | 0.846899 | 1.625395e-59 | -8.615850e-47 |
Msa0468130 | Msa1342100 | 0.822660 | 2.102853e-53 | -8.615850e-47 |
Msa0471900 | Msa1342100 | 0.803130 | 4.036658e-49 | -8.615850e-47 |
Msa0472960 | Msa1342100 | -0.814601 | 1.417659e-51 | -8.615850e-47 |
Msa0477130 | Msa1342100 | -0.820620 | 6.229570e-53 | -8.615850e-47 |
Msa0982270 | Msa1342100 | 0.823728 | 1.184484e-53 | -8.615850e-47 |
Msa1034150 | Msa1342100 | 0.805029 | 1.625786e-49 | -8.615850e-47 |
Msa1058170 | Msa1342100 | 0.814811 | 1.274164e-51 | -8.615850e-47 |
Msa1071320 | Msa1342100 | 0.804805 | 1.811174e-49 | -8.615850e-47 |
Msa1080270 | Msa1342100 | 0.804961 | 1.679952e-49 | -8.615850e-47 |
Msa1081790 | Msa1342100 | -0.834576 | 2.766887e-56 | -8.615850e-47 |
Msa1087990 | Msa1342100 | 0.808049 | 3.749127e-50 | -8.615850e-47 |
Msa1100480 | Msa1342100 | 0.804187 | 2.436501e-49 | -8.615850e-47 |
Msa1102790 | Msa1342100 | 0.826672 | 2.386052e-54 | -8.615850e-47 |
Msa0249560 | Msa1342100 | 0.802466 | 5.535595e-49 | -8.615850e-47 |
Msa0257500 | Msa1342100 | 0.832916 | 7.192787e-56 | -8.615850e-47 |
Msa0270960 | Msa1342100 | 0.822981 | 1.770780e-53 | -8.615850e-47 |
Msa0272450 | Msa1342100 | 0.809495 | 1.839573e-50 | -8.615850e-47 |
Msa0286670 | Msa1342100 | 0.814492 | 1.499126e-51 | -8.615850e-47 |
Msa0287410 | Msa1342100 | 0.809149 | 2.182768e-50 | -8.615850e-47 |
Msa0295330 | Msa1342100 | 0.806754 | 7.053620e-50 | -8.615850e-47 |
Msa0306210 | Msa1342100 | -0.802264 | 6.093780e-49 | -8.615850e-47 |
Msa0309270 | Msa1342100 | 0.808049 | 3.748702e-50 | -8.615850e-47 |
Msa0326110 | Msa1342100 | 0.818642 | 1.761729e-52 | -8.615850e-47 |
Msa0326520 | Msa1342100 | 0.800722 | 1.261237e-48 | -8.615850e-47 |
Msa0347610 | Msa1342100 | 0.814667 | 1.371071e-51 | -8.615850e-47 |
Msa0358860 | Msa1342100 | 0.821525 | 3.854734e-53 | -8.615850e-47 |
Msa1124540 | Msa1342100 | -0.801088 | 1.062079e-48 | -8.615850e-47 |
Msa1140230 | Msa1342100 | 0.800320 | 1.523257e-48 | -8.615850e-47 |
Msa1166090 | Msa1342100 | -0.837954 | 3.830866e-57 | -8.615850e-47 |
Msa1174870 | Msa1342100 | 0.806303 | 8.784741e-50 | -8.615850e-47 |
Msa1207310 | Msa1342100 | 0.817781 | 2.759026e-52 | -8.615850e-47 |
Msa1208380 | Msa1342100 | 0.809780 | 1.597735e-50 | -8.615850e-47 |
Msa0484780 | Msa1342100 | 0.801238 | 9.892044e-49 | -8.615850e-47 |
Msa0489610 | Msa1342100 | 0.827056 | 1.931168e-54 | -8.615850e-47 |
Msa0579130 | Msa1342100 | 0.806350 | 8.585402e-50 | -8.615850e-47 |
Msa0861130 | Msa1342100 | 0.803395 | 3.557783e-49 | -8.615850e-47 |
Msa0861570 | Msa1342100 | 0.800554 | 1.364616e-48 | -8.615850e-47 |
Msa0869120 | Msa1342100 | 0.810936 | 8.993239e-51 | -8.615850e-47 |
Msa0876360 | Msa1342100 | 0.818594 | 1.806913e-52 | -8.615850e-47 |
Msa0923870 | Msa1342100 | 0.807209 | 5.653710e-50 | -8.615850e-47 |
Msa0946280 | Msa1342100 | -0.807590 | 4.691807e-50 | -8.615850e-47 |
Msa0958920 | Msa1342100 | 0.848076 | 7.716341e-60 | -8.615850e-47 |
Msa0962840 | Msa1342100 | 0.815855 | 7.464400e-52 | -8.615850e-47 |
Msa0978700 | Msa1342100 | 0.800767 | 1.234693e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1342100 | MtrunA17_Chr7g0266361 | 93.939 | 132 | 3 | 1 | 1 | 127 | 1 | 132 | 6.73e-85 | 243 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1342100 | AT3G10120.1 | 28.177 | 181 | 66 | 8 | 1 | 126 | 1 | 172 | 1.99e-12 | 61.2 |
Find 23 sgRNAs with CRISPR-Local
Find 24 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTGTACATCTTGAACTTC+TGG | 0.229795 | tig0005162:-13245 | Msa1342100:intergenic |
CTCACCTTCTTGCGCTCTTT+TGG | 0.237188 | tig0005162:-13212 | Msa1342100:intergenic |
TCTCTTGTTCATGGTGAAAA+TGG | 0.241059 | tig0005162:+13359 | Msa1342100:CDS |
TCAGGTATGCTTTGCAATAC+TGG | 0.263195 | tig0005162:-13437 | None:intergenic |
AATAAACATGGGAAATTGTT+TGG | 0.325749 | tig0005162:+13079 | None:intergenic |
ATCTATTGCTAGATTACTTC+AGG | 0.354532 | tig0005162:-13455 | Msa1342100:intergenic |
TTGCAAGAGATGCTGGATAA+TGG | 0.374576 | tig0005162:+13311 | Msa1342100:CDS |
AAAACCTCTTCAGCTTTGAT+AGG | 0.399855 | tig0005162:-13173 | Msa1342100:intergenic |
GTGAAGATCATGAAAACAAA+TGG | 0.479078 | tig0005162:+13122 | Msa1342100:CDS |
AAGATGCTATCTCTTGTTCA+TGG | 0.483231 | tig0005162:+13350 | Msa1342100:CDS |
AAAAGTGATGATGCCTGTGC+AGG | 0.529059 | tig0005162:+13407 | Msa1342100:CDS |
TACAGAAAAGTAGTGCAGTT+AGG | 0.532146 | tig0005162:+13261 | Msa1342100:CDS |
TACTGGTTTCCACCCTGCAC+AGG | 0.563255 | tig0005162:-13420 | Msa1342100:intergenic |
TGTTCATGGTGAAAATGGAA+TGG | 0.589839 | tig0005162:+13364 | Msa1342100:CDS |
AACACCTATCAAAGCTGAAG+AGG | 0.600750 | tig0005162:+13169 | Msa1342100:CDS |
CAAGAGATGCTGGATAATGG+AGG | 0.604501 | tig0005162:+13314 | Msa1342100:CDS |
CAAAAGAGCGCAAGAAGGTG+AGG | 0.614183 | tig0005162:+13213 | Msa1342100:CDS |
CATGGTGAAAATGGAATGGA+TGG | 0.619170 | tig0005162:+13368 | Msa1342100:CDS |
ATCACCAAAAGAGCGCAAGA+AGG | 0.623997 | tig0005162:+13208 | Msa1342100:CDS |
AAGAGATGCTGGATAATGGA+GGG | 0.645439 | tig0005162:+13315 | Msa1342100:CDS |
AAAGTGATGATGCCTGTGCA+GGG | 0.662931 | tig0005162:+13408 | Msa1342100:CDS |
GGTGCTGCAACAAATTAATG+TGG | 0.691279 | tig0005162:+13100 | Msa1342100:CDS |
GTGATGATGCCTGTGCAGGG+TGG | 0.757120 | tig0005162:+13411 | Msa1342100:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
GTGAAGATCATGAAAACAAA+TGG | + | tig0005162:13122-13141 | Msa1342100:CDS | 30.0% | |
! | AAAACCTCTTCAGCTTTGAT+AGG | - | tig0005162:13176-13195 | Msa1342100:intergenic | 35.0% |
TTCTGTACATCTTGAACTTC+TGG | - | tig0005162:13248-13267 | Msa1342100:intergenic | 35.0% | |
TACAGAAAAGTAGTGCAGTT+AGG | + | tig0005162:13261-13280 | Msa1342100:CDS | 35.0% | |
AAGATGCTATCTCTTGTTCA+TGG | + | tig0005162:13350-13369 | Msa1342100:CDS | 35.0% | |
TCTCTTGTTCATGGTGAAAA+TGG | + | tig0005162:13359-13378 | Msa1342100:CDS | 35.0% | |
TGTTCATGGTGAAAATGGAA+TGG | + | tig0005162:13364-13383 | Msa1342100:CDS | 35.0% | |
! | GGTGCTGCAACAAATTAATG+TGG | + | tig0005162:13100-13119 | Msa1342100:CDS | 40.0% |
AACACCTATCAAAGCTGAAG+AGG | + | tig0005162:13169-13188 | Msa1342100:CDS | 40.0% | |
!!! | TCTTTTGGTGATGATGGAAG+AGG | - | tig0005162:13200-13219 | Msa1342100:intergenic | 40.0% |
GCAAAAATTGCAAGAGATGC+TGG | + | tig0005162:13304-13323 | Msa1342100:CDS | 40.0% | |
TTGCAAGAGATGCTGGATAA+TGG | + | tig0005162:13311-13330 | Msa1342100:CDS | 40.0% | |
!! | AAGAGATGCTGGATAATGGA+GGG | + | tig0005162:13315-13334 | Msa1342100:CDS | 40.0% |
CATGGTGAAAATGGAATGGA+TGG | + | tig0005162:13368-13387 | Msa1342100:CDS | 40.0% | |
TCAGGTATGCTTTGCAATAC+TGG | - | tig0005162:13440-13459 | Msa1342100:intergenic | 40.0% | |
!!! | TTGCGCTCTTTTGGTGATGA+TGG | - | tig0005162:13206-13225 | Msa1342100:intergenic | 45.0% |
! | ATCACCAAAAGAGCGCAAGA+AGG | + | tig0005162:13208-13227 | Msa1342100:CDS | 45.0% |
! | CAAGAGATGCTGGATAATGG+AGG | + | tig0005162:13314-13333 | Msa1342100:CDS | 45.0% |
! | AAAAGTGATGATGCCTGTGC+AGG | + | tig0005162:13407-13426 | Msa1342100:CDS | 45.0% |
! | AAAGTGATGATGCCTGTGCA+GGG | + | tig0005162:13408-13427 | Msa1342100:CDS | 45.0% |
! | CTCACCTTCTTGCGCTCTTT+TGG | - | tig0005162:13215-13234 | Msa1342100:intergenic | 50.0% |
! | CAAAAGAGCGCAAGAAGGTG+AGG | + | tig0005162:13213-13232 | Msa1342100:CDS | 50.0% |
!! | TACTGGTTTCCACCCTGCAC+AGG | - | tig0005162:13423-13442 | Msa1342100:intergenic | 55.0% |
! | GTGATGATGCCTGTGCAGGG+TGG | + | tig0005162:13411-13430 | Msa1342100:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0005162 | gene | 13086 | 13469 | 13086 | ID=Msa1342100;Name=Msa1342100 |
tig0005162 | mRNA | 13086 | 13469 | 13086 | ID=Msa1342100-mRNA-1;Parent=Msa1342100;Name=Msa1342100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|127 |
tig0005162 | exon | 13086 | 13469 | 13086 | ID=Msa1342100-mRNA-1:exon:3459;Parent=Msa1342100-mRNA-1 |
tig0005162 | CDS | 13086 | 13469 | 13086 | ID=Msa1342100-mRNA-1:cds;Parent=Msa1342100-mRNA-1 |
Gene Sequence |
Protein sequence |