AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0323260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323260 MtrunA17_Chr2g0277491 98.799 583 1 1 1 577 1 583 0.0 1176
Msa0323260 MtrunA17_Chr8g0380651 89.825 570 50 2 16 577 20 589 0.0 996
Msa0323260 MtrunA17_Chr5g0434001 40.901 577 317 9 18 577 38 607 3.48e-157 463
Msa0323260 MtrunA17_Chr8g0375501 40.444 586 328 8 7 577 12 591 4.82e-152 449
Msa0323260 MtrunA17_Chr6g0480551 39.286 588 335 8 5 577 8 588 1.95e-147 437
Msa0323260 MtrunA17_Chr8g0342031 32.206 621 340 11 23 577 43 648 3.20e-108 338
Msa0323260 MtrunA17_Chr1g0150181 32.810 637 353 11 6 577 11 637 4.73e-108 337
Msa0323260 MtrunA17_Chr4g0026371 34.655 580 353 8 14 577 20 589 1.41e-106 332
Msa0323260 MtrunA17_Chr3g0136881 32.459 610 341 8 29 577 37 636 4.58e-103 324
Msa0323260 MtrunA17_Chr4g0065301 30.564 638 347 17 23 577 32 656 5.85e-82 270
Msa0323260 MtrunA17_Chr3g0120461 30.189 636 351 18 23 577 36 659 1.12e-70 239
Msa0323260 MtrunA17_Chr5g0448371 34.322 472 283 12 123 577 204 665 2.02e-69 236
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323260 AT1G10950.1 87.895 570 63 1 14 577 20 589 0.0 977
Msa0323260 AT5G37310.1 41.582 594 316 11 6 577 9 593 1.68e-155 458
Msa0323260 AT5G37310.2 41.582 594 316 11 6 577 9 593 1.68e-155 458
Msa0323260 AT2G01970.1 40.522 575 321 8 18 577 24 592 3.53e-153 452
Msa0323260 AT1G14670.1 41.913 575 313 8 18 577 24 592 2.70e-149 442
Msa0323260 AT1G08350.3 36.672 589 347 10 6 577 10 589 8.23e-127 385
Msa0323260 AT1G08350.2 36.672 589 347 10 6 577 10 589 8.23e-127 385
Msa0323260 AT3G13772.1 33.547 623 333 12 21 577 34 641 4.46e-114 353
Msa0323260 AT1G55130.1 33.065 620 340 12 21 577 30 637 5.11e-111 345
Msa0323260 AT1G08350.4 35.675 541 313 10 6 529 10 532 4.86e-106 329
Msa0323260 AT2G24170.1 33.172 618 342 10 21 577 30 637 2.48e-105 331
Msa0323260 AT1G08350.1 34.884 516 311 9 79 577 1 508 3.61e-104 323
Msa0323260 AT5G25100.1 31.511 622 350 10 21 577 34 644 1.99e-101 321
Msa0323260 AT5G10840.1 31.179 619 354 9 21 577 40 648 9.99e-101 319
Msa0323260 AT5G25100.2 31.922 614 342 10 29 577 49 651 1.35e-100 319
Msa0323260 AT5G35160.1 36.298 416 247 9 170 577 225 630 8.74e-69 234
Msa0323260 AT5G35160.2 36.298 416 247 9 170 577 253 658 1.71e-68 234
Msa0323260 AT5G35160.3 36.298 416 247 9 170 577 253 658 1.71e-68 234
Msa0323260 AT5G35160.4 36.298 416 247 9 170 577 253 658 1.71e-68 234
Msa0323260 AT4G12650.1 29.180 634 360 16 23 577 29 652 1.58e-66 229
Msa0323260 AT2G24170.2 29.147 422 229 9 23 383 32 444 1.22e-50 181

Find 190 sgRNAs with CRISPR-Local

Find 461 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCCCTCTTGCACTTCT+TGG 0.145387 2_4:-26934018 Msa0323260:CDS
TTAACACGACATGGATTATT+TGG 0.152845 2_4:+26933964 None:intergenic
TTCCAAACTAGCTTCTATTT+TGG 0.154600 2_4:-26933353 Msa0323260:CDS
ACATGACATATTCTGTTAAA+TGG 0.187534 2_4:-26935267 Msa0323260:CDS
TGGTGGTTGTCTTTGTTATT+TGG 0.201206 2_4:-26934050 Msa0323260:CDS
GCTCTCACGTCAGTCATTTC+TGG 0.203783 2_4:-26934344 Msa0323260:CDS
TTCCTGCTTCCAAAGGTTTC+GGG 0.207653 2_4:+26935299 None:intergenic
CTAGAAACTTTATCTCAATT+TGG 0.208681 2_4:+26936931 None:intergenic
ATGTATTCTTTCTCGATAAT+AGG 0.214701 2_4:-26932990 Msa0323260:three_prime_UTR
CTTCCTGCTTCCAAAGGTTT+CGG 0.218082 2_4:+26935298 None:intergenic
CCATTCCTGTGCTTTGGAAT+TGG 0.234007 2_4:-26934135 Msa0323260:CDS
TTGTTGACCCAAAGGGTAAC+TGG 0.277984 2_4:+26937086 None:intergenic
CAAATTGAGATAAAGTTTCT+AGG 0.287579 2_4:-26936930 Msa0323260:intron
TCTGGTTTGTGTAGATTCAT+TGG 0.293456 2_4:-26935079 Msa0323260:intron
GTCATCTTGTTAGCTATTGT+TGG 0.295103 2_4:-26934638 Msa0323260:CDS
GGGGACCAAGCAATGTTTAT+AGG 0.303717 2_4:-26933041 Msa0323260:three_prime_UTR
ATGCAATTGAAAATAATTAC+TGG 0.315080 2_4:-26936757 Msa0323260:CDS
GGTGGTTGTCTTTGTTATTT+GGG 0.315967 2_4:-26934049 Msa0323260:CDS
ATTTCTCTTGTCTGTTTGTA+AGG 0.316494 2_4:-26932617 Msa0323260:three_prime_UTR
TTTGGAAGCAGGAAGATCTT+TGG 0.319931 2_4:-26935290 Msa0323260:CDS
TGTATTCTTTCTCGATAATA+GGG 0.320740 2_4:-26932989 Msa0323260:three_prime_UTR
ACACCGGTTTGATGTATATC+TGG 0.332461 2_4:-26935221 Msa0323260:CDS
ATCCAAAATAGAAGCTAGTT+TGG 0.342162 2_4:+26933351 None:intergenic
GCACAGTTGTTGGAAGAAAC+TGG 0.344242 2_4:-26933996 Msa0323260:CDS
TTCATGTTTAAGGGTATGTT+GGG 0.347802 2_4:-26935522 Msa0323260:intron
AAGTCCTCTTTCGCTCGTTT+TGG 0.348793 2_4:-26938718 Msa0323260:five_prime_UTR
TACAATAGATAAAGCGCGTT+TGG 0.361445 2_4:+26932790 None:intergenic
GCTCTTCTTTCAGCTGTTGT+TGG 0.362045 2_4:-26934695 Msa0323260:CDS
AGCAAAATATCAGACTCTTA+TGG 0.364219 2_4:-26932874 Msa0323260:three_prime_UTR
TTTCTTTCAGCTGCATCAAC+AGG 0.365235 2_4:-26933437 Msa0323260:CDS
CTATCCATTCTTTGAGCATC+AGG 0.369958 2_4:-26935197 Msa0323260:intron
CAACAGGTGTACTATGTCTA+TGG 0.372599 2_4:-26933569 Msa0323260:intron
GCACTTCTTGGCACAGTTGT+TGG 0.373505 2_4:-26934006 Msa0323260:CDS
ATGATGGTCATATTCCTAAC+TGG 0.377894 2_4:-26935035 Msa0323260:CDS
TGGTAATACTGCTCACAAAT+GGG 0.381202 2_4:-26936997 Msa0323260:CDS
CAGACATCAGTTCGTCAATC+TGG 0.381575 2_4:+26932817 None:intergenic
CTGGTAATACTGCTCACAAA+TGG 0.386160 2_4:-26936998 Msa0323260:CDS
CGCAATATCAAGTGTGACTA+AGG 0.386852 2_4:-26933088 Msa0323260:exon
TGCTCGGGAAGATGATGATT+TGG 0.389790 2_4:-26934961 Msa0323260:CDS
ACAATAGATAAAGCGCGTTT+GGG 0.394877 2_4:+26932791 None:intergenic
ATTCATGTTTAAGGGTATGT+TGG 0.395565 2_4:-26935523 Msa0323260:intron
CTTTCAGCTGTTGTTGGTAC+GGG 0.395892 2_4:-26934689 Msa0323260:CDS
AATCTGTGTTGTTGCCTGCT+TGG 0.399605 2_4:-26932572 None:intergenic
TTACTGGTTTGAATTCTTCA+TGG 0.405452 2_4:-26936741 Msa0323260:CDS
TTACCAGGTGGACGGCAAAA+TGG 0.406461 2_4:+26937014 None:intergenic
CCACTATCACTGTTCTTGTC+AGG 0.413713 2_4:+26935490 None:intergenic
GCTCACAAATGGGGCGGTCT+AGG 0.414878 2_4:-26936987 Msa0323260:CDS
ATGGGTGGACTGCTTCCCTT+TGG 0.418129 2_4:-26933880 Msa0323260:CDS
CAGATGACCCAGTTACCCTT+TGG 0.419210 2_4:-26937094 Msa0323260:CDS
GTCATTTCTGGTTATGTAAG+TGG 0.420638 2_4:-26934332 Msa0323260:CDS
TGTCTATGGCTTCATGCTAC+TGG 0.424731 2_4:-26933555 Msa0323260:CDS
GAAACCAAAACGAGCGAAAG+AGG 0.429843 2_4:+26938714 None:intergenic
CAAAGGGTAACTGGGTCATC+TGG 0.434940 2_4:+26937095 None:intergenic
GGGACCAAGCAATGTTTATA+GGG 0.438648 2_4:-26933040 Msa0323260:three_prime_UTR
GAGAGAGTCTCAATTCTTCA+AGG 0.439928 2_4:-26938743 Msa0323260:five_prime_UTR
TCATGATGACCCGAAACCTT+TGG 0.440658 2_4:-26935308 Msa0323260:CDS
TCTTTCAGCTGTTGTTGGTA+CGG 0.442889 2_4:-26934690 Msa0323260:CDS
TCATTTCTGGTTATGTAAGT+GGG 0.443328 2_4:-26934331 Msa0323260:CDS
TGTTTATAGGGTAGTATGAC+GGG 0.449024 2_4:-26933028 Msa0323260:three_prime_UTR
TCATCTTGTTAGCTATTGTT+GGG 0.449262 2_4:-26934637 Msa0323260:CDS
AGATGACCCAGTTACCCTTT+GGG 0.452042 2_4:-26937093 Msa0323260:CDS
AGGCCGGAGAGAGGAGGAGA+AGG 0.453628 2_4:+26938631 None:intergenic
TACCACTTCTTCTCAGGAAT+GGG 0.459819 2_4:+26933928 None:intergenic
CAATTCCAAAGCACAGGAAT+GGG 0.462340 2_4:+26934136 None:intergenic
CTTCAAATGTGCAGGAGCTG+TGG 0.465103 2_4:-26933149 Msa0323260:intron
TCTCTAGCAGCAATCCCCTT+TGG 0.469923 2_4:-26934078 Msa0323260:CDS
CCCTCTGTAGTTTCTCTGAT+GGG 0.471861 2_4:-26933898 Msa0323260:CDS
GCAGGAGCTGTGGGTCATCT+TGG 0.473464 2_4:-26933139 Msa0323260:intron
GTGAGGTACCACTTCTTCTC+AGG 0.473501 2_4:+26933922 None:intergenic
ACTTCCTCCACATACCTTCG+TGG 0.475365 2_4:-26932714 Msa0323260:three_prime_UTR
GACCCGAAACCTTTGGAAGC+AGG 0.477158 2_4:-26935301 Msa0323260:CDS
TCATAGACACCAATCCAGTT+AGG 0.479698 2_4:+26935021 None:intergenic
CCTGACAAGAACAGTGATAG+TGG 0.479831 2_4:-26935490 Msa0323260:CDS
CTCAGGAATGGGACGAGGAA+TGG 0.480945 2_4:+26933939 None:intergenic
GGCAAAGGTTAAACAGTTCA+AGG 0.487355 2_4:-26936780 Msa0323260:CDS
GGGGATGTACTCACGTAATG+GGG 0.490455 2_4:-26934309 Msa0323260:CDS
TAAATGCTGAGAACTACAAT+TGG 0.491042 2_4:-26933472 Msa0323260:CDS
CAAAGCTTTCAATTACAGCC+AGG 0.492077 2_4:+26932946 None:intergenic
GATTAAACCACGAAGGTATG+TGG 0.494149 2_4:+26932707 None:intergenic
GGCGGTCTAGGTGAGGTCCT+TGG 0.495626 2_4:-26936975 Msa0323260:CDS
GCAAGGATAAGAAGCCAAGC+AGG 0.495954 2_4:+26932558 None:intergenic
ATGACTATGCAAAGTATGCT+CGG 0.497038 2_4:-26934977 Msa0323260:CDS
AAAGCTTTGATTTAGAATGC+AGG 0.502555 2_4:-26932932 Msa0323260:three_prime_UTR
AGAGACGTCAGTGAAGAATC+TGG 0.503541 2_4:-26934764 Msa0323260:CDS
AAGTGATGCTGTAAGGATCA+TGG 0.504571 2_4:+26934161 None:intergenic
CATTTGTGAGCAGTATTACC+AGG 0.504871 2_4:+26936999 None:intergenic
TACTGGTTTGAATTCTTCAT+GGG 0.509222 2_4:-26936740 Msa0323260:intron
ACCTACTTTGTTGACCCAAA+GGG 0.510739 2_4:+26937079 None:intergenic
ATCACCTGATGCTCAAAGAA+TGG 0.511088 2_4:+26935193 None:intergenic
CCAATTCCAAAGCACAGGAA+TGG 0.511274 2_4:+26934135 None:intergenic
TGAATCCAATTCCAAAGCAC+AGG 0.511325 2_4:+26934130 None:intergenic
ACCCTCTGTAGTTTCTCTGA+TGG 0.513978 2_4:-26933899 Msa0323260:CDS
AGATGATGATTTGGAAACTC+TGG 0.515952 2_4:-26934952 Msa0323260:intron
TTCAAATGTGCAGGAGCTGT+GGG 0.516398 2_4:-26933148 Msa0323260:intron
CCGGAGAGAGGAGGAGAAGG+AGG 0.516747 2_4:+26938634 None:intergenic
GTTTCTTGAGGATTATTGTA+CGG 0.519218 2_4:+26937056 None:intergenic
ACAACCACCATTGTACCAAA+GGG 0.520818 2_4:+26934063 None:intergenic
CTCAATGAATATGCTGCCAA+AGG 0.521836 2_4:+26933864 None:intergenic
TACTTCCTTCTGGAATTACA+AGG 0.524010 2_4:-26933827 Msa0323260:intron
ACTACCCTATAAACATTGCT+TGG 0.525281 2_4:+26933036 None:intergenic
CTTTATCTATTGTACGTAGA+GGG 0.527548 2_4:-26932781 Msa0323260:three_prime_UTR
GGTCTAGGTGAGGTCCTTGG+TGG 0.529226 2_4:-26936972 Msa0323260:CDS
AAGCGAAGGCCGGAGAGAGG+AGG 0.529710 2_4:+26938625 None:intergenic
ATGGGAAAAGTGATGCTGTA+AGG 0.531501 2_4:+26934154 None:intergenic
CGGAAGCGAAGGCCGGAGAG+AGG 0.533115 2_4:+26938622 None:intergenic
GAGAGAGGAGGAGAAGGAGG+AGG 0.533714 2_4:+26938637 None:intergenic
TAATAATTATATGTTTCTTG+AGG 0.534391 2_4:+26937044 None:intergenic
TATGTGAAGACAAAGATGTC+AGG 0.536512 2_4:-26933380 Msa0323260:CDS
AGCAATCCCCTTTGGTACAA+TGG 0.537203 2_4:-26934070 Msa0323260:CDS
TCTGACTCGGAAGCGAAGGC+CGG 0.537290 2_4:+26938615 None:intergenic
ACCCTTTGGGTCAACAAAGT+AGG 0.537437 2_4:-26937080 Msa0323260:CDS
CGCTTCCGAGTCAGATCACA+AGG 0.538777 2_4:-26938607 Msa0323260:intron
GTACCACTTCTTCTCAGGAA+TGG 0.539757 2_4:+26933927 None:intergenic
AAAGATCTTCCTGCTTCCAA+AGG 0.543050 2_4:+26935292 None:intergenic
CAGGTGGACGGCAAAATGGC+AGG 0.544775 2_4:+26937018 None:intergenic
TGACTATGCAAAGTATGCTC+GGG 0.544864 2_4:-26934976 Msa0323260:CDS
AAGCTTTGATTTAGAATGCA+GGG 0.546525 2_4:-26932931 Msa0323260:three_prime_UTR
TTTGAATCTTGACGAGGCAA+AGG 0.547575 2_4:-26936795 Msa0323260:CDS
AGTCCAGATATACATCAAAC+CGG 0.549224 2_4:+26935218 None:intergenic
TGTTAAGTACAATACAGATC+AGG 0.549850 2_4:-26935434 Msa0323260:intron
TTCTTCTCAGGAATGGGACG+AGG 0.550039 2_4:+26933934 None:intergenic
CCTCCTTCTCCTCCTCTCTC+CGG 0.551038 2_4:-26938634 Msa0323260:CDS
GTTCGAATTTGTTTGTGAGG+AGG 0.551162 2_4:-26933117 Msa0323260:CDS
ACAGTATGTGTGACAATTGT+GGG 0.551779 2_4:-26933509 Msa0323260:CDS
AAAGCTTTCAATTACAGCCA+GGG 0.556254 2_4:+26932947 None:intergenic
ACGTCAGTGAAGAATCTGGC+TGG 0.556808 2_4:-26934760 Msa0323260:CDS
TCAATGAATATGCTGCCAAA+GGG 0.558339 2_4:+26933865 None:intergenic
GTGATCTGACTCGGAAGCGA+AGG 0.559770 2_4:+26938611 None:intergenic
AGATGAAGCCTCTGGTCATG+TGG 0.560859 2_4:-26933062 Msa0323260:three_prime_UTR
TTGCCTCGTCAAGATTCAAA+CGG 0.562495 2_4:+26936798 None:intergenic
TGTTGACCCAAAGGGTAACT+GGG 0.563185 2_4:+26937087 None:intergenic
GTGTCTAAAAGTGACATTAG+TGG 0.564033 2_4:+26935240 None:intergenic
TTGGTTCGAATTTGTTTGTG+AGG 0.564574 2_4:-26933120 Msa0323260:CDS
GGGATGTACTCACGTAATGG+GGG 0.566435 2_4:-26934308 Msa0323260:intron
GACAACCACCATTGTACCAA+AGG 0.567774 2_4:+26934062 None:intergenic
TCTTTCCAGGGAATGTGGAA+AGG 0.569777 2_4:-26936832 Msa0323260:intron
CTGAGAACTACAATTGGCAA+TGG 0.571157 2_4:-26933466 Msa0323260:CDS
TAAGGCTTAGATGAAGCCTC+TGG 0.573199 2_4:-26933070 Msa0323260:three_prime_UTR
GATGAAGCCTCTGGTCATGT+GGG 0.574281 2_4:-26933061 Msa0323260:three_prime_UTR
TACAGTATGTGTGACAATTG+TGG 0.574298 2_4:-26933510 Msa0323260:CDS
GTCCCATTCCTGAGAAGAAG+TGG 0.575509 2_4:-26933930 Msa0323260:CDS
GGTCATATTCCTAACTGGAT+TGG 0.577037 2_4:-26935030 Msa0323260:CDS
ATGTTTATAGGGTAGTATGA+CGG 0.578314 2_4:-26933029 Msa0323260:three_prime_UTR
GACCTACTTTGTTGACCCAA+AGG 0.580015 2_4:+26937078 None:intergenic
TCTGAAGAACATCGTGATGG+TGG 0.588131 2_4:+26938668 None:intergenic
ACGTAGAGGGGATGAAGTCT+CGG 0.590267 2_4:-26932768 Msa0323260:three_prime_UTR
ATTTCTGGTTATGTAAGTGG+GGG 0.596930 2_4:-26934329 Msa0323260:CDS
CTTAGTCACACTTGATATTG+CGG 0.601382 2_4:+26933089 None:intergenic
AACAATGAATGTTGTGACAA+TGG 0.601553 2_4:+26934373 None:intergenic
CATTTCTGGTTATGTAAGTG+GGG 0.604552 2_4:-26934330 Msa0323260:CDS
TCTGTAGTTTCTCTGATGGG+TGG 0.605774 2_4:-26933895 Msa0323260:CDS
TTTCTGGTTATGTAAGTGGG+GGG 0.606723 2_4:-26934328 Msa0323260:CDS
CTTGGTCCCCACATGACCAG+AGG 0.607120 2_4:+26933054 None:intergenic
ACTGACCTTGTGATCTGACT+CGG 0.610527 2_4:+26938602 None:intergenic
TGATGTTCTTGTGTGTGTAA+AGG 0.612278 2_4:+26935458 None:intergenic
GGAATGGTCTTAACACGACA+TGG 0.612418 2_4:+26933955 None:intergenic
ATGTTGTGACAATGGCTCCT+CGG 0.613655 2_4:+26934381 None:intergenic
GGTAATACTGCTCACAAATG+GGG 0.629300 2_4:-26936996 Msa0323260:CDS
TTTATCTATTGTACGTAGAG+GGG 0.631571 2_4:-26932780 Msa0323260:three_prime_UTR
GGGTAACTGGGTCATCTGGT+TGG 0.632836 2_4:+26937099 None:intergenic
TCATGTTTAAGGGTATGTTG+GGG 0.633391 2_4:-26935521 Msa0323260:intron
AATCCCCTTTGGTACAATGG+TGG 0.635651 2_4:-26934067 Msa0323260:CDS
ACTCACCTTGTAATTCCAGA+AGG 0.636618 2_4:+26933822 None:intergenic
TTGCCGTTTGAATCTTGACG+AGG 0.647649 2_4:-26936801 Msa0323260:CDS
ACTGTGCCAAGAAGTGCAAG+AGG 0.648561 2_4:+26934012 None:intergenic
CTTGGACTGGGAATTCTCTG+TGG 0.651131 2_4:-26933311 Msa0323260:intron
GAGAAACTACAGAGGGTGTG+AGG 0.651955 2_4:+26933905 None:intergenic
ATGAAGCCTCTGGTCATGTG+GGG 0.652097 2_4:-26933060 Msa0323260:three_prime_UTR
GCTTTATCTATTGTACGTAG+AGG 0.655749 2_4:-26932782 Msa0323260:three_prime_UTR
CAAATGGGGCGGTCTAGGTG+AGG 0.657435 2_4:-26936982 Msa0323260:CDS
CAATAAGTTCGTTGCCACCA+AGG 0.658441 2_4:+26936958 None:intergenic
AAATTTAGATTAAACCACGA+AGG 0.658768 2_4:+26932700 None:intergenic
GAGCAGTATTACCAGGTGGA+CGG 0.658884 2_4:+26937006 None:intergenic
TCTGGCTGGAAACTTGTGCA+TGG 0.660877 2_4:-26934746 Msa0323260:CDS
CTGTGCCAAGAAGTGCAAGA+GGG 0.661110 2_4:+26934013 None:intergenic
GAATCTGAAGAACATCGTGA+TGG 0.661843 2_4:+26938665 None:intergenic
TGTGGAGGAAGTACTCAGAA+CGG 0.668103 2_4:+26932725 None:intergenic
AGATCCATAAAATATAGCCA+CGG 0.678616 2_4:+26934098 None:intergenic
TAAACCACGAAGGTATGTGG+AGG 0.680873 2_4:+26932710 None:intergenic
CCCATCAGAGAAACTACAGA+GGG 0.680889 2_4:+26933898 None:intergenic
GTTTATAGGGTAGTATGACG+GGG 0.681283 2_4:-26933027 Msa0323260:three_prime_UTR
AATACTGCTCACAAATGGGG+CGG 0.688456 2_4:-26936993 Msa0323260:CDS
CAACCACCATTGTACCAAAG+GGG 0.709089 2_4:+26934064 None:intergenic
AGAAGAGCCAAACTGCGAGG+AGG 0.711367 2_4:+26934710 None:intergenic
GAAAGAAGAGCCAAACTGCG+AGG 0.712124 2_4:+26934707 None:intergenic
GTTGTTGGAAGAAACTGGAG+CGG 0.719624 2_4:-26933991 Msa0323260:CDS
CAGTATGTGTGACAATTGTG+GGG 0.720490 2_4:-26933508 Msa0323260:CDS
TTGTGAGCAGTATTACCAGG+TGG 0.723303 2_4:+26937002 None:intergenic
TGGATTCATCTTAAACACCG+TGG 0.734062 2_4:-26934115 Msa0323260:CDS
ACCCATCAGAGAAACTACAG+AGG 0.767119 2_4:+26933897 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTACTATTAAAAATTAT+TGG + chr2_4:26933135-26933154 None:intergenic 10.0%
!! ATCAAACAAATTTAAATATA+CGG - chr2_4:26933333-26933352 Msa0323260:CDS 10.0%
!!! TTACATTTTATAAACAAAAA+AGG + chr2_4:26933361-26933380 None:intergenic 10.0%
!! ATTCTAGATATTAATTTAAT+GGG + chr2_4:26934093-26934112 None:intergenic 10.0%
!!! GAATTTTTTTTTATTCTTAT+TGG - chr2_4:26937604-26937623 Msa0323260:intron 10.0%
!!! TTTTTTACTAAAAATCCATT+TGG + chr2_4:26933239-26933258 None:intergenic 15.0%
!! CATTCTAGATATTAATTTAA+TGG + chr2_4:26934094-26934113 None:intergenic 15.0%
!! TAATAATTATATGTTTCTTG+AGG + chr2_4:26934337-26934356 None:intergenic 15.0%
!! TTTAAACAAATAATCTTCAT+TGG + chr2_4:26935502-26935521 None:intergenic 15.0%
!!! TATTTTTAACTCTTTTATGA+TGG - chr2_4:26936327-26936346 Msa0323260:intron 15.0%
!! AAATACTTCAAAAAATAAAG+TGG + chr2_4:26936466-26936485 None:intergenic 15.0%
!! ATTTGCATTATAATGAATTA+AGG + chr2_4:26936961-26936980 None:intergenic 15.0%
!!! ACATATGAACTTTTATTATA+AGG + chr2_4:26938180-26938199 None:intergenic 15.0%
!! ACTATTAAAAATTATTGGAC+TGG + chr2_4:26933130-26933149 None:intergenic 20.0%
!! AAACAATGAATATCCTTTAT+TGG + chr2_4:26933461-26933480 None:intergenic 20.0%
!!! AAAGGATATTCATTGTTTTT+TGG - chr2_4:26933463-26933482 Msa0323260:CDS 20.0%
!! GATAAGCTAAAACTAAATAA+AGG + chr2_4:26933491-26933510 None:intergenic 20.0%
!! ATTGATAAGTTCATATGAAA+GGG + chr2_4:26933740-26933759 None:intergenic 20.0%
!!! GTTTTTTTTTTTTCTTTCCA+GGG - chr2_4:26934534-26934553 Msa0323260:intron 20.0%
!! ATGCAATTGAAAATAATTAC+TGG - chr2_4:26934621-26934640 Msa0323260:intron 20.0%
!!! GGATAATCAAGAAATTTTAA+AGG - chr2_4:26934717-26934736 Msa0323260:CDS 20.0%
!!! GTCTTTTATTAAATAAAGAC+TGG - chr2_4:26934763-26934782 Msa0323260:CDS 20.0%
!! TTCTTTCAAAAAAAATCCAA+CGG + chr2_4:26934856-26934875 None:intergenic 20.0%
!! TAATATCAATTAGAATGCTT+AGG + chr2_4:26935370-26935389 None:intergenic 20.0%
!!! CAATAATTTGTTTTTGGTAT+TGG - chr2_4:26935605-26935624 Msa0323260:intron 20.0%
!!! TGTTCTTTTATTCATGTTTA+AGG - chr2_4:26935846-26935865 Msa0323260:intron 20.0%
!!! GTTCTTTTATTCATGTTTAA+GGG - chr2_4:26935847-26935866 Msa0323260:intron 20.0%
!! ACTTCAAGCTAAAAAAATAT+GGG + chr2_4:26936223-26936242 None:intergenic 20.0%
!! ATATATATATATTCCATTCC+TGG - chr2_4:26936535-26936554 Msa0323260:intron 20.0%
!!! GTAACATTTTAGTTAGTTTA+AGG + chr2_4:26936793-26936812 None:intergenic 20.0%
!!! TAACTATGCTTATCTTTTTT+AGG - chr2_4:26937177-26937196 Msa0323260:intron 20.0%
!!! TATCTTTTTTAGGTAAAAGT+TGG - chr2_4:26937187-26937206 Msa0323260:intron 20.0%
!!! AGTTTAATTTTACTCTTTCT+GGG - chr2_4:26938099-26938118 Msa0323260:intron 20.0%
!!! AAGTCCTTTTATTACAAAAT+AGG - chr2_4:26938536-26938555 Msa0323260:intron 20.0%
!! ATCCATCTTTCAATTTTCTT+AGG - chr2_4:26932840-26932859 Msa0323260:three_prime_UTR 25.0%
!! TCCATCTTTCAATTTTCTTA+GGG - chr2_4:26932841-26932860 Msa0323260:three_prime_UTR 25.0%
!!! AAATGAACTTTTTTCGTTGT+AGG - chr2_4:26933385-26933404 Msa0323260:CDS 25.0%
!! TTTTCAACCAAACTTGTAAA+TGG + chr2_4:26933515-26933534 None:intergenic 25.0%
! TGATAAGAACAAATAGATGA+TGG + chr2_4:26933583-26933602 None:intergenic 25.0%
! TATCATTACAATTGTTGAAG+TGG - chr2_4:26933598-26933617 Msa0323260:intron 25.0%
! CATTGATAAGTTCATATGAA+AGG + chr2_4:26933741-26933760 None:intergenic 25.0%
! TCATATGAACTTATCAATGT+TGG - chr2_4:26933742-26933761 Msa0323260:intron 25.0%
! AAAAAAATAAGGACAACACT+TGG - chr2_4:26933840-26933859 Msa0323260:CDS 25.0%
! AAAAAATAAGGACAACACTT+GGG - chr2_4:26933841-26933860 Msa0323260:CDS 25.0%
! TTAAAATAAAGAGTGACATG+TGG + chr2_4:26933914-26933933 None:intergenic 25.0%
!!! GTGTACCAGTAATTATTTTT+GGG + chr2_4:26934050-26934069 None:intergenic 25.0%
!! TGTGTACCAGTAATTATTTT+TGG + chr2_4:26934051-26934070 None:intergenic 25.0%
! TTCTAATAAGCTCAAGAAAA+GGG + chr2_4:26934169-26934188 None:intergenic 25.0%
! ATTCTAATAAGCTCAAGAAA+AGG + chr2_4:26934170-26934189 None:intergenic 25.0%
! CTAGAAACTTTATCTCAATT+TGG + chr2_4:26934450-26934469 None:intergenic 25.0%
! CAAATTGAGATAAAGTTTCT+AGG - chr2_4:26934448-26934467 Msa0323260:intron 25.0%
! AGGTCTTAAAGGAAATAAAT+GGG + chr2_4:26934490-26934509 None:intergenic 25.0%
! TAGGTCTTAAAGGAAATAAA+TGG + chr2_4:26934491-26934510 None:intergenic 25.0%
!!! CGTTTTTTTTTTTTCTTTCC+AGG - chr2_4:26934533-26934552 Msa0323260:intron 25.0%
! TACATGTGTATAAGCTTATA+AGG - chr2_4:26934941-26934960 Msa0323260:intron 25.0%
! TCTCAATTAAAATAGGTTCA+TGG + chr2_4:26934985-26935004 None:intergenic 25.0%
! AAGAGCTTCTCAATTAAAAT+AGG + chr2_4:26934992-26935011 None:intergenic 25.0%
! AAACATCAAATGAAACAAAG+TGG - chr2_4:26935129-26935148 Msa0323260:intron 25.0%
! ATGTTAAAAAACATGATCCA+TGG + chr2_4:26935450-26935469 None:intergenic 25.0%
! TAAAACACAGTCATATCAAA+TGG + chr2_4:26935807-26935826 None:intergenic 25.0%
! ACATGACATATTCTGTTAAA+TGG - chr2_4:26936111-26936130 Msa0323260:intron 25.0%
! CACTTCAAGCTAAAAAAATA+TGG + chr2_4:26936224-26936243 None:intergenic 25.0%
!!! CATATTTTTTTAGCTTGAAG+TGG - chr2_4:26936222-26936241 Msa0323260:intron 25.0%
!! TGGTCAACACAAATATTTTT+AGG - chr2_4:26936589-26936608 Msa0323260:intron 25.0%
! ACAAACAAAATACATTCAAC+AGG + chr2_4:26936930-26936949 None:intergenic 25.0%
! ATTGATCTCATTTGTATTTC+TGG - chr2_4:26937104-26937123 Msa0323260:CDS 25.0%
!!! ATTTGTATTTCTGGTTTGTT+TGG - chr2_4:26937113-26937132 Msa0323260:intron 25.0%
!! ATTTTGTATTTACTTCCTTC+TGG - chr2_4:26937541-26937560 Msa0323260:intron 25.0%
! AAAAAAATTCTACCCGAATA+AGG + chr2_4:26937594-26937613 None:intergenic 25.0%
!!! CAGTTTAATTTTACTCTTTC+TGG - chr2_4:26938098-26938117 Msa0323260:intron 25.0%
! AGAAACATTCATATCAAGTA+TGG + chr2_4:26938211-26938230 None:intergenic 25.0%
! ATGTATTCTTTCTCGATAAT+AGG - chr2_4:26938388-26938407 Msa0323260:intron 25.0%
! TGTATTCTTTCTCGATAATA+GGG - chr2_4:26938389-26938408 Msa0323260:intron 25.0%
! AAATTTAGATTAAACCACGA+AGG + chr2_4:26938681-26938700 None:intergenic 25.0%
AAATTGAAAGATGGATCTGA+AGG + chr2_4:26932836-26932855 None:intergenic 30.0%
TGTTTCGAATTACGTAAACA+TGG - chr2_4:26932949-26932968 Msa0323260:three_prime_UTR 30.0%
ACTATCTGAATCTTCATTCA+GGG + chr2_4:26933106-26933125 None:intergenic 30.0%
!! ATATGTTCTGATGAGTTGAT+AGG - chr2_4:26933275-26933294 Msa0323260:intron 30.0%
CTTATCTCCATTTACAAGTT+TGG - chr2_4:26933505-26933524 Msa0323260:CDS 30.0%
AAGTTTGGTTGAAAATTGCA+AGG - chr2_4:26933520-26933539 Msa0323260:CDS 30.0%
AGTTTGGTTGAAAATTGCAA+GGG - chr2_4:26933521-26933540 Msa0323260:CDS 30.0%
!!! GAGTTCTTAGTCTTTTTTGA+TGG - chr2_4:26933556-26933575 Msa0323260:CDS 30.0%
ATATGGCATACTTATCCAAT+GGG - chr2_4:26933634-26933653 Msa0323260:intron 30.0%
! TCTCTTGACTTTAAGAACTA+GGG - chr2_4:26933700-26933719 Msa0323260:intron 30.0%
ATGTTGGATATCACTTCATT+TGG - chr2_4:26933758-26933777 Msa0323260:intron 30.0%
!! GAAGCTTTTTCTTTGTGTTA+TGG - chr2_4:26933783-26933802 Msa0323260:intron 30.0%
! TTCGCGTTGACAAAAAAATA+AGG - chr2_4:26933829-26933848 Msa0323260:CDS 30.0%
TTTCTTCTCTCTCTTTCATA+AGG + chr2_4:26933959-26933978 None:intergenic 30.0%
!!! TTATTTTTGGGACAACACTT+GGG + chr2_4:26934038-26934057 None:intergenic 30.0%
!!! ATTATTTTTGGGACAACACT+TGG + chr2_4:26934039-26934058 None:intergenic 30.0%
GTTGTCCCAAAAATAATTAC+TGG - chr2_4:26934042-26934061 Msa0323260:CDS 30.0%
GTTTCTTGAGGATTATTGTA+CGG + chr2_4:26934325-26934344 None:intergenic 30.0%
!! TTACTGGTTTGAATTCTTCA+TGG - chr2_4:26934637-26934656 Msa0323260:CDS 30.0%
!! TACTGGTTTGAATTCTTCAT+GGG - chr2_4:26934638-26934657 Msa0323260:CDS 30.0%
!! TTGATGCATGTTTTTGTCAT+TGG - chr2_4:26934741-26934760 Msa0323260:CDS 30.0%
! TCTAAGAGGCAATATTTTGT+GGG + chr2_4:26934803-26934822 None:intergenic 30.0%
!! TTCTAAGAGGCAATATTTTG+TGG + chr2_4:26934804-26934823 None:intergenic 30.0%
CAAACACAGAAGCTAATTTA+AGG + chr2_4:26934886-26934905 None:intergenic 30.0%
AAGCTCTTATAATCCAATGT+GGG - chr2_4:26935004-26935023 Msa0323260:CDS 30.0%
! TTTGATTTAGAGAAGCTGAT+TGG + chr2_4:26935052-26935071 None:intergenic 30.0%
AGATGTGTTAAAAACACTGT+TGG + chr2_4:26935100-26935119 None:intergenic 30.0%
CTTCACATACAAGTTTCTAA+AGG + chr2_4:26935203-26935222 None:intergenic 30.0%
!!! GATTTTTTTTGACAACTGCA+TGG - chr2_4:26935274-26935293 Msa0323260:CDS 30.0%
TTAGGCAGAAATGTTATCAA+TGG + chr2_4:26935352-26935371 None:intergenic 30.0%
!!! CGCGAACAATAATTTGTTTT+TGG - chr2_4:26935599-26935618 Msa0323260:intron 30.0%
ATAGCTGAATAACTTACGTT+TGG - chr2_4:26935670-26935689 Msa0323260:intron 30.0%
! ATTCATGTTTAAGGGTATGT+TGG - chr2_4:26935855-26935874 Msa0323260:intron 30.0%
! TTCATGTTTAAGGGTATGTT+GGG - chr2_4:26935856-26935875 Msa0323260:intron 30.0%
TGTTAAGTACAATACAGATC+AGG - chr2_4:26935944-26935963 Msa0323260:intron 30.0%
!!! GATAACTTTGCTGTTTTGTT+AGG - chr2_4:26935982-26936001 Msa0323260:intron 30.0%
TTGATAAAACTTCACTTCTC+TGG - chr2_4:26936281-26936300 Msa0323260:intron 30.0%
TCATCTTGTTAGCTATTGTT+GGG - chr2_4:26936741-26936760 Msa0323260:CDS 30.0%
TTATCAATGACTGCACAATA+TGG - chr2_4:26936824-26936843 Msa0323260:CDS 30.0%
AACAATGAATGTTGTGACAA+TGG + chr2_4:26937008-26937027 None:intergenic 30.0%
!! TCATTTCTGGTTATGTAAGT+GGG - chr2_4:26937047-26937066 Msa0323260:CDS 30.0%
AGATCCATAAAATATAGCCA+CGG + chr2_4:26937283-26937302 None:intergenic 30.0%
! TTAACACGACATGGATTATT+TGG + chr2_4:26937417-26937436 None:intergenic 30.0%
AATTACAAGGTGAGTTACAA+TGG - chr2_4:26937564-26937583 Msa0323260:intron 30.0%
! TTACAATGGAATGCCTTATT+CGG - chr2_4:26937578-26937597 Msa0323260:intron 30.0%
!!! GATTTACTTGCACTTTTTCA+TGG - chr2_4:26937636-26937655 Msa0323260:intron 30.0%
AGAGTCAGTAATTATTCTCA+TGG - chr2_4:26937660-26937679 Msa0323260:intron 30.0%
! CAAATTGCAATGACCTTTTT+AGG - chr2_4:26937696-26937715 Msa0323260:intron 30.0%
TTGTGTTTAATCAGCTTTCA+CGG + chr2_4:26937738-26937757 None:intergenic 30.0%
TAAATGCTGAGAACTACAAT+TGG - chr2_4:26937906-26937925 Msa0323260:intron 30.0%
!! TTCCAAACTAGCTTCTATTT+TGG - chr2_4:26938025-26938044 Msa0323260:intron 30.0%
ATCCAAAATAGAAGCTAGTT+TGG + chr2_4:26938030-26938049 None:intergenic 30.0%
ATGTTTATAGGGTAGTATGA+CGG - chr2_4:26938349-26938368 Msa0323260:intron 30.0%
! AAAGCTTTGATTTAGAATGC+AGG - chr2_4:26938446-26938465 Msa0323260:intron 30.0%
! AAGCTTTGATTTAGAATGCA+GGG - chr2_4:26938447-26938466 Msa0323260:intron 30.0%
AGCAAAATATCAGACTCTTA+TGG - chr2_4:26938504-26938523 Msa0323260:intron 30.0%
! GGCACCTATTTTGTAATAAA+AGG + chr2_4:26938543-26938562 None:intergenic 30.0%
CTTTATCTATTGTACGTAGA+GGG - chr2_4:26938597-26938616 Msa0323260:intron 30.0%
TTTATCTATTGTACGTAGAG+GGG - chr2_4:26938598-26938617 Msa0323260:intron 30.0%
!!! TTTGCCTTCTATTGTTTTTG+AGG - chr2_4:26938723-26938742 Msa0323260:five_prime_UTR 30.0%
ACATCCTCAAAAACAATAGA+AGG + chr2_4:26938730-26938749 None:intergenic 30.0%
ATTTCTCTTGTCTGTTTGTA+AGG - chr2_4:26938761-26938780 Msa0323260:five_prime_UTR 30.0%
GCCCTAAGAAAATTGAAAGA+TGG + chr2_4:26932845-26932864 None:intergenic 35.0%
CTATCTGAATCTTCATTCAG+GGG + chr2_4:26933105-26933124 None:intergenic 35.0%
CACTATCTGAATCTTCATTC+AGG + chr2_4:26933107-26933126 None:intergenic 35.0%
! AGCAACATTGGACAAGTTTT+AGG + chr2_4:26933161-26933180 None:intergenic 35.0%
GTTGCTCAAACCCTAATAAA+AGG - chr2_4:26933195-26933214 Msa0323260:intron 35.0%
! TAGGCTTTTAAGCAAACATG+AGG - chr2_4:26933294-26933313 Msa0323260:intron 35.0%
! AGGCTTTTAAGCAAACATGA+GGG - chr2_4:26933295-26933314 Msa0323260:intron 35.0%
! TTGTTTGATAGTTGCCGTAT+AGG + chr2_4:26933322-26933341 None:intergenic 35.0%
TGGCTGATATTGACCAATAA+AGG - chr2_4:26933445-26933464 Msa0323260:CDS 35.0%
GTTTGGTTGAAAATTGCAAG+GGG - chr2_4:26933522-26933541 Msa0323260:CDS 35.0%
TTTGGTTGAAAATTGCAAGG+GGG - chr2_4:26933523-26933542 Msa0323260:CDS 35.0%
TTACAATTGTTGAAGTGGTG+CGG - chr2_4:26933603-26933622 Msa0323260:intron 35.0%
CATATGGCATACTTATCCAA+TGG - chr2_4:26933633-26933652 Msa0323260:intron 35.0%
AGGAAATAAGTGAGTGCATA+AGG - chr2_4:26933668-26933687 Msa0323260:intron 35.0%
GGAAATAAGTGAGTGCATAA+GGG - chr2_4:26933669-26933688 Msa0323260:intron 35.0%
! CTCTCTTGACTTTAAGAACT+AGG - chr2_4:26933699-26933718 Msa0323260:intron 35.0%
GAAAATCACTTGTCACATTG+TGG - chr2_4:26933975-26933994 Msa0323260:CDS 35.0%
ATAAGCTCAAGAAAAGGGTA+TGG + chr2_4:26934164-26934183 None:intergenic 35.0%
TGGTAATACTGCTCACAAAT+GGG - chr2_4:26934381-26934400 Msa0323260:CDS 35.0%
TGTCTACTGATAGGTCTTAA+AGG + chr2_4:26934501-26934520 None:intergenic 35.0%
!!! TTTTTTCTTTCCAGGGAATG+TGG - chr2_4:26934541-26934560 Msa0323260:intron 35.0%
AAGATTCAAACGGCAAAAAG+TGG + chr2_4:26934573-26934592 None:intergenic 35.0%
CGATAAAACGACTGTACTTA+TGG - chr2_4:26934696-26934715 Msa0323260:CDS 35.0%
!! TATCCATACTGAGTTCTAAG+AGG + chr2_4:26934817-26934836 None:intergenic 35.0%
GAAGCTCTTATAATCCAATG+TGG - chr2_4:26935003-26935022 Msa0323260:CDS 35.0%
ACCTTGACTTAAAAAAACCC+AGG - chr2_4:26935395-26935414 Msa0323260:intron 35.0%
!!! ACCTGGGTTTTTTTAAGTCA+AGG + chr2_4:26935399-26935418 None:intergenic 35.0%
CAATTCTTCAATTATCCCCA+AGG + chr2_4:26935553-26935572 None:intergenic 35.0%
!!! TCTTTCCTTGCTGGTTTTAT+TGG - chr2_4:26935700-26935719 Msa0323260:intron 35.0%
ATCAACCAATAAAACCAGCA+AGG + chr2_4:26935708-26935727 None:intergenic 35.0%
! TCATGTTTAAGGGTATGTTG+GGG - chr2_4:26935857-26935876 Msa0323260:intron 35.0%
TGATGTTCTTGTGTGTGTAA+AGG + chr2_4:26935923-26935942 None:intergenic 35.0%
GATCAGGTGAGAAAATTGTT+TGG - chr2_4:26935960-26935979 Msa0323260:intron 35.0%
!!! TGCTGTTTTGTTAGGTGTTT+TGG - chr2_4:26935990-26936009 Msa0323260:intron 35.0%
!! GCTGTTTTGTTAGGTGTTTT+GGG - chr2_4:26935991-26936010 Msa0323260:intron 35.0%
!! CTGTTTTGTTAGGTGTTTTG+GGG - chr2_4:26935992-26936011 Msa0323260:intron 35.0%
TGCAAAAAGAGGACCAATTA+TGG + chr2_4:26936029-26936048 None:intergenic 35.0%
CATGAATGATCTGCAAAAAG+AGG + chr2_4:26936040-26936059 None:intergenic 35.0%
GTGTCTAAAAGTGACATTAG+TGG + chr2_4:26936141-26936160 None:intergenic 35.0%
!!! CTAATGTCACTTTTAGACAC+CGG - chr2_4:26936141-26936160 Msa0323260:intron 35.0%
AGTCCAGATATACATCAAAC+CGG + chr2_4:26936163-26936182 None:intergenic 35.0%
GTGGTGTTTATTATTGCCAT+TGG - chr2_4:26936241-26936260 Msa0323260:intron 35.0%
GACACATAGCATATAACCAA+TGG + chr2_4:26936260-26936279 None:intergenic 35.0%
! TCTGGTTTGTGTAGATTCAT+TGG - chr2_4:26936299-26936318 Msa0323260:intron 35.0%
ATGATGGTCATATTCCTAAC+TGG - chr2_4:26936343-26936362 Msa0323260:intron 35.0%
ATGACTATGCAAAGTATGCT+CGG - chr2_4:26936401-26936420 Msa0323260:intron 35.0%
! AGATGATGATTTGGAAACTC+TGG - chr2_4:26936426-26936445 Msa0323260:intron 35.0%
CACAATGAAATTTCCAGGAA+TGG + chr2_4:26936551-26936570 None:intergenic 35.0%
CATTCCTGGAAATTTCATTG+TGG - chr2_4:26936549-26936568 Msa0323260:intron 35.0%
!! TTGTGCATGGTGATGTTTTT+CGG - chr2_4:26936645-26936664 Msa0323260:intron 35.0%
GTCATCTTGTTAGCTATTGT+TGG - chr2_4:26936740-26936759 Msa0323260:intron 35.0%
!! GTCATTTCTGGTTATGTAAG+TGG - chr2_4:26937046-26937065 Msa0323260:CDS 35.0%
!! CATTTCTGGTTATGTAAGTG+GGG - chr2_4:26937048-26937067 Msa0323260:CDS 35.0%
!! ATTTCTGGTTATGTAAGTGG+GGG - chr2_4:26937049-26937068 Msa0323260:CDS 35.0%
! AACACCGTGGCTATATTTTA+TGG - chr2_4:26937276-26937295 Msa0323260:intron 35.0%
!! TGGTGGTTGTCTTTGTTATT+TGG - chr2_4:26937328-26937347 Msa0323260:intron 35.0%
!! GGTGGTTGTCTTTGTTATTT+GGG - chr2_4:26937329-26937348 Msa0323260:intron 35.0%
TCAATGAATATGCTGCCAAA+GGG + chr2_4:26937516-26937535 None:intergenic 35.0%
!! TACTTCCTTCTGGAATTACA+AGG - chr2_4:26937551-26937570 Msa0323260:intron 35.0%
! TACAATGGAATGCCTTATTC+GGG - chr2_4:26937579-26937598 Msa0323260:intron 35.0%
TACAAGGGTTACTCCTAAAA+AGG + chr2_4:26937712-26937731 None:intergenic 35.0%
TGTGTTTAATCAGCTTTCAC+GGG + chr2_4:26937737-26937756 None:intergenic 35.0%
CAAAGTGGAAGGAAAAAGAA+TGG + chr2_4:26937785-26937804 None:intergenic 35.0%
! TTCTTTTTCCTTCCACTTTG+TGG - chr2_4:26937785-26937804 Msa0323260:intron 35.0%
TACAGTATGTGTGACAATTG+TGG - chr2_4:26937868-26937887 Msa0323260:intron 35.0%
ACAGTATGTGTGACAATTGT+GGG - chr2_4:26937869-26937888 Msa0323260:intron 35.0%
TATGTGAAGACAAAGATGTC+AGG - chr2_4:26937998-26938017 Msa0323260:intron 35.0%
GAATGTTTCTTCAAATGTGC+AGG - chr2_4:26938221-26938240 Msa0323260:intron 35.0%
! TTGGTTCGAATTTGTTTGTG+AGG - chr2_4:26938258-26938277 Msa0323260:intron 35.0%
CTTAGTCACACTTGATATTG+CGG + chr2_4:26938292-26938311 None:intergenic 35.0%
ACTACCCTATAAACATTGCT+TGG + chr2_4:26938345-26938364 None:intergenic 35.0%
TGTTTATAGGGTAGTATGAC+GGG - chr2_4:26938350-26938369 Msa0323260:intron 35.0%
AAAGCTTTCAATTACAGCCA+GGG + chr2_4:26938434-26938453 None:intergenic 35.0%
ACAATAGATAAAGCGCGTTT+GGG + chr2_4:26938590-26938609 None:intergenic 35.0%
TACAATAGATAAAGCGCGTT+TGG + chr2_4:26938591-26938610 None:intergenic 35.0%
GCTTTATCTATTGTACGTAG+AGG - chr2_4:26938596-26938615 Msa0323260:intron 35.0%
GAGAGAGTCTCAATTCTTCA+AGG - chr2_4:26932635-26932654 Msa0323260:three_prime_UTR 40.0%
!!! TTTTGGTTTCTCTCTCGTCA+AGG - chr2_4:26932677-26932696 Msa0323260:three_prime_UTR 40.0%
GAATCTGAAGAACATCGTGA+TGG + chr2_4:26932716-26932735 None:intergenic 40.0%
TATTAGGGTTTGAGCAACCT+GGG + chr2_4:26933193-26933212 None:intergenic 40.0%
TTATTAGGGTTTGAGCAACC+TGG + chr2_4:26933194-26933213 None:intergenic 40.0%
AACCCTAATAAAAGGACGAG+CGG - chr2_4:26933203-26933222 Msa0323260:intron 40.0%
! TTCCGCTCGTCCTTTTATTA+GGG + chr2_4:26933208-26933227 None:intergenic 40.0%
! GGCTTTTAAGCAAACATGAG+GGG - chr2_4:26933296-26933315 Msa0323260:intron 40.0%
TTCGTTGTAGGACTAAAGCT+AGG - chr2_4:26933397-26933416 Msa0323260:CDS 40.0%
TCGTTGTAGGACTAAAGCTA+GGG - chr2_4:26933398-26933417 Msa0323260:CDS 40.0%
!! GACTAAAGCTAGGGTTTTAG+TGG - chr2_4:26933407-26933426 Msa0323260:CDS 40.0%
TTGAAAATTGCAAGGGGGTT+GGG - chr2_4:26933528-26933547 Msa0323260:CDS 40.0%
GCATACTTATCCAATGGGAA+AGG - chr2_4:26933639-26933658 Msa0323260:intron 40.0%
TCCAATGGGAAAGGTTGTTT+AGG - chr2_4:26933648-26933667 Msa0323260:intron 40.0%
TCCTAAACAACCTTTCCCAT+TGG + chr2_4:26933652-26933671 None:intergenic 40.0%
! CTTGACTTTAAGAACTAGGG+TGG - chr2_4:26933703-26933722 Msa0323260:intron 40.0%
ACAACACTTGGGTGACAATA+TGG - chr2_4:26933852-26933871 Msa0323260:CDS 40.0%
ATCACTTGTCACATTGTGGT+TGG - chr2_4:26933979-26933998 Msa0323260:CDS 40.0%
ACCTACTTTGTTGACCCAAA+GGG + chr2_4:26934302-26934321 None:intergenic 40.0%
CATTTGTGAGCAGTATTACC+AGG + chr2_4:26934382-26934401 None:intergenic 40.0%
CTGGTAATACTGCTCACAAA+TGG - chr2_4:26934380-26934399 Msa0323260:CDS 40.0%
GGTAATACTGCTCACAAATG+GGG - chr2_4:26934382-26934401 Msa0323260:CDS 40.0%
AGACCTATCAGTAGACAAAC+TGG - chr2_4:26934504-26934523 Msa0323260:intron 40.0%
AAGCCAGTTTGTCTACTGAT+AGG + chr2_4:26934510-26934529 None:intergenic 40.0%
TTGCCTCGTCAAGATTCAAA+CGG + chr2_4:26934583-26934602 None:intergenic 40.0%
TTTGAATCTTGACGAGGCAA+AGG - chr2_4:26934583-26934602 Msa0323260:intron 40.0%
GGCAAAGGTTAAACAGTTCA+AGG - chr2_4:26934598-26934617 Msa0323260:intron 40.0%
! AGAGGCAATATTTTGTGGGT+TGG + chr2_4:26934799-26934818 None:intergenic 40.0%
TTGCCTCTTAGAACTCAGTA+TGG - chr2_4:26934811-26934830 Msa0323260:intron 40.0%
!! AACTTCACAAAAAGCACCGT+TGG - chr2_4:26934837-26934856 Msa0323260:intron 40.0%
CTTCTGTGTTTGTGTTTCGT+TGG - chr2_4:26934894-26934913 Msa0323260:intron 40.0%
ACAGAGAGTAAATCCCACAT+TGG + chr2_4:26935020-26935039 None:intergenic 40.0%
AATCAAGAAGATGCCATTGC+AGG - chr2_4:26935071-26935090 Msa0323260:intron 40.0%
CTAACAGTGATGTCAAATGC+CGG - chr2_4:26935230-26935249 Msa0323260:CDS 40.0%
! GAAATGTTATCAATGGCGGA+TGG + chr2_4:26935345-26935364 None:intergenic 40.0%
GGCAGAAATGTTATCAATGG+CGG + chr2_4:26935349-26935368 None:intergenic 40.0%
!! CGTTTTCAATACCTAGCCTT+GGG - chr2_4:26935534-26935553 Msa0323260:intron 40.0%
!!! GTTTTCAATACCTAGCCTTG+GGG - chr2_4:26935535-26935554 Msa0323260:intron 40.0%
CATATCAAATGGACAGAGAG+AGG + chr2_4:26935796-26935815 None:intergenic 40.0%
! GGTTCATGAAGTGCCATAAT+TGG - chr2_4:26936013-26936032 Msa0323260:intron 40.0%
AAAGATCTTCCTGCTTCCAA+AGG + chr2_4:26936089-26936108 None:intergenic 40.0%
TTTGGAAGCAGGAAGATCTT+TGG - chr2_4:26936088-26936107 Msa0323260:intron 40.0%
!! ACACCGGTTTGATGTATATC+TGG - chr2_4:26936157-26936176 Msa0323260:intron 40.0%
CTATCCATTCTTTGAGCATC+AGG - chr2_4:26936181-26936200 Msa0323260:intron 40.0%
ATCACCTGATGCTCAAAGAA+TGG + chr2_4:26936188-26936207 None:intergenic 40.0%
GGTCATATTCCTAACTGGAT+TGG - chr2_4:26936348-26936367 Msa0323260:intron 40.0%
TCATAGACACCAATCCAGTT+AGG + chr2_4:26936360-26936379 None:intergenic 40.0%
TGACTATGCAAAGTATGCTC+GGG - chr2_4:26936402-26936421 Msa0323260:intron 40.0%
TCTTTCAGCTGTTGTTGGTA+CGG - chr2_4:26936688-26936707 Msa0323260:intron 40.0%
CAACAGGAAAACTAGAGCAA+CGG + chr2_4:26936914-26936933 None:intergenic 40.0%
TTTCCTTTAATATGCAGCCG+AGG - chr2_4:26936980-26936999 Msa0323260:CDS 40.0%
!! TTTCTGGTTATGTAAGTGGG+GGG - chr2_4:26937050-26937069 Msa0323260:CDS 40.0%
AAGTGATGCTGTAAGGATCA+TGG + chr2_4:26937220-26937239 None:intergenic 40.0%
ATGGGAAAAGTGATGCTGTA+AGG + chr2_4:26937227-26937246 None:intergenic 40.0%
CAATTCCAAAGCACAGGAAT+GGG + chr2_4:26937245-26937264 None:intergenic 40.0%
TGAATCCAATTCCAAAGCAC+AGG + chr2_4:26937251-26937270 None:intergenic 40.0%
TGGATTCATCTTAAACACCG+TGG - chr2_4:26937263-26937282 Msa0323260:intron 40.0%
ACAACCACCATTGTACCAAA+GGG + chr2_4:26937318-26937337 None:intergenic 40.0%
TACCACTTCTTCTCAGGAAT+GGG + chr2_4:26937453-26937472 None:intergenic 40.0%
CTCAATGAATATGCTGCCAA+AGG + chr2_4:26937517-26937536 None:intergenic 40.0%
ACTCACCTTGTAATTCCAGA+AGG + chr2_4:26937559-26937578 None:intergenic 40.0%
CATAGACATAGTACACCTGT+TGG + chr2_4:26937811-26937830 None:intergenic 40.0%
CAACAGGTGTACTATGTCTA+TGG - chr2_4:26937809-26937828 Msa0323260:intron 40.0%
CAGTATGTGTGACAATTGTG+GGG - chr2_4:26937870-26937889 Msa0323260:intron 40.0%
CTGAGAACTACAATTGGCAA+TGG - chr2_4:26937912-26937931 Msa0323260:intron 40.0%
TTTCTTTCAGCTGCATCAAC+AGG - chr2_4:26937941-26937960 Msa0323260:intron 40.0%
! TACACTGCGATGTTTTGTCT+TGG - chr2_4:26938049-26938068 Msa0323260:intron 40.0%
TCATGTATTCACTCTGCACA+AGG - chr2_4:26938123-26938142 Msa0323260:intron 40.0%
CATGTATTCACTCTGCACAA+GGG - chr2_4:26938124-26938143 Msa0323260:intron 40.0%
AGGTATTCAGCACGTGATTA+AGG + chr2_4:26938160-26938179 None:intergenic 40.0%
! GTTCGAATTTGTTTGTGAGG+AGG - chr2_4:26938261-26938280 Msa0323260:intron 40.0%
CGCAATATCAAGTGTGACTA+AGG - chr2_4:26938290-26938309 Msa0323260:intron 40.0%
GGGACCAAGCAATGTTTATA+GGG - chr2_4:26938338-26938357 Msa0323260:intron 40.0%
GTTTATAGGGTAGTATGACG+GGG - chr2_4:26938351-26938370 Msa0323260:intron 40.0%
!! TATGACGGGGTTTTGATGAT+GGG - chr2_4:26938364-26938383 Msa0323260:intron 40.0%
!!! ACCCTGAGATTTTTTTTCCC+TGG - chr2_4:26938414-26938433 Msa0323260:intron 40.0%
GCCAGGGAAAAAAAATCTCA+GGG + chr2_4:26938418-26938437 None:intergenic 40.0%
AGCCAGGGAAAAAAAATCTC+AGG + chr2_4:26938419-26938438 None:intergenic 40.0%
CAAAGCTTTCAATTACAGCC+AGG + chr2_4:26938435-26938454 None:intergenic 40.0%
! GATTAAACCACGAAGGTATG+TGG + chr2_4:26938674-26938693 None:intergenic 40.0%
! AAGTCCTCTTTCGCTCGTTT+TGG - chr2_4:26932660-26932679 Msa0323260:three_prime_UTR 45.0%
GAAACCAAAACGAGCGAAAG+AGG + chr2_4:26932667-26932686 None:intergenic 45.0%
TCTGAAGAACATCGTGATGG+TGG + chr2_4:26932713-26932732 None:intergenic 45.0%
ACTGACCTTGTGATCTGACT+CGG + chr2_4:26932779-26932798 None:intergenic 45.0%
ATTAGGGTTTGAGCAACCTG+GGG + chr2_4:26933192-26933211 None:intergenic 45.0%
! GTTCCGCTCGTCCTTTTATT+AGG + chr2_4:26933209-26933228 None:intergenic 45.0%
AGCGGAACTTAGCTTCCAAA+TGG - chr2_4:26933221-26933240 Msa0323260:intron 45.0%
GTTGAAAATTGCAAGGGGGT+TGG - chr2_4:26933527-26933546 Msa0323260:CDS 45.0%
AATTGTTGAAGTGGTGCGGA+TGG - chr2_4:26933607-26933626 Msa0323260:intron 45.0%
GTGCCAATGTCATGTGACAT+TGG - chr2_4:26933874-26933893 Msa0323260:CDS 45.0%
TGGCCAATGTCACATGACAT+TGG + chr2_4:26933880-26933899 None:intergenic 45.0%
GACATGTGGCATATTGTGGT+TGG + chr2_4:26933900-26933919 None:intergenic 45.0%
GAGTGACATGTGGCATATTG+TGG + chr2_4:26933904-26933923 None:intergenic 45.0%
AAGAGATGCTCAGTGTTCAC+AGG + chr2_4:26934225-26934244 None:intergenic 45.0%
AGATGACCCAGTTACCCTTT+GGG - chr2_4:26934285-26934304 Msa0323260:intron 45.0%
TGTTGACCCAAAGGGTAACT+GGG + chr2_4:26934294-26934313 None:intergenic 45.0%
TTGTTGACCCAAAGGGTAAC+TGG + chr2_4:26934295-26934314 None:intergenic 45.0%
ACCCTTTGGGTCAACAAAGT+AGG - chr2_4:26934298-26934317 Msa0323260:intron 45.0%
GACCTACTTTGTTGACCCAA+AGG + chr2_4:26934303-26934322 None:intergenic 45.0%
TTGTGAGCAGTATTACCAGG+TGG + chr2_4:26934379-26934398 None:intergenic 45.0%
AATACTGCTCACAAATGGGG+CGG - chr2_4:26934385-26934404 Msa0323260:intron 45.0%
CAATAAGTTCGTTGCCACCA+AGG + chr2_4:26934423-26934442 None:intergenic 45.0%
TCTTTCCAGGGAATGTGGAA+AGG - chr2_4:26934546-26934565 Msa0323260:intron 45.0%
! TTGCCGTTTGAATCTTGACG+AGG - chr2_4:26934577-26934596 Msa0323260:intron 45.0%
CGGCATTTGACATCACTGTT+AGG + chr2_4:26935232-26935251 None:intergenic 45.0%
GCATGGCCAATTTGAGAAGA+TGG - chr2_4:26935291-26935310 Msa0323260:CDS 45.0%
TGGCCAATTTGAGAAGATGG+CGG - chr2_4:26935294-26935313 Msa0323260:CDS 45.0%
AAGCCGCCATCTTCTCAAAT+TGG + chr2_4:26935300-26935319 None:intergenic 45.0%
!! TTGAGAAGATGGCGGCTTTT+TGG - chr2_4:26935302-26935321 Msa0323260:CDS 45.0%
!! ATGTTATCAATGGCGGATGG+CGG + chr2_4:26935342-26935361 None:intergenic 45.0%
ACATGCAGAAGAAGCTCTGT+AGG + chr2_4:26935422-26935441 None:intergenic 45.0%
ACAGAGCTTCTTCTGCATGT+TGG - chr2_4:26935422-26935441 Msa0323260:intron 45.0%
CAGAGCTTCTTCTGCATGTT+GGG - chr2_4:26935423-26935442 Msa0323260:intron 45.0%
! GCGTTTTCAATACCTAGCCT+TGG - chr2_4:26935533-26935552 Msa0323260:intron 45.0%
CTTCAATTATCCCCAAGGCT+AGG + chr2_4:26935548-26935567 None:intergenic 45.0%
TCCAGATGATCTTCCGTTGT+GGG - chr2_4:26935749-26935768 Msa0323260:intron 45.0%
CCACTATCACTGTTCTTGTC+AGG + chr2_4:26935891-26935910 None:intergenic 45.0%
CCTGACAAGAACAGTGATAG+TGG - chr2_4:26935888-26935907 Msa0323260:intron 45.0%
TCATGATGACCCGAAACCTT+TGG - chr2_4:26936070-26936089 Msa0323260:intron 45.0%
TTCCTGCTTCCAAAGGTTTC+GGG + chr2_4:26936082-26936101 None:intergenic 45.0%
CTTCCTGCTTCCAAAGGTTT+CGG + chr2_4:26936083-26936102 None:intergenic 45.0%
TGCTCGGGAAGATGATGATT+TGG - chr2_4:26936417-26936436 Msa0323260:intron 45.0%
AGAGACGTCAGTGAAGAATC+TGG - chr2_4:26936614-26936633 Msa0323260:intron 45.0%
GCTCTTCTTTCAGCTGTTGT+TGG - chr2_4:26936683-26936702 Msa0323260:intron 45.0%
CTTTCAGCTGTTGTTGGTAC+GGG - chr2_4:26936689-26936708 Msa0323260:intron 45.0%
ATGTTGTGACAATGGCTCCT+CGG + chr2_4:26937000-26937019 None:intergenic 45.0%
! CTTTTCCCATTCCTGTGCTT+TGG - chr2_4:26937237-26937256 Msa0323260:intron 45.0%
CCAATTCCAAAGCACAGGAA+TGG + chr2_4:26937246-26937265 None:intergenic 45.0%
!! CCATTCCTGTGCTTTGGAAT+TGG - chr2_4:26937243-26937262 Msa0323260:intron 45.0%
AGCAATCCCCTTTGGTACAA+TGG - chr2_4:26937308-26937327 Msa0323260:intron 45.0%
AATCCCCTTTGGTACAATGG+TGG - chr2_4:26937311-26937330 Msa0323260:intron 45.0%
CAACCACCATTGTACCAAAG+GGG + chr2_4:26937317-26937336 None:intergenic 45.0%
GACAACCACCATTGTACCAA+AGG + chr2_4:26937319-26937338 None:intergenic 45.0%
TCTTTCCCTCTTGCACTTCT+TGG - chr2_4:26937360-26937379 Msa0323260:intron 45.0%
GCACAGTTGTTGGAAGAAAC+TGG - chr2_4:26937382-26937401 Msa0323260:intron 45.0%
GTTGTTGGAAGAAACTGGAG+CGG - chr2_4:26937387-26937406 Msa0323260:intron 45.0%
! GGAATGGTCTTAACACGACA+TGG + chr2_4:26937426-26937445 None:intergenic 45.0%
GTACCACTTCTTCTCAGGAA+TGG + chr2_4:26937454-26937473 None:intergenic 45.0%
ACCCTCTGTAGTTTCTCTGA+TGG - chr2_4:26937479-26937498 Msa0323260:intron 45.0%
CCCATCAGAGAAACTACAGA+GGG + chr2_4:26937483-26937502 None:intergenic 45.0%
CCCTCTGTAGTTTCTCTGAT+GGG - chr2_4:26937480-26937499 Msa0323260:intron 45.0%
ACCCATCAGAGAAACTACAG+AGG + chr2_4:26937484-26937503 None:intergenic 45.0%
TCTGTAGTTTCTCTGATGGG+TGG - chr2_4:26937483-26937502 Msa0323260:intron 45.0%
CAGCTTTCACGGGAATACAA+GGG + chr2_4:26937727-26937746 None:intergenic 45.0%
TCAGCTTTCACGGGAATACA+AGG + chr2_4:26937728-26937747 None:intergenic 45.0%
TGTCTATGGCTTCATGCTAC+TGG - chr2_4:26937823-26937842 Msa0323260:intron 45.0%
! TGCGATGTTTTGTCTTGGAC+TGG - chr2_4:26938054-26938073 Msa0323260:intron 45.0%
! GCGATGTTTTGTCTTGGACT+GGG - chr2_4:26938055-26938074 Msa0323260:intron 45.0%
TTCACTCTGCACAAGGGAAA+TGG - chr2_4:26938130-26938149 Msa0323260:intron 45.0%
TCACTCTGCACAAGGGAAAT+GGG - chr2_4:26938131-26938150 Msa0323260:intron 45.0%
TTCAAATGTGCAGGAGCTGT+GGG - chr2_4:26938230-26938249 Msa0323260:intron 45.0%
TAAGGCTTAGATGAAGCCTC+TGG - chr2_4:26938308-26938327 Msa0323260:intron 45.0%
GGGGACCAAGCAATGTTTAT+AGG - chr2_4:26938337-26938356 Msa0323260:intron 45.0%
!! GTATGACGGGGTTTTGATGA+TGG - chr2_4:26938363-26938382 Msa0323260:intron 45.0%
CAGACATCAGTTCGTCAATC+TGG + chr2_4:26938564-26938583 None:intergenic 45.0%
!! TGTGGAGGAAGTACTCAGAA+CGG + chr2_4:26938656-26938675 None:intergenic 45.0%
! TAAACCACGAAGGTATGTGG+AGG + chr2_4:26938671-26938690 None:intergenic 45.0%
TTAGGGTTTGAGCAACCTGG+GGG + chr2_4:26933191-26933210 None:intergenic 50.0%
GCAAACATGAGGGGCCTATA+CGG - chr2_4:26933305-26933324 Msa0323260:intron 50.0%
!! CTAGGGTTTTAGTGGTGTGC+CGG - chr2_4:26933415-26933434 Msa0323260:CDS 50.0%
!! TAGGGTTTTAGTGGTGTGCC+GGG - chr2_4:26933416-26933435 Msa0323260:CDS 50.0%
CAATATCAGCCATTGCCTCC+CGG + chr2_4:26933437-26933456 None:intergenic 50.0%
! TTGTGGTTGGCCAATGTCAC+AGG - chr2_4:26933992-26934011 Msa0323260:CDS 50.0%
TGGCCAATGTCACAGGACAT+TGG - chr2_4:26933999-26934018 Msa0323260:CDS 50.0%
GTGCCAATGTCCTGTGACAT+TGG + chr2_4:26934005-26934024 None:intergenic 50.0%
ACAACACTTGGGTGACATGG+TGG + chr2_4:26934027-26934046 None:intergenic 50.0%
CAAAGGGTAACTGGGTCATC+TGG + chr2_4:26934286-26934305 None:intergenic 50.0%
CAGATGACCCAGTTACCCTT+TGG - chr2_4:26934284-26934303 Msa0323260:intron 50.0%
TTACCAGGTGGACGGCAAAA+TGG + chr2_4:26934367-26934386 None:intergenic 50.0%
GAGCAGTATTACCAGGTGGA+CGG + chr2_4:26934375-26934394 None:intergenic 50.0%
CAAGAAGATGCCATTGCAGG+AGG - chr2_4:26935074-26935093 Msa0323260:intron 50.0%
GAAGAAGCTCTGTAGGACCT+GGG + chr2_4:26935415-26935434 None:intergenic 50.0%
AGAAGAAGCTCTGTAGGACC+TGG + chr2_4:26935416-26935435 None:intergenic 50.0%
TCTTCTGCATGTTGGGTCCA+TGG - chr2_4:26935430-26935449 Msa0323260:intron 50.0%
! GGCACTGTTTCTTTCCTTGC+TGG - chr2_4:26935691-26935710 Msa0323260:intron 50.0%
GTCCAGATGATCTTCCGTTG+TGG - chr2_4:26935748-26935767 Msa0323260:intron 50.0%
CCAGATGATCTTCCGTTGTG+GGG - chr2_4:26935750-26935769 Msa0323260:intron 50.0%
GTGATAGGCATACCCCACAA+CGG + chr2_4:26935765-26935784 None:intergenic 50.0%
ACGTCAGTGAAGAATCTGGC+TGG - chr2_4:26936618-26936637 Msa0323260:intron 50.0%
TCTGGCTGGAAACTTGTGCA+TGG - chr2_4:26936632-26936651 Msa0323260:intron 50.0%
GAAAGAAGAGCCAAACTGCG+AGG + chr2_4:26936674-26936693 None:intergenic 50.0%
GCTCCTCGGCTGCATATTAA+AGG + chr2_4:26936986-26937005 None:intergenic 50.0%
GCTCTCACGTCAGTCATTTC+TGG - chr2_4:26937034-26937053 Msa0323260:CDS 50.0%
GGGGGATGTACTCACGTAAT+GGG - chr2_4:26937068-26937087 Msa0323260:CDS 50.0%
GGGGATGTACTCACGTAATG+GGG - chr2_4:26937069-26937088 Msa0323260:CDS 50.0%
GGGATGTACTCACGTAATGG+GGG - chr2_4:26937070-26937089 Msa0323260:CDS 50.0%
! GTACTCACGTAATGGGGGTA+AGG - chr2_4:26937075-26937094 Msa0323260:CDS 50.0%
TCTCTAGCAGCAATCCCCTT+TGG - chr2_4:26937300-26937319 Msa0323260:intron 50.0%
! CTGTGCCAAGAAGTGCAAGA+GGG + chr2_4:26937368-26937387 None:intergenic 50.0%
! ACTGTGCCAAGAAGTGCAAG+AGG + chr2_4:26937369-26937388 None:intergenic 50.0%
GCACTTCTTGGCACAGTTGT+TGG - chr2_4:26937372-26937391 Msa0323260:intron 50.0%
TTCTTCTCAGGAATGGGACG+AGG + chr2_4:26937447-26937466 None:intergenic 50.0%
GTCCCATTCCTGAGAAGAAG+TGG - chr2_4:26937448-26937467 Msa0323260:intron 50.0%
! GTGAGGTACCACTTCTTCTC+AGG + chr2_4:26937459-26937478 None:intergenic 50.0%
! GAGAAACTACAGAGGGTGTG+AGG + chr2_4:26937476-26937495 None:intergenic 50.0%
TACACCTGTTGGCCACAAAG+TGG + chr2_4:26937800-26937819 None:intergenic 50.0%
! CTTGGACTGGGAATTCTCTG+TGG - chr2_4:26938067-26938086 Msa0323260:intron 50.0%
CTTCAAATGTGCAGGAGCTG+TGG - chr2_4:26938229-26938248 Msa0323260:intron 50.0%
AGATGAAGCCTCTGGTCATG+TGG - chr2_4:26938316-26938335 Msa0323260:intron 50.0%
GATGAAGCCTCTGGTCATGT+GGG - chr2_4:26938317-26938336 Msa0323260:intron 50.0%
ATGAAGCCTCTGGTCATGTG+GGG - chr2_4:26938318-26938337 Msa0323260:intron 50.0%
ACGTAGAGGGGATGAAGTCT+CGG - chr2_4:26938610-26938629 Msa0323260:CDS 50.0%
ACTTCCTCCACATACCTTCG+TGG - chr2_4:26938664-26938683 Msa0323260:exon 50.0%
!! GTGATCTGACTCGGAAGCGA+AGG + chr2_4:26932770-26932789 None:intergenic 55.0%
CGCTTCCGAGTCAGATCACA+AGG - chr2_4:26932771-26932790 Msa0323260:three_prime_UTR 55.0%
! GGGGGCATATCGAGCAACAT+TGG + chr2_4:26933173-26933192 None:intergenic 55.0%
ATGTTGCTCGATATGCCCCC+AGG - chr2_4:26933173-26933192 Msa0323260:intron 55.0%
GTGGTGCGGATGGTGACATA+TGG - chr2_4:26933617-26933636 Msa0323260:intron 55.0%
GGGACAACACTTGGGTGACA+TGG + chr2_4:26934030-26934049 None:intergenic 55.0%
GGGTAACTGGGTCATCTGGT+TGG + chr2_4:26934282-26934301 None:intergenic 55.0%
GTGGTCCTTTCCACATTCCC+TGG + chr2_4:26934554-26934573 None:intergenic 55.0%
! ACACTGTTGGCCTCCTGCAA+TGG + chr2_4:26935087-26935106 None:intergenic 55.0%
GTGATGTCAAATGCCGGCCA+TGG - chr2_4:26935236-26935255 Msa0323260:CDS 55.0%
ATGTCAAATGCCGGCCATGG+TGG - chr2_4:26935239-26935258 Msa0323260:CDS 55.0%
TCCACCACCACAATCCACCA+TGG + chr2_4:26935256-26935275 None:intergenic 55.0%
CCCCACAACGGAAGATCATC+TGG + chr2_4:26935753-26935772 None:intergenic 55.0%
AGAGAGGCAGAGACGGTGAT+AGG + chr2_4:26935780-26935799 None:intergenic 55.0%
TGGACAGAGAGAGGCAGAGA+CGG + chr2_4:26935787-26935806 None:intergenic 55.0%
! GACCCGAAACCTTTGGAAGC+AGG - chr2_4:26936077-26936096 Msa0323260:intron 55.0%
! TTTTCGGCCTCCTCGCAGTT+TGG - chr2_4:26936661-26936680 Msa0323260:intron 55.0%
AGAAGAGCCAAACTGCGAGG+AGG + chr2_4:26936671-26936690 None:intergenic 55.0%
GGGGGGATGTACTCACGTAA+TGG - chr2_4:26937067-26937086 Msa0323260:CDS 55.0%
CTCAGGAATGGGACGAGGAA+TGG + chr2_4:26937442-26937461 None:intergenic 55.0%
!! ATGGGTGGACTGCTTCCCTT+TGG - chr2_4:26937498-26937517 Msa0323260:intron 55.0%
CCTGTTGGCCACAAAGTGGA+AGG + chr2_4:26937796-26937815 None:intergenic 55.0%
CCTTCCACTTTGTGGCCAAC+AGG - chr2_4:26937793-26937812 Msa0323260:intron 55.0%
GAGAGAGGAGGAGAAGGAGG+AGG + chr2_4:26932744-26932763 None:intergenic 60.0%
CCTCCTTCTCCTCCTCTCTC+CGG - chr2_4:26932744-26932763 Msa0323260:three_prime_UTR 60.0%
!! TCTGACTCGGAAGCGAAGGC+CGG + chr2_4:26932766-26932785 None:intergenic 60.0%
!! GGTTTTAGTGGTGTGCCGGG+AGG - chr2_4:26933419-26933438 Msa0323260:CDS 60.0%
CAGGTGGACGGCAAAATGGC+AGG + chr2_4:26934363-26934382 None:intergenic 60.0%
!!! CTGCCATTTTGCCGTCCACC+TGG - chr2_4:26934361-26934380 Msa0323260:CDS 60.0%
GCTCACAAATGGGGCGGTCT+AGG - chr2_4:26934391-26934410 Msa0323260:intron 60.0%
CAAATGGGGCGGTCTAGGTG+AGG - chr2_4:26934396-26934415 Msa0323260:intron 60.0%
GGTCTAGGTGAGGTCCTTGG+TGG - chr2_4:26934406-26934425 Msa0323260:intron 60.0%
!! ATGCCGGCCATGGTGGATTG+TGG - chr2_4:26935246-26935265 Msa0323260:CDS 60.0%
CCACCACAATCCACCATGGC+CGG + chr2_4:26935252-26935271 None:intergenic 60.0%
!! GCCATGGTGGATTGTGGTGG+TGG - chr2_4:26935252-26935271 Msa0323260:CDS 60.0%
!! CAATGGCGGATGGCGGACAA+AGG + chr2_4:26935335-26935354 None:intergenic 60.0%
GCAGGAGCTGTGGGTCATCT+TGG - chr2_4:26938239-26938258 Msa0323260:intron 60.0%
CTTGGTCCCCACATGACCAG+AGG + chr2_4:26938327-26938346 None:intergenic 60.0%
CCGGAGAGAGGAGGAGAAGG+AGG + chr2_4:26932747-26932766 None:intergenic 65.0%
AGGCCGGAGAGAGGAGGAGA+AGG + chr2_4:26932750-26932769 None:intergenic 65.0%
AAGCGAAGGCCGGAGAGAGG+AGG + chr2_4:26932756-26932775 None:intergenic 65.0%
AGTGGTGTGCCGGGAGGCAA+TGG - chr2_4:26933425-26933444 Msa0323260:CDS 65.0%
GGCGGTCTAGGTGAGGTCCT+TGG - chr2_4:26934403-26934422 Msa0323260:intron 65.0%
!! CCGGCCATGGTGGATTGTGG+TGG - chr2_4:26935249-26935268 Msa0323260:CDS 65.0%
!! TGGCGGATGGCGGACAAAGG+TGG + chr2_4:26935332-26935351 None:intergenic 65.0%
CGGAAGCGAAGGCCGGAGAG+AGG + chr2_4:26932759-26932778 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 26932573 26938827 26932573 ID=Msa0323260;Name=Msa0323260
chr2_4 mRNA 26932573 26938827 26932573 ID=Msa0323260-mRNA-1;Parent=Msa0323260;Name=Msa0323260-mRNA-1;_AED=0.08;_eAED=0.08;_QI=148|0.9|1|1|1|1|11|517|577
chr2_4 exon 26932573 26933157 26932573 ID=Msa0323260-mRNA-1:exon:9430;Parent=Msa0323260-mRNA-1
chr2_4 exon 26933312 26933585 26933312 ID=Msa0323260-mRNA-1:exon:9429;Parent=Msa0323260-mRNA-1
chr2_4 exon 26933828 26934201 26933828 ID=Msa0323260-mRNA-1:exon:9428;Parent=Msa0323260-mRNA-1
chr2_4 exon 26934309 26934403 26934309 ID=Msa0323260-mRNA-1:exon:9427;Parent=Msa0323260-mRNA-1
chr2_4 exon 26934623 26934789 26934623 ID=Msa0323260-mRNA-1:exon:9426;Parent=Msa0323260-mRNA-1
chr2_4 exon 26934953 26935087 26934953 ID=Msa0323260-mRNA-1:exon:9425;Parent=Msa0323260-mRNA-1
chr2_4 exon 26935198 26935350 26935198 ID=Msa0323260-mRNA-1:exon:9424;Parent=Msa0323260-mRNA-1
chr2_4 exon 26935435 26935532 26935435 ID=Msa0323260-mRNA-1:exon:9423;Parent=Msa0323260-mRNA-1
chr2_4 exon 26936741 26936845 26936741 ID=Msa0323260-mRNA-1:exon:9422;Parent=Msa0323260-mRNA-1
chr2_4 exon 26936931 26937123 26936931 ID=Msa0323260-mRNA-1:exon:9421;Parent=Msa0323260-mRNA-1
chr2_4 exon 26938608 26938827 26938608 ID=Msa0323260-mRNA-1:exon:9420;Parent=Msa0323260-mRNA-1
chr2_4 five_prime_UTR 26938680 26938827 26938680 ID=Msa0323260-mRNA-1:five_prime_utr;Parent=Msa0323260-mRNA-1
chr2_4 CDS 26938608 26938679 26938608 ID=Msa0323260-mRNA-1:cds;Parent=Msa0323260-mRNA-1
chr2_4 CDS 26936931 26937123 26936931 ID=Msa0323260-mRNA-1:cds;Parent=Msa0323260-mRNA-1
chr2_4 CDS 26936741 26936845 26936741 ID=Msa0323260-mRNA-1:cds;Parent=Msa0323260-mRNA-1
chr2_4 CDS 26935435 26935532 26935435 ID=Msa0323260-mRNA-1:cds;Parent=Msa0323260-mRNA-1
chr2_4 CDS 26935198 26935350 26935198 ID=Msa0323260-mRNA-1:cds;Parent=Msa0323260-mRNA-1
chr2_4 CDS 26934953 26935087 26934953 ID=Msa0323260-mRNA-1:cds;Parent=Msa0323260-mRNA-1
chr2_4 CDS 26934623 26934789 26934623 ID=Msa0323260-mRNA-1:cds;Parent=Msa0323260-mRNA-1
chr2_4 CDS 26934309 26934403 26934309 ID=Msa0323260-mRNA-1:cds;Parent=Msa0323260-mRNA-1
chr2_4 CDS 26933828 26934201 26933828 ID=Msa0323260-mRNA-1:cds;Parent=Msa0323260-mRNA-1
chr2_4 CDS 26933312 26933585 26933312 ID=Msa0323260-mRNA-1:cds;Parent=Msa0323260-mRNA-1
chr2_4 CDS 26933090 26933157 26933090 ID=Msa0323260-mRNA-1:cds;Parent=Msa0323260-mRNA-1
chr2_4 three_prime_UTR 26932573 26933089 26932573 ID=Msa0323260-mRNA-1:three_prime_utr;Parent=Msa0323260-mRNA-1
Gene Sequence

>Msa0323260

ATGTTCTTCAGATTCTCGCTCCTCCTCCTTCTCCTCCTCTCTCCGGCCTTCGCTTCCGAGTCAGATCACAAGTACCAACCAGATGACCCAGTTACCCTTTGGGTCAACAAAGTAGGTCCGTACAATAATCCTCAAGAAACATATAATTATTACAGCCTGCCATTTTGCCGTCCACCTGGTAATACTGCTCACAAATGGGGCGGTCTAGGTGAGGTCCTTGGTGGCAACGAACTTATTGATAGCCAAATTGAGATAAAGTTTCTAGGGAATGTGGAAAGGACCACTTTTTGCCGTTTGAATCTTGACGAGGCAAAGGTTAAACAGTTCAAGGATGCAATTGAAAATAATTACTGGTTTGAATTCTTCATGGGGTATGTTGGGGAGCTACATCCTGACAAGAACAGTGATAGTGGCAAGCATGTCCTTTACACACACAAGAACATCATTGTTAAGTACAATACAGATCAGATCATTCATGTGAATCTCACTCATGATGACCCGAAACCTTTGGAAGCAGGAAGATCTTTGGACATGACATATTCTGTTAAATGGATTGCCACTAATGTCACTTTTAGACACCGGTTTGATGTATATCTGGACTATCCATTCTTTGAGCATCAGATTCATTGGTTCTCTATTTTTAACTCTTTTATGATGGTCATATTCCTAACTGGATTGGTGTCTATGATATTGATGCGAACTTTGAGAAATGACTATGCAAAGTATGCTCGGGAAGATGATGATTTGGAAACTCTGGAAAGAGACGTCAGTGAAGAATCTGGCTGGAAACTTGTGCATGGTGATGTTTTTCGGCCTCCTCGCAGTTTGGCTCTTCTTTCAGCTGTTGTTGGTACGGGTGCTCAGCTTGCGTTGTTGATTCTTCTTGTCATCTTGTTAGCTATTGTTGGGATGTTGTATGTTGACCGAGGAGCCATTGTCACAACATTCATTGTTTGTTATGCTCTCACGTCAGTCATTTCTGGTTATGTAAGTGGGGGGATGTACTCACGTAATGGGGGTAAAAGTTGGATTAAATCCATGATCCTTACAGCATCACTTTTCCCATTCCTGTGCTTTGGAATTGGATTCATCTTAAACACCGTGGCTATATTTTATGGATCTCTAGCAGCAATCCCCTTTGGTACAATGGTGGTTGTCTTTGTTATTTGGGCTTTCATCTCTTTCCCTCTTGCACTTCTTGGCACAGTTGTTGGAAGAAACTGGAGCGGTGCTCCAAATAATCCATGTCGTGTTAAGACCATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCCTCTGTAGTTTCTCTGATGGGTGGACTGCTTCCCTTTGGCAGCATATTCATTGAGATGTATTTTGTATTTACTTCCTTCTGGAATTACAAGGTGTACTATGTCTATGGCTTCATGCTACTGGTTTTTCTGATTCTCATTGTTGTTACAGTATGTGTGACAATTGTGGGGACATACTTTTTGTTAAATGCTGAGAACTACAATTGGCAATGGACTTCTTTTCTTTCAGCTGCATCAACAGGTGTTTATGTATATTTGTACTCGATATACTACTACTATGTGAAGACAAAGATGTCAGGCTTCTTCCAAACTAGCTTCTATTTTGGATACACTGCGATGTTTTGTCTTGGACTGGGAATTCTCTGTGGAGCTGTGGGTCATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACCGCAATATCAAGTGTGACTAA

Protein sequence

>Msa0323260

MFFRFSLLLLLLLSPAFASESDHKYQPDDPVTLWVNKVGPYNNPQETYNYYSLPFCRPPGNTAHKWGGLGEVLGGNELIDSQIEIKFLGNVERTTFCRLNLDEAKVKQFKDAIENNYWFEFFMGYVGELHPDKNSDSGKHVLYTHKNIIVKYNTDQIIHVNLTHDDPKPLEAGRSLDMTYSVKWIATNVTFRHRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLVHGDVFRPPRSLALLSAVVGTGAQLALLILLVILLAIVGMLYVDRGAIVTTFIVCYALTSVISGYVSGGMYSRNGGKSWIKSMILTASLFPFLCFGIGFILNTVAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSLMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILIVVTVCVTIVGTYFLLNAENYNWQWTSFLSAASTGVYVYLYSIYYYYVKTKMSGFFQTSFYFGYTAMFCLGLGILCGAVGHLGSNLFVRRIYRNIKCD*