AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1409950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1409950 MtrunA17_Chr3g0132251 86.692 263 5 2 1 233 1 263 5.19e-161 452
Msa1409950 MtrunA17_Chr2g0302261 85.171 263 9 2 1 233 1 263 4.86e-157 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1409950 AT1G05350.1 70.881 261 48 3 1 233 1 261 7.90e-127 365

Find 48 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTTAGGTTGTAGCATC+TGG 0.202498 tig0023577:+88778 Msa1409950:intron
AGCATATTGCTGATCTTGTT+AGG 0.273555 tig0023577:+85734 Msa1409950:intron
CACATTCAGTTACTTATTCC+TGG 0.301028 tig0023577:+88470 Msa1409950:intron
CAATCCGTACAGTCGGATTA+TGG 0.335528 tig0023577:+85903 Msa1409950:CDS
TCGAGAATTACGAACGGATA+AGG 0.369218 tig0023577:+85947 Msa1409950:CDS
CGAGAATTACGAACGGATAA+GGG 0.381220 tig0023577:+85948 Msa1409950:CDS
TGGAACTTGCAAACATGAAT+AGG 0.394992 tig0023577:+87066 Msa1409950:CDS
ACGCCGCTACCTTGTTTATC+AGG 0.395948 tig0023577:-87776 None:intergenic
ATTTGAGTGCTCACTTGATC+AGG 0.406505 tig0023577:-87101 None:intergenic
AGGAGGAGCGCATGCAAAAC+AGG 0.409772 tig0023577:-88501 None:intergenic
GCATATTGCTGATCTTGTTA+GGG 0.423394 tig0023577:+85735 Msa1409950:intron
CCTCTTAGGTTGTAGCATCT+GGG 0.433455 tig0023577:+88779 Msa1409950:intron
GAGATTAGTACATACAACTA+TGG 0.449162 tig0023577:-85983 None:intergenic
CTTATGTAATCACAGGGAAT+AGG 0.450628 tig0023577:+86966 Msa1409950:intron
TGTTCACCGCACAAAAGTTA+AGG 0.457928 tig0023577:+85765 Msa1409950:CDS
GATTATGGCGCTTCAGAGAA+TGG 0.465089 tig0023577:+85918 Msa1409950:CDS
GCATCGCGAAGAGATGGATC+TGG 0.478903 tig0023577:-85498 None:intergenic
GCAAAACAGGTCGTTTCTCC+AGG 0.484109 tig0023577:-88488 None:intergenic
CTTACCTCAAGCACAACATC+AGG 0.497931 tig0023577:-87567 None:intergenic
AGCAAGAATGGCTGTTAACC+AGG 0.499391 tig0023577:+87832 Msa1409950:CDS
TCACAGGGAATAGGTGGTGT+AGG 0.505634 tig0023577:+86975 Msa1409950:intron
ATTATGGCGCTTCAGAGAAT+GGG 0.513151 tig0023577:+85919 Msa1409950:CDS
TCTTCGCGATGCCTTCCATA+AGG 0.517666 tig0023577:+85509 Msa1409950:CDS
TTGATTGAGAGATTGAAGAT+CGG 0.528108 tig0023577:-85469 None:intergenic
TGGAAGGCATCGCGAAGAGA+TGG 0.537472 tig0023577:-85504 None:intergenic
CTGAATATCACAACAGTGGA+TGG 0.541895 tig0023577:+87710 Msa1409950:CDS
AGCGTACACTCAAGCGTGAA+GGG 0.545932 tig0023577:+88809 Msa1409950:CDS
AGATAATTACGAAGCAAGAA+TGG 0.547251 tig0023577:+87820 Msa1409950:CDS
ATGCTAACAAGATGTGGTAT+TGG 0.549949 tig0023577:+87014 Msa1409950:CDS
AGTACATACAACTATGGCTA+TGG 0.561645 tig0023577:-85977 None:intergenic
GTTGTATGATTATGACAAAG+TGG 0.585959 tig0023577:+87046 Msa1409950:CDS
AGCGCCATAATCCGACTGTA+CGG 0.587644 tig0023577:-85907 None:intergenic
TGATCAGGATATGAGTGTTG+AGG 0.597935 tig0023577:+85870 Msa1409950:intron
ATGTAATCACAGGGAATAGG+TGG 0.600616 tig0023577:+86969 Msa1409950:intron
AAATCCTGATGTTGTGCTTG+AGG 0.600789 tig0023577:+87563 Msa1409950:CDS
GAGCGTACACTCAAGCGTGA+AGG 0.602385 tig0023577:+88808 Msa1409950:CDS
CGCGAAGAGATGGATCTGGA+AGG 0.607082 tig0023577:-85494 None:intergenic
GCGAAGAGATGGATCTGGAA+GGG 0.607645 tig0023577:-85493 None:intergenic
AGGTGGAATTACCTTATGGA+AGG 0.613014 tig0023577:-85520 None:intergenic
CGTCCTGATAAACAAGGTAG+CGG 0.627116 tig0023577:+87773 Msa1409950:CDS
TAGACAGCAATCCGTACAGT+CGG 0.634600 tig0023577:+85896 Msa1409950:CDS
GCTGAGATGCTAACAAGATG+TGG 0.656177 tig0023577:+87008 Msa1409950:CDS
GCGTACACTCAAGCGTGAAG+GGG 0.678168 tig0023577:+88810 Msa1409950:CDS
TACACTGAATATCACAACAG+TGG 0.682172 tig0023577:+87706 Msa1409950:CDS
TCATTTCGTCCTGATAAACA+AGG 0.695210 tig0023577:+87767 Msa1409950:CDS
TGATAAACAAGGTAGCGGCG+TGG 0.703379 tig0023577:+87778 Msa1409950:CDS
TATCTACACAGCTTAAGACA+AGG 0.708377 tig0023577:-87802 None:intergenic
GAATTGTCGAGAATTACGAA+CGG 0.742836 tig0023577:+85941 Msa1409950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTTTTTTTTTTAGTATT+CGG + tig0023577:88266-88285 Msa1409950:intron 10.0%
!! ATATCACAAATTTAATTCTA+TGG - tig0023577:86031-86050 None:intergenic 15.0%
!!! TTTTTTTTAATGTTTACTCT+TGG + tig0023577:86127-86146 Msa1409950:intron 15.0%
!! ATTGAATTTCTAATTTAATC+TGG + tig0023577:86181-86200 Msa1409950:intron 15.0%
!! TTGAATTTCTAATTTAATCT+GGG + tig0023577:86182-86201 Msa1409950:intron 15.0%
!!! AAAAAATGTATACAACTTTT+TGG - tig0023577:87200-87219 None:intergenic 15.0%
!! AAAGATAAAATGCTTAAAAT+TGG + tig0023577:88029-88048 Msa1409950:intron 15.0%
!!! TCTGTTTTTTATTTGAAATT+GGG + tig0023577:88532-88551 Msa1409950:intron 15.0%
!!! AAAAAGAGTTTCTACTTTTT+AGG - tig0023577:86112-86131 None:intergenic 20.0%
!! AAAGCAACATACAAATTTAT+AGG - tig0023577:86309-86328 None:intergenic 20.0%
!! CTTTCGATTATGATTTAATT+TGG + tig0023577:86359-86378 Msa1409950:intron 20.0%
!! ATAAACTATTAAGAAAGATC+CGG + tig0023577:86659-86678 Msa1409950:intron 20.0%
!! ATATCTCCTTTATTAAATGT+GGG - tig0023577:86837-86856 None:intergenic 20.0%
!! TATATCTCCTTTATTAAATG+TGG - tig0023577:86838-86857 None:intergenic 20.0%
!!! TAGGTTTTTATTTCACATTT+TGG + tig0023577:86918-86937 Msa1409950:intron 20.0%
!! AATTTAAAAGACATAATGCT+TGG - tig0023577:87338-87357 None:intergenic 20.0%
!!! CATTATGTCTTTTAAATTGA+AGG + tig0023577:87340-87359 Msa1409950:intron 20.0%
!!! CAAAAAATACACTTTACTTT+TGG - tig0023577:87488-87507 None:intergenic 20.0%
!!! CAAAAGTAAAGTGTATTTTT+TGG + tig0023577:87486-87505 Msa1409950:intron 20.0%
!!! ATTTTTCAAAGATGACATAA+AGG - tig0023577:87744-87763 None:intergenic 20.0%
!! TACGTTAAATAATAAATACC+TGG - tig0023577:87853-87872 None:intergenic 20.0%
!!! GTCTGTTTTTTATTTGAAAT+TGG + tig0023577:88531-88550 Msa1409950:intron 20.0%
! ATAAAAAATGCATGCAGAAT+TGG - tig0023577:85578-85597 None:intergenic 25.0%
! GTTTATTCTATAGTTTATCC+AGG - tig0023577:86645-86664 None:intergenic 25.0%
!! ATTTATACTTCAGAGCATTT+AGG + tig0023577:86796-86815 Msa1409950:intron 25.0%
! TTACTTCCCACATTTAATAA+AGG + tig0023577:86828-86847 Msa1409950:intron 25.0%
! GTAATTCTTATGTAATCACA+GGG + tig0023577:86960-86979 Msa1409950:intron 25.0%
! ACAAACATTCGAAATTTGAT+CGG + tig0023577:87224-87243 Msa1409950:intron 25.0%
! ATGTCAATAAAGATGGTTAA+GGG - tig0023577:88055-88074 None:intergenic 25.0%
! ATTGTGAATTGTCTTAAAGA+AGG - tig0023577:88139-88158 None:intergenic 25.0%
!!! AACACCTGTTTGAATTTTTT+CGG - tig0023577:88429-88448 None:intergenic 25.0%
! ACAATAATATAGTCCACATA+TGG - tig0023577:88640-88659 None:intergenic 25.0%
! TTAATAGCAAACTATGTAAC+CGG + tig0023577:88666-88685 Msa1409950:intron 25.0%
!! ATGATTATGTTTTTCCTCTT+AGG + tig0023577:88765-88784 Msa1409950:intron 25.0%
TTGATTGAGAGATTGAAGAT+CGG - tig0023577:85472-85491 None:intergenic 30.0%
TGAATAATTGAGAAGAAGAG+AGG - tig0023577:85543-85562 None:intergenic 30.0%
! TAAGTACCTTAACTTTTGTG+CGG - tig0023577:85774-85793 None:intergenic 30.0%
GAGATTAGTACATACAACTA+TGG - tig0023577:85986-86005 None:intergenic 30.0%
ATTCTATGGCAAGAAAGTAA+AGG - tig0023577:86017-86036 None:intergenic 30.0%
!! CGCTTAATTTATTTTCGTGT+TGG - tig0023577:86454-86473 None:intergenic 30.0%
CACGAAAATAAATTAAGCGT+AGG + tig0023577:86455-86474 Msa1409950:intron 30.0%
AACACCTATAGTAGAAAAGA+TGG + tig0023577:86545-86564 Msa1409950:intron 30.0%
TAATGAGCTGGATAGAATTA+TGG + tig0023577:86686-86705 Msa1409950:intron 30.0%
! TGGTATATGATAGAGCATTA+TGG + tig0023577:86706-86725 Msa1409950:intron 30.0%
TCATACACACAAGTTTAACT+AGG - tig0023577:86756-86775 None:intergenic 30.0%
!! ATGCAGTTCTGACTATTTTA+GGG + tig0023577:86879-86898 Msa1409950:intron 30.0%
! TGGTAATAAGTTCTAACGTT+TGG + tig0023577:86938-86957 Msa1409950:intron 30.0%
GGTAATTCTTATGTAATCAC+AGG + tig0023577:86959-86978 Msa1409950:intron 30.0%
GTTGTATGATTATGACAAAG+TGG + tig0023577:87046-87065 Msa1409950:CDS 30.0%
TCTTGTCTTCAAAATAAGAG+CGG + tig0023577:87132-87151 Msa1409950:intron 30.0%
CGAAATTTGATCGGATATTA+TGG + tig0023577:87233-87252 Msa1409950:intron 30.0%
TGTGACAAATCTCACTTAAT+AGG + tig0023577:87270-87289 Msa1409950:intron 30.0%
CACTTAATAGGAGAAGAATT+TGG + tig0023577:87282-87301 Msa1409950:intron 30.0%
TTAATAGGAGAAGAATTTGG+TGG + tig0023577:87285-87304 Msa1409950:intron 30.0%
GCTGACTACATTATATATAC+AGG + tig0023577:87459-87478 Msa1409950:intron 30.0%
!!! AAGTGTATTTTTTGGCTTTC+AGG + tig0023577:87494-87513 Msa1409950:intron 30.0%
!! AAGCTCTAAATGAAGAGAAA+GGG - tig0023577:87686-87705 None:intergenic 30.0%
!! AAAGCTCTAAATGAAGAGAA+AGG - tig0023577:87687-87706 None:intergenic 30.0%
AGATAATTACGAAGCAAGAA+TGG + tig0023577:87820-87839 Msa1409950:CDS 30.0%
CATGTCAATAAAGATGGTTA+AGG - tig0023577:88056-88075 None:intergenic 30.0%
TATGCATTGCTTATTCTTGA+TGG + tig0023577:88360-88379 Msa1409950:intron 30.0%
TCATCCGAAAAAATTCAAAC+AGG + tig0023577:88422-88441 Msa1409950:intron 30.0%
ATAAAAAACAGACTTACCAG+AGG - tig0023577:88524-88543 None:intergenic 30.0%
GTTAATTAAATCCAATCCTG+AGG - tig0023577:88584-88603 None:intergenic 30.0%
TGCATACTACATCTAACTTA+CGG + tig0023577:88698-88717 Msa1409950:intron 30.0%
ATAATTGAGAAGAAGAGAGG+TGG - tig0023577:85540-85559 None:intergenic 35.0%
ATGCATGCAGAATTGGATTA+TGG - tig0023577:85571-85590 None:intergenic 35.0%
AGCATATTGCTGATCTTGTT+AGG + tig0023577:85734-85753 Msa1409950:intron 35.0%
GCATATTGCTGATCTTGTTA+GGG + tig0023577:85735-85754 Msa1409950:intron 35.0%
! TTGTTGTTACTGTGTTGATC+AGG + tig0023577:85855-85874 Msa1409950:intron 35.0%
GAATTGTCGAGAATTACGAA+CGG + tig0023577:85941-85960 Msa1409950:CDS 35.0%
AGTACATACAACTATGGCTA+TGG - tig0023577:85980-85999 None:intergenic 35.0%
CAAGAAAGTAAAGGTAGAAG+AGG - tig0023577:86008-86027 None:intergenic 35.0%
AAAGTAGAGCTATATGCCAT+TGG + tig0023577:86274-86293 Msa1409950:intron 35.0%
TTATAGGTCCACATATCCAA+TGG - tig0023577:86293-86312 None:intergenic 35.0%
TTTGGTAGAGAAGACTTTGT+TGG + tig0023577:86377-86396 Msa1409950:intron 35.0%
TATCCTTGGTCAAACTTGTA+TGG + tig0023577:86404-86423 Msa1409950:intron 35.0%
ATCCTTGGTCAAACTTGTAT+GGG + tig0023577:86405-86424 Msa1409950:intron 35.0%
GGATTTGTAGTAAGACTAGA+CGG + tig0023577:86476-86495 Msa1409950:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG + tig0023577:86548-86567 Msa1409950:intron 35.0%
! TCCACCATCTTTTCTACTAT+AGG - tig0023577:86552-86571 None:intergenic 35.0%
AAACTTGTGTGTATGATTGC+TGG + tig0023577:86760-86779 Msa1409950:intron 35.0%
AGATATAATCACACCAAGCT+AGG + tig0023577:86851-86870 Msa1409950:intron 35.0%
!! CATGCAGTTCTGACTATTTT+AGG + tig0023577:86878-86897 Msa1409950:intron 35.0%
! GGGTTTTCTACGAAATCTTT+AGG + tig0023577:86899-86918 Msa1409950:intron 35.0%
CTTATGTAATCACAGGGAAT+AGG + tig0023577:86966-86985 Msa1409950:intron 35.0%
ATGCTAACAAGATGTGGTAT+TGG + tig0023577:87014-87033 Msa1409950:CDS 35.0%
TGGAACTTGCAAACATGAAT+AGG + tig0023577:87066-87085 Msa1409950:CDS 35.0%
CTTGTCTTCAAAATAAGAGC+GGG + tig0023577:87133-87152 Msa1409950:intron 35.0%
AAAATAAGAGCGGGATATGA+TGG + tig0023577:87142-87161 Msa1409950:intron 35.0%
TTTGTAACATGGTAGGCATA+TGG - tig0023577:87627-87646 None:intergenic 35.0%
ATTCGTCTTTGTAACATGGT+AGG - tig0023577:87634-87653 None:intergenic 35.0%
CTAGATTCGTCTTTGTAACA+TGG - tig0023577:87638-87657 None:intergenic 35.0%
TACACTGAATATCACAACAG+TGG + tig0023577:87706-87725 Msa1409950:CDS 35.0%
TCATTTCGTCCTGATAAACA+AGG + tig0023577:87767-87786 Msa1409950:CDS 35.0%
TATCTACACAGCTTAAGACA+AGG - tig0023577:87805-87824 None:intergenic 35.0%
TCTGCACATGTCAATAAAGA+TGG - tig0023577:88062-88081 None:intergenic 35.0%
AGAGGAAGAAAACATTTGTC+AGG - tig0023577:88177-88196 None:intergenic 35.0%
CACATTCAGTTACTTATTCC+TGG + tig0023577:88470-88489 Msa1409950:intron 35.0%
GTATTGTTCACAATTGACAG+TGG + tig0023577:88554-88573 Msa1409950:intron 35.0%
TTCAGAATGTCATCCATATG+TGG + tig0023577:88624-88643 Msa1409950:intron 35.0%
GTAGTATGCATGAACATATC+CGG - tig0023577:88688-88707 None:intergenic 35.0%
ACATCTAACTTACGGACAAT+AGG + tig0023577:88706-88725 Msa1409950:intron 35.0%
AGGTGGAATTACCTTATGGA+AGG - tig0023577:85523-85542 None:intergenic 40.0%
AGAGAGGTGGAATTACCTTA+TGG - tig0023577:85527-85546 None:intergenic 40.0%
! TTAACTTTTGTGCGGTGAAC+AGG - tig0023577:85766-85785 None:intergenic 40.0%
TGTTCACCGCACAAAAGTTA+AGG + tig0023577:85765-85784 Msa1409950:CDS 40.0%
AGGTACTTACATTGTGCTTG+TGG + tig0023577:85785-85804 Msa1409950:intron 40.0%
TACTTACATTGTGCTTGTGG+TGG + tig0023577:85788-85807 Msa1409950:intron 40.0%
! TGATCAGGATATGAGTGTTG+AGG + tig0023577:85870-85889 Msa1409950:intron 40.0%
ATTATGGCGCTTCAGAGAAT+GGG + tig0023577:85919-85938 Msa1409950:CDS 40.0%
TCGAGAATTACGAACGGATA+AGG + tig0023577:85947-85966 Msa1409950:CDS 40.0%
CGAGAATTACGAACGGATAA+GGG + tig0023577:85948-85967 Msa1409950:CDS 40.0%
AACTGTTCACTCACTATCAC+TGG + tig0023577:86073-86092 Msa1409950:intron 40.0%
GCTATATGCCATTGGATATG+TGG + tig0023577:86282-86301 Msa1409950:intron 40.0%
ACTTGTATGGGACATAGTGT+TGG + tig0023577:86417-86436 Msa1409950:intron 40.0%
CTTGTATGGGACATAGTGTT+GGG + tig0023577:86418-86437 Msa1409950:intron 40.0%
ATTAGAGAGAGAGAGAGAGT+TGG + tig0023577:86519-86538 Msa1409950:intron 40.0%
TTAGAGAGAGAGAGAGAGTT+GGG + tig0023577:86520-86539 Msa1409950:intron 40.0%
!! AGATGGTGGAAACTAGACTT+AGG + tig0023577:86562-86581 Msa1409950:intron 40.0%
CTCTTGATCTGATCTACATG+CGG - tig0023577:86594-86613 None:intergenic 40.0%
CTATCCAGCTCATTAATCTC+CGG - tig0023577:86681-86700 None:intergenic 40.0%
!! CAAGTTTAACTAGGAGTACC+AGG - tig0023577:86747-86766 None:intergenic 40.0%
ATGTAATCACAGGGAATAGG+TGG + tig0023577:86969-86988 Msa1409950:intron 40.0%
ATTTGAGTGCTCACTTGATC+AGG - tig0023577:87104-87123 None:intergenic 40.0%
! ATAGGAGAAGAATTTGGTGG+TGG + tig0023577:87288-87307 Msa1409950:intron 40.0%
!!! GTATTTTTTGGCTTTCAGGC+TGG + tig0023577:87498-87517 Msa1409950:intron 40.0%
AAATCCTGATGTTGTGCTTG+AGG + tig0023577:87563-87582 Msa1409950:CDS 40.0%
CTGAATATCACAACAGTGGA+TGG + tig0023577:87710-87729 Msa1409950:CDS 40.0%
TGAACTGAGCCATACATAGA+TGG + tig0023577:87985-88004 Msa1409950:intron 40.0%
AGGTCTGGATACTTTCAAAG+AGG - tig0023577:88195-88214 None:intergenic 40.0%
TGCATCTGTGTACATTTAGC+TGG + tig0023577:88226-88245 Msa1409950:intron 40.0%
TTCGGTACTATGACTATCTC+AGG + tig0023577:88284-88303 Msa1409950:intron 40.0%
TCGGTACTATGACTATCTCA+GGG + tig0023577:88285-88304 Msa1409950:intron 40.0%
TTGTGCTTGTGCATTCTACT+AGG + tig0023577:88335-88354 Msa1409950:intron 40.0%
AATTCAAACAGGTGTTTCCG+AGG + tig0023577:88433-88452 Msa1409950:intron 40.0%
AAAAACAGACTTACCAGAGG+AGG - tig0023577:88521-88540 None:intergenic 40.0%
TAGACAGCAATCCGTACAGT+CGG + tig0023577:85896-85915 Msa1409950:CDS 45.0%
CAATCCGTACAGTCGGATTA+TGG + tig0023577:85903-85922 Msa1409950:CDS 45.0%
GATTATGGCGCTTCAGAGAA+TGG + tig0023577:85918-85937 Msa1409950:CDS 45.0%
GAAAGACGATATCGCAGCAA+TGG - tig0023577:86344-86363 None:intergenic 45.0%
ACTTTGTTGGCGAGTATCCT+TGG + tig0023577:86390-86409 Msa1409950:intron 45.0%
GTCCCATACAAGTTTGACCA+AGG - tig0023577:86410-86429 None:intergenic 45.0%
TAGAGAGAGAGAGAGAGTTG+GGG + tig0023577:86521-86540 Msa1409950:intron 45.0%
TGGTGGAAACTAGACTTAGG+TGG + tig0023577:86565-86584 Msa1409950:intron 45.0%
AGTCAAACCAGTAGATGCAG+AGG + tig0023577:86615-86634 Msa1409950:intron 45.0%
! AGGTTTTCCTCTGCATCTAC+TGG - tig0023577:86625-86644 None:intergenic 45.0%
AGTAGATGCAGAGGAAAACC+TGG + tig0023577:86624-86643 Msa1409950:intron 45.0%
AGATCCGGAGATTAATGAGC+TGG + tig0023577:86674-86693 Msa1409950:intron 45.0%
TGGCATCGTTTGATAAAGCC+TGG + tig0023577:86726-86745 Msa1409950:intron 45.0%
AACTGCATGTTCTCCTAGCT+TGG - tig0023577:86867-86886 None:intergenic 45.0%
GCTGAGATGCTAACAAGATG+TGG + tig0023577:87008-87027 Msa1409950:CDS 45.0%
CTTACCTCAAGCACAACATC+AGG - tig0023577:87570-87589 None:intergenic 45.0%
GCATATGGAATGAGTCACAG+AGG - tig0023577:87612-87631 None:intergenic 45.0%
CGTCCTGATAAACAAGGTAG+CGG + tig0023577:87773-87792 Msa1409950:CDS 45.0%
AGCAAGAATGGCTGTTAACC+AGG + tig0023577:87832-87851 Msa1409950:CDS 45.0%
TAACTTCCTATGCACACTGC+AGG + tig0023577:87955-87974 Msa1409950:intron 45.0%
AGCCATACATAGATGGAGTC+AGG + tig0023577:87992-88011 Msa1409950:intron 45.0%
CACCTGACTCCATCTATGTA+TGG - tig0023577:87997-88016 None:intergenic 45.0%
AGTATCCAGACCTTGACAAG+TGG + tig0023577:88202-88221 Msa1409950:intron 45.0%
ACAGATGCATCCACTTGTCA+AGG - tig0023577:88215-88234 None:intergenic 45.0%
AATTGACAGTGGAATGCCTC+AGG + tig0023577:88565-88584 Msa1409950:intron 45.0%
! TCCTCTTAGGTTGTAGCATC+TGG + tig0023577:88778-88797 Msa1409950:intron 45.0%
! CCTCTTAGGTTGTAGCATCT+GGG + tig0023577:88779-88798 Msa1409950:intron 45.0%
!!! AAATCTTATTTATTTATTTA+TGG + tig0023577:86234-86253 Msa1409950:intron 5.0%
GCGAAGAGATGGATCTGGAA+GGG - tig0023577:85496-85515 None:intergenic 50.0%
TCTTCGCGATGCCTTCCATA+AGG + tig0023577:85509-85528 Msa1409950:CDS 50.0%
AGCGCCATAATCCGACTGTA+CGG - tig0023577:85910-85929 None:intergenic 50.0%
TCACAGGGAATAGGTGGTGT+AGG + tig0023577:86975-86994 Msa1409950:intron 50.0%
! ACGCCGCTACCTTGTTTATC+AGG - tig0023577:87779-87798 None:intergenic 50.0%
! TGATAAACAAGGTAGCGGCG+TGG + tig0023577:87778-87797 Msa1409950:CDS 50.0%
TACAAGCCTGCAGTGTGCAT+AGG - tig0023577:87964-87983 None:intergenic 50.0%
TGCATCCACTTGTCAAGGTC+TGG - tig0023577:88210-88229 None:intergenic 50.0%
!! GTTTCCGAGGATGCTGTTTC+TGG + tig0023577:88446-88465 Msa1409950:intron 50.0%
GTGACCAGAAACAGCATCCT+CGG - tig0023577:88453-88472 None:intergenic 50.0%
GCAAAACAGGTCGTTTCTCC+AGG - tig0023577:88491-88510 None:intergenic 50.0%
ACAGTGGAATGCCTCAGGAT+TGG + tig0023577:88570-88589 Msa1409950:intron 50.0%
CCCAGATGCTACAACCTAAG+AGG - tig0023577:88782-88801 None:intergenic 50.0%
CGCGAAGAGATGGATCTGGA+AGG - tig0023577:85497-85516 None:intergenic 55.0%
GCATCGCGAAGAGATGGATC+TGG - tig0023577:85501-85520 None:intergenic 55.0%
!! TGGAAGGCATCGCGAAGAGA+TGG - tig0023577:85507-85526 None:intergenic 55.0%
! AGGAGGAGCGCATGCAAAAC+AGG - tig0023577:88504-88523 None:intergenic 55.0%
! TTTTGCATGCGCTCCTCCTC+TGG + tig0023577:88505-88524 Msa1409950:CDS 55.0%
GAGCGTACACTCAAGCGTGA+AGG + tig0023577:88808-88827 Msa1409950:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0023577 gene 85441 88831 85441 ID=Msa1409950;Name=Msa1409950
tig0023577 mRNA 85441 88831 85441 ID=Msa1409950-mRNA-1;Parent=Msa1409950;Name=Msa1409950-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.42|0.25|1|0.85|0.87|8|0|233
tig0023577 exon 85441 85530 85441 ID=Msa1409950-mRNA-1:exon:26295;Parent=Msa1409950-mRNA-1
tig0023577 exon 85736 85786 85736 ID=Msa1409950-mRNA-1:exon:26296;Parent=Msa1409950-mRNA-1
tig0023577 exon 85877 85990 85877 ID=Msa1409950-mRNA-1:exon:26297;Parent=Msa1409950-mRNA-1
tig0023577 exon 86981 87109 86981 ID=Msa1409950-mRNA-1:exon:26298;Parent=Msa1409950-mRNA-1
tig0023577 exon 87516 87584 87516 ID=Msa1409950-mRNA-1:exon:26299;Parent=Msa1409950-mRNA-1
tig0023577 exon 87701 87853 87701 ID=Msa1409950-mRNA-1:exon:26300;Parent=Msa1409950-mRNA-1
tig0023577 exon 88479 88526 88479 ID=Msa1409950-mRNA-1:exon:26301;Parent=Msa1409950-mRNA-1
tig0023577 exon 88787 88831 88787 ID=Msa1409950-mRNA-1:exon:26302;Parent=Msa1409950-mRNA-1
tig0023577 CDS 85441 85530 85441 ID=Msa1409950-mRNA-1:cds;Parent=Msa1409950-mRNA-1
tig0023577 CDS 85736 85786 85736 ID=Msa1409950-mRNA-1:cds;Parent=Msa1409950-mRNA-1
tig0023577 CDS 85877 85990 85877 ID=Msa1409950-mRNA-1:cds;Parent=Msa1409950-mRNA-1
tig0023577 CDS 86981 87109 86981 ID=Msa1409950-mRNA-1:cds;Parent=Msa1409950-mRNA-1
tig0023577 CDS 87516 87584 87516 ID=Msa1409950-mRNA-1:cds;Parent=Msa1409950-mRNA-1
tig0023577 CDS 87701 87853 87701 ID=Msa1409950-mRNA-1:cds;Parent=Msa1409950-mRNA-1
tig0023577 CDS 88479 88526 88479 ID=Msa1409950-mRNA-1:cds;Parent=Msa1409950-mRNA-1
tig0023577 CDS 88787 88831 88787 ID=Msa1409950-mRNA-1:cds;Parent=Msa1409950-mRNA-1
Gene Sequence

>Msa1409950

ATGGAGATCGAGCTCAATGACTTGATCACCGATCTTCAATCTCTCAATCAATCCCTTCCAGATCCATCTCTTCGCGATGCCTTCCATAAGCATATTGCTGATCTTGTTAGGGCTCAACCTGTTCACCGCACAAAAGTTAAGGATATGAGTGTTGAGGTTGTAGACAGCAATCCGTACAGTCGGATTATGGCGCTTCAGAGAATGGGAATTGTCGAGAATTACGAACGGATAAGGGATTTCTCCATAGCCATAGTTGGAATAGGTGGTGTAGGAAGTGTAGCTGCTGAGATGCTAACAAGATGTGGTATTGGTCGACTTTTGTTGTATGATTATGACAAAGTGGAACTTGCAAACATGAATAGGCTCTTCTTTCGTCCTGATCAAGCTGGTATGACAAAGACAGATGCAGCTGTACAAACACTTTCAGATATAAATCCTGATGTTGTGCTTGAGAGCTTTACACTGAATATCACAACAGTGGATGGTTTTGAAACCTTTATGTCATCTTTGAAAAATAAGTCATTTCGTCCTGATAAACAAGGTAGCGGCGTGGACCTTGTCTTAAGCTGTGTAGATAATTACGAAGCAAGAATGGCTGTTAACCAGTTACTTATTCCTGGAGAAACGACCTGTTTTGCATGCGCTCCTCCTCTGGTTGTAGCATCTGGGATTGATGAGCGTACACTCAAGCGTGAAGGG

Protein sequence

>Msa1409950

MEIELNDLITDLQSLNQSLPDPSLRDAFHKHIADLVRAQPVHRTKVKDMSVEVVDSNPYSRIMALQRMGIVENYERIRDFSIAIVGIGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPDQAGMTKTDAAVQTLSDINPDVVLESFTLNITTVDGFETFMSSLKNKSFRPDKQGSGVDLVLSCVDNYEARMAVNQLLIPGETTCFACAPPLVVASGIDERTLKREG