AlfalfaGEDB | Msa0609120

M. sativa cultivar zhongmu-4 / Msa0609120

KEGG: K02868
GO: GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00281.22

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609120	XP_004293968.1	99.448	181	1	0	1	181	1	181	1.12e-129	371

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609120	sp\|P46287\|RL11_MEDSA	99.448	181	1	0	1	181	1	181	1.78e-132	371

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001760	Msa0609120	0.807482	4.947294e-50	-8.615850e-47
Msa0003030	Msa0609120	0.801671	8.066907e-49	-8.615850e-47
Msa0037230	Msa0609120	0.803977	2.694498e-49	-8.615850e-47
Msa0071640	Msa0609120	0.815451	9.185470e-52	-8.615850e-47
Msa0079560	Msa0609120	0.804369	2.233362e-49	-8.615850e-47
Msa0086160	Msa0609120	0.802539	5.348635e-49	-8.615850e-47
Msa0602900	Msa0609120	0.830209	3.340878e-55	-8.615850e-47
Msa0605140	Msa0609120	0.800631	1.316564e-48	-8.615850e-47
Msa0605890	Msa0609120	0.843384	1.448477e-58	-8.615850e-47
Msa0609120	Msa0619230	0.836884	7.202929e-57	-8.615850e-47
Msa0609120	Msa0621190	0.832715	8.069226e-56	-8.615850e-47
Msa0609120	Msa0643960	0.831209	1.900583e-55	-8.615850e-47
Msa0609120	Msa0656450	0.853220	2.758926e-61	-8.615850e-47
Msa0609120	Msa0663400	0.802408	5.691646e-49	-8.615850e-47
Msa0609120	Msa0691760	0.900638	5.997995e-78	-8.615850e-47
Msa0609120	Msa0694400	0.826753	2.281947e-54	-8.615850e-47
Msa0609120	Msa0700370	0.815866	7.421792e-52	-8.615850e-47
Msa0609120	Msa0708630	0.838431	2.888423e-57	-8.615850e-47
Msa0609120	Msa0790450	0.836249	1.045165e-56	-8.615850e-47
Msa0609120	Msa0798590	0.805759	1.143096e-49	-8.615850e-47
Msa0609120	Msa0929700	0.850786	1.355711e-60	-8.615850e-47
Msa0609120	Msa0930360	0.809696	1.665451e-50	-8.615850e-47
Msa0609120	Msa0930790	0.819622	1.054485e-52	-8.615850e-47
Msa0609120	Msa0930890	0.832647	8.389000e-56	-8.615850e-47
Msa0609120	Msa1025220	0.811257	7.663095e-51	-8.615850e-47
Msa0609120	Msa1082050	0.828060	1.108776e-54	-8.615850e-47
Msa0609120	Msa1085850	0.832999	6.861573e-56	-8.615850e-47
Msa0609120	Msa1126690	0.831917	1.272091e-55	-8.615850e-47
Msa0609120	Msa1163320	0.801260	9.791269e-49	-8.615850e-47
Msa0609120	Msa1227350	0.845722	3.402305e-59	-8.615850e-47
Msa0609120	Msa1235950	0.828332	9.534147e-55	-8.615850e-47
Msa0609120	Msa1235980	0.829517	4.923913e-55	-8.615850e-47
Msa0609120	Msa1284800	0.816259	6.063885e-52	-8.615850e-47
Msa0609120	Msa1296090	0.839238	1.785608e-57	-8.615850e-47
Msa0609120	Msa1351020	0.839070	1.973631e-57	-8.615850e-47
Msa0609120	Msa1385480	0.831098	2.023563e-55	-8.615850e-47
Msa0609120	Msa1387750	0.813369	2.651013e-51	-8.615850e-47
Msa0609120	Msa1390760	0.839874	1.220440e-57	-8.615850e-47
Msa0609120	Msa1403520	0.809075	2.263360e-50	-8.615850e-47
Msa0609120	Msa1407550	0.863320	2.708085e-64	-8.615850e-47
Msa0609120	Msa1413570	0.856162	3.875062e-62	-8.615850e-47
Msa0609120	Msa1432310	0.854926	8.890517e-62	-8.615850e-47
Msa0609120	Msa1446510	0.871085	8.942294e-67	-8.615850e-47
Msa0609120	Msa1450560	0.837711	4.422905e-57	-8.615850e-47
Msa0609120	Msa1462580	0.841428	4.781490e-58	-8.615850e-47
Msa0609120	Msa1465700	0.830208	3.343244e-55	-8.615850e-47
Msa0132460	Msa0609120	0.837670	4.532882e-57	-8.615850e-47
Msa0167860	Msa0609120	0.826174	3.136026e-54	-8.615850e-47
Msa0168320	Msa0609120	0.813418	2.585937e-51	-8.615850e-47
Msa0182050	Msa0609120	0.837938	3.867870e-57	-8.615850e-47
Msa0182100	Msa0609120	0.872299	3.539406e-67	-8.615850e-47
Msa0183840	Msa0609120	0.809020	2.326054e-50	-8.615850e-47
Msa0188740	Msa0609120	0.826923	2.078196e-54	-8.615850e-47
Msa0192300	Msa0609120	0.834467	2.947292e-56	-8.615850e-47
Msa0195030	Msa0609120	0.810671	1.026563e-50	-8.615850e-47
Msa0237180	Msa0609120	0.816951	4.244427e-52	-8.615850e-47
Msa0371490	Msa0609120	0.859587	3.731013e-63	-8.615850e-47
Msa0373350	Msa0609120	0.842025	3.326172e-58	-8.615850e-47
Msa0376850	Msa0609120	0.859390	4.274347e-63	-8.615850e-47
Msa0377370	Msa0609120	0.817026	4.081754e-52	-8.615850e-47
Msa0377520	Msa0609120	0.812393	4.337549e-51	-8.615850e-47
Msa0378620	Msa0609120	-0.829417	5.209470e-55	-8.615850e-47
Msa0380590	Msa0609120	0.800037	1.738861e-48	-8.615850e-47
Msa0382670	Msa0609120	0.822981	1.770967e-53	-8.615850e-47
Msa0387290	Msa0609120	0.806163	9.398648e-50	-8.615850e-47
Msa0388520	Msa0609120	0.836999	6.733543e-57	-8.615850e-47
Msa0416470	Msa0609120	0.841989	3.400956e-58	-8.615850e-47
Msa0421920	Msa0609120	0.810044	1.401959e-50	-8.615850e-47
Msa0426940	Msa0609120	0.820555	6.447455e-53	-8.615850e-47
Msa0433060	Msa0609120	0.812157	4.882620e-51	-8.615850e-47
Msa0270160	Msa0609120	0.834869	2.335553e-56	-8.615850e-47
Msa0274940	Msa0609120	0.828462	8.871108e-55	-8.615850e-47
Msa0277600	Msa0609120	0.829272	5.648849e-55	-8.615850e-47
Msa0301250	Msa0609120	0.839942	1.171642e-57	-8.615850e-47
Msa0313060	Msa0609120	0.854115	1.526259e-61	-8.615850e-47
Msa0315430	Msa0609120	0.817710	2.863457e-52	-8.615850e-47
Msa0315660	Msa0609120	0.820105	8.174789e-53	-8.615850e-47
Msa0511760	Msa0609120	0.862863	3.749524e-64	-8.615850e-47
Msa0516830	Msa0609120	0.860223	2.399258e-63	-8.615850e-47
Msa0521730	Msa0609120	0.838225	3.262702e-57	-8.615850e-47
Msa0524680	Msa0609120	0.815855	7.465126e-52	-8.615850e-47
Msa0547920	Msa0609120	0.831942	1.254002e-55	-8.615850e-47
Msa0573550	Msa0609120	0.853350	2.532485e-61	-8.615850e-47
Msa0574780	Msa0609120	0.847414	1.173894e-59	-8.615850e-47
Msa0578010	Msa0609120	0.822085	2.860013e-53	-8.615850e-47
Msa0597240	Msa0609120	0.810180	1.310465e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609120	MtrunA17_Chr8g0355901	98.343	181	3	1	181	1	181	1.14e-132	369
Msa0609120	MtrunA17_Chr4g0041531	98.343	181	3	1	181	1	181	1.40e-132	368
Msa0609120	MtrunA17_Chr3g0078591	99.441	179	1	3	181	4	182	3.03e-132	367
Msa0609120	MtrunA17_Chr3g0078581	81.818	143	26	38	180	2	144	2.92e-84	244
Msa0609120	MtrunA17_Chr7g0264261	90.476	42	4	1	42	1	42	4.13e-19	78.2

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609120	AT2G42740.1	95.580	181	8	1	181	1	181	5.13e-129	360
Msa0609120	AT4G18730.1	95.028	181	9	1	181	1	181	2.23e-128	358
Msa0609120	AT3G58700.1	95.028	181	9	1	181	1	181	2.23e-128	358
Msa0609120	AT5G45775.2	95.028	181	9	1	181	1	181	2.23e-128	358
Msa0609120	AT5G45775.1	95.322	171	8	11	181	1	171	9.71e-121	338

Find 72 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTAATTATCAGTCAGATTT+TGG	0.109315	4_2:-56523617	Msa0609120:three_prime_UTR
GACCCTTCTACTGGTATTTA+TGG	0.148591	4_2:-56523879	Msa0609120:CDS
TTGCTTTGGCTTTGGTATTC+AGG	0.174953	4_2:-56524399	Msa0609120:CDS
CGACAAGGCAATGCAGCTTT+TGG	0.255810	4_2:-56524480	Msa0609120:CDS
TTCAGTGATACTGGTTGCTT+TGG	0.299214	4_2:-56524413	Msa0609120:CDS
TATTCAGGAGCATATTGATT+TGG	0.317273	4_2:-56524384	Msa0609120:CDS
TGAACCTTGATCTCCCTCAT+TGG	0.332362	4_2:+56525417	None:intergenic
ATGTGGTGAACATTTCATTA+TGG	0.333290	4_2:-56523437	Msa0609120:three_prime_UTR
ATTCAGGAGCATATTGATTT+GGG	0.344346	4_2:-56524383	Msa0609120:CDS
AGGAGGAACTTCAGTGATAC+TGG	0.352064	4_2:-56524422	Msa0609120:CDS
GAACCTTGATCTCCCTCATT+GGG	0.354507	4_2:+56525418	None:intergenic
ATTCCATAAATACCAGTAGA+AGG	0.360196	4_2:+56523876	None:intergenic
CAATTGCCTGGGATTTGTTA+AGG	0.361161	4_2:+56523715	None:intergenic
TTTGACCTGGAACCACTTCA+TGG	0.374960	4_2:+56523752	None:intergenic
TTCAACATTAGCAAATTCTC+TGG	0.377695	4_2:+56523384	None:intergenic
GATACTGGTTGCTTTGGCTT+TGG	0.383233	4_2:-56524407	Msa0609120:CDS
TGATGCCATGAAGTGGTTCC+AGG	0.388963	4_2:-56523757	Msa0609120:CDS
TGGGTTCGCCAGTTTCTTCT+CGG	0.418287	4_2:+56525437	None:intergenic
AGGTACACTGTGCGATCCTT+TGG	0.421779	4_2:-56524548	Msa0609120:CDS
CCGCAGCCGCAACACATCAA+TGG	0.423449	4_2:-56525463	Msa0609120:exon
AACTATAGTTTGGTCTCTCT+TGG	0.426898	4_2:-56523647	Msa0609120:three_prime_UTR
GGTGAAAACCTTAGCGGCTC+TGG	0.432764	4_2:+56525347	None:intergenic
GGAGTATTTAACACAGCTAT+AGG	0.434952	4_2:+56523541	None:intergenic
CGACGACCCACACGGTATCC+AGG	0.444850	4_2:+56523828	None:intergenic
AATGGCTTCCGAGAAGAAAC+TGG	0.445897	4_2:-56525445	Msa0609120:CDS
TTCTACTGGTATTTATGGAA+TGG	0.448616	4_2:-56523874	Msa0609120:CDS
CCATTGATGTGTTGCGGCTG+CGG	0.454853	4_2:+56525463	None:intergenic
CTCATTTCTTCTGATTCCAA+AGG	0.457634	4_2:+56524532	None:intergenic
AGTTTAACTAAACAATTGCC+TGG	0.470565	4_2:+56523703	None:intergenic
TTTGTTGTTCTGGAGCGCCC+TGG	0.479272	4_2:-56523846	Msa0609120:CDS
GGGCCTGTGATAAACGAAAC+TGG	0.480933	4_2:-56523413	Msa0609120:three_prime_UTR
TCCAGGTATGACCCTTCTAC+TGG	0.482968	4_2:-56523888	Msa0609120:intron
GCTGCGGCAGCAGAGATGAA+TGG	0.488968	4_2:+56525479	None:intergenic
ATTTCGAGTCAAGAATATAA+CGG	0.492151	4_2:+56523474	None:intergenic
TTGCCAGTTTCGTTTATCAC+AGG	0.494167	4_2:+56523410	None:intergenic
CAACACGGGCCTTGCATCTG+CGG	0.505355	4_2:+56523805	None:intergenic
GGAAAGTGGTTTAAAGGTGA+AGG	0.505796	4_2:-56524459	Msa0609120:CDS
AACATCTCCGTCGGTGAAAG+TGG	0.510140	4_2:-56525381	Msa0609120:CDS
GGGTCGTCGCCGCAGATGCA+AGG	0.511173	4_2:-56523814	Msa0609120:CDS
GGTGAACATTTCATTATGGC+GGG	0.520610	4_2:-56523433	Msa0609120:three_prime_UTR
GTGGTTCCAGGTCAAATATG+AGG	0.522922	4_2:-56523745	Msa0609120:CDS
GAACCCAATGAGGGAGATCA+AGG	0.532538	4_2:-56525421	Msa0609120:CDS
TAGGTGCTGGAACAACTTAG+TGG	0.535243	4_2:-56525244	Msa0609120:CDS
TCGTCTCACCAGAGCCGCTA+AGG	0.538952	4_2:-56525355	Msa0609120:intron
CGCAGATGCAAGGCCCGTGT+TGG	0.542392	4_2:-56523804	Msa0609120:CDS
AACTAACCTTTGGAGAACAC+TGG	0.544806	4_2:+56525214	None:intergenic
GTTTAACTAAACAATTGCCT+GGG	0.556618	4_2:+56523704	None:intergenic
ACTAACCTTTGGAGAACACT+GGG	0.563850	4_2:+56525215	None:intergenic
TGGCATCATCCTTCGTGACA+CGG	0.570122	4_2:+56523772	None:intergenic
CGGAAGCCATTGATGTGTTG+CGG	0.571620	4_2:+56525457	None:intergenic
TGGTGAACATTTCATTATGG+CGG	0.576665	4_2:-56523434	Msa0609120:three_prime_UTR
GAGCGCCCTGGATACCGTGT+GGG	0.587127	4_2:-56523834	Msa0609120:CDS
GCATGCTATGTTACTGTCAG+AGG	0.589351	4_2:-56524503	Msa0609120:CDS
CTCGTTCTTAACATCTCCGT+CGG	0.593456	4_2:-56525390	Msa0609120:CDS
TTCCATAAATACCAGTAGAA+GGG	0.597500	4_2:+56523877	None:intergenic
CACGGTGTTGAATTCCAACA+CGG	0.601715	4_2:+56523790	None:intergenic
CGAAGGATGATGCCATGAAG+TGG	0.606576	4_2:-56523764	Msa0609120:CDS
GGAGCGCCCTGGATACCGTG+TGG	0.607966	4_2:-56523835	Msa0609120:CDS
GACGACCCACACGGTATCCA+GGG	0.608386	4_2:+56523829	None:intergenic
AAGAAGGGTGAAAACCTTAG+CGG	0.609429	4_2:+56525341	None:intergenic
AGTGATCCTTAACAAATCCC+AGG	0.615373	4_2:-56523721	Msa0609120:CDS
TCACTCCCTCATATTTGACC+TGG	0.621443	4_2:+56523739	None:intergenic
TGGTTCCAGGTCAAATATGA+GGG	0.622773	4_2:-56523744	Msa0609120:CDS
TGTTACTGTCAGAGGCGACA+AGG	0.632733	4_2:-56524495	Msa0609120:CDS
CAAACCCCAGTGTTCTCCAA+AGG	0.636410	4_2:-56525220	Msa0609120:intron
GAAACTGGCGAACCCAATGA+GGG	0.640398	4_2:-56525430	Msa0609120:CDS
ACGATCTCCACTTTCACCGA+CGG	0.653039	4_2:+56525374	None:intergenic
ATCTGCGGCGACGACCCACA+CGG	0.666808	4_2:+56523820	None:intergenic
AGAAACTGGCGAACCCAATG+AGG	0.672801	4_2:-56525431	Msa0609120:CDS
ACGGTGTTGAATTCCAACAC+GGG	0.675200	4_2:+56523791	None:intergenic
AATTCAACACCGTGTCACGA+AGG	0.700404	4_2:-56523781	Msa0609120:CDS
CTAACCTTTGGAGAACACTG+GGG	0.723201	4_2:+56525216	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTACATGTTTATTTTTAT+AGG	-	chr4_2:56523763-56523782	Msa0609120:CDS	10.0%
!!!	ATAAACTTTATTATCAATTT+TGG	-	chr4_2:56523789-56523808	Msa0609120:CDS	10.0%
!!!	TAAACTTTATTATCAATTTT+GGG	-	chr4_2:56523790-56523809	Msa0609120:CDS	10.0%
!!	TATTATATAATCTTATAAAC+TGG	-	chr4_2:56524253-56524272	Msa0609120:intron	10.0%
!!!	ACAAATATTTTCAATTAATT+TGG	+	chr4_2:56524660-56524679	None:intergenic	10.0%
!!	TAAAATTATTGAAACATTAT+TGG	-	chr4_2:56524954-56524973	Msa0609120:intron	10.0%
!!!	AATTACATGTTTATTTTTAT+AGG	-	chr4_2:56523763-56523782	Msa0609120:CDS	10.0%
!!!	ATAAACTTTATTATCAATTT+TGG	-	chr4_2:56523789-56523808	Msa0609120:CDS	10.0%
!!!	TAAACTTTATTATCAATTTT+GGG	-	chr4_2:56523790-56523809	Msa0609120:CDS	10.0%
!!	TATTATATAATCTTATAAAC+TGG	-	chr4_2:56524253-56524272	Msa0609120:intron	10.0%
!!!	ACAAATATTTTCAATTAATT+TGG	+	chr4_2:56524660-56524679	None:intergenic	10.0%
!!	TAAAATTATTGAAACATTAT+TGG	-	chr4_2:56524954-56524973	Msa0609120:intron	10.0%
!!!	TTTTTTTTTTTTTGTGTTGT+AGG	-	chr4_2:56523624-56523643	Msa0609120:three_prime_UTR	15.0%
!!	AAAATAAATCCAAAAAAGAA+AGG	+	chr4_2:56524864-56524883	None:intergenic	15.0%
!!!	TTTTTTTTTTTTTGTGTTGT+AGG	-	chr4_2:56523624-56523643	Msa0609120:three_prime_UTR	15.0%
!!	AAAATAAATCCAAAAAAGAA+AGG	+	chr4_2:56524864-56524883	None:intergenic	15.0%
!!!	TTTTGTAGAAATTTATCACT+GGG	-	chr4_2:56523694-56523713	Msa0609120:exon	20.0%
!!	TTCAGACAAAAAAATTAACT+TGG	-	chr4_2:56523863-56523882	Msa0609120:CDS	20.0%
!!	TCAGACAAAAAAATTAACTT+GGG	-	chr4_2:56523864-56523883	Msa0609120:CDS	20.0%
!!!	TCTAATTTAGGGTTAATTAT+GGG	-	chr4_2:56523900-56523919	Msa0609120:intron	20.0%
!!!	TAGTTTGATTTTGTAGTTAT+TGG	-	chr4_2:56523991-56524010	Msa0609120:intron	20.0%
!!	AAAGAAATGAAAGATGTTTA+CGG	-	chr4_2:56524123-56524142	Msa0609120:intron	20.0%
!!	CATATAATATTGGATAAATG+TGG	-	chr4_2:56524280-56524299	Msa0609120:intron	20.0%
!!!	GAAATTTTATGATATGACAT+AGG	-	chr4_2:56524605-56524624	Msa0609120:intron	20.0%
!!!	ATAATAAAGTTTGCTCTATA+TGG	-	chr4_2:56524716-56524735	Msa0609120:intron	20.0%
!!	AAATTGCAAAAACAGATAAT+TGG	+	chr4_2:56524810-56524829	None:intergenic	20.0%
!!	TATTTATGTTATCTTGCTTT+AGG	-	chr4_2:56524888-56524907	Msa0609120:intron	20.0%
!!	TATGAAATCAAACATTTATG+AGG	+	chr4_2:56524922-56524941	None:intergenic	20.0%
!!!	AAATTGTTGACTTGTTTTAA+TGG	+	chr4_2:56525393-56525412	None:intergenic	20.0%
!!!	TTTTGTAGAAATTTATCACT+GGG	-	chr4_2:56523694-56523713	Msa0609120:exon	20.0%
!!	TTCAGACAAAAAAATTAACT+TGG	-	chr4_2:56523863-56523882	Msa0609120:CDS	20.0%
!!	TCAGACAAAAAAATTAACTT+GGG	-	chr4_2:56523864-56523883	Msa0609120:CDS	20.0%
!!!	TCTAATTTAGGGTTAATTAT+GGG	-	chr4_2:56523900-56523919	Msa0609120:intron	20.0%
!!!	TAGTTTGATTTTGTAGTTAT+TGG	-	chr4_2:56523991-56524010	Msa0609120:intron	20.0%
!!	AAAGAAATGAAAGATGTTTA+CGG	-	chr4_2:56524123-56524142	Msa0609120:intron	20.0%
!!	CATATAATATTGGATAAATG+TGG	-	chr4_2:56524280-56524299	Msa0609120:intron	20.0%
!!!	GAAATTTTATGATATGACAT+AGG	-	chr4_2:56524605-56524624	Msa0609120:intron	20.0%
!!!	ATAATAAAGTTTGCTCTATA+TGG	-	chr4_2:56524716-56524735	Msa0609120:intron	20.0%
!!	AAATTGCAAAAACAGATAAT+TGG	+	chr4_2:56524810-56524829	None:intergenic	20.0%
!!	TATTTATGTTATCTTGCTTT+AGG	-	chr4_2:56524888-56524907	Msa0609120:intron	20.0%
!!	TATGAAATCAAACATTTATG+AGG	+	chr4_2:56524922-56524941	None:intergenic	20.0%
!!!	AAATTGTTGACTTGTTTTAA+TGG	+	chr4_2:56525393-56525412	None:intergenic	20.0%
!	ATTTCTACAAAACTAACCTT+TGG	+	chr4_2:56523686-56523705	None:intergenic	25.0%
!!	GTTTTGTAGAAATTTATCAC+TGG	-	chr4_2:56523693-56523712	Msa0609120:exon	25.0%
!!	CAGACAAAAAAATTAACTTG+GGG	-	chr4_2:56523865-56523884	Msa0609120:CDS	25.0%
!	TTGGTATGTAGTCTAATTTA+GGG	-	chr4_2:56523889-56523908	Msa0609120:intron	25.0%
!!	GTCTAATTTAGGGTTAATTA+TGG	-	chr4_2:56523899-56523918	Msa0609120:intron	25.0%
!!	AATGTGAAAGCTTGATAATA+GGG	-	chr4_2:56523959-56523978	Msa0609120:intron	25.0%
!!!	TAGTTATTGGTAATGATGAA+AGG	-	chr4_2:56524004-56524023	Msa0609120:intron	25.0%
!!!	GTACATTAGATTTTTTAGCA+TGG	+	chr4_2:56524210-56524229	None:intergenic	25.0%
!	AACTGGCTATCATATAATAT+TGG	-	chr4_2:56524270-56524289	Msa0609120:intron	25.0%
!!	TTGTCAGAGATTAACATTTT+AGG	-	chr4_2:56524579-56524598	Msa0609120:intron	25.0%
!	TTTATTATTCCTTGCTTTGT+TGG	-	chr4_2:56524688-56524707	Msa0609120:intron	25.0%
!!!	AATGGATTTTTTTGTTGTTC+TGG	-	chr4_2:56525031-56525050	Msa0609120:intron	25.0%
!!	TAGTTAAACTGAGTTCTTTT+AGG	-	chr4_2:56525197-56525216	Msa0609120:intron	25.0%
!!	CTTAATTATCAGTCAGATTT+TGG	-	chr4_2:56525270-56525289	Msa0609120:intron	25.0%
!!	ATTTCGAGTCAAGAATATAA+CGG	+	chr4_2:56525416-56525435	None:intergenic	25.0%
!	AATGAAAAATGAGAACTATG+TGG	-	chr4_2:56525433-56525452	Msa0609120:CDS	25.0%
!	ATTTCTACAAAACTAACCTT+TGG	+	chr4_2:56523686-56523705	None:intergenic	25.0%
!!	GTTTTGTAGAAATTTATCAC+TGG	-	chr4_2:56523693-56523712	Msa0609120:exon	25.0%
!!	CAGACAAAAAAATTAACTTG+GGG	-	chr4_2:56523865-56523884	Msa0609120:CDS	25.0%
!	TTGGTATGTAGTCTAATTTA+GGG	-	chr4_2:56523889-56523908	Msa0609120:intron	25.0%
!!	GTCTAATTTAGGGTTAATTA+TGG	-	chr4_2:56523899-56523918	Msa0609120:intron	25.0%
!!	AATGTGAAAGCTTGATAATA+GGG	-	chr4_2:56523959-56523978	Msa0609120:intron	25.0%
!!!	TAGTTATTGGTAATGATGAA+AGG	-	chr4_2:56524004-56524023	Msa0609120:intron	25.0%
!!!	GTACATTAGATTTTTTAGCA+TGG	+	chr4_2:56524210-56524229	None:intergenic	25.0%
!	AACTGGCTATCATATAATAT+TGG	-	chr4_2:56524270-56524289	Msa0609120:intron	25.0%
!!	TTGTCAGAGATTAACATTTT+AGG	-	chr4_2:56524579-56524598	Msa0609120:intron	25.0%
!	TTTATTATTCCTTGCTTTGT+TGG	-	chr4_2:56524688-56524707	Msa0609120:intron	25.0%
!!!	AATGGATTTTTTTGTTGTTC+TGG	-	chr4_2:56525031-56525050	Msa0609120:intron	25.0%
!!	TAGTTAAACTGAGTTCTTTT+AGG	-	chr4_2:56525197-56525216	Msa0609120:intron	25.0%
!!	CTTAATTATCAGTCAGATTT+TGG	-	chr4_2:56525270-56525289	Msa0609120:intron	25.0%
!!	ATTTCGAGTCAAGAATATAA+CGG	+	chr4_2:56525416-56525435	None:intergenic	25.0%
!	AATGAAAAATGAGAACTATG+TGG	-	chr4_2:56525433-56525452	Msa0609120:CDS	25.0%
	CATTACACTTTCAAATCACT+AGG	+	chr4_2:56523840-56523859	None:intergenic	30.0%
!	AAAAAAATTAACTTGGGGCT+TGG	-	chr4_2:56523870-56523889	Msa0609120:CDS	30.0%
	CTTGGTATGTAGTCTAATTT+AGG	-	chr4_2:56523888-56523907	Msa0609120:intron	30.0%
!	CAATGTGAAAGCTTGATAAT+AGG	-	chr4_2:56523958-56523977	Msa0609120:intron	30.0%
	TGAACTTGTGACTAAAATTG+TGG	-	chr4_2:56524029-56524048	Msa0609120:intron	30.0%
	TTGTGACTAAAATTGTGGTA+AGG	-	chr4_2:56524034-56524053	Msa0609120:intron	30.0%
	AAATTGTGGTAAGGTTGTTA+CGG	-	chr4_2:56524043-56524062	Msa0609120:intron	30.0%
!	CATTTCTTTTCTTACATGTG+TGG	+	chr4_2:56524112-56524131	None:intergenic	30.0%
!!!	GATTTTTTAGCATGGAAACT+AGG	+	chr4_2:56524202-56524221	None:intergenic	30.0%
!	TATTCAGGAGCATATTGATT+TGG	-	chr4_2:56524503-56524522	Msa0609120:CDS	30.0%
!!	ATTCAGGAGCATATTGATTT+GGG	-	chr4_2:56524504-56524523	Msa0609120:CDS	30.0%
	AAATCCAAAAAAGAAAGGCA+TGG	+	chr4_2:56524859-56524878	None:intergenic	30.0%
	TTCCATAAATACCAGTAGAA+GGG	+	chr4_2:56525013-56525032	None:intergenic	30.0%
	ATTCCATAAATACCAGTAGA+AGG	+	chr4_2:56525014-56525033	None:intergenic	30.0%
	TTCTACTGGTATTTATGGAA+TGG	-	chr4_2:56525013-56525032	Msa0609120:intron	30.0%
	GTTTAACTAAACAATTGCCT+GGG	+	chr4_2:56525186-56525205	None:intergenic	30.0%
	AGTTTAACTAAACAATTGCC+TGG	+	chr4_2:56525187-56525206	None:intergenic	30.0%
!	TAGGATTATGTTACCGTTTT+TGG	-	chr4_2:56525216-56525235	Msa0609120:intron	30.0%
	CAAACTATAGTTGCCAAAAA+CGG	+	chr4_2:56525232-56525251	None:intergenic	30.0%
	AGGTTCAAAAAACTTAGCAT+AGG	+	chr4_2:56525370-56525389	None:intergenic	30.0%
!!!	TTGTTGACTTGTTTTAATGG+AGG	+	chr4_2:56525390-56525409	None:intergenic	30.0%
	ATGTGGTGAACATTTCATTA+TGG	-	chr4_2:56525450-56525469	Msa0609120:exon	30.0%
	CATTACACTTTCAAATCACT+AGG	+	chr4_2:56523840-56523859	None:intergenic	30.0%
!	AAAAAAATTAACTTGGGGCT+TGG	-	chr4_2:56523870-56523889	Msa0609120:CDS	30.0%
	CTTGGTATGTAGTCTAATTT+AGG	-	chr4_2:56523888-56523907	Msa0609120:intron	30.0%
!	CAATGTGAAAGCTTGATAAT+AGG	-	chr4_2:56523958-56523977	Msa0609120:intron	30.0%
	TGAACTTGTGACTAAAATTG+TGG	-	chr4_2:56524029-56524048	Msa0609120:intron	30.0%
	TTGTGACTAAAATTGTGGTA+AGG	-	chr4_2:56524034-56524053	Msa0609120:intron	30.0%
	AAATTGTGGTAAGGTTGTTA+CGG	-	chr4_2:56524043-56524062	Msa0609120:intron	30.0%
!	CATTTCTTTTCTTACATGTG+TGG	+	chr4_2:56524112-56524131	None:intergenic	30.0%
!!!	GATTTTTTAGCATGGAAACT+AGG	+	chr4_2:56524202-56524221	None:intergenic	30.0%
!	TATTCAGGAGCATATTGATT+TGG	-	chr4_2:56524503-56524522	Msa0609120:CDS	30.0%
!!	ATTCAGGAGCATATTGATTT+GGG	-	chr4_2:56524504-56524523	Msa0609120:CDS	30.0%
	AAATCCAAAAAAGAAAGGCA+TGG	+	chr4_2:56524859-56524878	None:intergenic	30.0%
	TTCCATAAATACCAGTAGAA+GGG	+	chr4_2:56525013-56525032	None:intergenic	30.0%
	ATTCCATAAATACCAGTAGA+AGG	+	chr4_2:56525014-56525033	None:intergenic	30.0%
	TTCTACTGGTATTTATGGAA+TGG	-	chr4_2:56525013-56525032	Msa0609120:intron	30.0%
	GTTTAACTAAACAATTGCCT+GGG	+	chr4_2:56525186-56525205	None:intergenic	30.0%
	AGTTTAACTAAACAATTGCC+TGG	+	chr4_2:56525187-56525206	None:intergenic	30.0%
!	TAGGATTATGTTACCGTTTT+TGG	-	chr4_2:56525216-56525235	Msa0609120:intron	30.0%
	CAAACTATAGTTGCCAAAAA+CGG	+	chr4_2:56525232-56525251	None:intergenic	30.0%
	AGGTTCAAAAAACTTAGCAT+AGG	+	chr4_2:56525370-56525389	None:intergenic	30.0%
!!!	TTGTTGACTTGTTTTAATGG+AGG	+	chr4_2:56525390-56525409	None:intergenic	30.0%
	ATGTGGTGAACATTTCATTA+TGG	-	chr4_2:56525450-56525469	Msa0609120:exon	30.0%
!!!	TTTTTTTGTGTTGTAGGTGC+TGG	-	chr4_2:56523630-56523649	Msa0609120:three_prime_UTR	35.0%
!!	TGGTAATGAGTGTGGATTTT+AGG	-	chr4_2:56523731-56523750	Msa0609120:CDS	35.0%
!	GGTAATGAGTGTGGATTTTA+GGG	-	chr4_2:56523732-56523751	Msa0609120:CDS	35.0%
	AATTGTGGTAAGGTTGTTAC+GGG	-	chr4_2:56524044-56524063	Msa0609120:intron	35.0%
!	TCCTTTGAATTTTTACAGCG+AGG	-	chr4_2:56524319-56524338	Msa0609120:intron	35.0%
	ACCTCGCTGTAAAAATTCAA+AGG	+	chr4_2:56524323-56524342	None:intergenic	35.0%
	CTCATTTCTTCTGATTCCAA+AGG	+	chr4_2:56524358-56524377	None:intergenic	35.0%
!!	GCTTTTGGAAAGTGGTTTAA+AGG	-	chr4_2:56524422-56524441	Msa0609120:CDS	35.0%
!!	TGAAGGAGTATGAACTTTTG+AGG	-	chr4_2:56524445-56524464	Msa0609120:CDS	35.0%
	GTAAGCTTAAGAACAACTCT+TGG	-	chr4_2:56524533-56524552	Msa0609120:CDS	35.0%
!	CAGAGATTAACATTTTAGGC+AGG	-	chr4_2:56524583-56524602	Msa0609120:intron	35.0%
	TTATATGCACCAACAAAGCA+AGG	+	chr4_2:56524700-56524719	None:intergenic	35.0%
!!!	ACTTCCATGCCTTTCTTTTT+TGG	-	chr4_2:56524852-56524871	Msa0609120:intron	35.0%
!!!	CGTTTTTGGCAACTATAGTT+TGG	-	chr4_2:56525230-56525249	Msa0609120:CDS	35.0%
	AACTATAGTTTGGTCTCTCT+TGG	-	chr4_2:56525240-56525259	Msa0609120:CDS	35.0%
!!	TTGTTTTATGACGAAGCACA+TGG	-	chr4_2:56525319-56525338	Msa0609120:intron	35.0%
!	TGTTTTATGACGAAGCACAT+GGG	-	chr4_2:56525320-56525339	Msa0609120:intron	35.0%
!	GGAGTATTTAACACAGCTAT+AGG	+	chr4_2:56525349-56525368	None:intergenic	35.0%
	TGGTGAACATTTCATTATGG+CGG	-	chr4_2:56525453-56525472	Msa0609120:exon	35.0%
!!!	TTTTTTTGTGTTGTAGGTGC+TGG	-	chr4_2:56523630-56523649	Msa0609120:three_prime_UTR	35.0%
!!	TGGTAATGAGTGTGGATTTT+AGG	-	chr4_2:56523731-56523750	Msa0609120:CDS	35.0%
!	GGTAATGAGTGTGGATTTTA+GGG	-	chr4_2:56523732-56523751	Msa0609120:CDS	35.0%
	AATTGTGGTAAGGTTGTTAC+GGG	-	chr4_2:56524044-56524063	Msa0609120:intron	35.0%
!	TCCTTTGAATTTTTACAGCG+AGG	-	chr4_2:56524319-56524338	Msa0609120:intron	35.0%
	ACCTCGCTGTAAAAATTCAA+AGG	+	chr4_2:56524323-56524342	None:intergenic	35.0%
	CTCATTTCTTCTGATTCCAA+AGG	+	chr4_2:56524358-56524377	None:intergenic	35.0%
!!	GCTTTTGGAAAGTGGTTTAA+AGG	-	chr4_2:56524422-56524441	Msa0609120:CDS	35.0%
!!	TGAAGGAGTATGAACTTTTG+AGG	-	chr4_2:56524445-56524464	Msa0609120:CDS	35.0%
	GTAAGCTTAAGAACAACTCT+TGG	-	chr4_2:56524533-56524552	Msa0609120:CDS	35.0%
!	CAGAGATTAACATTTTAGGC+AGG	-	chr4_2:56524583-56524602	Msa0609120:intron	35.0%
	TTATATGCACCAACAAAGCA+AGG	+	chr4_2:56524700-56524719	None:intergenic	35.0%
!!!	ACTTCCATGCCTTTCTTTTT+TGG	-	chr4_2:56524852-56524871	Msa0609120:intron	35.0%
!!!	CGTTTTTGGCAACTATAGTT+TGG	-	chr4_2:56525230-56525249	Msa0609120:CDS	35.0%
	AACTATAGTTTGGTCTCTCT+TGG	-	chr4_2:56525240-56525259	Msa0609120:CDS	35.0%
!!	TTGTTTTATGACGAAGCACA+TGG	-	chr4_2:56525319-56525338	Msa0609120:intron	35.0%
!	TGTTTTATGACGAAGCACAT+GGG	-	chr4_2:56525320-56525339	Msa0609120:intron	35.0%
!	GGAGTATTTAACACAGCTAT+AGG	+	chr4_2:56525349-56525368	None:intergenic	35.0%
	TGGTGAACATTTCATTATGG+CGG	-	chr4_2:56525453-56525472	Msa0609120:exon	35.0%
	AAGAAGGGTGAAAACCTTAG+CGG	+	chr4_2:56523549-56523568	None:intergenic	40.0%
!	ACTAACCTTTGGAGAACACT+GGG	+	chr4_2:56523675-56523694	None:intergenic	40.0%
!	AACTAACCTTTGGAGAACAC+TGG	+	chr4_2:56523676-56523695	None:intergenic	40.0%
	ACTGGGTTCTTATGTAATGC+TGG	-	chr4_2:56523711-56523730	Msa0609120:CDS	40.0%
!	TGTAATGCTGGTAATGAGTG+TGG	-	chr4_2:56523723-56523742	Msa0609120:CDS	40.0%
	GGAAAGTGGTTTAAAGGTGA+AGG	-	chr4_2:56524428-56524447	Msa0609120:CDS	40.0%
!!	AGGAGTATGAACTTTTGAGG+AGG	-	chr4_2:56524448-56524467	Msa0609120:CDS	40.0%
!	TTCAGTGATACTGGTTGCTT+TGG	-	chr4_2:56524474-56524493	Msa0609120:CDS	40.0%
!!	TTGCTTTGGCTTTGGTATTC+AGG	-	chr4_2:56524488-56524507	Msa0609120:CDS	40.0%
	TGACATAGGTTGTGTACTTG+TGG	-	chr4_2:56524619-56524638	Msa0609120:intron	40.0%
!	GTTTGCTCTATATGGTCTTG+AGG	-	chr4_2:56524724-56524743	Msa0609120:intron	40.0%
!	CTATATGGTCTTGAGGAACA+AGG	-	chr4_2:56524731-56524750	Msa0609120:intron	40.0%
	TGAGGAACAAGGACTTATGT+AGG	-	chr4_2:56524742-56524761	Msa0609120:intron	40.0%
	AACAAGGACTTATGTAGGCT+AGG	-	chr4_2:56524747-56524766	Msa0609120:intron	40.0%
	GACCCTTCTACTGGTATTTA+TGG	-	chr4_2:56525008-56525027	Msa0609120:intron	40.0%
	TGGTTCCAGGTCAAATATGA+GGG	-	chr4_2:56525143-56525162	Msa0609120:intron	40.0%
	AGTGATCCTTAACAAATCCC+AGG	-	chr4_2:56525166-56525185	Msa0609120:intron	40.0%
!!	CAATTGCCTGGGATTTGTTA+AGG	+	chr4_2:56525175-56525194	None:intergenic	40.0%
	GGTGAACATTTCATTATGGC+GGG	-	chr4_2:56525454-56525473	Msa0609120:exon	40.0%
	TTGCCAGTTTCGTTTATCAC+AGG	+	chr4_2:56525480-56525499	None:intergenic	40.0%
	AAGAAGGGTGAAAACCTTAG+CGG	+	chr4_2:56523549-56523568	None:intergenic	40.0%
!	ACTAACCTTTGGAGAACACT+GGG	+	chr4_2:56523675-56523694	None:intergenic	40.0%
!	AACTAACCTTTGGAGAACAC+TGG	+	chr4_2:56523676-56523695	None:intergenic	40.0%
	ACTGGGTTCTTATGTAATGC+TGG	-	chr4_2:56523711-56523730	Msa0609120:CDS	40.0%
!	TGTAATGCTGGTAATGAGTG+TGG	-	chr4_2:56523723-56523742	Msa0609120:CDS	40.0%
	GGAAAGTGGTTTAAAGGTGA+AGG	-	chr4_2:56524428-56524447	Msa0609120:CDS	40.0%
!!	AGGAGTATGAACTTTTGAGG+AGG	-	chr4_2:56524448-56524467	Msa0609120:CDS	40.0%
!	TTCAGTGATACTGGTTGCTT+TGG	-	chr4_2:56524474-56524493	Msa0609120:CDS	40.0%
!!	TTGCTTTGGCTTTGGTATTC+AGG	-	chr4_2:56524488-56524507	Msa0609120:CDS	40.0%
	TGACATAGGTTGTGTACTTG+TGG	-	chr4_2:56524619-56524638	Msa0609120:intron	40.0%
!	GTTTGCTCTATATGGTCTTG+AGG	-	chr4_2:56524724-56524743	Msa0609120:intron	40.0%
!	CTATATGGTCTTGAGGAACA+AGG	-	chr4_2:56524731-56524750	Msa0609120:intron	40.0%
	TGAGGAACAAGGACTTATGT+AGG	-	chr4_2:56524742-56524761	Msa0609120:intron	40.0%
	AACAAGGACTTATGTAGGCT+AGG	-	chr4_2:56524747-56524766	Msa0609120:intron	40.0%
	GACCCTTCTACTGGTATTTA+TGG	-	chr4_2:56525008-56525027	Msa0609120:intron	40.0%
	TGGTTCCAGGTCAAATATGA+GGG	-	chr4_2:56525143-56525162	Msa0609120:intron	40.0%
	AGTGATCCTTAACAAATCCC+AGG	-	chr4_2:56525166-56525185	Msa0609120:intron	40.0%
!!	CAATTGCCTGGGATTTGTTA+AGG	+	chr4_2:56525175-56525194	None:intergenic	40.0%
	GGTGAACATTTCATTATGGC+GGG	-	chr4_2:56525454-56525473	Msa0609120:exon	40.0%
	TTGCCAGTTTCGTTTATCAC+AGG	+	chr4_2:56525480-56525499	None:intergenic	40.0%
	AATGGCTTCCGAGAAGAAAC+TGG	-	chr4_2:56523442-56523461	Msa0609120:three_prime_UTR	45.0%
	GAACCTTGATCTCCCTCATT+GGG	+	chr4_2:56523472-56523491	None:intergenic	45.0%
	TGAACCTTGATCTCCCTCAT+TGG	+	chr4_2:56523473-56523492	None:intergenic	45.0%
	CTCGTTCTTAACATCTCCGT+CGG	-	chr4_2:56523497-56523516	Msa0609120:three_prime_UTR	45.0%
!	GTTTTCACCCTTCTTCTCAC+TGG	-	chr4_2:56523554-56523573	Msa0609120:three_prime_UTR	45.0%
	CTCAGATCCAGTGAGAAGAA+GGG	+	chr4_2:56523564-56523583	None:intergenic	45.0%
	ACTCAGATCCAGTGAGAAGA+AGG	+	chr4_2:56523565-56523584	None:intergenic	45.0%
!!	TAGGTGCTGGAACAACTTAG+TGG	-	chr4_2:56523643-56523662	Msa0609120:three_prime_UTR	45.0%
!	CTAACCTTTGGAGAACACTG+GGG	+	chr4_2:56523674-56523693	None:intergenic	45.0%
	AAGGTTGTTACGGGTCTTAG+AGG	-	chr4_2:56524053-56524072	Msa0609120:intron	45.0%
	GTTACGGGTCTTAGAGGAAT+AGG	-	chr4_2:56524059-56524078	Msa0609120:intron	45.0%
!	GTTTACGGTCTTCGACTTGT+CGG	-	chr4_2:56524138-56524157	Msa0609120:intron	45.0%
!	GTCGGTGTACTTGAGCATTT+TGG	-	chr4_2:56524156-56524175	Msa0609120:intron	45.0%
	GCATGCTATGTTACTGTCAG+AGG	-	chr4_2:56524384-56524403	Msa0609120:CDS	45.0%
!!	GCAATGCAGCTTTTGGAAAG+TGG	-	chr4_2:56524414-56524433	Msa0609120:CDS	45.0%
	AGGAGGAACTTCAGTGATAC+TGG	-	chr4_2:56524465-56524484	Msa0609120:CDS	45.0%
!	GATACTGGTTGCTTTGGCTT+TGG	-	chr4_2:56524480-56524499	Msa0609120:CDS	45.0%
	GAGCAGATTGTCAAGCATCA+GGG	+	chr4_2:56524981-56525000	None:intergenic	45.0%
!	ACGGTGTTGAATTCCAACAC+GGG	+	chr4_2:56525099-56525118	None:intergenic	45.0%
!	CACGGTGTTGAATTCCAACA+CGG	+	chr4_2:56525100-56525119	None:intergenic	45.0%
	AATTCAACACCGTGTCACGA+AGG	-	chr4_2:56525106-56525125	Msa0609120:intron	45.0%
	TTTGACCTGGAACCACTTCA+TGG	+	chr4_2:56525138-56525157	None:intergenic	45.0%
	GTGGTTCCAGGTCAAATATG+AGG	-	chr4_2:56525142-56525161	Msa0609120:intron	45.0%
	TCACTCCCTCATATTTGACC+TGG	+	chr4_2:56525151-56525170	None:intergenic	45.0%
	GGCAATCTCCAGAGAATTTG+CGG	-	chr4_2:56525495-56525514	Msa0609120:five_prime_UTR	45.0%
	GCAATCTCCAGAGAATTTGC+GGG	-	chr4_2:56525496-56525515	Msa0609120:five_prime_UTR	45.0%
	AATGGCTTCCGAGAAGAAAC+TGG	-	chr4_2:56523442-56523461	Msa0609120:three_prime_UTR	45.0%
	GAACCTTGATCTCCCTCATT+GGG	+	chr4_2:56523472-56523491	None:intergenic	45.0%
	TGAACCTTGATCTCCCTCAT+TGG	+	chr4_2:56523473-56523492	None:intergenic	45.0%
	CTCGTTCTTAACATCTCCGT+CGG	-	chr4_2:56523497-56523516	Msa0609120:three_prime_UTR	45.0%
!	GTTTTCACCCTTCTTCTCAC+TGG	-	chr4_2:56523554-56523573	Msa0609120:three_prime_UTR	45.0%
	CTCAGATCCAGTGAGAAGAA+GGG	+	chr4_2:56523564-56523583	None:intergenic	45.0%
	ACTCAGATCCAGTGAGAAGA+AGG	+	chr4_2:56523565-56523584	None:intergenic	45.0%
!!	TAGGTGCTGGAACAACTTAG+TGG	-	chr4_2:56523643-56523662	Msa0609120:three_prime_UTR	45.0%
!	CTAACCTTTGGAGAACACTG+GGG	+	chr4_2:56523674-56523693	None:intergenic	45.0%
	AAGGTTGTTACGGGTCTTAG+AGG	-	chr4_2:56524053-56524072	Msa0609120:intron	45.0%
	GTTACGGGTCTTAGAGGAAT+AGG	-	chr4_2:56524059-56524078	Msa0609120:intron	45.0%
!	GTTTACGGTCTTCGACTTGT+CGG	-	chr4_2:56524138-56524157	Msa0609120:intron	45.0%
!	GTCGGTGTACTTGAGCATTT+TGG	-	chr4_2:56524156-56524175	Msa0609120:intron	45.0%
	GCATGCTATGTTACTGTCAG+AGG	-	chr4_2:56524384-56524403	Msa0609120:CDS	45.0%
!!	GCAATGCAGCTTTTGGAAAG+TGG	-	chr4_2:56524414-56524433	Msa0609120:CDS	45.0%
	AGGAGGAACTTCAGTGATAC+TGG	-	chr4_2:56524465-56524484	Msa0609120:CDS	45.0%
!	GATACTGGTTGCTTTGGCTT+TGG	-	chr4_2:56524480-56524499	Msa0609120:CDS	45.0%
	GAGCAGATTGTCAAGCATCA+GGG	+	chr4_2:56524981-56525000	None:intergenic	45.0%
!	ACGGTGTTGAATTCCAACAC+GGG	+	chr4_2:56525099-56525118	None:intergenic	45.0%
!	CACGGTGTTGAATTCCAACA+CGG	+	chr4_2:56525100-56525119	None:intergenic	45.0%
	AATTCAACACCGTGTCACGA+AGG	-	chr4_2:56525106-56525125	Msa0609120:intron	45.0%
	TTTGACCTGGAACCACTTCA+TGG	+	chr4_2:56525138-56525157	None:intergenic	45.0%
	GTGGTTCCAGGTCAAATATG+AGG	-	chr4_2:56525142-56525161	Msa0609120:intron	45.0%
	TCACTCCCTCATATTTGACC+TGG	+	chr4_2:56525151-56525170	None:intergenic	45.0%
	CGGAAGCCATTGATGTGTTG+CGG	+	chr4_2:56523433-56523452	None:intergenic	50.0%
	TGGGTTCGCCAGTTTCTTCT+CGG	+	chr4_2:56523453-56523472	None:intergenic	50.0%
	AGAAACTGGCGAACCCAATG+AGG	-	chr4_2:56523456-56523475	Msa0609120:three_prime_UTR	50.0%
	GAAACTGGCGAACCCAATGA+GGG	-	chr4_2:56523457-56523476	Msa0609120:three_prime_UTR	50.0%
	GAACCCAATGAGGGAGATCA+AGG	-	chr4_2:56523466-56523485	Msa0609120:three_prime_UTR	50.0%
	AACATCTCCGTCGGTGAAAG+TGG	-	chr4_2:56523506-56523525	Msa0609120:three_prime_UTR	50.0%
	ACGATCTCCACTTTCACCGA+CGG	+	chr4_2:56523516-56523535	None:intergenic	50.0%
	CAAACCCCAGTGTTCTCCAA+AGG	-	chr4_2:56523667-56523686	Msa0609120:three_prime_UTR	50.0%
	AGGTACACTGTGCGATCCTT+TGG	-	chr4_2:56524339-56524358	Msa0609120:intron	50.0%
	TGTTACTGTCAGAGGCGACA+AGG	-	chr4_2:56524392-56524411	Msa0609120:CDS	50.0%
!	CGACAAGGCAATGCAGCTTT+TGG	-	chr4_2:56524407-56524426	Msa0609120:CDS	50.0%
	GGAGCAGATTGTCAAGCATC+AGG	+	chr4_2:56524982-56525001	None:intergenic	50.0%
	GATGCTTGACAATCTGCTCC+AGG	-	chr4_2:56524982-56525001	Msa0609120:intron	50.0%
	TCCAGGTATGACCCTTCTAC+TGG	-	chr4_2:56524999-56525018	Msa0609120:intron	50.0%
	ACCAGTAGAAGGGTCATACC+TGG	+	chr4_2:56525003-56525022	None:intergenic	50.0%
	TGGCATCATCCTTCGTGACA+CGG	+	chr4_2:56525118-56525137	None:intergenic	50.0%
	CGAAGGATGATGCCATGAAG+TGG	-	chr4_2:56525123-56525142	Msa0609120:intron	50.0%
	TGATGCCATGAAGTGGTTCC+AGG	-	chr4_2:56525130-56525149	Msa0609120:intron	50.0%
	GGGCCTGTGATAAACGAAAC+TGG	-	chr4_2:56525474-56525493	Msa0609120:five_prime_UTR	50.0%
	CGGAAGCCATTGATGTGTTG+CGG	+	chr4_2:56523433-56523452	None:intergenic	50.0%
	TGGGTTCGCCAGTTTCTTCT+CGG	+	chr4_2:56523453-56523472	None:intergenic	50.0%
	AGAAACTGGCGAACCCAATG+AGG	-	chr4_2:56523456-56523475	Msa0609120:three_prime_UTR	50.0%
	GAAACTGGCGAACCCAATGA+GGG	-	chr4_2:56523457-56523476	Msa0609120:three_prime_UTR	50.0%
	GAACCCAATGAGGGAGATCA+AGG	-	chr4_2:56523466-56523485	Msa0609120:three_prime_UTR	50.0%
	AACATCTCCGTCGGTGAAAG+TGG	-	chr4_2:56523506-56523525	Msa0609120:three_prime_UTR	50.0%
	ACGATCTCCACTTTCACCGA+CGG	+	chr4_2:56523516-56523535	None:intergenic	50.0%
	CAAACCCCAGTGTTCTCCAA+AGG	-	chr4_2:56523667-56523686	Msa0609120:three_prime_UTR	50.0%
	AGGTACACTGTGCGATCCTT+TGG	-	chr4_2:56524339-56524358	Msa0609120:intron	50.0%
	TGTTACTGTCAGAGGCGACA+AGG	-	chr4_2:56524392-56524411	Msa0609120:CDS	50.0%
!	CGACAAGGCAATGCAGCTTT+TGG	-	chr4_2:56524407-56524426	Msa0609120:CDS	50.0%
	GGAGCAGATTGTCAAGCATC+AGG	+	chr4_2:56524982-56525001	None:intergenic	50.0%
	GATGCTTGACAATCTGCTCC+AGG	-	chr4_2:56524982-56525001	Msa0609120:intron	50.0%
	TCCAGGTATGACCCTTCTAC+TGG	-	chr4_2:56524999-56525018	Msa0609120:intron	50.0%
	ACCAGTAGAAGGGTCATACC+TGG	+	chr4_2:56525003-56525022	None:intergenic	50.0%
	TGGCATCATCCTTCGTGACA+CGG	+	chr4_2:56525118-56525137	None:intergenic	50.0%
	CGAAGGATGATGCCATGAAG+TGG	-	chr4_2:56525123-56525142	Msa0609120:intron	50.0%
	TGATGCCATGAAGTGGTTCC+AGG	-	chr4_2:56525130-56525149	Msa0609120:intron	50.0%
	GGGCCTGTGATAAACGAAAC+TGG	-	chr4_2:56525474-56525493	Msa0609120:five_prime_UTR	50.0%
	CCATTGATGTGTTGCGGCTG+CGG	+	chr4_2:56523427-56523446	None:intergenic	55.0%
	GGTGAAAACCTTAGCGGCTC+TGG	+	chr4_2:56523543-56523562	None:intergenic	55.0%
!!	TTTGTTGTTCTGGAGCGCCC+TGG	-	chr4_2:56525041-56525060	Msa0609120:intron	55.0%
	CCATTGATGTGTTGCGGCTG+CGG	+	chr4_2:56523427-56523446	None:intergenic	55.0%
	GGTGAAAACCTTAGCGGCTC+TGG	+	chr4_2:56523543-56523562	None:intergenic	55.0%
!!	TTTGTTGTTCTGGAGCGCCC+TGG	-	chr4_2:56525041-56525060	Msa0609120:intron	55.0%
	GCTGCGGCAGCAGAGATGAA+TGG	+	chr4_2:56523411-56523430	None:intergenic	60.0%
	CCGCAGCCGCAACACATCAA+TGG	-	chr4_2:56523424-56523443	Msa0609120:three_prime_UTR	60.0%
	TCGTCTCACCAGAGCCGCTA+AGG	-	chr4_2:56523532-56523551	Msa0609120:three_prime_UTR	60.0%
	GACGACCCACACGGTATCCA+GGG	+	chr4_2:56525061-56525080	None:intergenic	60.0%
	CAACACGGGCCTTGCATCTG+CGG	+	chr4_2:56525085-56525104	None:intergenic	60.0%
	GCTGCGGCAGCAGAGATGAA+TGG	+	chr4_2:56523411-56523430	None:intergenic	60.0%
	CCGCAGCCGCAACACATCAA+TGG	-	chr4_2:56523424-56523443	Msa0609120:three_prime_UTR	60.0%
	TCGTCTCACCAGAGCCGCTA+AGG	-	chr4_2:56523532-56523551	Msa0609120:three_prime_UTR	60.0%
	GACGACCCACACGGTATCCA+GGG	+	chr4_2:56525061-56525080	None:intergenic	60.0%
	CAACACGGGCCTTGCATCTG+CGG	+	chr4_2:56525085-56525104	None:intergenic	60.0%
	GAGCGCCCTGGATACCGTGT+GGG	-	chr4_2:56525053-56525072	Msa0609120:intron	65.0%
	CGACGACCCACACGGTATCC+AGG	+	chr4_2:56525062-56525081	None:intergenic	65.0%
	ATCTGCGGCGACGACCCACA+CGG	+	chr4_2:56525070-56525089	None:intergenic	65.0%
	CGCAGATGCAAGGCCCGTGT+TGG	-	chr4_2:56525083-56525102	Msa0609120:intron	65.0%
	GAGCGCCCTGGATACCGTGT+GGG	-	chr4_2:56525053-56525072	Msa0609120:intron	65.0%
	CGACGACCCACACGGTATCC+AGG	+	chr4_2:56525062-56525081	None:intergenic	65.0%
	ATCTGCGGCGACGACCCACA+CGG	+	chr4_2:56525070-56525089	None:intergenic	65.0%
	CGCAGATGCAAGGCCCGTGT+TGG	-	chr4_2:56525083-56525102	Msa0609120:intron	65.0%
!	GGAGCGCCCTGGATACCGTG+TGG	-	chr4_2:56525052-56525071	Msa0609120:intron	70.0%
	GGGTCGTCGCCGCAGATGCA+AGG	-	chr4_2:56525073-56525092	Msa0609120:intron	70.0%
!	GGAGCGCCCTGGATACCGTG+TGG	-	chr4_2:56525052-56525071	Msa0609120:intron	70.0%
	GGGTCGTCGCCGCAGATGCA+AGG	-	chr4_2:56525073-56525092	Msa0609120:intron	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	56523394	56525515	56523394	ID=Msa0609120;Name=Msa0609120
chr4_2	mRNA	56523394	56525515	56523394	ID=Msa0609120-mRNA-1;Parent=Msa0609120;Name=Msa0609120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=49\|1\|1\|1\|1\|1\|4\|316\|181
chr4_2	exon	56523394	56523905	56523394	ID=Msa0609120-mRNA-1:exon:14539;Parent=Msa0609120-mRNA-1
chr4_2	exon	56524377	56524572	56524377	ID=Msa0609120-mRNA-1:exon:14538;Parent=Msa0609120-mRNA-1
chr4_2	exon	56525221	56525263	56525221	ID=Msa0609120-mRNA-1:exon:14537;Parent=Msa0609120-mRNA-1
chr4_2	exon	56525356	56525515	56525356	ID=Msa0609120-mRNA-1:exon:14536;Parent=Msa0609120-mRNA-1
chr4_2	five_prime_UTR	56525467	56525515	56525467	ID=Msa0609120-mRNA-1:five_prime_utr;Parent=Msa0609120-mRNA-1
chr4_2	CDS	56525356	56525466	56525356	ID=Msa0609120-mRNA-1:cds;Parent=Msa0609120-mRNA-1
chr4_2	CDS	56525221	56525263	56525221	ID=Msa0609120-mRNA-1:cds;Parent=Msa0609120-mRNA-1
chr4_2	CDS	56524377	56524572	56524377	ID=Msa0609120-mRNA-1:cds;Parent=Msa0609120-mRNA-1
chr4_2	CDS	56523710	56523905	56523710	ID=Msa0609120-mRNA-1:cds;Parent=Msa0609120-mRNA-1
chr4_2	three_prime_UTR	56523394	56523709	56523394	ID=Msa0609120-mRNA-1:three_prime_utr;Parent=Msa0609120-mRNA-1

Gene Sequence

>Msa0609120

ATGGCTTCCGAGAAGAAACTGGCGAACCCAATGAGGGAGATCAAGGTTCAGAAGCTCGTTCTTAACATCTCCGTCGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTGCTGGAACAACTTAGTGGTCAAACCCCAGTGTTCTCCAAAGCGAGGTACACTGTGCGATCCTTTGGAATCAGAAGAAATGAGAAGATTGCATGCTATGTTACTGTCAGAGGCGACAAGGCAATGCAGCTTTTGGAAAGTGGTTTAAAGGTGAAGGAGTATGAACTTTTGAGGAGGAACTTCAGTGATACTGGTTGCTTTGGCTTTGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGACCCTTCTACTGGTATTTATGGAATGGATTTTTTTGTTGTTCTGGAGCGCCCTGGATACCGTGTGGGTCGTCGCCGCAGATGCAAGGCCCGTGTTGGAATTCAACACCGTGTCACGAAGGATGATGCCATGAAGTGGTTCCAGGTCAAATATGAGGGAGTGATCCTTAACAAATCCCAGGCAATTGTTTAG

Protein sequence

>Msa0609120

MASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAIV*