Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219760 | sp|Q94HF1|EIF3K_ORYSJ | 78.475 | 223 | 47 | 1 | 19 | 241 | 5 | 226 | 4.47e-131 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219760 | G7JS43 | 95.021 | 241 | 6 | 1 | 1 | 241 | 1 | 235 | 1.61e-166 | 468 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071760 | Msa1219760 | 0.806860 | 6.700878e-50 | -8.615850e-47 |
| Msa0086160 | Msa1219760 | 0.829836 | 4.118857e-55 | -8.615850e-47 |
| Msa0087910 | Msa1219760 | 0.820304 | 7.360166e-53 | -8.615850e-47 |
| Msa0089540 | Msa1219760 | 0.801794 | 7.609870e-49 | -8.615850e-47 |
| Msa0114600 | Msa1219760 | 0.822527 | 2.258152e-53 | -8.615850e-47 |
| Msa0602900 | Msa1219760 | 0.859501 | 3.958899e-63 | -8.615850e-47 |
| Msa0605890 | Msa1219760 | 0.810764 | 9.800099e-51 | -8.615850e-47 |
| Msa0619230 | Msa1219760 | 0.830146 | 3.461255e-55 | -8.615850e-47 |
| Msa0643960 | Msa1219760 | 0.859824 | 3.166307e-63 | -8.615850e-47 |
| Msa0663400 | Msa1219760 | 0.805074 | 1.591132e-49 | -8.615850e-47 |
| Msa0694400 | Msa1219760 | 0.805282 | 1.439476e-49 | -8.615850e-47 |
| Msa0708630 | Msa1219760 | 0.822886 | 1.863045e-53 | -8.615850e-47 |
| Msa0790450 | Msa1219760 | 0.839832 | 1.251244e-57 | -8.615850e-47 |
| Msa0798590 | Msa1219760 | 0.805207 | 1.491989e-49 | -8.615850e-47 |
| Msa0812240 | Msa1219760 | 0.803463 | 3.445054e-49 | -8.615850e-47 |
| Msa0132460 | Msa1219760 | 0.822294 | 2.557840e-53 | -8.615850e-47 |
| Msa0134580 | Msa1219760 | 0.830260 | 3.245264e-55 | -8.615850e-47 |
| Msa0182050 | Msa1219760 | 0.820937 | 5.268253e-53 | -8.615850e-47 |
| Msa0182100 | Msa1219760 | 0.845099 | 5.014682e-59 | -8.615850e-47 |
| Msa0188740 | Msa1219760 | 0.827983 | 1.157012e-54 | -8.615850e-47 |
| Msa0192300 | Msa1219760 | 0.805259 | 1.455300e-49 | -8.615850e-47 |
| Msa0237180 | Msa1219760 | 0.810215 | 1.287723e-50 | -8.615850e-47 |
| Msa0371490 | Msa1219760 | 0.805083 | 1.584389e-49 | -8.615850e-47 |
| Msa0382950 | Msa1219760 | 0.817527 | 3.148223e-52 | -8.615850e-47 |
| Msa0426250 | Msa1219760 | 0.819071 | 1.407544e-52 | -8.615850e-47 |
| Msa0432750 | Msa1219760 | 0.835418 | 1.697697e-56 | -8.615850e-47 |
| Msa0433060 | Msa1219760 | 0.851817 | 6.929923e-61 | -8.615850e-47 |
| Msa0479980 | Msa1219760 | 0.839591 | 1.446327e-57 | -8.615850e-47 |
| Msa1025200 | Msa1219760 | 0.822557 | 2.223239e-53 | -8.615850e-47 |
| Msa1025220 | Msa1219760 | 0.817028 | 4.077654e-52 | -8.615850e-47 |
| Msa1047020 | Msa1219760 | 0.806251 | 9.005321e-50 | -8.615850e-47 |
| Msa1085850 | Msa1219760 | 0.865043 | 7.860885e-65 | -8.615850e-47 |
| Msa0270160 | Msa1219760 | 0.840768 | 7.126047e-58 | -8.615850e-47 |
| Msa0277600 | Msa1219760 | 0.832836 | 7.530212e-56 | -8.615850e-47 |
| Msa0301250 | Msa1219760 | 0.803108 | 4.080215e-49 | -8.615850e-47 |
| Msa0313060 | Msa1219760 | 0.821917 | 3.129449e-53 | -8.615850e-47 |
| Msa0315430 | Msa1219760 | 0.818662 | 1.743663e-52 | -8.615850e-47 |
| Msa0315660 | Msa1219760 | 0.805736 | 1.155697e-49 | -8.615850e-47 |
| Msa1116940 | Msa1219760 | 0.824388 | 8.293656e-54 | -8.615850e-47 |
| Msa1136880 | Msa1219760 | 0.821134 | 4.743854e-53 | -8.615850e-47 |
| Msa1165210 | Msa1219760 | 0.811896 | 5.565128e-51 | -8.615850e-47 |
| Msa1219760 | Msa1235950 | 0.833235 | 5.990904e-56 | -8.615850e-47 |
| Msa1219760 | Msa1235980 | 0.835259 | 1.861857e-56 | -8.615850e-47 |
| Msa1219760 | Msa1237040 | 0.808741 | 2.668347e-50 | -8.615850e-47 |
| Msa1219760 | Msa1284060 | 0.812364 | 4.401202e-51 | -8.615850e-47 |
| Msa1219760 | Msa1333370 | 0.945006 | 6.832691e-104 | -8.615850e-47 |
| Msa1219760 | Msa1341780 | 0.845492 | 3.925796e-59 | -8.615850e-47 |
| Msa1219760 | Msa1371410 | 0.842961 | 1.878041e-58 | -8.615850e-47 |
| Msa1219760 | Msa1385480 | 0.805858 | 1.089376e-49 | -8.615850e-47 |
| Msa1219760 | Msa1390760 | 0.832300 | 1.022960e-55 | -8.615850e-47 |
| Msa1219760 | Msa1403520 | 0.818524 | 1.874505e-52 | -8.615850e-47 |
| Msa1219760 | Msa1415620 | 0.839176 | 1.852880e-57 | -8.615850e-47 |
| Msa1219760 | Msa1450560 | 0.840545 | 8.151470e-58 | -8.615850e-47 |
| Msa1219760 | Msa1465700 | 0.824694 | 7.026790e-54 | -8.615850e-47 |
| Msa0521730 | Msa1219760 | 0.831315 | 1.790096e-55 | -8.615850e-47 |
| Msa0524680 | Msa1219760 | 0.847966 | 8.275708e-60 | -8.615850e-47 |
| Msa0547920 | Msa1219760 | 0.859895 | 3.012435e-63 | -8.615850e-47 |
| Msa0550490 | Msa1219760 | 0.801743 | 7.797880e-49 | -8.615850e-47 |
| Msa0573550 | Msa1219760 | 0.823587 | 1.278564e-53 | -8.615850e-47 |
| Msa0574780 | Msa1219760 | 0.803502 | 3.381035e-49 | -8.615850e-47 |
| Msa0585570 | Msa1219760 | 0.803326 | 3.677781e-49 | -8.615850e-47 |
| Msa0597240 | Msa1219760 | 0.815704 | 8.067370e-52 | -8.615850e-47 |
| Msa0929700 | Msa1219760 | 0.838375 | 2.985055e-57 | -8.615850e-47 |
| Msa0930890 | Msa1219760 | 0.825346 | 4.928333e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219760 | MtrunA17_Chr4g0069991 | 95.021 | 241 | 6 | 1 | 1 | 241 | 1 | 235 | 3.10e-170 | 468 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219760 | AT4G33250.1 | 77.477 | 222 | 45 | 2 | 19 | 240 | 9 | 225 | 8.25e-128 | 361 |
Find 65 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATCATTAAATTCATTTC+TGG | 0.142858 | 8_1:+82655419 | None:intergenic |
| CTGGAAGGTTTCGTCAGTTC+TGG | 0.234923 | 8_1:-82656627 | Msa1219760:CDS |
| TCGAGATCTGGAAGAATATC+TGG | 0.270145 | 8_1:+82657868 | None:intergenic |
| TGTTCTGTCTCACTATTTAG+AGG | 0.302059 | 8_1:-82656719 | Msa1219760:intron |
| ACCTCAGCAAGCACAGTTCT+AGG | 0.306787 | 8_1:+82655969 | None:intergenic |
| GCACAGTTCTAGGAATCTTT+TGG | 0.326432 | 8_1:+82655979 | None:intergenic |
| GATAGCGAACGCGAAGTACT+AGG | 0.371547 | 8_1:-82658040 | Msa1219760:five_prime_UTR |
| TGAAGAGAGAGTTTCGAAAT+GGG | 0.376778 | 8_1:-82657994 | Msa1219760:exon |
| GGATCATTAAATTCATTTCT+GGG | 0.389991 | 8_1:+82655420 | None:intergenic |
| CGTTGCTCGCATATTGGTTA+AGG | 0.392388 | 8_1:-82657551 | Msa1219760:intron |
| GAATAGGCTATCAATGTAGA+AGG | 0.397813 | 8_1:-82655534 | Msa1219760:intron |
| GTGAAGAGAGAGTTTCGAAA+TGG | 0.406395 | 8_1:-82657995 | Msa1219760:exon |
| AGTTGGCTACTTGGTGTTCA+AGG | 0.416300 | 8_1:+82655493 | None:intergenic |
| ATAGTTTGTACCACACGTTC+CGG | 0.420899 | 8_1:+82657091 | None:intergenic |
| AAGAGACACAGGCTGAAGTC+TGG | 0.427245 | 8_1:+82657121 | None:intergenic |
| CCCAACCAGAGTTGGCTACT+TGG | 0.435040 | 8_1:+82655484 | None:intergenic |
| CGATGAGTTGACCCTTCCCC+TGG | 0.436267 | 8_1:+82655448 | None:intergenic |
| TGGAAGGTTTCGTCAGTTCT+GGG | 0.441956 | 8_1:-82656626 | Msa1219760:CDS |
| ATAGAAAATCAGCTAAGAAT+AGG | 0.455595 | 8_1:+82655339 | None:intergenic |
| CGAAAATTATGTCAATGATC+AGG | 0.458244 | 8_1:-82657848 | Msa1219760:intron |
| CTCAAATTGAAGCATACAAT+GGG | 0.458273 | 8_1:+82655243 | None:intergenic |
| TCCTTGCTGTTGTACTTGTA+CGG | 0.463786 | 8_1:+82657951 | None:intergenic |
| ACAACAGCAAGGACAAGGAC+AGG | 0.464338 | 8_1:-82657941 | Msa1219760:CDS |
| CTCAATAACCCAACCAGAGT+TGG | 0.468021 | 8_1:+82655476 | None:intergenic |
| AATTATTGCAGGATTTGAGC+AGG | 0.473491 | 8_1:-82656042 | Msa1219760:intron |
| CATATAGTTGAAGCTGTGCC+AGG | 0.477852 | 8_1:-82656583 | Msa1219760:intron |
| CTGCCTTCTTCGCCTCTACC+AGG | 0.481697 | 8_1:-82657709 | Msa1219760:intron |
| TCAGATCGTTGCTCGCATAT+TGG | 0.484728 | 8_1:-82657557 | Msa1219760:CDS |
| CAATGTAGAAGGTTTATCCT+TGG | 0.488911 | 8_1:-82655523 | Msa1219760:CDS |
| CACTGCAGATAGTGTACCAT+TGG | 0.497181 | 8_1:-82655382 | Msa1219760:CDS |
| CATTAAATTCATTTCTGGGA+AGG | 0.506668 | 8_1:+82655424 | None:intergenic |
| TATTGAGAAAAGCCAGGGGA+AGG | 0.508280 | 8_1:-82655460 | Msa1219760:CDS |
| GAACATGAATCGCATAGCCT+TGG | 0.508528 | 8_1:+82656015 | None:intergenic |
| CCAAGTAGCCAACTCTGGTT+GGG | 0.517284 | 8_1:-82655484 | Msa1219760:CDS |
| TTGGGTTATTGAGAAAAGCC+AGG | 0.525809 | 8_1:-82655466 | Msa1219760:CDS |
| GAAGGCAGAGATTTGATTCG+AGG | 0.526051 | 8_1:+82657724 | None:intergenic |
| CACAGGCTGAAGTCTGGAGC+TGG | 0.532716 | 8_1:+82657127 | None:intergenic |
| ATAGCGAACGCGAAGTACTA+GGG | 0.534033 | 8_1:-82658039 | Msa1219760:five_prime_UTR |
| ATTCTTCTCTTCAGACTGGA+AGG | 0.536061 | 8_1:-82656642 | Msa1219760:intron |
| ACCAAGTAGCCAACTCTGGT+TGG | 0.542756 | 8_1:-82655485 | Msa1219760:CDS |
| TCTCAAATTGAAGCATACAA+TGG | 0.545357 | 8_1:+82655242 | None:intergenic |
| AATTGAAGCATACAATGGGA+TGG | 0.554475 | 8_1:+82655247 | None:intergenic |
| GGATTTGAGCAGGCAATCCA+AGG | 0.567214 | 8_1:-82656032 | Msa1219760:CDS |
| TACCATTGGAGCACATTAGA+CGG | 0.570341 | 8_1:-82655368 | Msa1219760:CDS |
| TGGAGCTGGCATAGCCATGA+GGG | 0.570416 | 8_1:+82657141 | None:intergenic |
| TCAATTTGAGAATTCATGAA+CGG | 0.571032 | 8_1:-82655230 | Msa1219760:three_prime_UTR |
| ATACCTGGTAGAGGCGAAGA+AGG | 0.571105 | 8_1:+82657706 | None:intergenic |
| GTGTTCAAGGAATTTGTCCA+AGG | 0.573518 | 8_1:+82655506 | None:intergenic |
| GAACACCAAGTAGCCAACTC+TGG | 0.578457 | 8_1:-82655489 | Msa1219760:CDS |
| AGAAAATGGATACCTGGTAG+AGG | 0.583966 | 8_1:+82657697 | None:intergenic |
| TGGGTTATTGAGAAAAGCCA+GGG | 0.586311 | 8_1:-82655465 | Msa1219760:CDS |
| ATTGAAGCATACAATGGGAT+GGG | 0.587058 | 8_1:+82655248 | None:intergenic |
| ATCCGTCTAATGTGCTCCAA+TGG | 0.587256 | 8_1:+82655366 | None:intergenic |
| GAGCTGTTCGACAGTGTAAG+CGG | 0.592715 | 8_1:+82657912 | None:intergenic |
| TCCTAGAACTGTGCTTGCTG+AGG | 0.608721 | 8_1:-82655970 | Msa1219760:intron |
| CAACAGCAAGGACAAGGACA+GGG | 0.614854 | 8_1:-82657940 | Msa1219760:CDS |
| ATTGAGAAAAGCCAGGGGAA+GGG | 0.616926 | 8_1:-82655459 | Msa1219760:CDS |
| CAAGTACAACAGCAAGGACA+AGG | 0.618746 | 8_1:-82657946 | Msa1219760:CDS |
| TCGCTATCTTACCACTCACA+AGG | 0.620802 | 8_1:+82658055 | None:intergenic |
| CTGTGAATATTAGCAAATGG+AGG | 0.623742 | 8_1:-82656761 | Msa1219760:intron |
| CGCTATCTTACCACTCACAA+GGG | 0.651512 | 8_1:+82658056 | None:intergenic |
| CTGGAGCTGGCATAGCCATG+AGG | 0.661849 | 8_1:+82657140 | None:intergenic |
| CAGCAAGGACAAGGACAGGG+AGG | 0.673719 | 8_1:-82657937 | Msa1219760:CDS |
| GCCGTACAAGTACAACAGCA+AGG | 0.674180 | 8_1:-82657952 | Msa1219760:CDS |
| GGGTTATTGAGAAAAGCCAG+GGG | 0.752929 | 8_1:-82655464 | Msa1219760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATTTTAAAATGATTAAT+AGG | - | chr8_1:82655573-82655592 | Msa1219760:intron | 10.0% |
| !!! | ATTTGGTTTTGTTTTATAAT+AGG | - | chr8_1:82656050-82656069 | Msa1219760:intron | 15.0% |
| !! | ACAAAAATTAATGAACAAAA+GGG | + | chr8_1:82656430-82656449 | None:intergenic | 15.0% |
| !! | AACAAAAATTAATGAACAAA+AGG | + | chr8_1:82656431-82656450 | None:intergenic | 15.0% |
| !!! | TAAATGATTCTTGAAAATTT+TGG | - | chr8_1:82657455-82657474 | Msa1219760:intron | 15.0% |
| !!! | TTTTTTTGAACAAGAAATTT+TGG | - | chr8_1:82657493-82657512 | Msa1219760:intron | 15.0% |
| !! | CAAGTTTAACAAAAAATAAA+TGG | + | chr8_1:82657661-82657680 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTAAACTTGAAT+AGG | - | chr8_1:82657664-82657683 | Msa1219760:intron | 15.0% |
| !! | AATGACGATTAATAAGAAAA+TGG | + | chr8_1:82655534-82655553 | None:intergenic | 20.0% |
| !! | TTATGAAAATAAGCTGAAAA+CGG | + | chr8_1:82655843-82655862 | None:intergenic | 20.0% |
| !! | TACTATTACAATTGACTATT+AGG | + | chr8_1:82656246-82656265 | None:intergenic | 20.0% |
| !!! | GTAATAGTATGAATTTTACT+TGG | - | chr8_1:82656257-82656276 | Msa1219760:intron | 20.0% |
| !!! | TTACTTTAGAAAATTATTGC+AGG | - | chr8_1:82657161-82657180 | Msa1219760:intron | 20.0% |
| !! | ATTTAAATGGACAAAACAAA+AGG | + | chr8_1:82657274-82657293 | None:intergenic | 20.0% |
| ! | ATATGGATGATAAAGAAGAA+AGG | + | chr8_1:82655395-82655414 | None:intergenic | 25.0% |
| ! | ATCATCCATATCACTTAATT+AGG | - | chr8_1:82655404-82655423 | Msa1219760:CDS | 25.0% |
| ! | TCATCCATATCACTTAATTA+GGG | - | chr8_1:82655405-82655424 | Msa1219760:CDS | 25.0% |
| ! | TAAACCCTAATTAAGTGATA+TGG | + | chr8_1:82655412-82655431 | None:intergenic | 25.0% |
| !! | TCAATTCCAATTATTTCTTC+AGG | - | chr8_1:82655448-82655467 | Msa1219760:CDS | 25.0% |
| ! | ATGAAACCTGAAGAAATAAT+TGG | + | chr8_1:82655457-82655476 | None:intergenic | 25.0% |
| ! | TTAATAAGAAAATGGATACC+TGG | + | chr8_1:82655526-82655545 | None:intergenic | 25.0% |
| ! | TTATCACTTGCTCAAATATT+TGG | - | chr8_1:82656033-82656052 | Msa1219760:CDS | 25.0% |
| ! | TTAGATGTCTATAATTGAGA+AGG | - | chr8_1:82656219-82656238 | Msa1219760:intron | 25.0% |
| ! | TATATCGAGTAATGCTAAAT+AGG | + | chr8_1:82656396-82656415 | None:intergenic | 25.0% |
| ! | TTACTGTGAATATTAGCAAA+TGG | - | chr8_1:82656450-82656469 | Msa1219760:intron | 25.0% |
| ! | ATTAAATCAGTATAATCACC+TGG | + | chr8_1:82656652-82656671 | None:intergenic | 25.0% |
| ! | AGACTTAGAAAAACTATTAG+AGG | - | chr8_1:82656744-82656763 | Msa1219760:CDS | 25.0% |
| ! | TATTAGAGGATCTATTAAGA+AGG | - | chr8_1:82656758-82656777 | Msa1219760:intron | 25.0% |
| ! | CTTGTCATTGATATGTTATT+GGG | - | chr8_1:82656988-82657007 | Msa1219760:intron | 25.0% |
| !!! | ATTGATTTTTTGAAAACCTG+TGG | - | chr8_1:82657055-82657074 | Msa1219760:intron | 25.0% |
| !!! | TTGATTTTTTGAAAACCTGT+GGG | - | chr8_1:82657056-82657075 | Msa1219760:intron | 25.0% |
| !! | TGTTTTGTCCATTTAAATGT+TGG | - | chr8_1:82657276-82657295 | Msa1219760:intron | 25.0% |
| ! | TAAACGAACCAACATTTAAA+TGG | + | chr8_1:82657287-82657306 | None:intergenic | 25.0% |
| ! | TATTGTTTCGTTTATTCCTT+TGG | - | chr8_1:82657429-82657448 | Msa1219760:intron | 25.0% |
| ! | ATTGTTTCGTTTATTCCTTT+GGG | - | chr8_1:82657430-82657449 | Msa1219760:intron | 25.0% |
| !! | ATGATTCTTGAAAATTTTGG+CGG | - | chr8_1:82657458-82657477 | Msa1219760:intron | 25.0% |
| !! | TTTTGAACAAGAAATTTTGG+CGG | - | chr8_1:82657496-82657515 | Msa1219760:intron | 25.0% |
| ! | GAAATCAACTGATATCATAT+AGG | + | chr8_1:82657610-82657629 | None:intergenic | 25.0% |
| ! | GGATCATTAAATTCATTTCT+GGG | + | chr8_1:82657797-82657816 | None:intergenic | 25.0% |
| ! | TGGATCATTAAATTCATTTC+TGG | + | chr8_1:82657798-82657817 | None:intergenic | 25.0% |
| ! | ATAGAAAATCAGCTAAGAAT+AGG | + | chr8_1:82657878-82657897 | None:intergenic | 25.0% |
| !!! | TATTCTTAGCTGATTTTCTA+TGG | - | chr8_1:82657877-82657896 | Msa1219760:CDS | 25.0% |
| !!! | ATTCTTAGCTGATTTTCTAT+GGG | - | chr8_1:82657878-82657897 | Msa1219760:CDS | 25.0% |
| ! | TCAATTTGAGAATTCATGAA+CGG | - | chr8_1:82657984-82658003 | Msa1219760:exon | 25.0% |
| ! | ACATTAATGCAAAAAGTCAA+GGG | + | chr8_1:82658023-82658042 | None:intergenic | 25.0% |
| ! | AACATTAATGCAAAAAGTCA+AGG | + | chr8_1:82658024-82658043 | None:intergenic | 25.0% |
| !!! | AGTAACTTGCTTTTTGAAAT+AGG | + | chr8_1:82658066-82658085 | None:intergenic | 25.0% |
| !! | TTGACATAATTTTCGAGATC+TGG | + | chr8_1:82655361-82655380 | None:intergenic | 30.0% |
| CGAAAATTATGTCAATGATC+AGG | - | chr8_1:82655366-82655385 | Msa1219760:CDS | 30.0% | |
| AACCAAAAATCATATGCCTA+AGG | - | chr8_1:82655724-82655743 | Msa1219760:intron | 30.0% | |
| ACCAAAAATCATATGCCTAA+GGG | - | chr8_1:82655725-82655744 | Msa1219760:intron | 30.0% | |
| AGTGATAATATCAGCTATCT+TGG | + | chr8_1:82656021-82656040 | None:intergenic | 30.0% | |
| TGTTCTCATGCATAATTGAT+TGG | - | chr8_1:82656170-82656189 | Msa1219760:intron | 30.0% | |
| CTCAATTATAGACATCTAAC+AGG | + | chr8_1:82656218-82656237 | None:intergenic | 30.0% | |
| TAATATTCTTCTCTTCAGAC+TGG | - | chr8_1:82656568-82656587 | Msa1219760:intron | 30.0% | |
| ! | TGGTTTTTGATAAATCACTG+TGG | - | chr8_1:82656811-82656830 | Msa1219760:intron | 30.0% |
| ATATGACAAGCATTTCAAGA+TGG | - | chr8_1:82656951-82656970 | Msa1219760:intron | 30.0% | |
| GCTTGTCATTGATATGTTAT+TGG | - | chr8_1:82656987-82657006 | Msa1219760:intron | 30.0% | |
| !!! | TGATTTTTTGAAAACCTGTG+GGG | - | chr8_1:82657057-82657076 | Msa1219760:intron | 30.0% |
| !! | TGGGGATTTTTGTTTATCTT+TGG | - | chr8_1:82657075-82657094 | Msa1219760:intron | 30.0% |
| !! | GTTTAGTATTGACTCTGATT+TGG | - | chr8_1:82657097-82657116 | Msa1219760:intron | 30.0% |
| !!! | AGTTTTGGAGAATTAATGCA+AGG | + | chr8_1:82657358-82657377 | None:intergenic | 30.0% |
| TCCAAAACTTAGTTTAACTC+CGG | - | chr8_1:82657369-82657388 | Msa1219760:intron | 30.0% | |
| TTGTTTCGTTTATTCCTTTG+GGG | - | chr8_1:82657431-82657450 | Msa1219760:intron | 30.0% | |
| ! | TTTCTCAAATACAAGAGTGT+TGG | - | chr8_1:82657544-82657563 | Msa1219760:intron | 30.0% |
| ! | CATTAAATTCATTTCTGGGA+AGG | + | chr8_1:82657793-82657812 | None:intergenic | 30.0% |
| ! | GCAGTGTTTTTCTTCAAAAT+TGG | + | chr8_1:82657818-82657837 | None:intergenic | 30.0% |
| !! | TTCTTAGCTGATTTTCTATG+GGG | - | chr8_1:82657879-82657898 | Msa1219760:CDS | 30.0% |
| ! | TCTCAAATTCGTACATTTTC+TGG | + | chr8_1:82657920-82657939 | None:intergenic | 30.0% |
| CTCAAATTGAAGCATACAAT+GGG | + | chr8_1:82657974-82657993 | None:intergenic | 30.0% | |
| TCTCAAATTGAAGCATACAA+TGG | + | chr8_1:82657975-82657994 | None:intergenic | 30.0% | |
| CATTAATGCAAAAAGTCAAG+GGG | + | chr8_1:82658022-82658041 | None:intergenic | 30.0% | |
| TGAAGAGAGAGTTTCGAAAT+GGG | - | chr8_1:82655220-82655239 | Msa1219760:three_prime_UTR | 35.0% | |
| ! | ATCTGAGAACTCATTTTCTC+AGG | + | chr8_1:82655643-82655662 | None:intergenic | 35.0% |
| ! | TCCCTTAGGCATATGATTTT+TGG | + | chr8_1:82655729-82655748 | None:intergenic | 35.0% |
| ! | TCATATGCCTAAGGGATTTT+TGG | - | chr8_1:82655733-82655752 | Msa1219760:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+CGG | + | chr8_1:82655871-82655890 | None:intergenic | 35.0% |
| GCTTATCATGATAAGCACTT+GGG | - | chr8_1:82655959-82655978 | Msa1219760:intron | 35.0% | |
| ! | TGTTTTATAATAGGCCCTCA+TGG | - | chr8_1:82656059-82656078 | Msa1219760:intron | 35.0% |
| TTATAGACATCTAACAGGAG+TGG | + | chr8_1:82656213-82656232 | None:intergenic | 35.0% | |
| ! | GTCAATCTTTTGTGTTACAC+AGG | - | chr8_1:82656279-82656298 | Msa1219760:intron | 35.0% |
| TCGAGTAATGCTAAATAGGA+AGG | + | chr8_1:82656392-82656411 | None:intergenic | 35.0% | |
| CTGTGAATATTAGCAAATGG+AGG | - | chr8_1:82656453-82656472 | Msa1219760:intron | 35.0% | |
| TGTTCTGTCTCACTATTTAG+AGG | - | chr8_1:82656495-82656514 | Msa1219760:intron | 35.0% | |
| GTTTCTCTTATAGTTTCTCC+AGG | - | chr8_1:82656692-82656711 | Msa1219760:intron | 35.0% | |
| ! | TGATGAGTTGGAAAAAGACA+TGG | - | chr8_1:82656791-82656810 | Msa1219760:intron | 35.0% |
| ATCAGATATTTGTAACCGCA+AGG | + | chr8_1:82656931-82656950 | None:intergenic | 35.0% | |
| AGATAAACAAAAATCCCCAC+AGG | + | chr8_1:82657074-82657093 | None:intergenic | 35.0% | |
| !! | TTGACTCTGATTTGGCTTAT+AGG | - | chr8_1:82657105-82657124 | Msa1219760:CDS | 35.0% |
| AATTATTGCAGGATTTGAGC+AGG | - | chr8_1:82657172-82657191 | Msa1219760:intron | 35.0% | |
| ! | AGGAATCTTTTGGTAAGTCA+AGG | + | chr8_1:82657228-82657247 | None:intergenic | 35.0% |
| ! | ACCGGAGTTAAACTAAGTTT+TGG | + | chr8_1:82657373-82657392 | None:intergenic | 35.0% |
| TATGCGTTCATTCATCAAAC+CGG | + | chr8_1:82657391-82657410 | None:intergenic | 35.0% | |
| CAAGAATCATTTAACCCCAA+AGG | + | chr8_1:82657448-82657467 | None:intergenic | 35.0% | |
| GAATAGGCTATCAATGTAGA+AGG | - | chr8_1:82657680-82657699 | Msa1219760:intron | 35.0% | |
| CAATGTAGAAGGTTTATCCT+TGG | - | chr8_1:82657691-82657710 | Msa1219760:intron | 35.0% | |
| !! | TCTTAGCTGATTTTCTATGG+GGG | - | chr8_1:82657880-82657899 | Msa1219760:CDS | 35.0% |
| ATTGAAGCATACAATGGGAT+GGG | + | chr8_1:82657969-82657988 | None:intergenic | 35.0% | |
| AATTGAAGCATACAATGGGA+TGG | + | chr8_1:82657970-82657989 | None:intergenic | 35.0% | |
| GTGAAGAGAGAGTTTCGAAA+TGG | - | chr8_1:82655219-82655238 | Msa1219760:three_prime_UTR | 40.0% | |
| !! | TCCTTGCTGTTGTACTTGTA+CGG | + | chr8_1:82655266-82655285 | None:intergenic | 40.0% |
| TCGAGATCTGGAAGAATATC+TGG | + | chr8_1:82655349-82655368 | None:intergenic | 40.0% | |
| AGAAAATGGATACCTGGTAG+AGG | + | chr8_1:82655520-82655539 | None:intergenic | 40.0% | |
| !! | TGCCTAAGGGATTTTTGGAT+TGG | - | chr8_1:82655738-82655757 | Msa1219760:intron | 40.0% |
| AGCCAATCCAAAAATCCCTT+AGG | + | chr8_1:82655743-82655762 | None:intergenic | 40.0% | |
| CGCTTATCATGATAAGCACT+TGG | - | chr8_1:82655958-82655977 | Msa1219760:intron | 40.0% | |
| !! | CCTGTGTCTCTTTTTGATTC+CGG | - | chr8_1:82656104-82656123 | Msa1219760:intron | 40.0% |
| ! | ATAGTTTGTACCACACGTTC+CGG | + | chr8_1:82656126-82656145 | None:intergenic | 40.0% |
| TCTTTGAACTGCGTAAGTCA+TGG | + | chr8_1:82656538-82656557 | None:intergenic | 40.0% | |
| ATTCTTCTCTTCAGACTGGA+AGG | - | chr8_1:82656572-82656591 | Msa1219760:intron | 40.0% | |
| TCCCCTAAATCACTAGAAGT+AGG | - | chr8_1:82656718-82656737 | Msa1219760:intron | 40.0% | |
| CCCTACTTCTAGTGATTTAG+GGG | + | chr8_1:82656722-82656741 | None:intergenic | 40.0% | |
| CCCCTAAATCACTAGAAGTA+GGG | - | chr8_1:82656719-82656738 | Msa1219760:intron | 40.0% | |
| CCCCTACTTCTAGTGATTTA+GGG | + | chr8_1:82656723-82656742 | None:intergenic | 40.0% | |
| CCCTAAATCACTAGAAGTAG+GGG | - | chr8_1:82656720-82656739 | Msa1219760:CDS | 40.0% | |
| TCCCCTACTTCTAGTGATTT+AGG | + | chr8_1:82656724-82656743 | None:intergenic | 40.0% | |
| GGATCTAGAGATTGATGAGT+TGG | - | chr8_1:82656779-82656798 | Msa1219760:intron | 40.0% | |
| TGTTAATTGCGTCGTGTAAC+TGG | - | chr8_1:82656901-82656920 | Msa1219760:intron | 40.0% | |
| GTTAATTGCGTCGTGTAACT+GGG | - | chr8_1:82656902-82656921 | Msa1219760:intron | 40.0% | |
| !!! | GCACAGTTCTAGGAATCTTT+TGG | + | chr8_1:82657238-82657257 | None:intergenic | 40.0% |
| GTGTTCAAGGAATTTGTCCA+AGG | + | chr8_1:82657711-82657730 | None:intergenic | 40.0% | |
| TTGGGTTATTGAGAAAAGCC+AGG | - | chr8_1:82657748-82657767 | Msa1219760:intron | 40.0% | |
| TGGGTTATTGAGAAAAGCCA+GGG | - | chr8_1:82657749-82657768 | Msa1219760:intron | 40.0% | |
| TACCATTGGAGCACATTAGA+CGG | - | chr8_1:82657846-82657865 | Msa1219760:intron | 40.0% | |
| ! | TCGTTCTTTTCCCTTGTGAG+TGG | - | chr8_1:82655148-82655167 | Msa1219760:three_prime_UTR | 45.0% |
| CGCTATCTTACCACTCACAA+GGG | + | chr8_1:82655161-82655180 | None:intergenic | 45.0% | |
| TCGCTATCTTACCACTCACA+AGG | + | chr8_1:82655162-82655181 | None:intergenic | 45.0% | |
| ! | ATAGCGAACGCGAAGTACTA+GGG | - | chr8_1:82655175-82655194 | Msa1219760:three_prime_UTR | 45.0% |
| CAAGTACAACAGCAAGGACA+AGG | - | chr8_1:82655268-82655287 | Msa1219760:three_prime_UTR | 45.0% | |
| ! | GAAGGCAGAGATTTGATTCG+AGG | + | chr8_1:82655493-82655512 | None:intergenic | 45.0% |
| TCAGATCGTTGCTCGCATAT+TGG | - | chr8_1:82655657-82655676 | Msa1219760:intron | 45.0% | |
| ! | CGTTGCTCGCATATTGGTTA+AGG | - | chr8_1:82655663-82655682 | Msa1219760:intron | 45.0% |
| !! | TCAGCTATCTTGGCTCTGTT+TGG | + | chr8_1:82656011-82656030 | None:intergenic | 45.0% |
| CCGGAATCAAAAAGAGACAC+AGG | + | chr8_1:82656107-82656126 | None:intergenic | 45.0% | |
| !! | CTTTTTGATTCCGGAACGTG+TGG | - | chr8_1:82656113-82656132 | Msa1219760:intron | 45.0% |
| TGGAAGGTTTCGTCAGTTCT+GGG | - | chr8_1:82656588-82656607 | Msa1219760:CDS | 45.0% | |
| CATATAGTTGAAGCTGTGCC+AGG | - | chr8_1:82656631-82656650 | Msa1219760:CDS | 45.0% | |
| TAGTGATTTAGGGGAAGACC+TGG | + | chr8_1:82656713-82656732 | None:intergenic | 45.0% | |
| ATGTAGCCAACCTCACTTAG+TGG | - | chr8_1:82656847-82656866 | Msa1219760:intron | 45.0% | |
| TGTAGCCAACCTCACTTAGT+GGG | - | chr8_1:82656848-82656867 | Msa1219760:intron | 45.0% | |
| CTTATCCCACTAAGTGAGGT+TGG | + | chr8_1:82656856-82656875 | None:intergenic | 45.0% | |
| CAACCTCACTTAGTGGGATA+AGG | - | chr8_1:82656854-82656873 | Msa1219760:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+AGG | + | chr8_1:82656860-82656879 | None:intergenic | 45.0% |
| TCACTTAGTGGGATAAGGCT+TGG | - | chr8_1:82656859-82656878 | Msa1219760:intron | 45.0% | |
| GAACATGAATCGCATAGCCT+TGG | + | chr8_1:82657202-82657221 | None:intergenic | 45.0% | |
| !! | AGTTGGCTACTTGGTGTTCA+AGG | + | chr8_1:82657724-82657743 | None:intergenic | 45.0% |
| CTCAATAACCCAACCAGAGT+TGG | + | chr8_1:82657741-82657760 | None:intergenic | 45.0% | |
| GGGTTATTGAGAAAAGCCAG+GGG | - | chr8_1:82657750-82657769 | Msa1219760:intron | 45.0% | |
| TATTGAGAAAAGCCAGGGGA+AGG | - | chr8_1:82657754-82657773 | Msa1219760:intron | 45.0% | |
| ATTGAGAAAAGCCAGGGGAA+GGG | - | chr8_1:82657755-82657774 | Msa1219760:intron | 45.0% | |
| CACTGCAGATAGTGTACCAT+TGG | - | chr8_1:82657832-82657851 | Msa1219760:intron | 45.0% | |
| ATCCGTCTAATGTGCTCCAA+TGG | + | chr8_1:82657851-82657870 | None:intergenic | 45.0% | |
| ! | GATAGCGAACGCGAAGTACT+AGG | - | chr8_1:82655174-82655193 | Msa1219760:three_prime_UTR | 50.0% |
| GCCGTACAAGTACAACAGCA+AGG | - | chr8_1:82655262-82655281 | Msa1219760:three_prime_UTR | 50.0% | |
| ACAACAGCAAGGACAAGGAC+AGG | - | chr8_1:82655273-82655292 | Msa1219760:three_prime_UTR | 50.0% | |
| CAACAGCAAGGACAAGGACA+GGG | - | chr8_1:82655274-82655293 | Msa1219760:three_prime_UTR | 50.0% | |
| GAGCTGTTCGACAGTGTAAG+CGG | + | chr8_1:82655305-82655324 | None:intergenic | 50.0% | |
| ATACCTGGTAGAGGCGAAGA+AGG | + | chr8_1:82655511-82655530 | None:intergenic | 50.0% | |
| AAGAGACACAGGCTGAAGTC+TGG | + | chr8_1:82656096-82656115 | None:intergenic | 50.0% | |
| CTGGAAGGTTTCGTCAGTTC+TGG | - | chr8_1:82656587-82656606 | Msa1219760:CDS | 50.0% | |
| GGATTTGAGCAGGCAATCCA+AGG | - | chr8_1:82657182-82657201 | Msa1219760:intron | 50.0% | |
| ! | TCCTAGAACTGTGCTTGCTG+AGG | - | chr8_1:82657244-82657263 | Msa1219760:intron | 50.0% |
| ACCTCAGCAAGCACAGTTCT+AGG | + | chr8_1:82657248-82657267 | None:intergenic | 50.0% | |
| GAACACCAAGTAGCCAACTC+TGG | - | chr8_1:82657725-82657744 | Msa1219760:CDS | 50.0% | |
| ACCAAGTAGCCAACTCTGGT+TGG | - | chr8_1:82657729-82657748 | Msa1219760:CDS | 50.0% | |
| CCAAGTAGCCAACTCTGGTT+GGG | - | chr8_1:82657730-82657749 | Msa1219760:CDS | 50.0% | |
| TGGAGCTGGCATAGCCATGA+GGG | + | chr8_1:82656076-82656095 | None:intergenic | 55.0% | |
| CGTGTAACTGGGAAGCCTTG+CGG | - | chr8_1:82656913-82656932 | Msa1219760:intron | 55.0% | |
| CCCAACCAGAGTTGGCTACT+TGG | + | chr8_1:82657733-82657752 | None:intergenic | 55.0% | |
| CAGCAAGGACAAGGACAGGG+AGG | - | chr8_1:82655277-82655296 | Msa1219760:three_prime_UTR | 60.0% | |
| CTGCCTTCTTCGCCTCTACC+AGG | - | chr8_1:82655505-82655524 | Msa1219760:CDS | 60.0% | |
| CTGGAGCTGGCATAGCCATG+AGG | + | chr8_1:82656077-82656096 | None:intergenic | 60.0% | |
| ! | CACAGGCTGAAGTCTGGAGC+TGG | + | chr8_1:82656090-82656109 | None:intergenic | 60.0% |
| ! | CGATGAGTTGACCCTTCCCC+TGG | + | chr8_1:82657769-82657788 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 82655146 | 82658090 | 82655146 | ID=Msa1219760;Name=Msa1219760 |
| chr8_1 | mRNA | 82655146 | 82658090 | 82655146 | ID=Msa1219760-mRNA-1;Parent=Msa1219760;Name=Msa1219760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=92|1|1|1|1|1|8|201|241 |
| chr8_1 | exon | 82655146 | 82655550 | 82655146 | ID=Msa1219760-mRNA-1:exon:29500;Parent=Msa1219760-mRNA-1 |
| chr8_1 | exon | 82655971 | 82656053 | 82655971 | ID=Msa1219760-mRNA-1:exon:29499;Parent=Msa1219760-mRNA-1 |
| chr8_1 | exon | 82656584 | 82656650 | 82656584 | ID=Msa1219760-mRNA-1:exon:29498;Parent=Msa1219760-mRNA-1 |
| chr8_1 | exon | 82656720 | 82656770 | 82656720 | ID=Msa1219760-mRNA-1:exon:29497;Parent=Msa1219760-mRNA-1 |
| chr8_1 | exon | 82657102 | 82657164 | 82657102 | ID=Msa1219760-mRNA-1:exon:29496;Parent=Msa1219760-mRNA-1 |
| chr8_1 | exon | 82657552 | 82657602 | 82657552 | ID=Msa1219760-mRNA-1:exon:29495;Parent=Msa1219760-mRNA-1 |
| chr8_1 | exon | 82657710 | 82657766 | 82657710 | ID=Msa1219760-mRNA-1:exon:29494;Parent=Msa1219760-mRNA-1 |
| chr8_1 | exon | 82657849 | 82658090 | 82657849 | ID=Msa1219760-mRNA-1:exon:29493;Parent=Msa1219760-mRNA-1 |
| chr8_1 | five_prime_UTR | 82657999 | 82658090 | 82657999 | ID=Msa1219760-mRNA-1:five_prime_utr;Parent=Msa1219760-mRNA-1 |
| chr8_1 | CDS | 82657849 | 82657998 | 82657849 | ID=Msa1219760-mRNA-1:cds;Parent=Msa1219760-mRNA-1 |
| chr8_1 | CDS | 82657710 | 82657766 | 82657710 | ID=Msa1219760-mRNA-1:cds;Parent=Msa1219760-mRNA-1 |
| chr8_1 | CDS | 82657552 | 82657602 | 82657552 | ID=Msa1219760-mRNA-1:cds;Parent=Msa1219760-mRNA-1 |
| chr8_1 | CDS | 82657102 | 82657164 | 82657102 | ID=Msa1219760-mRNA-1:cds;Parent=Msa1219760-mRNA-1 |
| chr8_1 | CDS | 82656720 | 82656770 | 82656720 | ID=Msa1219760-mRNA-1:cds;Parent=Msa1219760-mRNA-1 |
| chr8_1 | CDS | 82656584 | 82656650 | 82656584 | ID=Msa1219760-mRNA-1:cds;Parent=Msa1219760-mRNA-1 |
| chr8_1 | CDS | 82655971 | 82656053 | 82655971 | ID=Msa1219760-mRNA-1:cds;Parent=Msa1219760-mRNA-1 |
| chr8_1 | CDS | 82655347 | 82655550 | 82655347 | ID=Msa1219760-mRNA-1:cds;Parent=Msa1219760-mRNA-1 |
| chr8_1 | three_prime_UTR | 82655146 | 82655346 | 82655146 | ID=Msa1219760-mRNA-1:three_prime_utr;Parent=Msa1219760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
