Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802230 | XP_003612633.1 | 99.531 | 213 | 1 | 0 | 1 | 213 | 1 | 213 | 1.49e-157 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802230 | sp|Q9FHI1|MOB1A_ARATH | 92.453 | 212 | 16 | 0 | 1 | 212 | 1 | 212 | 3.68e-150 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802230 | B7FN82 | 99.531 | 213 | 1 | 0 | 1 | 213 | 1 | 213 | 7.12e-158 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024680 | Msa0802230 | -0.808900 | 2.467621e-50 | -8.615850e-47 |
| Msa0032840 | Msa0802230 | 0.816658 | 4.935953e-52 | -8.615850e-47 |
| Msa0049650 | Msa0802230 | 0.812983 | 3.221002e-51 | -8.615850e-47 |
| Msa0105420 | Msa0802230 | -0.808714 | 2.704408e-50 | -8.615850e-47 |
| Msa0120330 | Msa0802230 | -0.820900 | 5.371844e-53 | -8.615850e-47 |
| Msa0625530 | Msa0802230 | 0.833830 | 4.257239e-56 | -8.615850e-47 |
| Msa0638130 | Msa0802230 | 0.851290 | 9.774717e-61 | -8.615850e-47 |
| Msa0642650 | Msa0802230 | -0.805865 | 1.086008e-49 | -8.615850e-47 |
| Msa0654760 | Msa0802230 | 0.807872 | 4.087296e-50 | -8.615850e-47 |
| Msa0655660 | Msa0802230 | 0.814715 | 1.337798e-51 | -8.615850e-47 |
| Msa0669850 | Msa0802230 | -0.803220 | 3.867615e-49 | -8.615850e-47 |
| Msa0725480 | Msa0802230 | 0.809428 | 1.901736e-50 | -8.615850e-47 |
| Msa0754720 | Msa0802230 | 0.811574 | 6.540724e-51 | -8.615850e-47 |
| Msa0766100 | Msa0802230 | 0.813608 | 2.348532e-51 | -8.615850e-47 |
| Msa0802230 | Msa0820670 | -0.808448 | 3.082556e-50 | -8.615850e-47 |
| Msa0802230 | Msa0867050 | 0.827376 | 1.618644e-54 | -8.615850e-47 |
| Msa0802230 | Msa0903330 | -0.816119 | 6.517923e-52 | -8.615850e-47 |
| Msa0802230 | Msa0907700 | -0.813181 | 2.914663e-51 | -8.615850e-47 |
| Msa0802230 | Msa1049410 | -0.818473 | 1.924428e-52 | -8.615850e-47 |
| Msa0802230 | Msa1082700 | -0.803046 | 4.201903e-49 | -8.615850e-47 |
| Msa0802230 | Msa1083150 | -0.805835 | 1.101875e-49 | -8.615850e-47 |
| Msa0802230 | Msa1253930 | 0.810328 | 1.217234e-50 | -8.615850e-47 |
| Msa0802230 | Msa1264020 | -0.801209 | 1.003071e-48 | -8.615850e-47 |
| Msa0802230 | Msa1265960 | -0.800220 | 1.596538e-48 | -8.615850e-47 |
| Msa0802230 | Msa1269580 | 0.820184 | 7.845018e-53 | -8.615850e-47 |
| Msa0802230 | Msa1300870 | -0.813522 | 2.452652e-51 | -8.615850e-47 |
| Msa0802230 | Msa1307660 | 0.808406 | 3.145566e-50 | -8.615850e-47 |
| Msa0802230 | Msa1390310 | -0.814529 | 1.471148e-51 | -8.615850e-47 |
| Msa0802230 | Msa1403580 | 0.801628 | 8.231723e-49 | -8.615850e-47 |
| Msa0802230 | Msa1410430 | 0.826051 | 3.352971e-54 | -8.615850e-47 |
| Msa0802230 | Msa1429360 | 0.812783 | 3.563376e-51 | -8.615850e-47 |
| Msa0143080 | Msa0802230 | -0.805772 | 1.136015e-49 | -8.615850e-47 |
| Msa0145950 | Msa0802230 | -0.812157 | 4.882620e-51 | -8.615850e-47 |
| Msa0172350 | Msa0802230 | -0.828434 | 9.008788e-55 | -8.615850e-47 |
| Msa0172960 | Msa0802230 | 0.806607 | 7.578916e-50 | -8.615850e-47 |
| Msa0173820 | Msa0802230 | -0.806128 | 9.561929e-50 | -8.615850e-47 |
| Msa0173830 | Msa0802230 | -0.802930 | 4.440036e-49 | -8.615850e-47 |
| Msa0230550 | Msa0802230 | 0.810364 | 1.196092e-50 | -8.615850e-47 |
| Msa0236980 | Msa0802230 | -0.804473 | 2.123828e-49 | -8.615850e-47 |
| Msa0372670 | Msa0802230 | -0.800852 | 1.186460e-48 | -8.615850e-47 |
| Msa0376510 | Msa0802230 | -0.813635 | 2.316691e-51 | -8.615850e-47 |
| Msa0423360 | Msa0802230 | 0.815458 | 9.149977e-52 | -8.615850e-47 |
| Msa0436280 | Msa0802230 | 0.813434 | 2.564598e-51 | -8.615850e-47 |
| Msa0469910 | Msa0802230 | 0.805618 | 1.223768e-49 | -8.615850e-47 |
| Msa0242680 | Msa0802230 | -0.802782 | 4.765330e-49 | -8.615850e-47 |
| Msa0259560 | Msa0802230 | -0.809317 | 2.008761e-50 | -8.615850e-47 |
| Msa0267760 | Msa0802230 | -0.827768 | 1.303569e-54 | -8.615850e-47 |
| Msa0280900 | Msa0802230 | -0.818807 | 1.616522e-52 | -8.615850e-47 |
| Msa0524120 | Msa0802230 | -0.800392 | 1.472329e-48 | -8.615850e-47 |
| Msa0526710 | Msa0802230 | -0.820861 | 5.483449e-53 | -8.615850e-47 |
| Msa0546380 | Msa0802230 | -0.801073 | 1.069313e-48 | -8.615850e-47 |
| Msa0561540 | Msa0802230 | 0.803146 | 4.007438e-49 | -8.615850e-47 |
| Msa0562300 | Msa0802230 | 0.803120 | 4.055812e-49 | -8.615850e-47 |
| Msa0577940 | Msa0802230 | 0.816699 | 4.834330e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802230 | MtrunA17_Chr5g0409561 | 99.531 | 213 | 1 | 0 | 1 | 213 | 1 | 213 | 1.37e-161 | 444 |
| Msa0802230 | MtrunA17_Chr2g0300601 | 86.385 | 213 | 28 | 1 | 1 | 212 | 1 | 213 | 1.40e-142 | 396 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802230 | AT5G45550.1 | 92.453 | 212 | 16 | 0 | 1 | 212 | 1 | 212 | 3.74e-151 | 418 |
| Msa0802230 | AT4G19045.1 | 91.981 | 212 | 17 | 0 | 1 | 212 | 1 | 212 | 3.29e-149 | 413 |
| Msa0802230 | AT5G20440.1 | 59.799 | 199 | 77 | 3 | 15 | 212 | 18 | 214 | 4.34e-87 | 256 |
| Msa0802230 | AT5G20430.1 | 62.698 | 126 | 41 | 2 | 87 | 212 | 1 | 120 | 2.47e-55 | 172 |
Find 76 sgRNAs with CRISPR-Local
Find 341 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTTCCTGCCAACTTTA+AGG | 0.054380 | 5_3:+16418406 | Msa0802230:CDS |
| TAAGATTATCACTTTATTAT+TGG | 0.145416 | 5_3:-16419059 | None:intergenic |
| GTTTCTTCTTCTTCACTTTC+CGG | 0.161786 | 5_3:-16412987 | None:intergenic |
| ATTCAACATTTAATATATTA+TGG | 0.220288 | 5_3:-16418724 | None:intergenic |
| ACCAAGCTTCTGAGGGAATA+TGG | 0.247972 | 5_3:-16418290 | None:intergenic |
| TAATATATTAAATGTTGAAT+TGG | 0.261573 | 5_3:+16418727 | Msa0802230:exon |
| ATCTGTTGTGTTGAATAGTT+TGG | 0.290138 | 5_3:+16418844 | Msa0802230:three_prime_UTR |
| AAGTAAAACATTGGGATCTA+TGG | 0.307065 | 5_3:-16418935 | None:intergenic |
| GTTTGGGCTGATTGACAAAA+AGG | 0.310105 | 5_3:+16418671 | Msa0802230:CDS |
| ACTCTAGGTATGAGTATAGA+TGG | 0.331755 | 5_3:+16418170 | Msa0802230:intron |
| AAACACATTGATGCGACATT+AGG | 0.343649 | 5_3:+16416868 | Msa0802230:CDS |
| TTTACTTTAATTTAATGTAT+TGG | 0.351626 | 5_3:+16418951 | Msa0802230:three_prime_UTR |
| TCCTTAAAGTTGGCAGGAAA+TGG | 0.358892 | 5_3:-16418407 | None:intergenic |
| TCAGATGGGCCTCTTCTTTG+AGG | 0.381666 | 5_3:-16418508 | None:intergenic |
| AAAACATCAAACATGAAGTA+TGG | 0.384626 | 5_3:-16418996 | None:intergenic |
| AACCAGGTGAATCTGCTCTA+TGG | 0.388725 | 5_3:+16417130 | Msa0802230:CDS |
| AACACATTGATGCGACATTA+GGG | 0.403871 | 5_3:+16416869 | Msa0802230:CDS |
| AAAGTATGTAGAATATCTTA+TGG | 0.404082 | 5_3:+16418237 | Msa0802230:CDS |
| TTTGGAGCAGAAACCTCAAT+AGG | 0.410812 | 5_3:-16418217 | None:intergenic |
| ATAAGATATTCTACATACTT+TGG | 0.414597 | 5_3:-16418235 | None:intergenic |
| AATATATTAAATGTTGAATT+GGG | 0.415124 | 5_3:+16418728 | Msa0802230:exon |
| AAGTCTCAAATACATGCAAT+GGG | 0.431473 | 5_3:+16418909 | Msa0802230:three_prime_UTR |
| TACCGAAGAGGCTCATAGCT+TGG | 0.443415 | 5_3:-16413105 | None:intergenic |
| AGACATTGTGCGACAATTCT+CGG | 0.449230 | 5_3:-16417176 | None:intergenic |
| TTAAATTAAAGTAAAACATT+GGG | 0.453388 | 5_3:-16418943 | None:intergenic |
| ATGCGAGCTTTCTGTGATGA+AGG | 0.460178 | 5_3:-16418885 | None:intergenic |
| TTGTGAAATATCTTTATCCT+AGG | 0.466243 | 5_3:+16418768 | Msa0802230:three_prime_UTR |
| GCAAATTAAGAAACCTATTG+AGG | 0.466327 | 5_3:+16418204 | Msa0802230:CDS |
| GTGTTGAATAGTTTGGGAAC+AGG | 0.467008 | 5_3:+16418851 | Msa0802230:three_prime_UTR |
| AAAGTCTCAAATACATGCAA+TGG | 0.468965 | 5_3:+16418908 | Msa0802230:three_prime_UTR |
| ATTAAATTAAAGTAAAACAT+TGG | 0.470991 | 5_3:-16418944 | None:intergenic |
| TCTGTTGTGTTGAATAGTTT+GGG | 0.472925 | 5_3:+16418845 | Msa0802230:three_prime_UTR |
| GCTATGAGCCTCTTCGGTAT+TGG | 0.477543 | 5_3:+16413109 | Msa0802230:exon |
| ACCGAAGAGGCTCATAGCTT+GGG | 0.483960 | 5_3:-16413104 | None:intergenic |
| TTCACAATTCACAGTAAGCC+TGG | 0.486253 | 5_3:-16418752 | None:intergenic |
| AAACAAAGAAGACGGAAGAA+AGG | 0.492986 | 5_3:+16413014 | Msa0802230:five_prime_UTR |
| GACATTGTGCGACAATTCTC+GGG | 0.495014 | 5_3:-16417175 | None:intergenic |
| TCCATATTCCCTCAGAAGCT+TGG | 0.496080 | 5_3:+16418289 | Msa0802230:CDS |
| ACCCAAGCTATGAGCCTCTT+CGG | 0.500643 | 5_3:+16413103 | Msa0802230:exon |
| ACGACATCCTTAAAGTTGGC+AGG | 0.500857 | 5_3:-16418413 | None:intergenic |
| TTAAATGTTGAATTGGGACC+AGG | 0.510889 | 5_3:+16418734 | Msa0802230:exon |
| CTTCACGACATCCTTAAAGT+TGG | 0.514146 | 5_3:-16418417 | None:intergenic |
| TGAGCCTCTTCGGTATTGGC+AGG | 0.521396 | 5_3:+16413113 | Msa0802230:CDS |
| AAGTATTTACCAAGCTTCTG+AGG | 0.529658 | 5_3:-16418298 | None:intergenic |
| ATGTAGAATATCTTATGGAC+TGG | 0.538976 | 5_3:+16418242 | Msa0802230:CDS |
| GAAGCTGTAAAGCTACCTCC+CGG | 0.542561 | 5_3:+16416907 | Msa0802230:CDS |
| CCACTCATTCAAATCCTCCC+CGG | 0.543359 | 5_3:-16416926 | None:intergenic |
| TGTTGAATAGTTTGGGAACA+GGG | 0.545940 | 5_3:+16418852 | Msa0802230:three_prime_UTR |
| TGCGAGCTTTCTGTGATGAA+GGG | 0.551777 | 5_3:-16418884 | None:intergenic |
| TATGAGTATAGATGGGCAGA+TGG | 0.555205 | 5_3:+16418178 | Msa0802230:CDS |
| AATTGTCGCACAATGTCTGC+AGG | 0.560455 | 5_3:+16417181 | Msa0802230:CDS |
| CACTCATTCAAATCCTCCCC+GGG | 0.561983 | 5_3:-16416925 | None:intergenic |
| AAGCACTCCTTCTGGAAGCA+AGG | 0.569854 | 5_3:+16415736 | Msa0802230:CDS |
| CTCTAGGTATGAGTATAGAT+GGG | 0.572215 | 5_3:+16418171 | Msa0802230:intron |
| AAGCTGTAAAGCTACCTCCC+GGG | 0.575555 | 5_3:+16416908 | Msa0802230:CDS |
| AATTGTGAGCCTCAAAGAAG+AGG | 0.579374 | 5_3:+16418499 | Msa0802230:CDS |
| GCTTGAAGCATGTGTTCAGA+TGG | 0.579689 | 5_3:-16418523 | None:intergenic |
| AAACAAATAAACAAAGAAGA+CGG | 0.582466 | 5_3:+16413006 | Msa0802230:five_prime_UTR |
| GAACCAACCTTGCTTCCAGA+AGG | 0.597025 | 5_3:-16415743 | None:intergenic |
| CCGGGGAGGATTTGAATGAG+TGG | 0.598805 | 5_3:+16416926 | Msa0802230:CDS |
| GTTTCTATAAGCTCTTGAAG+TGG | 0.602626 | 5_3:-16418702 | None:intergenic |
| CATTAGGGAGTGGAAATCTG+AGG | 0.608703 | 5_3:+16416884 | Msa0802230:CDS |
| TCGTGAAGACAATATTTAAG+CGG | 0.611671 | 5_3:+16418432 | Msa0802230:CDS |
| AGTATTTACCAAGCTTCTGA+GGG | 0.614054 | 5_3:-16418297 | None:intergenic |
| TGCCATAGAGCAGATTCACC+TGG | 0.628858 | 5_3:-16417132 | None:intergenic |
| AGCTGTAAAGCTACCTCCCG+GGG | 0.630309 | 5_3:+16416909 | Msa0802230:CDS |
| ATTAGGGAGTGGAAATCTGA+GGG | 0.636791 | 5_3:+16416885 | Msa0802230:CDS |
| CTAACCTGCCAATACCGAAG+AGG | 0.643071 | 5_3:-16413117 | None:intergenic |
| ATTGATGCGACATTAGGGAG+TGG | 0.654161 | 5_3:+16416874 | Msa0802230:CDS |
| TGTAAAGCTACCTCCCGGGG+AGG | 0.655742 | 5_3:+16416912 | Msa0802230:CDS |
| CTTGAAGCATGTGTTCAGAT+GGG | 0.667441 | 5_3:-16418522 | None:intergenic |
| GGGAGTACAGAACTCTGTGA+GGG | 0.667733 | 5_3:-16417155 | None:intergenic |
| CGGGAGTACAGAACTCTGTG+AGG | 0.670311 | 5_3:-16417156 | None:intergenic |
| TCATTCAAATCCTCCCCGGG+AGG | 0.705832 | 5_3:-16416922 | None:intergenic |
| GATATATATGAGCATATACA+CGG | 0.719167 | 5_3:-16418460 | None:intergenic |
| AGTCTCAAATACATGCAATG+GGG | 0.736751 | 5_3:+16418910 | Msa0802230:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAATAAAATAAAAAAT+AGG | - | chr5_3:16416458-16416477 | None:intergenic | 0.0% |
| !! | TTGTTAAAAAAATCTAATAT+TGG | + | chr5_3:16414037-16414056 | Msa0802230:intron | 10.0% |
| !! | TCAAAAAAAAAAAAAAATAC+CGG | - | chr5_3:16415892-16415911 | None:intergenic | 10.0% |
| !!! | TTTGTTTCATTTATTTATTT+TGG | - | chr5_3:16416040-16416059 | None:intergenic | 10.0% |
| !! | CACATATATAAATATAATTT+AGG | + | chr5_3:16416669-16416688 | Msa0802230:intron | 10.0% |
| !! | ATTCAACATTTAATATATTA+TGG | - | chr5_3:16418727-16418746 | None:intergenic | 10.0% |
| !! | TAATATATTAAATGTTGAAT+TGG | + | chr5_3:16418727-16418746 | Msa0802230:exon | 10.0% |
| !! | AATATATTAAATGTTGAATT+GGG | + | chr5_3:16418728-16418747 | Msa0802230:exon | 10.0% |
| !! | TTAAATTAAAGTAAAACATT+GGG | - | chr5_3:16418946-16418965 | None:intergenic | 10.0% |
| !! | ATTAAATTAAAGTAAAACAT+TGG | - | chr5_3:16418947-16418966 | None:intergenic | 10.0% |
| !!! | TTTACTTTAATTTAATGTAT+TGG | + | chr5_3:16418951-16418970 | Msa0802230:three_prime_UTR | 10.0% |
| !!! | AATAAGAATTTTAAACTGAA+GGG | - | chr5_3:16413189-16413208 | None:intergenic | 15.0% |
| !! | TTAAATAAAACCACTAAAAT+TGG | - | chr5_3:16413990-16414009 | None:intergenic | 15.0% |
| !!! | AGAAAAAGTTTTAAGTTTTT+TGG | + | chr5_3:16414127-16414146 | Msa0802230:intron | 15.0% |
| !! | AAATTTAAACTAGACAAATA+AGG | - | chr5_3:16414158-16414177 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr5_3:16415334-16415353 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr5_3:16415333-16415352 | Msa0802230:intron | 15.0% |
| !!! | TAGTTTTAAAAGTTATACTT+TGG | + | chr5_3:16415357-16415376 | Msa0802230:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr5_3:16415460-16415479 | Msa0802230:intron | 15.0% |
| !! | TATAATAAAACATGCTTTAT+TGG | + | chr5_3:16416143-16416162 | Msa0802230:intron | 15.0% |
| !! | TATTTATAAATTTCGATCTT+CGG | + | chr5_3:16416469-16416488 | Msa0802230:intron | 15.0% |
| !!! | TTTTCTAAAAATTAAGGTTA+TGG | - | chr5_3:16416720-16416739 | None:intergenic | 15.0% |
| !!! | CATCAATTTTCTAAAAATTA+AGG | - | chr5_3:16416726-16416745 | None:intergenic | 15.0% |
| !! | GAATTGTATGAATATATAAT+TGG | - | chr5_3:16417052-16417071 | None:intergenic | 15.0% |
| !!! | TTATTTTTATGATCATTTAG+TGG | - | chr5_3:16417360-16417379 | None:intergenic | 15.0% |
| !! | TCATAAAAATAAGTGTAATA+CGG | + | chr5_3:16417368-16417387 | Msa0802230:intron | 15.0% |
| !!! | ATTTAAAACTACAATGATTT+TGG | - | chr5_3:16417724-16417743 | None:intergenic | 15.0% |
| !! | TAAGATTATCACTTTATTAT+TGG | - | chr5_3:16419062-16419081 | None:intergenic | 15.0% |
| !! | AAACAAATAAACAAAGAAGA+CGG | + | chr5_3:16413006-16413025 | Msa0802230:five_prime_UTR | 20.0% |
| !!! | GAATAAGAATTTTAAACTGA+AGG | - | chr5_3:16413190-16413209 | None:intergenic | 20.0% |
| !!! | TTTTTGAATTCTGATTGTAT+TGG | + | chr5_3:16413285-16413304 | Msa0802230:intron | 20.0% |
| !! | TATAATACATTCAACCAAAT+GGG | + | chr5_3:16414389-16414408 | Msa0802230:intron | 20.0% |
| !! | TTCACAATAATTATGAGAAT+AGG | - | chr5_3:16414603-16414622 | None:intergenic | 20.0% |
| !! | ATTACAATGTTGTTAAATAG+CGG | + | chr5_3:16414658-16414677 | Msa0802230:intron | 20.0% |
| !! | TATAAATAAATGCATGAAAG+TGG | - | chr5_3:16415222-16415241 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr5_3:16415343-16415362 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr5_3:16415420-16415439 | Msa0802230:intron | 20.0% |
| !! | AAATATCCCTTAGAAATAAA+GGG | - | chr5_3:16415768-16415787 | None:intergenic | 20.0% |
| !! | AAAATATCCCTTAGAAATAA+AGG | - | chr5_3:16415769-16415788 | None:intergenic | 20.0% |
| !!! | TTTATTTCTAAGGGATATTT+TGG | + | chr5_3:16415768-16415787 | Msa0802230:intron | 20.0% |
| !! | AATTCAATGAATTCAACTAA+TGG | + | chr5_3:16415963-16415982 | Msa0802230:intron | 20.0% |
| !! | AAATGCAAAATGTTTGAATA+TGG | + | chr5_3:16416412-16416431 | Msa0802230:intron | 20.0% |
| !! | GAATAGAAAATTACTTAGAT+TGG | + | chr5_3:16417305-16417324 | Msa0802230:intron | 20.0% |
| !!! | TTCGTAATTTGTTTATAACT+TGG | + | chr5_3:16417492-16417511 | Msa0802230:intron | 20.0% |
| !!! | TTGATAACTTTAATTGATCT+AGG | - | chr5_3:16417520-16417539 | None:intergenic | 20.0% |
| !!! | AATTTGAAATACTTTCTGAA+AGG | - | chr5_3:16417835-16417854 | None:intergenic | 20.0% |
| !!! | TATTCTGTTCTGAATTTTTA+TGG | + | chr5_3:16417961-16417980 | Msa0802230:intron | 20.0% |
| !!! | CTGTTTATTTTAAAATCAGT+GGG | - | chr5_3:16418080-16418099 | None:intergenic | 20.0% |
| !!! | ACTGTTTATTTTAAAATCAG+TGG | - | chr5_3:16418081-16418100 | None:intergenic | 20.0% |
| !! | CTACAAATCTATACAAAAAT+AGG | - | chr5_3:16418125-16418144 | None:intergenic | 20.0% |
| !! | ATAAGATATTCTACATACTT+TGG | - | chr5_3:16418238-16418257 | None:intergenic | 20.0% |
| !! | AAAGTATGTAGAATATCTTA+TGG | + | chr5_3:16418237-16418256 | Msa0802230:CDS | 20.0% |
| !!! | CACATTTTCTTAAAGATAAT+TGG | + | chr5_3:16418321-16418340 | Msa0802230:intron | 20.0% |
| !!! | TTGATGTTTTAGTATGAATT+TGG | + | chr5_3:16419009-16419028 | Msa0802230:three_prime_UTR | 20.0% |
| !! | AAGGGTATGAAGTTTAAAAA+TGG | - | chr5_3:16413171-16413190 | None:intergenic | 25.0% |
| ! | TGATTGATCCATTCTTAAAT+TGG | + | chr5_3:16413410-16413429 | Msa0802230:intron | 25.0% |
| ! | GATTGATCCATTCTTAAATT+GGG | + | chr5_3:16413411-16413430 | Msa0802230:intron | 25.0% |
| ! | AAATCAACCCAATTTAAGAA+TGG | - | chr5_3:16413421-16413440 | None:intergenic | 25.0% |
| !!! | TAAATTGGGTTGATTTGAAT+TGG | + | chr5_3:16413425-16413444 | Msa0802230:intron | 25.0% |
| !!! | TGTTACTTTGCATATATGTT+TGG | + | chr5_3:16413457-16413476 | Msa0802230:intron | 25.0% |
| !! | GTTACTTTGCATATATGTTT+GGG | + | chr5_3:16413458-16413477 | Msa0802230:intron | 25.0% |
| ! | TGCATAACAAATCATATAGA+TGG | - | chr5_3:16413597-16413616 | None:intergenic | 25.0% |
| ! | AATAAAACCACTAAAATTGG+AGG | - | chr5_3:16413987-16414006 | None:intergenic | 25.0% |
| ! | TCTAATCATTGTTGAAGTAT+TGG | + | chr5_3:16414102-16414121 | Msa0802230:intron | 25.0% |
| !! | CTAATCATTGTTGAAGTATT+GGG | + | chr5_3:16414103-16414122 | Msa0802230:intron | 25.0% |
| ! | CTATAATACATTCAACCAAA+TGG | + | chr5_3:16414388-16414407 | Msa0802230:intron | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+CGG | + | chr5_3:16414910-16414929 | Msa0802230:intron | 25.0% |
| ! | ATAACATTTGATGCTTATCT+AGG | + | chr5_3:16415187-16415206 | Msa0802230:intron | 25.0% |
| !!! | TGATCAGTATTGGTAATTTT+TGG | + | chr5_3:16415547-16415566 | Msa0802230:intron | 25.0% |
| !! | TAAGATTTTCCTTCATTTAG+AGG | + | chr5_3:16415841-16415860 | Msa0802230:intron | 25.0% |
| !! | AAGATTTTCCTTCATTTAGA+GGG | + | chr5_3:16415842-16415861 | Msa0802230:intron | 25.0% |
| ! | CAATATAAAAGACTCAATAC+AGG | + | chr5_3:16416177-16416196 | Msa0802230:intron | 25.0% |
| ! | TACATACATATTCGATCATT+AGG | - | chr5_3:16416240-16416259 | None:intergenic | 25.0% |
| !! | ATCATCAACTGTCAAATTTT+TGG | + | chr5_3:16416386-16416405 | Msa0802230:intron | 25.0% |
| ! | CGCAACATTTAAGAAATTTA+AGG | - | chr5_3:16417247-16417266 | None:intergenic | 25.0% |
| ! | TAAAAATAAGTGTAATACGG+TGG | + | chr5_3:16417371-16417390 | Msa0802230:intron | 25.0% |
| ! | ACAGTGTTAATTAATACACA+GGG | - | chr5_3:16417604-16417623 | None:intergenic | 25.0% |
| ! | AACAGTGTTAATTAATACAC+AGG | - | chr5_3:16417605-16417624 | None:intergenic | 25.0% |
| !!! | AAGTTACCATTTTTCGATAA+TGG | + | chr5_3:16417665-16417684 | Msa0802230:intron | 25.0% |
| !!! | ACTTAGGAGTGTTTATTATT+TGG | + | chr5_3:16417781-16417800 | Msa0802230:intron | 25.0% |
| ! | ATCATTATCATCGTCATTAA+AGG | - | chr5_3:16417907-16417926 | None:intergenic | 25.0% |
| !! | CAGATGAATTTAGAATGAAT+CGG | - | chr5_3:16417941-16417960 | None:intergenic | 25.0% |
| ! | GATATATATGAGCATATACA+CGG | - | chr5_3:16418463-16418482 | None:intergenic | 25.0% |
| !!! | ACTGTTGTTATTATTTTTGC+AGG | + | chr5_3:16418647-16418666 | Msa0802230:intron | 25.0% |
| !!! | TTATTATTTTTGCAGGAGTT+TGG | + | chr5_3:16418654-16418673 | Msa0802230:intron | 25.0% |
| !!! | TATTATTTTTGCAGGAGTTT+GGG | + | chr5_3:16418655-16418674 | Msa0802230:intron | 25.0% |
| ! | TTGTGAAATATCTTTATCCT+AGG | + | chr5_3:16418768-16418787 | Msa0802230:three_prime_UTR | 25.0% |
| ! | AAAACATCAAACATGAAGTA+TGG | - | chr5_3:16418999-16419018 | None:intergenic | 25.0% |
| !!! | TGTTTTAGTATGAATTTGGA+AGG | + | chr5_3:16419013-16419032 | Msa0802230:three_prime_UTR | 25.0% |
| TGATTGATACTTGATCATAC+TGG | - | chr5_3:16413509-16413528 | None:intergenic | 30.0% | |
| ATTGTTGATCTGTTTATCTG+CGG | + | chr5_3:16413635-16413654 | Msa0802230:intron | 30.0% | |
| ! | GTTTGTTAGACGATTTCAAA+CGG | + | chr5_3:16413846-16413865 | Msa0802230:intron | 30.0% |
| TTCGACAAAATAAACTACAC+AGG | - | chr5_3:16413964-16413983 | None:intergenic | 30.0% | |
| ATATCCAATTAACCTATACG+AGG | + | chr5_3:16414199-16414218 | Msa0802230:intron | 30.0% | |
| ACAAATTTATTGCATCCACA+GGG | - | chr5_3:16414465-16414484 | None:intergenic | 30.0% | |
| GGATGCAATAAATTTGTGAT+TGG | + | chr5_3:16414468-16414487 | Msa0802230:intron | 30.0% | |
| GTGCAAAATTCATCTCATAT+AGG | - | chr5_3:16414581-16414600 | None:intergenic | 30.0% | |
| TCTATCAGTGTTATCAATTG+TGG | - | chr5_3:16414989-16415008 | None:intergenic | 30.0% | |
| CCAGTATAAAAATGTCTAGA+TGG | - | chr5_3:16415068-16415087 | None:intergenic | 30.0% | |
| ! | CCATCTAGACATTTTTATAC+TGG | + | chr5_3:16415065-16415084 | Msa0802230:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr5_3:16415251-16415270 | None:intergenic | 30.0% |
| AGTGAAACTTTCCATTATAC+TGG | + | chr5_3:16415574-16415593 | Msa0802230:intron | 30.0% | |
| !! | TGACAAAAGTACCAGTATAA+TGG | - | chr5_3:16415588-16415607 | None:intergenic | 30.0% |
| !! | TTGGTTCCCTTTATTTCTAA+GGG | + | chr5_3:16415759-16415778 | Msa0802230:intron | 30.0% |
| !! | CCTTTTGAAAACCGTATTTA+AGG | - | chr5_3:16416004-16416023 | None:intergenic | 30.0% |
| ! | CCTTAAATACGGTTTTCAAA+AGG | + | chr5_3:16416001-16416020 | Msa0802230:intron | 30.0% |
| ! | TCCTTAAAGTATTTACAAGC+TGG | + | chr5_3:16416109-16416128 | Msa0802230:intron | 30.0% |
| TCCAGCTTGTAAATACTTTA+AGG | - | chr5_3:16416113-16416132 | None:intergenic | 30.0% | |
| ! | TTAAAGTATTTACAAGCTGG+AGG | + | chr5_3:16416112-16416131 | Msa0802230:intron | 30.0% |
| ! | TAATCTTGTTCTCTGAAAGT+TGG | - | chr5_3:16416774-16416793 | None:intergenic | 30.0% |
| !!! | TGCTGTTACATTTTAATTGC+AGG | + | chr5_3:16416831-16416850 | Msa0802230:intron | 30.0% |
| !!! | GCTGTTACATTTTAATTGCA+GGG | + | chr5_3:16416832-16416851 | Msa0802230:intron | 30.0% |
| AAAATCAACAGCTGAAATGT+GGG | - | chr5_3:16417107-16417126 | None:intergenic | 30.0% | |
| AAAAATCAACAGCTGAAATG+TGG | - | chr5_3:16417108-16417127 | None:intergenic | 30.0% | |
| TCAGTTAACTATGCATACTT+GGG | - | chr5_3:16417208-16417227 | None:intergenic | 30.0% | |
| ATCAGTTAACTATGCATACT+TGG | - | chr5_3:16417209-16417228 | None:intergenic | 30.0% | |
| ! | TCGTCATAGAAGAAGATTTT+TGG | + | chr5_3:16417450-16417469 | Msa0802230:intron | 30.0% |
| ATGTGACAGATAATCAAGAT+AGG | - | chr5_3:16417551-16417570 | None:intergenic | 30.0% | |
| ! | ACAGGGCATTAAATTAAAAC+AGG | - | chr5_3:16417587-16417606 | None:intergenic | 30.0% |
| !! | ATTAACACTGTTTTTCGTGA+AGG | + | chr5_3:16417613-16417632 | Msa0802230:intron | 30.0% |
| AAGGAATGCTGTTCATTATA+AGG | - | chr5_3:16417888-16417907 | None:intergenic | 30.0% | |
| GTCTATTACATGAAAACTCT+AGG | + | chr5_3:16418155-16418174 | Msa0802230:intron | 30.0% | |
| GCAAATTAAGAAACCTATTG+AGG | + | chr5_3:16418204-16418223 | Msa0802230:CDS | 30.0% | |
| ATGTAGAATATCTTATGGAC+TGG | + | chr5_3:16418242-16418261 | Msa0802230:CDS | 30.0% | |
| TCGTGAAGACAATATTTAAG+CGG | + | chr5_3:16418432-16418451 | Msa0802230:CDS | 30.0% | |
| ! | GATTAATTTTTATGCCCTGA+CGG | - | chr5_3:16418621-16418640 | None:intergenic | 30.0% |
| !!! | TGATTTTAGTTATGCTTCCT+AGG | - | chr5_3:16418788-16418807 | None:intergenic | 30.0% |
| ATCTGTTGTGTTGAATAGTT+TGG | + | chr5_3:16418844-16418863 | Msa0802230:three_prime_UTR | 30.0% | |
| TCTGTTGTGTTGAATAGTTT+GGG | + | chr5_3:16418845-16418864 | Msa0802230:three_prime_UTR | 30.0% | |
| AAAGTCTCAAATACATGCAA+TGG | + | chr5_3:16418908-16418927 | Msa0802230:three_prime_UTR | 30.0% | |
| AAGTCTCAAATACATGCAAT+GGG | + | chr5_3:16418909-16418928 | Msa0802230:three_prime_UTR | 30.0% | |
| AAGTAAAACATTGGGATCTA+TGG | - | chr5_3:16418938-16418957 | None:intergenic | 30.0% | |
| AAACAAAGAAGACGGAAGAA+AGG | + | chr5_3:16413014-16413033 | Msa0802230:five_prime_UTR | 35.0% | |
| CAGAAATCTACACTTAGCTA+CGG | - | chr5_3:16413886-16413905 | None:intergenic | 35.0% | |
| AATTGGATATCAGAATCAGC+AGG | - | chr5_3:16414189-16414208 | None:intergenic | 35.0% | |
| !! | TGTTAGAGAGTATTGGAAAG+AGG | + | chr5_3:16414341-16414360 | Msa0802230:intron | 35.0% |
| !! | GTTAGAGAGTATTGGAAAGA+GGG | + | chr5_3:16414342-16414361 | Msa0802230:intron | 35.0% |
| TACATTCAACCAAATGGGTA+TGG | + | chr5_3:16414394-16414413 | Msa0802230:intron | 35.0% | |
| ACATTCAACCAAATGGGTAT+GGG | + | chr5_3:16414395-16414414 | Msa0802230:intron | 35.0% | |
| AATATAACCCCATACCCATT+TGG | - | chr5_3:16414406-16414425 | None:intergenic | 35.0% | |
| GGACAAAGAAACACAGAAAA+GGG | - | chr5_3:16414435-16414454 | None:intergenic | 35.0% | |
| AAATTTATTGCATCCACAGG+GGG | - | chr5_3:16414463-16414482 | None:intergenic | 35.0% | |
| CAAATTTATTGCATCCACAG+GGG | - | chr5_3:16414464-16414483 | None:intergenic | 35.0% | |
| CACAAATTTATTGCATCCAC+AGG | - | chr5_3:16414466-16414485 | None:intergenic | 35.0% | |
| TGAAGGGAGGAACAATATTT+CGG | - | chr5_3:16414523-16414542 | None:intergenic | 35.0% | |
| AATATTGTTCCTCCCTTCAA+TGG | + | chr5_3:16414524-16414543 | Msa0802230:intron | 35.0% | |
| AGTCAAAAAGAGCCATTGAA+GGG | - | chr5_3:16414539-16414558 | None:intergenic | 35.0% | |
| TATAGGAAATGTGTTCCCAT+CGG | - | chr5_3:16414564-16414583 | None:intergenic | 35.0% | |
| GAAATGCTATAGAAGAAGCA+TGG | - | chr5_3:16415041-16415060 | None:intergenic | 35.0% | |
| ! | AAGTGAAGAGCATATAGTAG+TGG | - | chr5_3:16415161-16415180 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr5_3:16415382-16415401 | Msa0802230:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr5_3:16415386-16415405 | Msa0802230:intron | 35.0% |
| !!! | GACACTCATTTTGAAACAGA+GGG | + | chr5_3:16415490-16415509 | Msa0802230:intron | 35.0% |
| CAGTAGAGAATGATCAGTAT+TGG | + | chr5_3:16415537-16415556 | Msa0802230:intron | 35.0% | |
| GTCGAAATACAAAAGTAGTG+TGG | - | chr5_3:16415667-16415686 | None:intergenic | 35.0% | |
| !! | GTTGGTTCCCTTTATTTCTA+AGG | + | chr5_3:16415758-16415777 | Msa0802230:intron | 35.0% |
| AAAAGCAAGACCGGTATTAA+TGG | + | chr5_3:16415919-16415938 | Msa0802230:intron | 35.0% | |
| AAAGCAAGACCGGTATTAAT+GGG | + | chr5_3:16415920-16415939 | Msa0802230:intron | 35.0% | |
| !! | TATTTAAGGCAAGACGCTTT+TGG | - | chr5_3:16415990-16416009 | None:intergenic | 35.0% |
| ! | AAAGCGTCTTGCCTTAAATA+CGG | + | chr5_3:16415990-16416009 | Msa0802230:intron | 35.0% |
| ATCATTAGGTTCTCCATTTG+CGG | - | chr5_3:16416226-16416245 | None:intergenic | 35.0% | |
| TAGAGATACGGAATCTACTT+TGG | - | chr5_3:16416347-16416366 | None:intergenic | 35.0% | |
| AGTAGATTCCGTATCTCTAT+TGG | + | chr5_3:16416348-16416367 | Msa0802230:intron | 35.0% | |
| ACGCATAACCAATAGAGATA+CGG | - | chr5_3:16416359-16416378 | None:intergenic | 35.0% | |
| TAAATTTCGATCTTCGGATG+AGG | + | chr5_3:16416475-16416494 | Msa0802230:intron | 35.0% | |
| AAATTTCGATCTTCGGATGA+GGG | + | chr5_3:16416476-16416495 | Msa0802230:intron | 35.0% | |
| ! | ACAGTGTAAGAGTATATGAG+TGG | + | chr5_3:16416565-16416584 | Msa0802230:intron | 35.0% |
| ! | CAGTGTAAGAGTATATGAGT+GGG | + | chr5_3:16416566-16416585 | Msa0802230:intron | 35.0% |
| ! | AGTGTAAGAGTATATGAGTG+GGG | + | chr5_3:16416567-16416586 | Msa0802230:intron | 35.0% |
| GTAACTCATAATCGTTGCTA+AGG | - | chr5_3:16416636-16416655 | None:intergenic | 35.0% | |
| AAACACATTGATGCGACATT+AGG | + | chr5_3:16416868-16416887 | Msa0802230:CDS | 35.0% | |
| AACACATTGATGCGACATTA+GGG | + | chr5_3:16416869-16416888 | Msa0802230:CDS | 35.0% | |
| GCAAAAGCAAACATCAACAA+CGG | - | chr5_3:16417010-16417029 | None:intergenic | 35.0% | |
| !!! | AGCTGTTGATTTTTTCAACC+AGG | + | chr5_3:16417114-16417133 | Msa0802230:intron | 35.0% |
| ACCACTTTGCCATAAATTGT+TGG | + | chr5_3:16417416-16417435 | Msa0802230:intron | 35.0% | |
| TACAAGGAGCCAACAATTTA+TGG | - | chr5_3:16417428-16417447 | None:intergenic | 35.0% | |
| TTCTTCTATGACGAGATACA+AGG | - | chr5_3:16417444-16417463 | None:intergenic | 35.0% | |
| AGCACTCCATTATCGAAAAA+TGG | - | chr5_3:16417674-16417693 | None:intergenic | 35.0% | |
| ! | ACTGTCTAGATTCTAGAAAC+TGG | - | chr5_3:16417761-16417780 | None:intergenic | 35.0% |
| CTAGAATCTAGACAGTACTT+AGG | + | chr5_3:16417765-16417784 | Msa0802230:intron | 35.0% | |
| ! | TAAAGAAGGGATGCATTTTG+AGG | + | chr5_3:16417996-16418015 | Msa0802230:intron | 35.0% |
| ACTCTAGGTATGAGTATAGA+TGG | + | chr5_3:16418170-16418189 | Msa0802230:intron | 35.0% | |
| CTCTAGGTATGAGTATAGAT+GGG | + | chr5_3:16418171-16418190 | Msa0802230:intron | 35.0% | |
| AGTATTTACCAAGCTTCTGA+GGG | - | chr5_3:16418300-16418319 | None:intergenic | 35.0% | |
| AAGTATTTACCAAGCTTCTG+AGG | - | chr5_3:16418301-16418320 | None:intergenic | 35.0% | |
| ! | CATTCTTGTTGTATGACCTA+TGG | + | chr5_3:16418369-16418388 | Msa0802230:intron | 35.0% |
| AGCATAAAAATTACACCGTC+AGG | + | chr5_3:16418603-16418622 | Msa0802230:intron | 35.0% | |
| GCATAAAAATTACACCGTCA+GGG | + | chr5_3:16418604-16418623 | Msa0802230:intron | 35.0% | |
| GTTTCTATAAGCTCTTGAAG+TGG | - | chr5_3:16418705-16418724 | None:intergenic | 35.0% | |
| TTAAATGTTGAATTGGGACC+AGG | + | chr5_3:16418734-16418753 | Msa0802230:exon | 35.0% | |
| TGTTGAATAGTTTGGGAACA+GGG | + | chr5_3:16418852-16418871 | Msa0802230:three_prime_UTR | 35.0% | |
| AGTCTCAAATACATGCAATG+GGG | + | chr5_3:16418910-16418929 | Msa0802230:three_prime_UTR | 35.0% | |
| ! | CATGAAGTATGGTTTTCAGT+TGG | - | chr5_3:16418988-16419007 | None:intergenic | 35.0% |
| !! | TGAATTTGGAAGGCTGTTTT+TGG | + | chr5_3:16419023-16419042 | Msa0802230:three_prime_UTR | 35.0% |
| ACTGTCTCATGAGTGATGTA+TGG | + | chr5_3:16413745-16413764 | Msa0802230:intron | 40.0% | |
| ! | TGTCGAACCTCCAATTTTAG+TGG | + | chr5_3:16413977-16413996 | Msa0802230:intron | 40.0% |
| CACTCCTCGTATAGGTTAAT+TGG | - | chr5_3:16414206-16414225 | None:intergenic | 40.0% | |
| ACAATGAGTTCACTCAGTGT+TGG | - | chr5_3:16414246-16414265 | None:intergenic | 40.0% | |
| TCATTGTGAGGATCACACTT+TGG | + | chr5_3:16414259-16414278 | Msa0802230:intron | 40.0% | |
| ! | TGAGGATCACACTTTGGAAA+TGG | + | chr5_3:16414265-16414284 | Msa0802230:intron | 40.0% |
| ! | GAGGATCACACTTTGGAAAT+GGG | + | chr5_3:16414266-16414285 | Msa0802230:intron | 40.0% |
| GAAATGGGTCCAACATAAAG+TGG | + | chr5_3:16414281-16414300 | Msa0802230:intron | 40.0% | |
| TTGTAGGGTGAAATCCATGT+GGG | - | chr5_3:16414312-16414331 | None:intergenic | 40.0% | |
| CATTCAACCAAATGGGTATG+GGG | + | chr5_3:16414396-16414415 | Msa0802230:intron | 40.0% | |
| GGGACAAAGAAACACAGAAA+AGG | - | chr5_3:16414436-16414455 | None:intergenic | 40.0% | |
| AATTTATTGCATCCACAGGG+GGG | - | chr5_3:16414462-16414481 | None:intergenic | 40.0% | |
| CAGTCAAAAAGAGCCATTGA+AGG | - | chr5_3:16414540-16414559 | None:intergenic | 40.0% | |
| ATAGCAGTGCTATAGTGTAG+CGG | + | chr5_3:16414846-16414865 | Msa0802230:intron | 40.0% | |
| GCTATCACACAATTGTGTAG+CGG | + | chr5_3:16414934-16414953 | Msa0802230:intron | 40.0% | |
| TTGTGGATCACAGAAGATAG+TGG | - | chr5_3:16414972-16414991 | None:intergenic | 40.0% | |
| !! | TCCTAGTCTTTTCGTCTGAT+TGG | + | chr5_3:16415011-16415030 | Msa0802230:intron | 40.0% |
| ACCAATCAGACGAAAAGACT+AGG | - | chr5_3:16415015-16415034 | None:intergenic | 40.0% | |
| TCCTTTCCTTGCCTTCTTTA+CGG | + | chr5_3:16415094-16415113 | Msa0802230:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr5_3:16415247-16415266 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr5_3:16415385-16415404 | Msa0802230:intron | 40.0% |
| !!! | CGACACTCATTTTGAAACAG+AGG | + | chr5_3:16415489-16415508 | Msa0802230:intron | 40.0% |
| CTGTTGCAGAATCATTTGTC+AGG | - | chr5_3:16415689-16415708 | None:intergenic | 40.0% | |
| !!! | CAGAAGGAGTGCTTTTTTTG+GGG | - | chr5_3:16415730-16415749 | None:intergenic | 40.0% |
| !!! | CCAGAAGGAGTGCTTTTTTT+GGG | - | chr5_3:16415731-16415750 | None:intergenic | 40.0% |
| !!! | TCCAGAAGGAGTGCTTTTTT+TGG | - | chr5_3:16415732-16415751 | None:intergenic | 40.0% |
| ! | CTTGACTTGAAAAGCAAGAC+CGG | + | chr5_3:16415870-16415889 | Msa0802230:intron | 40.0% |
| GAAGAAGCTAAAAGCAAGAC+CGG | + | chr5_3:16415910-16415929 | Msa0802230:intron | 40.0% | |
| AAGCAAGACCGGTATTAATG+GGG | + | chr5_3:16415921-16415940 | Msa0802230:intron | 40.0% | |
| TCATTAGGTTCTCCATTTGC+GGG | - | chr5_3:16416225-16416244 | None:intergenic | 40.0% | |
| AATGTTTGAATATGGCCAGC+TGG | + | chr5_3:16416420-16416439 | Msa0802230:intron | 40.0% | |
| AGGAAGAAAAAAAAGCCAGC+TGG | - | chr5_3:16416438-16416457 | None:intergenic | 40.0% | |
| ! | TAAGAGTATATGAGTGGGGA+GGG | + | chr5_3:16416571-16416590 | Msa0802230:intron | 40.0% |
| ATTAGGGAGTGGAAATCTGA+GGG | + | chr5_3:16416885-16416904 | Msa0802230:CDS | 40.0% | |
| AGACATTGTGCGACAATTCT+CGG | - | chr5_3:16417179-16417198 | None:intergenic | 40.0% | |
| !! | GTGTAATACGGTGGATTGTT+TGG | + | chr5_3:16417380-16417399 | Msa0802230:intron | 40.0% |
| GCCAACAATTTATGGCAAAG+TGG | - | chr5_3:16417420-16417439 | None:intergenic | 40.0% | |
| ! | GATTCTAGAAACTGGACAAC+TGG | - | chr5_3:16417753-16417772 | None:intergenic | 40.0% |
| TATGAGTATAGATGGGCAGA+TGG | + | chr5_3:16418178-16418197 | Msa0802230:CDS | 40.0% | |
| ! | TTTGGAGCAGAAACCTCAAT+AGG | - | chr5_3:16418220-16418239 | None:intergenic | 40.0% |
| TATGACCTATGGAATCATGC+AGG | + | chr5_3:16418380-16418399 | Msa0802230:intron | 40.0% | |
| TCCATTTCCTGCCAACTTTA+AGG | + | chr5_3:16418406-16418425 | Msa0802230:CDS | 40.0% | |
| TCCTTAAAGTTGGCAGGAAA+TGG | - | chr5_3:16418410-16418429 | None:intergenic | 40.0% | |
| CTTCACGACATCCTTAAAGT+TGG | - | chr5_3:16418420-16418439 | None:intergenic | 40.0% | |
| AATTGTGAGCCTCAAAGAAG+AGG | + | chr5_3:16418499-16418518 | Msa0802230:CDS | 40.0% | |
| CTTGAAGCATGTGTTCAGAT+GGG | - | chr5_3:16418525-16418544 | None:intergenic | 40.0% | |
| GTTTGGGCTGATTGACAAAA+AGG | + | chr5_3:16418671-16418690 | Msa0802230:CDS | 40.0% | |
| GCTGATTGACAAAAAGGAAC+TGG | + | chr5_3:16418677-16418696 | Msa0802230:CDS | 40.0% | |
| TTCACAATTCACAGTAAGCC+TGG | - | chr5_3:16418755-16418774 | None:intergenic | 40.0% | |
| GTGTTGAATAGTTTGGGAAC+AGG | + | chr5_3:16418851-16418870 | Msa0802230:three_prime_UTR | 40.0% | |
| ! | TTGGGTTAGAGAGAGAGAGA+GGG | - | chr5_3:16413089-16413108 | None:intergenic | 45.0% |
| ! | ACTCAGTGTTGGAAAGAGAG+CGG | - | chr5_3:16414235-16414254 | None:intergenic | 45.0% |
| CACTGAGTGAACTCATTGTG+AGG | + | chr5_3:16414247-16414266 | Msa0802230:intron | 45.0% | |
| TGGGTCTCACCACTTTATGT+TGG | - | chr5_3:16414293-16414312 | None:intergenic | 45.0% | |
| ATAAAGTGGTGAGACCCACA+TGG | + | chr5_3:16414295-16414314 | Msa0802230:intron | 45.0% | |
| CTTGTAGGGTGAAATCCATG+TGG | - | chr5_3:16414313-16414332 | None:intergenic | 45.0% | |
| CTAACACTCGCTCTCTTGTA+GGG | - | chr5_3:16414327-16414346 | None:intergenic | 45.0% | |
| TCTAACACTCGCTCTCTTGT+AGG | - | chr5_3:16414328-16414347 | None:intergenic | 45.0% | |
| ! | GAGCGAGTGTTAGAGAGTAT+TGG | + | chr5_3:16414334-16414353 | Msa0802230:intron | 45.0% |
| ATTTATTGCATCCACAGGGG+GGG | - | chr5_3:16414461-16414480 | None:intergenic | 45.0% | |
| CAAAAAGAGCCATTGAAGGG+AGG | - | chr5_3:16414536-16414555 | None:intergenic | 45.0% | |
| !! | GCTCTTTTTGACTGACCGAT+GGG | + | chr5_3:16414546-16414565 | Msa0802230:intron | 45.0% |
| CCACTATGAAAACAGCGCTA+CGG | - | chr5_3:16414769-16414788 | None:intergenic | 45.0% | |
| TCCGTAAAGAAGGCAAGGAA+AGG | - | chr5_3:16415098-16415117 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr5_3:16415248-16415267 | None:intergenic | 45.0% |
| !!! | AAGGAGTGCTTTTTTTGGGG+CGG | - | chr5_3:16415727-16415746 | None:intergenic | 45.0% |
| !! | CCCAAAAAAAGCACTCCTTC+TGG | + | chr5_3:16415728-16415747 | Msa0802230:CDS | 45.0% |
| AAGGTCGTCCCTCTAAATGA+AGG | - | chr5_3:16415853-16415872 | None:intergenic | 45.0% | |
| !!! | CGGTCTTGCTTTTCAAGTCA+AGG | - | chr5_3:16415872-16415891 | None:intergenic | 45.0% |
| TTCCCTCTCCCCATTAATAC+CGG | - | chr5_3:16415932-16415951 | None:intergenic | 45.0% | |
| ATTAATGGGGAGAGGGAATG+CGG | + | chr5_3:16415934-16415953 | Msa0802230:intron | 45.0% | |
| ! | AGGCTACTTTGAGTCACTGA+AGG | + | chr5_3:16416197-16416216 | Msa0802230:intron | 45.0% |
| GTGATTTCATGCAAGGAGTG+TGG | + | chr5_3:16416518-16416537 | Msa0802230:intron | 45.0% | |
| ! | CAAGGAGTGTGGTTGTAACT+TGG | + | chr5_3:16416529-16416548 | Msa0802230:intron | 45.0% |
| ! | GTAAGAGTATATGAGTGGGG+AGG | + | chr5_3:16416570-16416589 | Msa0802230:intron | 45.0% |
| ! | AAGAGTATATGAGTGGGGAG+GGG | + | chr5_3:16416572-16416591 | Msa0802230:intron | 45.0% |
| ATTGATGCGACATTAGGGAG+TGG | + | chr5_3:16416874-16416893 | Msa0802230:CDS | 45.0% | |
| CATTAGGGAGTGGAAATCTG+AGG | + | chr5_3:16416884-16416903 | Msa0802230:CDS | 45.0% | |
| AACCAGGTGAATCTGCTCTA+TGG | + | chr5_3:16417130-16417149 | Msa0802230:CDS | 45.0% | |
| GACATTGTGCGACAATTCTC+GGG | - | chr5_3:16417178-16417197 | None:intergenic | 45.0% | |
| AATTGTCGCACAATGTCTGC+AGG | + | chr5_3:16417181-16417200 | Msa0802230:CDS | 45.0% | |
| TCCATATTCCCTCAGAAGCT+TGG | + | chr5_3:16418289-16418308 | Msa0802230:CDS | 45.0% | |
| ! | ACCAAGCTTCTGAGGGAATA+TGG | - | chr5_3:16418293-16418312 | None:intergenic | 45.0% |
| GAGAACCTGCATGATTCCAT+AGG | - | chr5_3:16418388-16418407 | None:intergenic | 45.0% | |
| ACGACATCCTTAAAGTTGGC+AGG | - | chr5_3:16418416-16418435 | None:intergenic | 45.0% | |
| GCTTGAAGCATGTGTTCAGA+TGG | - | chr5_3:16418526-16418545 | None:intergenic | 45.0% | |
| TGCGAGCTTTCTGTGATGAA+GGG | - | chr5_3:16418887-16418906 | None:intergenic | 45.0% | |
| ATGCGAGCTTTCTGTGATGA+AGG | - | chr5_3:16418888-16418907 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTGAAAA+TGG | - | chr5_3:16417861-16417880 | None:intergenic | 5.0% |
| ! | TGGGTTAGAGAGAGAGAGAG+GGG | - | chr5_3:16413088-16413107 | None:intergenic | 50.0% |
| ! | CTTGGGTTAGAGAGAGAGAG+AGG | - | chr5_3:16413090-16413109 | None:intergenic | 50.0% |
| ACCCAAGCTATGAGCCTCTT+CGG | + | chr5_3:16413103-16413122 | Msa0802230:exon | 50.0% | |
| ACCGAAGAGGCTCATAGCTT+GGG | - | chr5_3:16413107-16413126 | None:intergenic | 50.0% | |
| TACCGAAGAGGCTCATAGCT+TGG | - | chr5_3:16413108-16413127 | None:intergenic | 50.0% | |
| GCTATGAGCCTCTTCGGTAT+TGG | + | chr5_3:16413109-16413128 | Msa0802230:exon | 50.0% | |
| CTAACCTGCCAATACCGAAG+AGG | - | chr5_3:16413120-16413139 | None:intergenic | 50.0% | |
| GTTCACTGCTGATGCATCAG+TGG | - | chr5_3:16414076-16414095 | None:intergenic | 50.0% | |
| !! | GGCTCTTTTTGACTGACCGA+TGG | + | chr5_3:16414545-16414564 | Msa0802230:intron | 50.0% |
| ! | GCTACTGTGCTGTTGCATAG+TGG | + | chr5_3:16414682-16414701 | Msa0802230:intron | 50.0% |
| !! | CCGTAGCGCTGTTTTCATAG+TGG | + | chr5_3:16414766-16414785 | Msa0802230:intron | 50.0% |
| ! | CCATTCAGTGATGTCGGTTG+CGG | - | chr5_3:16414821-16414840 | None:intergenic | 50.0% |
| TCGCTGCCATTCAGTGATGT+CGG | - | chr5_3:16414827-16414846 | None:intergenic | 50.0% | |
| GGACATCCGTAAAGAAGGCA+AGG | - | chr5_3:16415103-16415122 | None:intergenic | 50.0% | |
| CGACTGGACATCCGTAAAGA+AGG | - | chr5_3:16415108-16415127 | None:intergenic | 50.0% | |
| TCTTTACGGATGTCCAGTCG+TGG | + | chr5_3:16415108-16415127 | Msa0802230:intron | 50.0% | |
| AACAATCCCTTCACCACGAC+TGG | - | chr5_3:16415124-16415143 | None:intergenic | 50.0% | |
| !!! | TTTTGGGGCGGAATGTTCTC+TGG | - | chr5_3:16415715-16415734 | None:intergenic | 50.0% |
| ! | AAGCACTCCTTCTGGAAGCA+AGG | + | chr5_3:16415736-16415755 | Msa0802230:CDS | 50.0% |
| ! | ACTCCTTCTGGAAGCAAGGT+TGG | + | chr5_3:16415740-16415759 | Msa0802230:intron | 50.0% |
| GAACCAACCTTGCTTCCAGA+AGG | - | chr5_3:16415746-16415765 | None:intergenic | 50.0% | |
| AGACCGGTATTAATGGGGAG+AGG | + | chr5_3:16415926-16415945 | Msa0802230:intron | 50.0% | |
| GACCGGTATTAATGGGGAGA+GGG | + | chr5_3:16415927-16415946 | Msa0802230:intron | 50.0% | |
| TTCGATCTTCGGATGAGGGA+TGG | + | chr5_3:16416480-16416499 | Msa0802230:intron | 50.0% | |
| ATCTTCGGATGAGGGATGGT+GGG | + | chr5_3:16416484-16416503 | Msa0802230:intron | 50.0% | |
| GGTGAGGGTGATTTCATGCA+AGG | + | chr5_3:16416511-16416530 | Msa0802230:intron | 50.0% | |
| GGAGTGTGGTTGTAACTTGG+AGG | + | chr5_3:16416532-16416551 | Msa0802230:intron | 50.0% | |
| GTGTGGTTGTAACTTGGAGG+AGG | + | chr5_3:16416535-16416554 | Msa0802230:intron | 50.0% | |
| GAAGCTGTAAAGCTACCTCC+CGG | + | chr5_3:16416907-16416926 | Msa0802230:CDS | 50.0% | |
| AAGCTGTAAAGCTACCTCCC+GGG | + | chr5_3:16416908-16416927 | Msa0802230:CDS | 50.0% | |
| CACTCATTCAAATCCTCCCC+GGG | - | chr5_3:16416928-16416947 | None:intergenic | 50.0% | |
| CCACTCATTCAAATCCTCCC+CGG | - | chr5_3:16416929-16416948 | None:intergenic | 50.0% | |
| TCAACAGCTGAAATGTGGGC+AGG | - | chr5_3:16417103-16417122 | None:intergenic | 50.0% | |
| TGCCATAGAGCAGATTCACC+TGG | - | chr5_3:16417135-16417154 | None:intergenic | 50.0% | |
| ! | GGGAGTACAGAACTCTGTGA+GGG | - | chr5_3:16417158-16417177 | None:intergenic | 50.0% |
| TCAGATGGGCCTCTTCTTTG+AGG | - | chr5_3:16418511-16418530 | None:intergenic | 50.0% | |
| GGTTAGAGAGAGAGAGAGGG+GGG | - | chr5_3:16413086-16413105 | None:intergenic | 55.0% | |
| GGGTTAGAGAGAGAGAGAGG+GGG | - | chr5_3:16413087-16413106 | None:intergenic | 55.0% | |
| !! | TGAGCCTCTTCGGTATTGGC+AGG | + | chr5_3:16413113-16413132 | Msa0802230:CDS | 55.0% |
| ! | GTGATGTCGGTTGCGGATAG+TGG | - | chr5_3:16414814-16414833 | None:intergenic | 55.0% |
| CCGCAACCGACATCACTGAA+TGG | + | chr5_3:16414818-16414837 | Msa0802230:intron | 55.0% | |
| GGATGTCCAGTCGTGGTGAA+GGG | + | chr5_3:16415115-16415134 | Msa0802230:intron | 55.0% | |
| !! | TCACTGAAGGTGCCCGCAAA+TGG | + | chr5_3:16416210-16416229 | Msa0802230:intron | 55.0% |
| GATCTTCGGATGAGGGATGG+TGG | + | chr5_3:16416483-16416502 | Msa0802230:intron | 55.0% | |
| TCTTCGGATGAGGGATGGTG+GGG | + | chr5_3:16416485-16416504 | Msa0802230:intron | 55.0% | |
| AGCTGTAAAGCTACCTCCCG+GGG | + | chr5_3:16416909-16416928 | Msa0802230:CDS | 55.0% | |
| TCATTCAAATCCTCCCCGGG+AGG | - | chr5_3:16416925-16416944 | None:intergenic | 55.0% | |
| CCGGGGAGGATTTGAATGAG+TGG | + | chr5_3:16416926-16416945 | Msa0802230:CDS | 55.0% | |
| ! | CGGGAGTACAGAACTCTGTG+AGG | - | chr5_3:16417159-16417178 | None:intergenic | 55.0% |
| GGTCGCAGCACTCCTCGTAT+AGG | - | chr5_3:16414214-16414233 | None:intergenic | 60.0% | |
| TTGCATCCACAGGGGGGGTA+GGG | - | chr5_3:16414456-16414475 | None:intergenic | 60.0% | |
| ATTGCATCCACAGGGGGGGT+AGG | - | chr5_3:16414457-16414476 | None:intergenic | 60.0% | |
| CGGATGTCCAGTCGTGGTGA+AGG | + | chr5_3:16415114-16415133 | Msa0802230:intron | 60.0% | |
| TGTAAAGCTACCTCCCGGGG+AGG | + | chr5_3:16416912-16416931 | Msa0802230:CDS | 60.0% | |
| CTTTGTCCCTACCCCCCCTG+TGG | + | chr5_3:16414447-16414466 | Msa0802230:intron | 65.0% | |
| !! | GGATGAGGGATGGTGGGGCA+TGG | + | chr5_3:16416490-16416509 | Msa0802230:intron | 65.0% |
| !! | AGGGATGGTGGGGCATGGTG+AGG | + | chr5_3:16416495-16416514 | Msa0802230:intron | 65.0% |
| !! | GGGATGGTGGGGCATGGTGA+GGG | + | chr5_3:16416496-16416515 | Msa0802230:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 16412990 | 16419100 | 16412990 | ID=Msa0802230;Name=Msa0802230 |
| chr5_3 | mRNA | 16412990 | 16419100 | 16412990 | ID=Msa0802230-mRNA-1;Parent=Msa0802230;Name=Msa0802230-mRNA-1;_AED=0.04;_eAED=0.04;_QI=122|1|1|1|0.66|0.71|7|363|213 |
| chr5_3 | exon | 16412990 | 16413134 | 16412990 | ID=Msa0802230-mRNA-1:exon:6868;Parent=Msa0802230-mRNA-1 |
| chr5_3 | exon | 16415709 | 16415757 | 16415709 | ID=Msa0802230-mRNA-1:exon:6869;Parent=Msa0802230-mRNA-1 |
| chr5_3 | exon | 16416853 | 16416961 | 16416853 | ID=Msa0802230-mRNA-1:exon:6870;Parent=Msa0802230-mRNA-1 |
| chr5_3 | exon | 16417116 | 16417209 | 16417116 | ID=Msa0802230-mRNA-1:exon:6871;Parent=Msa0802230-mRNA-1 |
| chr5_3 | exon | 16418177 | 16418310 | 16418177 | ID=Msa0802230-mRNA-1:exon:6872;Parent=Msa0802230-mRNA-1 |
| chr5_3 | exon | 16418402 | 16418565 | 16418402 | ID=Msa0802230-mRNA-1:exon:6873;Parent=Msa0802230-mRNA-1 |
| chr5_3 | exon | 16418669 | 16419100 | 16418669 | ID=Msa0802230-mRNA-1:exon:6874;Parent=Msa0802230-mRNA-1 |
| chr5_3 | five_prime_UTR | 16412990 | 16413111 | 16412990 | ID=Msa0802230-mRNA-1:five_prime_utr;Parent=Msa0802230-mRNA-1 |
| chr5_3 | CDS | 16413112 | 16413134 | 16413112 | ID=Msa0802230-mRNA-1:cds;Parent=Msa0802230-mRNA-1 |
| chr5_3 | CDS | 16415709 | 16415757 | 16415709 | ID=Msa0802230-mRNA-1:cds;Parent=Msa0802230-mRNA-1 |
| chr5_3 | CDS | 16416853 | 16416961 | 16416853 | ID=Msa0802230-mRNA-1:cds;Parent=Msa0802230-mRNA-1 |
| chr5_3 | CDS | 16417116 | 16417209 | 16417116 | ID=Msa0802230-mRNA-1:cds;Parent=Msa0802230-mRNA-1 |
| chr5_3 | CDS | 16418177 | 16418310 | 16418177 | ID=Msa0802230-mRNA-1:cds;Parent=Msa0802230-mRNA-1 |
| chr5_3 | CDS | 16418402 | 16418565 | 16418402 | ID=Msa0802230-mRNA-1:cds;Parent=Msa0802230-mRNA-1 |
| chr5_3 | CDS | 16418669 | 16418737 | 16418669 | ID=Msa0802230-mRNA-1:cds;Parent=Msa0802230-mRNA-1 |
| chr5_3 | three_prime_UTR | 16418738 | 16419100 | 16418738 | ID=Msa0802230-mRNA-1:three_prime_utr;Parent=Msa0802230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
