AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1254560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254560 MtrunA17_Chr8g0371501 100.000 197 0 0 1 197 1 197 3.27e-147 406
Msa1254560 MtrunA17_Chr5g0405791 97.462 197 5 0 1 197 1 197 1.10e-143 397
Msa1254560 MtrunA17_Chr4g0037021 90.355 197 19 0 1 197 1 197 6.72e-136 378
Msa1254560 MtrunA17_Chr3g0117931 78.866 194 40 1 2 194 4 197 9.97e-119 335
Msa1254560 MtrunA17_Chr2g0325101 84.831 178 27 0 1 178 1 178 1.78e-117 331
Msa1254560 MtrunA17_Chr6g0486041 75.377 199 46 1 1 196 1 199 3.57e-113 321
Msa1254560 MtrunA17_Chr4g0046211 88.811 143 16 0 1 143 1 143 5.39e-96 275
Msa1254560 MtrunA17_Chr7g0265001 30.851 188 116 4 8 192 18 194 3.94e-26 99.8
Msa1254560 MtrunA17_Chr1g0182321 31.383 188 116 6 6 191 15 191 1.67e-25 98.2
Msa1254560 MtrunA17_Chr1g0182301 31.383 188 116 6 6 191 15 191 3.00e-25 97.8
Msa1254560 MtrunA17_Chr1g0212521 32.386 176 106 6 6 179 15 179 5.73e-25 97.1
Msa1254560 MtrunA17_Chr7g0263071 31.383 188 116 6 6 191 15 191 5.98e-25 97.1
Msa1254560 MtrunA17_Chr4g0030911 31.183 186 115 6 6 189 15 189 1.19e-24 95.9
Msa1254560 MtrunA17_Chr8g0384311 31.053 190 116 5 6 192 13 190 3.80e-24 94.7
Msa1254560 MtrunA17_Chr3g0130271 30.159 189 118 5 7 192 13 190 6.25e-24 94.0
Msa1254560 MtrunA17_Chr1g0199331 32.584 178 103 7 7 180 32 196 5.32e-23 91.3
Msa1254560 MtrunA17_Chr8g0335471 34.066 182 101 8 6 180 8 177 7.27e-23 91.3
Msa1254560 MtrunA17_Chr8g0390561 32.222 180 107 6 8 184 11 178 7.31e-23 90.9
Msa1254560 MtrunA17_Chr4g0055651 31.953 169 101 5 6 172 8 164 1.11e-22 90.5
Msa1254560 MtrunA17_Chr1g0159481 31.285 179 108 5 6 181 17 183 1.55e-22 90.5
Msa1254560 MtrunA17_Chr1g0180291 30.508 177 108 5 8 181 16 180 2.15e-22 90.1
Msa1254560 MtrunA17_Chr8g0349711 30.233 172 106 5 1 170 1 160 2.33e-22 90.1
Msa1254560 MtrunA17_Chr7g0250531 31.551 187 109 7 6 185 8 182 2.43e-22 89.7
Msa1254560 MtrunA17_Chr4g0055081 33.333 165 96 5 8 170 11 163 3.56e-22 89.4
Msa1254560 MtrunA17_Chr2g0276931 31.429 175 103 6 1 170 1 163 4.03e-22 89.0
Msa1254560 MtrunA17_Chr3g0109721 33.520 179 104 5 8 183 12 178 1.84e-21 87.4
Msa1254560 MtrunA17_Chr7g0275991 33.333 165 96 5 8 170 22 174 3.16e-21 87.4
Msa1254560 MtrunA17_Chr6g0458081 28.177 181 116 5 1 179 1 169 6.12e-21 86.3
Msa1254560 MtrunA17_Chr2g0290891 28.488 172 109 5 1 170 1 160 7.10e-21 85.9
Msa1254560 MtrunA17_Chr2g0327911 30.319 188 116 6 6 189 15 191 7.55e-21 85.9
Msa1254560 MtrunA17_Chr5g0400131 32.727 165 97 5 8 170 11 163 1.35e-20 85.1
Msa1254560 MtrunA17_Chr2g0319951 29.282 181 114 5 6 184 13 181 3.26e-20 84.3
Msa1254560 MtrunA17_Chr8g0346421 31.522 184 97 7 8 169 28 204 3.66e-20 84.7
Msa1254560 MtrunA17_Chr5g0433561 32.121 165 98 4 8 170 12 164 4.45e-20 83.6
Msa1254560 MtrunA17_Chr3g0112681 30.729 192 117 6 6 195 12 189 6.26e-20 83.6
Msa1254560 MtrunA17_Chr2g0276941 31.579 171 103 5 6 174 15 173 9.55e-20 83.2
Msa1254560 MtrunA17_Chr1g0174281 33.333 165 96 5 8 170 17 169 1.35e-19 82.8
Msa1254560 MtrunA17_Chr8g0349681 29.651 172 107 5 1 170 8 167 1.43e-19 85.9
Msa1254560 MtrunA17_Chr8g0349681 29.070 172 108 5 1 170 379 538 7.57e-19 83.6
Msa1254560 MtrunA17_Chr8g0349681 27.907 172 110 5 1 170 170 329 1.73e-18 82.8
Msa1254560 MtrunA17_Chr3g0123971 30.909 165 100 4 8 170 11 163 3.69e-19 81.3
Msa1254560 MtrunA17_Chr4g0040781 33.333 150 90 4 6 146 13 161 4.47e-19 81.3
Msa1254560 MtrunA17_Chr7g0231131 32.727 165 97 6 8 170 17 169 4.60e-19 81.6
Msa1254560 MtrunA17_Chr8g0382221 31.515 165 99 5 8 170 11 163 5.85e-19 80.9
Msa1254560 MtrunA17_Chr1g0201121 31.250 192 115 7 1 184 1 183 5.91e-19 80.9
Msa1254560 MtrunA17_Chr7g0234201 28.947 190 121 5 6 193 13 190 8.31e-19 80.5
Msa1254560 MtrunA17_Chr1g0197331 28.495 186 118 5 7 188 16 190 1.01e-18 80.5
Msa1254560 MtrunA17_Chr4g0046261 31.737 167 100 5 6 170 13 167 1.20e-18 80.1
Msa1254560 MtrunA17_Chr8g0381841 32.121 165 98 5 8 170 19 171 1.31e-18 80.5
Msa1254560 MtrunA17_Chr2g0315551 35.833 120 74 3 6 123 13 131 2.20e-18 79.7
Msa1254560 MtrunA17_Chr2g0283131 35.833 120 74 3 6 123 13 131 3.45e-18 79.0
Msa1254560 MtrunA17_Chr4g0032201 32.609 138 83 4 6 134 12 148 4.31e-18 79.0
Msa1254560 MtrunA17_Chr7g0214241 28.947 190 121 5 6 193 15 192 6.45e-18 78.6
Msa1254560 MtrunA17_Chr3g0123821 31.325 166 98 6 8 170 18 170 9.12e-18 78.2
Msa1254560 MtrunA17_Chr2g0331691 29.570 186 116 6 6 185 10 186 2.22e-17 76.6
Msa1254560 MtrunA17_Chr8g0392931 29.101 189 120 5 6 192 14 190 2.38e-17 77.0
Msa1254560 MtrunA17_Chr1g0189361 30.114 176 105 6 6 177 14 175 3.59e-17 76.6
Msa1254560 MtrunA17_Chr4g0034871 28.495 186 118 5 6 185 8 184 4.40e-17 75.9
Msa1254560 MtrunA17_Chr6g0466301 31.579 171 102 6 6 170 8 169 8.74e-17 75.1
Msa1254560 MtrunA17_Chr6g0465491 31.579 171 102 6 6 170 8 169 8.74e-17 75.1
Msa1254560 MtrunA17_Chr8g0351861 31.138 167 101 6 6 170 16 170 2.07e-16 74.7
Msa1254560 MtrunA17_Chr4g0004661 29.016 193 120 7 1 185 57 240 4.64e-16 74.3
Msa1254560 MtrunA17_Chr8g0383261 26.238 202 122 4 6 188 12 205 5.43e-16 73.2
Msa1254560 MtrunA17_Chr2g0325091 36.667 120 73 3 6 123 11 129 6.39e-16 72.8
Msa1254560 MtrunA17_Chr6g0482721 29.697 165 103 5 6 161 12 172 2.40e-15 71.6
Msa1254560 MtrunA17_Chr7g0259771 28.342 187 100 3 7 180 9 174 3.64e-15 73.2
Msa1254560 MtrunA17_Chr3g0138121 28.485 165 103 4 7 170 14 164 2.69e-14 68.6
Msa1254560 MtrunA17_Chr3g0138101 28.485 165 103 4 7 170 14 164 2.92e-14 68.6
Msa1254560 MtrunA17_Chr3g0138111 28.485 165 103 4 7 170 14 164 3.13e-14 68.6
Msa1254560 MtrunA17_Chr1g0185591 28.571 175 115 4 7 180 13 178 2.01e-13 68.2
Msa1254560 MtrunA17_Chr1g0191811 28.571 175 115 4 7 180 17 182 2.89e-13 67.8
Msa1254560 MtrunA17_Chr4g0046221 72.973 37 10 0 142 178 10 46 3.61e-13 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254560 AT2G17800.2 95.939 197 8 0 1 197 1 197 1.34e-129 362
Msa1254560 AT2G17800.1 95.939 197 8 0 1 197 1 197 1.34e-129 362
Msa1254560 AT3G51300.1 95.939 197 8 0 1 197 1 197 2.13e-129 362
Msa1254560 AT4G35950.1 95.431 197 9 0 1 197 1 197 3.37e-129 361
Msa1254560 AT4G35020.1 88.889 198 21 1 1 197 1 198 1.59e-127 357
Msa1254560 AT4G35020.2 88.889 198 21 1 1 197 1 198 1.59e-127 357
Msa1254560 AT4G35020.3 88.889 198 21 1 1 197 1 198 1.59e-127 357
Msa1254560 AT1G75840.1 92.697 178 13 0 1 178 1 178 1.26e-124 350
Msa1254560 AT1G20090.1 91.477 176 15 0 3 178 2 177 4.58e-122 343
Msa1254560 AT5G45970.1 87.151 179 23 0 1 179 1 179 2.90e-119 336
Msa1254560 AT5G62880.1 81.564 179 33 0 2 180 4 182 5.62e-113 321
Msa1254560 AT3G48040.1 81.564 179 33 0 2 180 4 182 7.78e-112 318
Msa1254560 AT4G28950.1 75.000 200 44 2 1 196 1 198 5.14e-111 316
Msa1254560 AT2G44690.1 75.521 192 47 0 6 197 18 209 1.23e-107 307
Msa1254560 AT5G62880.2 80.233 172 30 1 2 173 4 171 4.43e-105 300
Msa1254560 AT3G48040.2 81.595 163 30 0 2 164 4 166 3.84e-102 292
Msa1254560 AT3G51290.2 95.732 164 7 0 34 197 635 798 3.91e-98 301
Msa1254560 AT4G35020.4 93.333 120 8 0 1 120 1 120 9.74e-83 242
Msa1254560 AT4G35020.5 93.333 120 8 0 1 120 1 120 9.74e-83 242
Msa1254560 AT3G54840.2 33.929 168 96 6 7 171 34 189 3.27e-24 94.7
Msa1254560 AT3G46060.2 32.934 167 99 6 6 170 15 170 3.53e-24 95.1
Msa1254560 AT3G46060.3 32.934 167 99 6 6 170 15 170 3.53e-24 95.1
Msa1254560 AT3G46060.1 32.934 167 99 6 6 170 15 170 3.53e-24 95.1
Msa1254560 AT3G54840.1 32.738 168 98 5 7 171 34 189 3.59e-24 94.7
Msa1254560 AT3G54840.3 32.530 166 97 5 9 171 2 155 1.23e-23 92.4
Msa1254560 AT1G02130.1 33.136 169 99 6 6 172 8 164 1.52e-23 93.2
Msa1254560 AT5G45130.1 33.939 165 95 4 8 170 12 164 2.04e-23 92.8
Msa1254560 AT3G53610.2 31.737 167 101 6 6 170 15 170 4.97e-23 92.0
Msa1254560 AT3G53610.3 31.737 167 101 6 6 170 15 170 4.97e-23 92.0
Msa1254560 AT3G53610.1 31.737 167 101 6 6 170 15 170 4.97e-23 92.0
Msa1254560 AT4G19640.1 33.939 165 95 4 8 170 12 164 5.19e-23 91.7
Msa1254560 AT5G59840.1 31.737 167 101 5 6 170 15 170 5.76e-23 92.0
Msa1254560 AT1G43890.3 29.474 190 119 5 6 192 13 190 9.37e-23 91.3
Msa1254560 AT1G43890.1 29.474 190 119 5 6 192 13 190 9.37e-23 91.3
Msa1254560 AT1G43890.2 29.474 190 119 5 6 192 13 190 9.37e-23 91.3
Msa1254560 AT5G45130.2 33.742 163 94 4 10 170 22 172 9.96e-23 91.3
Msa1254560 AT5G03530.2 29.255 188 118 5 8 192 15 190 1.11e-22 91.3
Msa1254560 AT5G03530.1 29.255 188 118 5 8 192 15 190 1.11e-22 91.3
Msa1254560 AT1G16920.1 32.418 182 109 6 6 185 13 182 7.81e-22 89.0
Msa1254560 AT2G44610.1 33.333 165 96 5 8 170 11 163 1.71e-21 87.8
Msa1254560 AT4G35860.1 28.177 181 116 5 1 179 1 169 2.42e-21 87.8
Msa1254560 AT4G17530.1 31.551 187 109 7 6 185 8 182 2.66e-21 87.4
Msa1254560 AT3G11730.1 30.539 167 102 5 6 170 8 162 4.32e-21 87.0
Msa1254560 AT4G39890.1 34.731 167 92 6 8 170 11 164 4.68e-21 87.0
Msa1254560 AT5G47200.1 31.868 182 105 7 6 180 8 177 5.99e-21 86.3
Msa1254560 AT1G09630.1 34.667 150 88 4 6 146 12 160 1.21e-20 85.9
Msa1254560 AT4G19640.2 37.705 122 73 3 8 127 12 132 1.80e-20 84.0
Msa1254560 AT1G18200.1 29.834 181 113 5 6 184 13 181 2.30e-20 85.5
Msa1254560 AT3G09900.1 31.383 188 116 6 6 191 15 191 2.96e-20 85.1
Msa1254560 AT4G18430.1 34.132 167 96 5 6 170 13 167 3.03e-20 84.7
Msa1254560 AT2G22290.1 33.333 165 96 5 8 170 11 163 3.09e-20 84.7
Msa1254560 AT4G17170.1 27.907 172 110 5 1 170 1 160 3.72e-20 84.3
Msa1254560 AT4G19640.3 37.705 122 73 3 8 127 12 132 5.30e-20 83.6
Msa1254560 AT1G73640.1 31.492 181 110 5 6 184 13 181 5.37e-20 84.7
Msa1254560 AT3G07410.1 31.579 190 116 5 6 193 12 189 5.92e-20 84.0
Msa1254560 AT2G31680.1 30.159 189 118 4 6 192 12 188 1.21e-19 83.2
Msa1254560 AT1G06400.1 31.892 185 109 6 6 188 13 182 1.22e-19 83.2
Msa1254560 AT3G12160.1 33.333 165 96 5 8 170 17 169 1.29e-19 83.2
Msa1254560 AT2G43130.1 29.630 189 119 5 6 192 12 188 1.30e-19 83.2
Msa1254560 AT5G03520.1 31.383 188 116 6 6 191 15 191 1.59e-19 82.8
Msa1254560 AT4G17160.1 26.744 172 112 5 1 170 1 160 1.99e-19 82.4
Msa1254560 AT4G18800.1 36.667 120 73 3 6 123 13 131 2.98e-19 82.0
Msa1254560 AT3G15060.1 30.726 179 110 5 8 184 15 181 6.99e-19 81.3
Msa1254560 AT5G10260.1 32.121 165 98 5 8 170 11 163 1.13e-18 80.5
Msa1254560 AT1G05810.1 30.159 189 118 5 6 192 12 188 1.28e-18 80.5
Msa1254560 AT3G18820.1 30.108 186 115 6 6 185 8 184 1.31e-18 80.5
Msa1254560 AT1G05810.2 30.159 189 118 5 6 192 58 234 1.59e-18 81.3
Msa1254560 AT5G45750.1 35.833 120 74 3 6 123 13 131 2.01e-18 80.1
Msa1254560 AT5G60860.1 29.834 181 113 5 6 184 13 181 2.20e-18 80.1
Msa1254560 AT5G64990.1 33.333 165 96 5 8 170 9 161 3.35e-18 79.3
Msa1254560 AT1G01200.1 34.337 166 94 6 8 170 30 183 5.57e-18 79.3
Msa1254560 AT5G47520.1 28.652 178 113 5 2 177 10 175 8.33e-18 78.6
Msa1254560 AT1G28550.1 36.667 120 73 3 6 123 13 131 1.26e-17 77.8
Msa1254560 AT1G07410.1 35.294 119 74 3 6 122 12 129 2.17e-17 77.4
Msa1254560 AT5G59150.1 29.825 171 106 6 6 174 12 170 2.26e-17 77.4
Msa1254560 AT2G21880.1 27.717 184 120 4 6 184 9 184 2.71e-17 77.0
Msa1254560 AT4G39990.1 28.495 186 117 6 8 190 19 191 4.16e-17 76.6
Msa1254560 AT2G33870.1 36.975 119 72 3 6 122 13 130 4.38e-17 76.6
Msa1254560 AT5G47960.1 34.188 117 74 3 8 122 17 132 4.63e-17 76.6
Msa1254560 AT5G65270.1 28.889 180 112 6 8 184 19 185 7.99e-17 75.9
Msa1254560 AT1G22740.1 28.646 192 120 6 1 184 1 183 9.68e-17 75.5
Msa1254560 AT3G46830.1 33.613 119 76 3 6 122 12 129 2.64e-16 74.3
Msa1254560 AT3G46830.2 33.613 119 76 3 6 122 12 129 2.64e-16 74.3
Msa1254560 AT1G52280.1 30.726 179 107 7 1 171 1 170 3.24e-16 73.9
Msa1254560 AT5G27540.1 25.862 174 121 2 7 180 18 183 3.62e-16 76.3
Msa1254560 AT5G27540.2 25.862 174 121 2 7 180 18 183 3.62e-16 76.3
Msa1254560 AT3G16100.1 29.016 193 120 7 1 185 1 184 6.55e-16 73.2
Msa1254560 AT4G09720.1 30.994 171 103 6 6 170 8 169 1.35e-15 72.4
Msa1254560 AT5G64990.2 31.977 172 96 6 8 170 9 168 1.47e-15 72.4
Msa1254560 AT3G09910.3 28.249 177 112 5 8 181 15 179 1.74e-15 72.0
Msa1254560 AT3G09910.1 28.249 177 112 5 8 181 15 179 1.74e-15 72.0
Msa1254560 AT3G09910.2 28.249 177 112 5 8 181 15 179 1.74e-15 72.0
Msa1254560 AT1G49300.2 30.409 171 104 6 6 170 8 169 3.09e-15 71.2
Msa1254560 AT1G49300.1 30.409 171 104 6 6 170 8 169 3.09e-15 71.2
Msa1254560 AT5G55080.1 30.769 117 79 2 7 122 14 129 3.39e-15 71.6
Msa1254560 AT3G09910.5 28.889 180 110 6 8 181 15 182 1.13e-14 69.7
Msa1254560 AT3G09910.4 28.889 180 110 6 8 181 15 182 1.13e-14 69.7
Msa1254560 AT3G63150.1 30.114 176 111 6 7 180 15 180 2.50e-14 71.2
Msa1254560 AT5G20020.1 28.485 165 103 4 7 170 14 164 2.76e-14 68.9
Msa1254560 AT4G09720.4 28.977 176 105 5 6 170 8 174 3.36e-14 68.6
Msa1254560 AT5G55190.1 28.485 165 103 4 7 170 14 164 3.45e-14 68.9
Msa1254560 AT5G20010.1 28.485 165 103 4 7 170 14 164 3.82e-14 68.6
Msa1254560 AT4G09720.3 28.022 182 105 5 6 170 8 180 2.72e-13 66.2
Msa1254560 AT5G03520.2 30.137 146 90 5 47 191 47 181 3.24e-13 65.9
Msa1254560 AT5G39620.1 27.322 183 118 5 7 183 6 179 6.90e-13 65.1
Msa1254560 AT4G35860.2 26.119 134 86 4 47 179 2 123 2.13e-12 62.8
Msa1254560 AT2G21880.4 25.749 167 111 4 23 184 1 159 5.53e-11 59.3
Msa1254560 AT2G21880.3 25.749 167 111 4 23 184 1 159 5.53e-11 59.3

Find 83 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTGGTGCTTTGCTTTCT+TGG 0.177779 8_2:-52656674 Msa1254560:three_prime_UTR
TTATGAAAATGTTTCTAAAA+AGG 0.255465 8_2:-52658875 Msa1254560:intron
ATTGTCAAATTTGTATTTCA+TGG 0.261508 8_2:-52656634 Msa1254560:three_prime_UTR
CTTTGTGCCAACCAGAATAA+TGG 0.304891 8_2:+52658640 None:intergenic
AACAAGGTAGTCATCCTAAC+TGG 0.314771 8_2:+52656561 None:intergenic
GCGTAATTGAAGCGAATAAT+TGG 0.315901 8_2:-52660159 Msa1254560:five_prime_UTR
GAAAGAAGATGAGCGCTTCT+AGG 0.324588 8_2:-52660083 Msa1254560:exon
ACCTGGTGTTCCCATTATTC+TGG 0.347919 8_2:-52658651 Msa1254560:CDS
ATAAACTTAAGTTAAGAAAA+AGG 0.348662 8_2:+52656605 None:intergenic
GAATGGAAGCACTGTGAATC+TGG 0.355358 8_2:-52659085 Msa1254560:CDS
AGTTGTTCTTAGTTGTCATT+TGG 0.361351 8_2:-52656466 Msa1254560:three_prime_UTR
TCCTATTATGTTGAAGAAGT+TGG 0.373374 8_2:-52656753 Msa1254560:three_prime_UTR
TCCAACTTCTTCAACATAAT+AGG 0.377214 8_2:+52656752 None:intergenic
TTCACCTGAGCGGTGGTAAT+AGG 0.380693 8_2:+52657222 None:intergenic
ACACAATCATAATGATTTGT+TGG 0.381230 8_2:-52660383 Msa1254560:five_prime_UTR
TGGTTGAAGGACAACTCTTA+TGG 0.386728 8_2:+52656906 None:intergenic
TCATCAAGTGTGTTACTGTT+GGG 0.391822 8_2:-52660059 Msa1254560:CDS
GCTTCAACGGCAAAATTTCC+CGG 0.395752 8_2:-52660336 Msa1254560:five_prime_UTR
GGAGGTGTGTGTGAGTGATT+TGG 0.402822 8_2:-52660138 Msa1254560:five_prime_UTR
TCATTTGGTTGTTGAATAGT+TGG 0.403843 8_2:-52656451 Msa1254560:three_prime_UTR
AAAGAAGAGTAAAGCTCAAA+AGG 0.404647 8_2:-52656869 Msa1254560:CDS
CACAGTGGGGAAGGTATTGC+TGG 0.423554 8_2:+52659996 None:intergenic
TTTGTGCCAACCAGAATAAT+GGG 0.430326 8_2:+52658641 None:intergenic
TTGAAATGAGACAGACCTTC+GGG 0.436373 8_2:-52657283 Msa1254560:intron
CACTGTGAATCTGGGTTTGT+GGG 0.441336 8_2:-52659076 Msa1254560:CDS
GGATGACAAGCAGTTCTTTG+TGG 0.445007 8_2:-52657262 Msa1254560:CDS
CAGTTCTTTGTGGACCATCC+TGG 0.455578 8_2:-52657252 Msa1254560:CDS
ACATAATAGGAATGAAGAAT+AGG 0.461062 8_2:+52656765 None:intergenic
TGAAAGAGAGACAAGGAACC+CGG 0.461507 8_2:+52660317 None:intergenic
CTAAATCTCGTTGAAGCATA+AGG 0.461587 8_2:-52656697 Msa1254560:three_prime_UTR
AGTGCAAATGTGGTTGTGAA+TGG 0.466304 8_2:-52659102 Msa1254560:CDS
TGAGTGATTTGGAGTGATAA+AGG 0.471447 8_2:-52660127 Msa1254560:five_prime_UTR
TTCATCAAGTGTGTTACTGT+TGG 0.472314 8_2:-52660060 Msa1254560:CDS
ATTCTGGTTGGCACAAAGCT+TGG 0.474465 8_2:-52658635 Msa1254560:intron
AAGAGGAGAGAAATACATGT+TGG 0.474506 8_2:+52656791 None:intergenic
AGTGATAAAGGTGAAAGATC+TGG 0.475268 8_2:-52660115 Msa1254560:five_prime_UTR
AACTAACAAACTAACCCATT+AGG 0.475958 8_2:+52660266 None:intergenic
TAGACTGGAATATCCCAGTT+AGG 0.477541 8_2:-52656575 Msa1254560:three_prime_UTR
GGTGCATAATGCTTCAACTC+TGG 0.481713 8_2:+52658671 None:intergenic
AAGTTTATGTATTAATAGAC+TGG 0.481872 8_2:-52656590 Msa1254560:three_prime_UTR
GTTCGATATTGTGATTTGCT+AGG 0.482241 8_2:-52656843 Msa1254560:exon
GAGAAATACATGTTGGAGAA+TGG 0.486683 8_2:+52656798 None:intergenic
AGCAAATCACAATATCGAAC+AGG 0.488579 8_2:+52656846 None:intergenic
TAAAGGTGAAAGATCTGGAT+AGG 0.489750 8_2:-52660110 Msa1254560:five_prime_UTR
GAACTGCATTCAATATAAGC+AGG 0.495522 8_2:+52657061 None:intergenic
GGTGTTCCCATTATTCTGGT+TGG 0.501900 8_2:-52658647 Msa1254560:CDS
TCTTGAAGGGAGAAGAGCTC+AGG 0.509266 8_2:-52657099 Msa1254560:intron
GAATGAAGAATAGGAAGAAG+AGG 0.519023 8_2:+52656774 None:intergenic
CGCTTTCTCACTCATAAGCA+AGG 0.527969 8_2:-52658902 Msa1254560:CDS
CTTGAAATGAGACAGACCTT+CGG 0.529221 8_2:-52657284 Msa1254560:intron
CTTCAACGGCAAAATTTCCC+GGG 0.537334 8_2:-52660335 Msa1254560:five_prime_UTR
CTGAAATTGTCGAAGACAGT+TGG 0.537778 8_2:+52659123 None:intergenic
TTAAAGAACGAACGCTTCAA+CGG 0.540749 8_2:-52660349 Msa1254560:five_prime_UTR
CTGGGTTTGTGGGACACTGC+AGG 0.543142 8_2:-52659066 Msa1254560:intron
TTCTTGTGAAACAGGACAAG+AGG 0.543155 8_2:-52658977 Msa1254560:intron
GCACTGTGAATCTGGGTTTG+TGG 0.545979 8_2:-52659077 Msa1254560:CDS
TGTTCCTATTACCACCGCTC+AGG 0.553664 8_2:-52657226 Msa1254560:intron
CGACAATTTCAGTGCAAATG+TGG 0.560089 8_2:-52659112 Msa1254560:CDS
ACTGTTGGGGATGGAGCTGT+TGG 0.567138 8_2:-52660045 Msa1254560:CDS
AAAGGTGAAAGATCTGGATA+GGG 0.571381 8_2:-52660109 Msa1254560:five_prime_UTR
GAAAGAGAGACAAGGAACCC+GGG 0.585664 8_2:+52660318 None:intergenic
CACAATATTCACCTGAGCGG+TGG 0.588643 8_2:+52657215 None:intergenic
CATCAAGTGTGTTACTGTTG+GGG 0.592671 8_2:-52660058 Msa1254560:CDS
GATATTGTGATTTGCTAGGT+CGG 0.597878 8_2:-52656839 Msa1254560:exon
TTAAGACCTTTGAGTTATCG+TGG 0.598742 8_2:-52658943 Msa1254560:CDS
ATGCAGTTCAAAATCACAGC+AGG 0.601412 8_2:-52657047 Msa1254560:intron
AATGGAAGCACTGTGAATCT+GGG 0.602680 8_2:-52659084 Msa1254560:CDS
AAGTGTGTTACTGTTGGGGA+TGG 0.603907 8_2:-52660054 Msa1254560:CDS
GAAGAAGTTGGAGTCTATGT+GGG 0.604456 8_2:-52656741 Msa1254560:three_prime_UTR
ACAAGGTAGTCATCCTAACT+GGG 0.609256 8_2:+52656562 None:intergenic
TATATATCTTCAAGCAAACA+AGG 0.612690 8_2:+52656545 None:intergenic
GAGTTGAAGCATTATGCACC+TGG 0.616427 8_2:-52658668 Msa1254560:CDS
TGAAGAAGTTGGAGTCTATG+TGG 0.622303 8_2:-52656742 Msa1254560:three_prime_UTR
ACCAGAATAATGGGAACACC+AGG 0.622688 8_2:+52658650 None:intergenic
TCGTTGAAGCATAAGGTGGT+TGG 0.631100 8_2:-52656690 Msa1254560:three_prime_UTR
TAATTGAAGCGAATAATTGG+AGG 0.632769 8_2:-52660156 Msa1254560:five_prime_UTR
GTGGTAATAGGAACAGCACC+AGG 0.638537 8_2:+52657234 None:intergenic
TAATAGGAACAGCACCAGGA+TGG 0.658624 8_2:+52657238 None:intergenic
AGAACTGCTTGTCATCCCGA+AGG 0.663377 8_2:+52657268 None:intergenic
TCAGCACCACGATAACTCAA+AGG 0.665908 8_2:+52658937 None:intergenic
AATCTCGTTGAAGCATAAGG+TGG 0.676333 8_2:-52656694 Msa1254560:three_prime_UTR
TCGCGCATGAAAGAGAGACA+AGG 0.716429 8_2:+52660310 None:intergenic
AAACACAATATTCACCTGAG+CGG 0.759772 8_2:+52657212 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACAAAAACAAATAAAAA+GGG + chr8_2:52657428-52657447 None:intergenic 10.0%
!! TTAAACAAAAACAAATAAAA+AGG + chr8_2:52657429-52657448 None:intergenic 10.0%
!! AATTAAAAAAAAAATAGAAG+AGG + chr8_2:52658387-52658406 None:intergenic 10.0%
!! TAAACAAAAACAAATAAAAA+GGG + chr8_2:52657428-52657447 None:intergenic 10.0%
!! TTAAACAAAAACAAATAAAA+AGG + chr8_2:52657429-52657448 None:intergenic 10.0%
!! AATTAAAAAAAAAATAGAAG+AGG + chr8_2:52658387-52658406 None:intergenic 10.0%
!! AATCAAAAAATGATGAAATT+GGG + chr8_2:52656591-52656610 None:intergenic 15.0%
!! AAATCAAAAAATGATGAAAT+TGG + chr8_2:52656592-52656611 None:intergenic 15.0%
!! AAGAAGATTAAAAAGAAAAA+GGG + chr8_2:52656859-52656878 None:intergenic 15.0%
!! TAAGAAGATTAAAAAGAAAA+AGG + chr8_2:52656860-52656879 None:intergenic 15.0%
!!! AGTAATTTGGATTTATTTTT+TGG - chr8_2:52656918-52656937 Msa1254560:CDS 15.0%
!!! TTATTTTTATGATCGTTTTT+GGG - chr8_2:52656946-52656965 Msa1254560:intron 15.0%
!! AAACAAAAACAAATAAAAAG+GGG + chr8_2:52657427-52657446 None:intergenic 15.0%
!!! TTATGAAAATGTTTCTAAAA+AGG - chr8_2:52657940-52657959 Msa1254560:intron 15.0%
!!! AAGTTGTTAATTTAGAATTT+TGG - chr8_2:52659264-52659283 Msa1254560:intron 15.0%
!! AGTATTTGACATTAATTAAA+AGG - chr8_2:52659323-52659342 Msa1254560:intron 15.0%
!! GTATTTGACATTAATTAAAA+GGG - chr8_2:52659324-52659343 Msa1254560:intron 15.0%
!! ATAAACTTAAGTTAAGAAAA+AGG + chr8_2:52660213-52660232 None:intergenic 15.0%
!! AATCAAAAAATGATGAAATT+GGG + chr8_2:52656591-52656610 None:intergenic 15.0%
!! AAATCAAAAAATGATGAAAT+TGG + chr8_2:52656592-52656611 None:intergenic 15.0%
!! AAGAAGATTAAAAAGAAAAA+GGG + chr8_2:52656859-52656878 None:intergenic 15.0%
!! TAAGAAGATTAAAAAGAAAA+AGG + chr8_2:52656860-52656879 None:intergenic 15.0%
!!! AGTAATTTGGATTTATTTTT+TGG - chr8_2:52656918-52656937 Msa1254560:CDS 15.0%
!!! TTATTTTTATGATCGTTTTT+GGG - chr8_2:52656946-52656965 Msa1254560:intron 15.0%
!! AAACAAAAACAAATAAAAAG+GGG + chr8_2:52657427-52657446 None:intergenic 15.0%
!!! TTATGAAAATGTTTCTAAAA+AGG - chr8_2:52657940-52657959 Msa1254560:intron 15.0%
!!! AAGTTGTTAATTTAGAATTT+TGG - chr8_2:52659264-52659283 Msa1254560:intron 15.0%
!! AGTATTTGACATTAATTAAA+AGG - chr8_2:52659323-52659342 Msa1254560:intron 15.0%
!! GTATTTGACATTAATTAAAA+GGG - chr8_2:52659324-52659343 Msa1254560:intron 15.0%
!! ATAAACTTAAGTTAAGAAAA+AGG + chr8_2:52660213-52660232 None:intergenic 15.0%
!! TTATGTGTTATCGAATTAAT+TGG - chr8_2:52656883-52656902 Msa1254560:CDS 20.0%
!! GAATTGAAATTTCAGTAATT+TGG - chr8_2:52656905-52656924 Msa1254560:CDS 20.0%
!!! GTTATTTTTATGATCGTTTT+TGG - chr8_2:52656945-52656964 Msa1254560:intron 20.0%
!! AAACATGAGAAAATTGAATT+TGG - chr8_2:52657137-52657156 Msa1254560:intron 20.0%
!! TGAAAATTATCTCAATTCAA+AGG - chr8_2:52657189-52657208 Msa1254560:intron 20.0%
!! CAAATGAAATAATTAGATTC+TGG - chr8_2:52657528-52657547 Msa1254560:intron 20.0%
!!! TTTAGAAACATTTTCATAAC+TGG + chr8_2:52657939-52657958 None:intergenic 20.0%
!!! AAAGTGCATTTTAAAAACAT+GGG + chr8_2:52658006-52658025 None:intergenic 20.0%
!!! AAAAGTGCATTTTAAAAACA+TGG + chr8_2:52658007-52658026 None:intergenic 20.0%
!!! CAAGATAGTATTTCTATATT+TGG + chr8_2:52658307-52658326 None:intergenic 20.0%
!! CAAATATAGAAATACTATCT+TGG - chr8_2:52658305-52658324 Msa1254560:intron 20.0%
!!! ATTAGTTAACAAGTGTTTTA+AGG - chr8_2:52658404-52658423 Msa1254560:intron 20.0%
!!! TTAGTTAACAAGTGTTTTAA+GGG - chr8_2:52658405-52658424 Msa1254560:intron 20.0%
!! TGTGTATAACATCATAAATT+AGG + chr8_2:52658446-52658465 None:intergenic 20.0%
!! TAAATACTTGTGAGATTATT+TGG - chr8_2:52658717-52658736 Msa1254560:intron 20.0%
!! AAATACTTGTGAGATTATTT+GGG - chr8_2:52658718-52658737 Msa1254560:intron 20.0%
!! AAAACTGCTTATAACTTATA+GGG - chr8_2:52658811-52658830 Msa1254560:intron 20.0%
!!! ATAACTGTTTTGAAAAACAT+TGG + chr8_2:52658914-52658933 None:intergenic 20.0%
!!! AATGTTTTTCAAAACAGTTA+TGG - chr8_2:52658913-52658932 Msa1254560:CDS 20.0%
!!! CAACATCTAAAACTTAAATA+AGG + chr8_2:52659073-52659092 None:intergenic 20.0%
!!! GTTAATTTAGAATTTTGGTT+TGG - chr8_2:52659269-52659288 Msa1254560:intron 20.0%
!! ATTGTCAAATTTGTATTTCA+TGG - chr8_2:52660181-52660200 Msa1254560:intron 20.0%
!! AAGTTTATGTATTAATAGAC+TGG - chr8_2:52660225-52660244 Msa1254560:intron 20.0%
!! AACAACAAAAATAGATTCTA+AGG + chr8_2:52660410-52660429 None:intergenic 20.0%
!!! TAGAATCTATTTTTGTTGTT+TGG - chr8_2:52660410-52660429 Msa1254560:five_prime_UTR 20.0%
!! TTATGTGTTATCGAATTAAT+TGG - chr8_2:52656883-52656902 Msa1254560:CDS 20.0%
!! GAATTGAAATTTCAGTAATT+TGG - chr8_2:52656905-52656924 Msa1254560:CDS 20.0%
!!! GTTATTTTTATGATCGTTTT+TGG - chr8_2:52656945-52656964 Msa1254560:intron 20.0%
!! AAACATGAGAAAATTGAATT+TGG - chr8_2:52657137-52657156 Msa1254560:intron 20.0%
!! TGAAAATTATCTCAATTCAA+AGG - chr8_2:52657189-52657208 Msa1254560:intron 20.0%
!! CAAATGAAATAATTAGATTC+TGG - chr8_2:52657528-52657547 Msa1254560:intron 20.0%
!!! TTTAGAAACATTTTCATAAC+TGG + chr8_2:52657939-52657958 None:intergenic 20.0%
!!! AAAGTGCATTTTAAAAACAT+GGG + chr8_2:52658006-52658025 None:intergenic 20.0%
!!! AAAAGTGCATTTTAAAAACA+TGG + chr8_2:52658007-52658026 None:intergenic 20.0%
!!! CAAGATAGTATTTCTATATT+TGG + chr8_2:52658307-52658326 None:intergenic 20.0%
!! CAAATATAGAAATACTATCT+TGG - chr8_2:52658305-52658324 Msa1254560:intron 20.0%
!!! ATTAGTTAACAAGTGTTTTA+AGG - chr8_2:52658404-52658423 Msa1254560:intron 20.0%
!!! TTAGTTAACAAGTGTTTTAA+GGG - chr8_2:52658405-52658424 Msa1254560:intron 20.0%
!! TGTGTATAACATCATAAATT+AGG + chr8_2:52658446-52658465 None:intergenic 20.0%
!! TAAATACTTGTGAGATTATT+TGG - chr8_2:52658717-52658736 Msa1254560:intron 20.0%
!! AAATACTTGTGAGATTATTT+GGG - chr8_2:52658718-52658737 Msa1254560:intron 20.0%
!! AAAACTGCTTATAACTTATA+GGG - chr8_2:52658811-52658830 Msa1254560:intron 20.0%
!!! ATAACTGTTTTGAAAAACAT+TGG + chr8_2:52658914-52658933 None:intergenic 20.0%
!!! AATGTTTTTCAAAACAGTTA+TGG - chr8_2:52658913-52658932 Msa1254560:CDS 20.0%
!!! CAACATCTAAAACTTAAATA+AGG + chr8_2:52659073-52659092 None:intergenic 20.0%
!!! GTTAATTTAGAATTTTGGTT+TGG - chr8_2:52659269-52659288 Msa1254560:intron 20.0%
!! ATTGTCAAATTTGTATTTCA+TGG - chr8_2:52660181-52660200 Msa1254560:intron 20.0%
!! AAGTTTATGTATTAATAGAC+TGG - chr8_2:52660225-52660244 Msa1254560:intron 20.0%
!! AACAACAAAAATAGATTCTA+AGG + chr8_2:52660410-52660429 None:intergenic 20.0%
!!! TAGAATCTATTTTTGTTGTT+TGG - chr8_2:52660410-52660429 Msa1254560:five_prime_UTR 20.0%
!! ACACAATCATAATGATTTGT+TGG - chr8_2:52656432-52656451 Msa1254560:three_prime_UTR 25.0%
!!! GATTTTTTTCTTTGCATTCA+TGG - chr8_2:52656607-52656626 Msa1254560:three_prime_UTR 25.0%
!! TGGTTCATCCTTTTATTATT+TGG - chr8_2:52657332-52657351 Msa1254560:intron 25.0%
!! GGTTCATCCTTTTATTATTT+GGG - chr8_2:52657333-52657352 Msa1254560:intron 25.0%
!! GTTCATCCTTTTATTATTTG+GGG - chr8_2:52657334-52657353 Msa1254560:intron 25.0%
! GTTTAACCCCAAATAATAAA+AGG + chr8_2:52657343-52657362 None:intergenic 25.0%
!! AATGTTTCAAGCTTTTAGAT+TGG - chr8_2:52657373-52657392 Msa1254560:intron 25.0%
! CATATATGATAATAAGGCAT+CGG + chr8_2:52657600-52657619 None:intergenic 25.0%
!!! TATTGTTTTTCTTGTGAAAC+AGG - chr8_2:52657830-52657849 Msa1254560:intron 25.0%
! AAACCACACATTCATATAAA+GGG + chr8_2:52658037-52658056 None:intergenic 25.0%
! TACAATATCAGATGTTACAT+TGG + chr8_2:52658221-52658240 None:intergenic 25.0%
!! TTATTAGTTTATACGCTAGA+AGG + chr8_2:52658268-52658287 None:intergenic 25.0%
! TTCTAGCGTATAAACTAATA+AGG - chr8_2:52658267-52658286 Msa1254560:intron 25.0%
! TTATAAGAGAAGGGAAAAAA+AGG + chr8_2:52658638-52658657 None:intergenic 25.0%
!! ATGAAAGCTTTATAAGAGAA+GGG + chr8_2:52658647-52658666 None:intergenic 25.0%
!! AATGAAAGCTTTATAAGAGA+AGG + chr8_2:52658648-52658667 None:intergenic 25.0%
! AAAGCTTTCATTTCAATTCA+AGG - chr8_2:52658656-52658675 Msa1254560:CDS 25.0%
! GAAAACTGCTTATAACTTAT+AGG - chr8_2:52658810-52658829 Msa1254560:intron 25.0%
! TGGAAGAATAAAAAACTGTT+TGG + chr8_2:52658894-52658913 None:intergenic 25.0%
!! TCCAAGATATTTTATACTGT+AGG - chr8_2:52658982-52659001 Msa1254560:intron 25.0%
!! CCAAGATATTTTATACTGTA+GGG - chr8_2:52658983-52659002 Msa1254560:intron 25.0%
!! TGATGAATTCAACTTTCTTT+TGG - chr8_2:52659111-52659130 Msa1254560:CDS 25.0%
! GACATTAATTAAAAGGGAAA+TGG - chr8_2:52659330-52659349 Msa1254560:intron 25.0%
! ACATAATAGGAATGAAGAAT+AGG + chr8_2:52660053-52660072 None:intergenic 25.0%
! ACTTAAGTTAAGAAAAAGGT+GGG + chr8_2:52660209-52660228 None:intergenic 25.0%
! AACTTAAGTTAAGAAAAAGG+TGG + chr8_2:52660210-52660229 None:intergenic 25.0%
! TATATATCTTCAAGCAAACA+AGG + chr8_2:52660273-52660292 None:intergenic 25.0%
!! ACACAATCATAATGATTTGT+TGG - chr8_2:52656432-52656451 Msa1254560:three_prime_UTR 25.0%
!!! GATTTTTTTCTTTGCATTCA+TGG - chr8_2:52656607-52656626 Msa1254560:three_prime_UTR 25.0%
!! TGGTTCATCCTTTTATTATT+TGG - chr8_2:52657332-52657351 Msa1254560:intron 25.0%
!! GGTTCATCCTTTTATTATTT+GGG - chr8_2:52657333-52657352 Msa1254560:intron 25.0%
!! GTTCATCCTTTTATTATTTG+GGG - chr8_2:52657334-52657353 Msa1254560:intron 25.0%
! GTTTAACCCCAAATAATAAA+AGG + chr8_2:52657343-52657362 None:intergenic 25.0%
!! AATGTTTCAAGCTTTTAGAT+TGG - chr8_2:52657373-52657392 Msa1254560:intron 25.0%
! CATATATGATAATAAGGCAT+CGG + chr8_2:52657600-52657619 None:intergenic 25.0%
!!! TATTGTTTTTCTTGTGAAAC+AGG - chr8_2:52657830-52657849 Msa1254560:intron 25.0%
! AAACCACACATTCATATAAA+GGG + chr8_2:52658037-52658056 None:intergenic 25.0%
! TACAATATCAGATGTTACAT+TGG + chr8_2:52658221-52658240 None:intergenic 25.0%
!! TTATTAGTTTATACGCTAGA+AGG + chr8_2:52658268-52658287 None:intergenic 25.0%
! TTCTAGCGTATAAACTAATA+AGG - chr8_2:52658267-52658286 Msa1254560:intron 25.0%
! TTATAAGAGAAGGGAAAAAA+AGG + chr8_2:52658638-52658657 None:intergenic 25.0%
!! ATGAAAGCTTTATAAGAGAA+GGG + chr8_2:52658647-52658666 None:intergenic 25.0%
!! AATGAAAGCTTTATAAGAGA+AGG + chr8_2:52658648-52658667 None:intergenic 25.0%
! AAAGCTTTCATTTCAATTCA+AGG - chr8_2:52658656-52658675 Msa1254560:CDS 25.0%
! GAAAACTGCTTATAACTTAT+AGG - chr8_2:52658810-52658829 Msa1254560:intron 25.0%
! TGGAAGAATAAAAAACTGTT+TGG + chr8_2:52658894-52658913 None:intergenic 25.0%
!! TCCAAGATATTTTATACTGT+AGG - chr8_2:52658982-52659001 Msa1254560:intron 25.0%
!! CCAAGATATTTTATACTGTA+GGG - chr8_2:52658983-52659002 Msa1254560:intron 25.0%
!! TGATGAATTCAACTTTCTTT+TGG - chr8_2:52659111-52659130 Msa1254560:CDS 25.0%
! GACATTAATTAAAAGGGAAA+TGG - chr8_2:52659330-52659349 Msa1254560:intron 25.0%
! ACATAATAGGAATGAAGAAT+AGG + chr8_2:52660053-52660072 None:intergenic 25.0%
! ACTTAAGTTAAGAAAAAGGT+GGG + chr8_2:52660209-52660228 None:intergenic 25.0%
! AACTTAAGTTAAGAAAAAGG+TGG + chr8_2:52660210-52660229 None:intergenic 25.0%
! TATATATCTTCAAGCAAACA+AGG + chr8_2:52660273-52660292 None:intergenic 25.0%
AACTAACAAACTAACCCATT+AGG + chr8_2:52656552-52656571 None:intergenic 30.0%
!! AATGGGTTAGTTTGTTAGTT+AGG - chr8_2:52656552-52656571 Msa1254560:three_prime_UTR 30.0%
!! ATGGGTTAGTTTGTTAGTTA+GGG - chr8_2:52656553-52656572 Msa1254560:three_prime_UTR 30.0%
! TTGCATTCATGGAAATTTTG+TGG - chr8_2:52656618-52656637 Msa1254560:three_prime_UTR 30.0%
TAATTGAAGCGAATAATTGG+AGG - chr8_2:52656659-52656678 Msa1254560:three_prime_UTR 30.0%
AAAATGAAAAAGCTCACAGT+GGG + chr8_2:52656836-52656855 None:intergenic 30.0%
!! TTTTTATGATCGTTTTTGGG+TGG - chr8_2:52656949-52656968 Msa1254560:intron 30.0%
TAGTTATAGATGTTGACATC+TGG - chr8_2:52657006-52657025 Msa1254560:intron 30.0%
CATCTGGTTAATGATGTTTA+CGG - chr8_2:52657022-52657041 Msa1254560:intron 30.0%
ATGTTTACGGAAAATTGAGT+TGG - chr8_2:52657035-52657054 Msa1254560:intron 30.0%
ACCTATTAAGGTGAATAAGT+GGG - chr8_2:52657239-52657258 Msa1254560:CDS 30.0%
GAAAATTACGATGAATGATG+TGG - chr8_2:52657484-52657503 Msa1254560:intron 30.0%
AGCGCACATATATGATAATA+AGG + chr8_2:52657606-52657625 None:intergenic 30.0%
! TTGCATCTTTTCACTTTGTT+TGG - chr8_2:52657654-52657673 Msa1254560:intron 30.0%
!! TTTTCACTTTGTTTGGTAAC+AGG - chr8_2:52657661-52657680 Msa1254560:intron 30.0%
!! TTTTAAAAACATGGGACACA+AGG + chr8_2:52657998-52658017 None:intergenic 30.0%
ATTCCCTTTATATGAATGTG+TGG - chr8_2:52658031-52658050 Msa1254560:intron 30.0%
GAAACCACACATTCATATAA+AGG + chr8_2:52658038-52658057 None:intergenic 30.0%
TGTGTGGTTTCTTTATAAAC+TGG - chr8_2:52658047-52658066 Msa1254560:intron 30.0%
TAGAAATACTATCTTGGAAG+TGG - chr8_2:52658311-52658330 Msa1254560:intron 30.0%
GAATTATCAATAATGAGTCG+TGG + chr8_2:52658509-52658528 None:intergenic 30.0%
AAGTTACTCTTTAGTAAGAC+TGG + chr8_2:52658559-52658578 None:intergenic 30.0%
ATTTCAATTCAAGGTCTCTT+TGG - chr8_2:52658665-52658684 Msa1254560:CDS 30.0%
ACATATTTGAGCTTATCTAC+TGG - chr8_2:52658692-52658711 Msa1254560:intron 30.0%
!!! GTTATGGTCATGTTTTTTGT+TGG - chr8_2:52658929-52658948 Msa1254560:CDS 30.0%
CCCTACAGTATAAAATATCT+TGG + chr8_2:52658986-52659005 None:intergenic 30.0%
!!! ATGCCATTTTTTGCTCTATT+TGG - chr8_2:52659416-52659435 Msa1254560:intron 30.0%
TCTCCAAATAGAGCAAAAAA+TGG + chr8_2:52659422-52659441 None:intergenic 30.0%
AACAGTAAAAGAACATGCAA+AGG + chr8_2:52659475-52659494 None:intergenic 30.0%
TTCAAGTCACAAGATAGTTA+AGG + chr8_2:52659517-52659536 None:intergenic 30.0%
AGACTTTCATATCTTCTTGA+AGG - chr8_2:52659702-52659721 Msa1254560:intron 30.0%
GACTTTCATATCTTCTTGAA+GGG - chr8_2:52659703-52659722 Msa1254560:intron 30.0%
! TTCTTTTTCTTTTGCTTTGG+TGG + chr8_2:52659932-52659951 None:intergenic 30.0%
! CTCTTCTTTTTCTTTTGCTT+TGG + chr8_2:52659935-52659954 None:intergenic 30.0%
AAAGAAGAGTAAAGCTCAAA+AGG - chr8_2:52659946-52659965 Msa1254560:intron 30.0%
TCCTATTATGTTGAAGAAGT+TGG - chr8_2:52660062-52660081 Msa1254560:CDS 30.0%
TCCAACTTCTTCAACATAAT+AGG + chr8_2:52660066-52660085 None:intergenic 30.0%
AGTTGTTCTTAGTTGTCATT+TGG - chr8_2:52660349-52660368 Msa1254560:five_prime_UTR 30.0%
TCATTTGGTTGTTGAATAGT+TGG - chr8_2:52660364-52660383 Msa1254560:five_prime_UTR 30.0%
AACTAACAAACTAACCCATT+AGG + chr8_2:52656552-52656571 None:intergenic 30.0%
!! AATGGGTTAGTTTGTTAGTT+AGG - chr8_2:52656552-52656571 Msa1254560:three_prime_UTR 30.0%
!! ATGGGTTAGTTTGTTAGTTA+GGG - chr8_2:52656553-52656572 Msa1254560:three_prime_UTR 30.0%
! TTGCATTCATGGAAATTTTG+TGG - chr8_2:52656618-52656637 Msa1254560:three_prime_UTR 30.0%
TAATTGAAGCGAATAATTGG+AGG - chr8_2:52656659-52656678 Msa1254560:three_prime_UTR 30.0%
AAAATGAAAAAGCTCACAGT+GGG + chr8_2:52656836-52656855 None:intergenic 30.0%
!! TTTTTATGATCGTTTTTGGG+TGG - chr8_2:52656949-52656968 Msa1254560:intron 30.0%
TAGTTATAGATGTTGACATC+TGG - chr8_2:52657006-52657025 Msa1254560:intron 30.0%
CATCTGGTTAATGATGTTTA+CGG - chr8_2:52657022-52657041 Msa1254560:intron 30.0%
ATGTTTACGGAAAATTGAGT+TGG - chr8_2:52657035-52657054 Msa1254560:intron 30.0%
ACCTATTAAGGTGAATAAGT+GGG - chr8_2:52657239-52657258 Msa1254560:CDS 30.0%
GAAAATTACGATGAATGATG+TGG - chr8_2:52657484-52657503 Msa1254560:intron 30.0%
AGCGCACATATATGATAATA+AGG + chr8_2:52657606-52657625 None:intergenic 30.0%
! TTGCATCTTTTCACTTTGTT+TGG - chr8_2:52657654-52657673 Msa1254560:intron 30.0%
!! TTTTCACTTTGTTTGGTAAC+AGG - chr8_2:52657661-52657680 Msa1254560:intron 30.0%
!! TTTTAAAAACATGGGACACA+AGG + chr8_2:52657998-52658017 None:intergenic 30.0%
ATTCCCTTTATATGAATGTG+TGG - chr8_2:52658031-52658050 Msa1254560:intron 30.0%
GAAACCACACATTCATATAA+AGG + chr8_2:52658038-52658057 None:intergenic 30.0%
TGTGTGGTTTCTTTATAAAC+TGG - chr8_2:52658047-52658066 Msa1254560:intron 30.0%
TAGAAATACTATCTTGGAAG+TGG - chr8_2:52658311-52658330 Msa1254560:intron 30.0%
GAATTATCAATAATGAGTCG+TGG + chr8_2:52658509-52658528 None:intergenic 30.0%
AAGTTACTCTTTAGTAAGAC+TGG + chr8_2:52658559-52658578 None:intergenic 30.0%
ATTTCAATTCAAGGTCTCTT+TGG - chr8_2:52658665-52658684 Msa1254560:CDS 30.0%
ACATATTTGAGCTTATCTAC+TGG - chr8_2:52658692-52658711 Msa1254560:intron 30.0%
!!! GTTATGGTCATGTTTTTTGT+TGG - chr8_2:52658929-52658948 Msa1254560:CDS 30.0%
CCCTACAGTATAAAATATCT+TGG + chr8_2:52658986-52659005 None:intergenic 30.0%
!!! ATGCCATTTTTTGCTCTATT+TGG - chr8_2:52659416-52659435 Msa1254560:intron 30.0%
TCTCCAAATAGAGCAAAAAA+TGG + chr8_2:52659422-52659441 None:intergenic 30.0%
AACAGTAAAAGAACATGCAA+AGG + chr8_2:52659475-52659494 None:intergenic 30.0%
TTCAAGTCACAAGATAGTTA+AGG + chr8_2:52659517-52659536 None:intergenic 30.0%
AGACTTTCATATCTTCTTGA+AGG - chr8_2:52659702-52659721 Msa1254560:intron 30.0%
GACTTTCATATCTTCTTGAA+GGG - chr8_2:52659703-52659722 Msa1254560:intron 30.0%
! TTCTTTTTCTTTTGCTTTGG+TGG + chr8_2:52659932-52659951 None:intergenic 30.0%
! CTCTTCTTTTTCTTTTGCTT+TGG + chr8_2:52659935-52659954 None:intergenic 30.0%
AAAGAAGAGTAAAGCTCAAA+AGG - chr8_2:52659946-52659965 Msa1254560:intron 30.0%
TCCTATTATGTTGAAGAAGT+TGG - chr8_2:52660062-52660081 Msa1254560:CDS 30.0%
TCCAACTTCTTCAACATAAT+AGG + chr8_2:52660066-52660085 None:intergenic 30.0%
AGTTGTTCTTAGTTGTCATT+TGG - chr8_2:52660349-52660368 Msa1254560:five_prime_UTR 30.0%
TCATTTGGTTGTTGAATAGT+TGG - chr8_2:52660364-52660383 Msa1254560:five_prime_UTR 30.0%
TTAAAGAACGAACGCTTCAA+CGG - chr8_2:52656466-52656485 Msa1254560:three_prime_UTR 35.0%
GCGTAATTGAAGCGAATAAT+TGG - chr8_2:52656656-52656675 Msa1254560:three_prime_UTR 35.0%
! TGAGTGATTTGGAGTGATAA+AGG - chr8_2:52656688-52656707 Msa1254560:three_prime_UTR 35.0%
AGTGATAAAGGTGAAAGATC+TGG - chr8_2:52656700-52656719 Msa1254560:three_prime_UTR 35.0%
TAAAGGTGAAAGATCTGGAT+AGG - chr8_2:52656705-52656724 Msa1254560:three_prime_UTR 35.0%
AAAGGTGAAAGATCTGGATA+GGG - chr8_2:52656706-52656725 Msa1254560:three_prime_UTR 35.0%
! TTCATCAAGTGTGTTACTGT+TGG - chr8_2:52656755-52656774 Msa1254560:three_prime_UTR 35.0%
! TCATCAAGTGTGTTACTGTT+GGG - chr8_2:52656756-52656775 Msa1254560:three_prime_UTR 35.0%
AAATGAAAAAGCTCACAGTG+GGG + chr8_2:52656835-52656854 None:intergenic 35.0%
GAAAATGAAAAAGCTCACAG+TGG + chr8_2:52656837-52656856 None:intergenic 35.0%
! TTGAATTTGGAATGTTTGCG+TGG - chr8_2:52657150-52657169 Msa1254560:intron 35.0%
CAAAGGAAATTCTAGTCTAG+TGG - chr8_2:52657206-52657225 Msa1254560:intron 35.0%
GGCTAGAAATTCACCTATTA+AGG - chr8_2:52657227-52657246 Msa1254560:CDS 35.0%
CACCTATTAAGGTGAATAAG+TGG - chr8_2:52657238-52657257 Msa1254560:CDS 35.0%
CCTATTAAGGTGAATAAGTG+GGG - chr8_2:52657240-52657259 Msa1254560:CDS 35.0%
AGAATCTAATGACACGTAGA+AGG + chr8_2:52657566-52657585 None:intergenic 35.0%
! TTCTACGTGTCATTAGATTC+TGG - chr8_2:52657565-52657584 Msa1254560:intron 35.0%
GCACTGTGTACATTGTAAAA+AGG + chr8_2:52657797-52657816 None:intergenic 35.0%
! TTAAGACCTTTGAGTTATCG+TGG - chr8_2:52657872-52657891 Msa1254560:intron 35.0%
!! CATAAACTCTGAAACACAGT+GGG + chr8_2:52657973-52657992 None:intergenic 35.0%
TTTGTGCCAACCAGAATAAT+GGG + chr8_2:52658177-52658196 None:intergenic 35.0%
AAGCTTGGTAAGTCTATTTC+TGG - chr8_2:52658195-52658214 Msa1254560:intron 35.0%
AAAGAGTAACTTCTTGCTTC+CGG - chr8_2:52658567-52658586 Msa1254560:intron 35.0%
CTTATGAACACAACTTTGCA+TGG - chr8_2:52658745-52658764 Msa1254560:intron 35.0%
!!! CATTTTTAGTCAGAATGACG+TGG + chr8_2:52659299-52659318 None:intergenic 35.0%
AGGGAAATGGTCATTAATGA+TGG - chr8_2:52659343-52659362 Msa1254560:intron 35.0%
! CTGTTTTGTCAAATAAGAGC+TGG - chr8_2:52659490-52659509 Msa1254560:intron 35.0%
AAACACAATATTCACCTGAG+CGG + chr8_2:52659606-52659625 None:intergenic 35.0%
TCAGGTGAATATTGTGTTTC+TGG - chr8_2:52659607-52659626 Msa1254560:intron 35.0%
GAACTGCATTCAATATAAGC+AGG + chr8_2:52659757-52659776 None:intergenic 35.0%
AGCAAATCACAATATCGAAC+AGG + chr8_2:52659972-52659991 None:intergenic 35.0%
!! GTTCGATATTGTGATTTGCT+AGG - chr8_2:52659972-52659991 Msa1254560:intron 35.0%
!! GATATTGTGATTTGCTAGGT+CGG - chr8_2:52659976-52659995 Msa1254560:intron 35.0%
GAGAAATACATGTTGGAGAA+TGG + chr8_2:52660020-52660039 None:intergenic 35.0%
AAGAGGAGAGAAATACATGT+TGG + chr8_2:52660027-52660046 None:intergenic 35.0%
GAATGAAGAATAGGAAGAAG+AGG + chr8_2:52660044-52660063 None:intergenic 35.0%
CTAAATCTCGTTGAAGCATA+AGG - chr8_2:52660118-52660137 Msa1254560:five_prime_UTR 35.0%
TTAAAGAACGAACGCTTCAA+CGG - chr8_2:52656466-52656485 Msa1254560:three_prime_UTR 35.0%
GCGTAATTGAAGCGAATAAT+TGG - chr8_2:52656656-52656675 Msa1254560:three_prime_UTR 35.0%
! TGAGTGATTTGGAGTGATAA+AGG - chr8_2:52656688-52656707 Msa1254560:three_prime_UTR 35.0%
AGTGATAAAGGTGAAAGATC+TGG - chr8_2:52656700-52656719 Msa1254560:three_prime_UTR 35.0%
TAAAGGTGAAAGATCTGGAT+AGG - chr8_2:52656705-52656724 Msa1254560:three_prime_UTR 35.0%
AAAGGTGAAAGATCTGGATA+GGG - chr8_2:52656706-52656725 Msa1254560:three_prime_UTR 35.0%
! TTCATCAAGTGTGTTACTGT+TGG - chr8_2:52656755-52656774 Msa1254560:three_prime_UTR 35.0%
! TCATCAAGTGTGTTACTGTT+GGG - chr8_2:52656756-52656775 Msa1254560:three_prime_UTR 35.0%
AAATGAAAAAGCTCACAGTG+GGG + chr8_2:52656835-52656854 None:intergenic 35.0%
GAAAATGAAAAAGCTCACAG+TGG + chr8_2:52656837-52656856 None:intergenic 35.0%
! TTGAATTTGGAATGTTTGCG+TGG - chr8_2:52657150-52657169 Msa1254560:intron 35.0%
CAAAGGAAATTCTAGTCTAG+TGG - chr8_2:52657206-52657225 Msa1254560:intron 35.0%
GGCTAGAAATTCACCTATTA+AGG - chr8_2:52657227-52657246 Msa1254560:CDS 35.0%
CACCTATTAAGGTGAATAAG+TGG - chr8_2:52657238-52657257 Msa1254560:CDS 35.0%
CCTATTAAGGTGAATAAGTG+GGG - chr8_2:52657240-52657259 Msa1254560:CDS 35.0%
AGAATCTAATGACACGTAGA+AGG + chr8_2:52657566-52657585 None:intergenic 35.0%
! TTCTACGTGTCATTAGATTC+TGG - chr8_2:52657565-52657584 Msa1254560:intron 35.0%
GCACTGTGTACATTGTAAAA+AGG + chr8_2:52657797-52657816 None:intergenic 35.0%
! TTAAGACCTTTGAGTTATCG+TGG - chr8_2:52657872-52657891 Msa1254560:intron 35.0%
!! CATAAACTCTGAAACACAGT+GGG + chr8_2:52657973-52657992 None:intergenic 35.0%
TTTGTGCCAACCAGAATAAT+GGG + chr8_2:52658177-52658196 None:intergenic 35.0%
AAGCTTGGTAAGTCTATTTC+TGG - chr8_2:52658195-52658214 Msa1254560:intron 35.0%
AAAGAGTAACTTCTTGCTTC+CGG - chr8_2:52658567-52658586 Msa1254560:intron 35.0%
CTTATGAACACAACTTTGCA+TGG - chr8_2:52658745-52658764 Msa1254560:intron 35.0%
!!! CATTTTTAGTCAGAATGACG+TGG + chr8_2:52659299-52659318 None:intergenic 35.0%
AGGGAAATGGTCATTAATGA+TGG - chr8_2:52659343-52659362 Msa1254560:intron 35.0%
! CTGTTTTGTCAAATAAGAGC+TGG - chr8_2:52659490-52659509 Msa1254560:intron 35.0%
AAACACAATATTCACCTGAG+CGG + chr8_2:52659606-52659625 None:intergenic 35.0%
TCAGGTGAATATTGTGTTTC+TGG - chr8_2:52659607-52659626 Msa1254560:intron 35.0%
GAACTGCATTCAATATAAGC+AGG + chr8_2:52659757-52659776 None:intergenic 35.0%
AGCAAATCACAATATCGAAC+AGG + chr8_2:52659972-52659991 None:intergenic 35.0%
!! GTTCGATATTGTGATTTGCT+AGG - chr8_2:52659972-52659991 Msa1254560:intron 35.0%
!! GATATTGTGATTTGCTAGGT+CGG - chr8_2:52659976-52659995 Msa1254560:intron 35.0%
GAGAAATACATGTTGGAGAA+TGG + chr8_2:52660020-52660039 None:intergenic 35.0%
AAGAGGAGAGAAATACATGT+TGG + chr8_2:52660027-52660046 None:intergenic 35.0%
GAATGAAGAATAGGAAGAAG+AGG + chr8_2:52660044-52660063 None:intergenic 35.0%
CTAAATCTCGTTGAAGCATA+AGG - chr8_2:52660118-52660137 Msa1254560:five_prime_UTR 35.0%
! TCATTTTCTCACGCTCCTAA+TGG - chr8_2:52656534-52656553 Msa1254560:three_prime_UTR 40.0%
! CATTTTCTCACGCTCCTAAT+GGG - chr8_2:52656535-52656554 Msa1254560:three_prime_UTR 40.0%
! CATCAAGTGTGTTACTGTTG+GGG - chr8_2:52656757-52656776 Msa1254560:three_prime_UTR 40.0%
CCCCACTTATTCACCTTAAT+AGG + chr8_2:52657243-52657262 None:intergenic 40.0%
ATGTTGCAATATGTAGGAGC+CGG + chr8_2:52657283-52657302 None:intergenic 40.0%
GTAGGGATGTTGCAATATGT+AGG + chr8_2:52657289-52657308 None:intergenic 40.0%
TGAGCATAGCTCAATTGGTA+GGG + chr8_2:52657306-52657325 None:intergenic 40.0%
AAGGGGAAGATCACAACAAA+AGG + chr8_2:52657410-52657429 None:intergenic 40.0%
GTCATTAGATTCTGGCATTG+TGG - chr8_2:52657573-52657592 Msa1254560:intron 40.0%
CTGAAATTGTCGAAGACAGT+TGG + chr8_2:52657695-52657714 None:intergenic 40.0%
CGACAATTTCAGTGCAAATG+TGG - chr8_2:52657703-52657722 Msa1254560:intron 40.0%
AGTGCAAATGTGGTTGTGAA+TGG - chr8_2:52657713-52657732 Msa1254560:intron 40.0%
!! AATGGAAGCACTGTGAATCT+GGG - chr8_2:52657731-52657750 Msa1254560:intron 40.0%
TTCTTGTGAAACAGGACAAG+AGG - chr8_2:52657838-52657857 Msa1254560:intron 40.0%
!! GCATAAACTCTGAAACACAG+TGG + chr8_2:52657974-52657993 None:intergenic 40.0%
CTTTGTGCCAACCAGAATAA+TGG + chr8_2:52658178-52658197 None:intergenic 40.0%
TAACTTCTTGCTTCCGGTAA+AGG - chr8_2:52658573-52658592 Msa1254560:intron 40.0%
AACTTCTTGCTTCCGGTAAA+GGG - chr8_2:52658574-52658593 Msa1254560:intron 40.0%
!!! TTTTGGTTTCTTCTCGACAC+CGG - chr8_2:52659128-52659147 Msa1254560:CDS 40.0%
! ACTGCCTAATGCCTTTTATC+CGG + chr8_2:52659150-52659169 None:intergenic 40.0%
ACTTTCTAGACGCAAGTACA+TGG + chr8_2:52659209-52659228 None:intergenic 40.0%
TGTACTTGCGTCTAGAAAGT+AGG - chr8_2:52659209-52659228 Msa1254560:intron 40.0%
AATGATGGCATGATGCAGTA+TGG - chr8_2:52659358-52659377 Msa1254560:intron 40.0%
TGGCATGCAAGTTATTCACA+CGG + chr8_2:52659402-52659421 None:intergenic 40.0%
CTTGAAATGAGACAGACCTT+CGG - chr8_2:52659531-52659550 Msa1254560:intron 40.0%
TTGAAATGAGACAGACCTTC+GGG - chr8_2:52659532-52659551 Msa1254560:intron 40.0%
ATGCAGTTCAAAATCACAGC+AGG - chr8_2:52659768-52659787 Msa1254560:intron 40.0%
CTTAAACGTCGTGTACAAGA+AGG + chr8_2:52659816-52659835 None:intergenic 40.0%
TGGTTGAAGGACAACTCTTA+TGG + chr8_2:52659912-52659931 None:intergenic 40.0%
!! TCTTTTGCTTTGGTGGTTGA+AGG + chr8_2:52659925-52659944 None:intergenic 40.0%
TGAAGAAGTTGGAGTCTATG+TGG - chr8_2:52660073-52660092 Msa1254560:CDS 40.0%
GAAGAAGTTGGAGTCTATGT+GGG - chr8_2:52660074-52660093 Msa1254560:CDS 40.0%
AATCTCGTTGAAGCATAAGG+TGG - chr8_2:52660121-52660140 Msa1254560:five_prime_UTR 40.0%
TAGACTGGAATATCCCAGTT+AGG - chr8_2:52660240-52660259 Msa1254560:intron 40.0%
ACAAGGTAGTCATCCTAACT+GGG + chr8_2:52660256-52660275 None:intergenic 40.0%
AACAAGGTAGTCATCCTAAC+TGG + chr8_2:52660257-52660276 None:intergenic 40.0%
! TCATTTTCTCACGCTCCTAA+TGG - chr8_2:52656534-52656553 Msa1254560:three_prime_UTR 40.0%
! CATTTTCTCACGCTCCTAAT+GGG - chr8_2:52656535-52656554 Msa1254560:three_prime_UTR 40.0%
! CATCAAGTGTGTTACTGTTG+GGG - chr8_2:52656757-52656776 Msa1254560:three_prime_UTR 40.0%
CCCCACTTATTCACCTTAAT+AGG + chr8_2:52657243-52657262 None:intergenic 40.0%
ATGTTGCAATATGTAGGAGC+CGG + chr8_2:52657283-52657302 None:intergenic 40.0%
GTAGGGATGTTGCAATATGT+AGG + chr8_2:52657289-52657308 None:intergenic 40.0%
TGAGCATAGCTCAATTGGTA+GGG + chr8_2:52657306-52657325 None:intergenic 40.0%
AAGGGGAAGATCACAACAAA+AGG + chr8_2:52657410-52657429 None:intergenic 40.0%
GTCATTAGATTCTGGCATTG+TGG - chr8_2:52657573-52657592 Msa1254560:intron 40.0%
CTGAAATTGTCGAAGACAGT+TGG + chr8_2:52657695-52657714 None:intergenic 40.0%
CGACAATTTCAGTGCAAATG+TGG - chr8_2:52657703-52657722 Msa1254560:intron 40.0%
AGTGCAAATGTGGTTGTGAA+TGG - chr8_2:52657713-52657732 Msa1254560:intron 40.0%
!! AATGGAAGCACTGTGAATCT+GGG - chr8_2:52657731-52657750 Msa1254560:intron 40.0%
TTCTTGTGAAACAGGACAAG+AGG - chr8_2:52657838-52657857 Msa1254560:intron 40.0%
!! GCATAAACTCTGAAACACAG+TGG + chr8_2:52657974-52657993 None:intergenic 40.0%
CTTTGTGCCAACCAGAATAA+TGG + chr8_2:52658178-52658197 None:intergenic 40.0%
TAACTTCTTGCTTCCGGTAA+AGG - chr8_2:52658573-52658592 Msa1254560:intron 40.0%
AACTTCTTGCTTCCGGTAAA+GGG - chr8_2:52658574-52658593 Msa1254560:intron 40.0%
!!! TTTTGGTTTCTTCTCGACAC+CGG - chr8_2:52659128-52659147 Msa1254560:CDS 40.0%
! ACTGCCTAATGCCTTTTATC+CGG + chr8_2:52659150-52659169 None:intergenic 40.0%
ACTTTCTAGACGCAAGTACA+TGG + chr8_2:52659209-52659228 None:intergenic 40.0%
TGTACTTGCGTCTAGAAAGT+AGG - chr8_2:52659209-52659228 Msa1254560:intron 40.0%
AATGATGGCATGATGCAGTA+TGG - chr8_2:52659358-52659377 Msa1254560:intron 40.0%
TGGCATGCAAGTTATTCACA+CGG + chr8_2:52659402-52659421 None:intergenic 40.0%
CTTGAAATGAGACAGACCTT+CGG - chr8_2:52659531-52659550 Msa1254560:intron 40.0%
TTGAAATGAGACAGACCTTC+GGG - chr8_2:52659532-52659551 Msa1254560:intron 40.0%
ATGCAGTTCAAAATCACAGC+AGG - chr8_2:52659768-52659787 Msa1254560:intron 40.0%
CTTAAACGTCGTGTACAAGA+AGG + chr8_2:52659816-52659835 None:intergenic 40.0%
TGGTTGAAGGACAACTCTTA+TGG + chr8_2:52659912-52659931 None:intergenic 40.0%
!! TCTTTTGCTTTGGTGGTTGA+AGG + chr8_2:52659925-52659944 None:intergenic 40.0%
TGAAGAAGTTGGAGTCTATG+TGG - chr8_2:52660073-52660092 Msa1254560:CDS 40.0%
GAAGAAGTTGGAGTCTATGT+GGG - chr8_2:52660074-52660093 Msa1254560:CDS 40.0%
AATCTCGTTGAAGCATAAGG+TGG - chr8_2:52660121-52660140 Msa1254560:five_prime_UTR 40.0%
TAGACTGGAATATCCCAGTT+AGG - chr8_2:52660240-52660259 Msa1254560:intron 40.0%
ACAAGGTAGTCATCCTAACT+GGG + chr8_2:52660256-52660275 None:intergenic 40.0%
AACAAGGTAGTCATCCTAAC+TGG + chr8_2:52660257-52660276 None:intergenic 40.0%
GCTTCAACGGCAAAATTTCC+CGG - chr8_2:52656479-52656498 Msa1254560:three_prime_UTR 45.0%
CTTCAACGGCAAAATTTCCC+GGG - chr8_2:52656480-52656499 Msa1254560:three_prime_UTR 45.0%
TGAAAGAGAGACAAGGAACC+CGG + chr8_2:52656501-52656520 None:intergenic 45.0%
GAAAGAAGATGAGCGCTTCT+AGG - chr8_2:52656732-52656751 Msa1254560:three_prime_UTR 45.0%
! AAGTGTGTTACTGTTGGGGA+TGG - chr8_2:52656761-52656780 Msa1254560:three_prime_UTR 45.0%
AGGTGAATAAGTGGGGAATC+CGG - chr8_2:52657247-52657266 Msa1254560:CDS 45.0%
TGTTGCAATATGTAGGAGCC+GGG + chr8_2:52657282-52657301 None:intergenic 45.0%
GTGAGCATAGCTCAATTGGT+AGG + chr8_2:52657307-52657326 None:intergenic 45.0%
ACCAATTGAGCTATGCTCAC+AGG - chr8_2:52657307-52657326 Msa1254560:intron 45.0%
TCCTGTGAGCATAGCTCAAT+TGG + chr8_2:52657311-52657330 None:intergenic 45.0%
!! GAATGGAAGCACTGTGAATC+TGG - chr8_2:52657730-52657749 Msa1254560:intron 45.0%
CACTGTGAATCTGGGTTTGT+GGG - chr8_2:52657739-52657758 Msa1254560:intron 45.0%
ACAATGTACACAGTGCTGTC+TGG - chr8_2:52657801-52657820 Msa1254560:intron 45.0%
TCAGCACCACGATAACTCAA+AGG + chr8_2:52657881-52657900 None:intergenic 45.0%
CGCTTTCTCACTCATAAGCA+AGG - chr8_2:52657913-52657932 Msa1254560:intron 45.0%
GGTGCATAATGCTTCAACTC+TGG + chr8_2:52658147-52658166 None:intergenic 45.0%
! GAGTTGAAGCATTATGCACC+TGG - chr8_2:52658147-52658166 Msa1254560:intron 45.0%
ACCTGGTGTTCCCATTATTC+TGG - chr8_2:52658164-52658183 Msa1254560:intron 45.0%
! ACCAGAATAATGGGAACACC+AGG + chr8_2:52658168-52658187 None:intergenic 45.0%
GGTGTTCCCATTATTCTGGT+TGG - chr8_2:52658168-52658187 Msa1254560:intron 45.0%
! ATTCTGGTTGGCACAAAGCT+TGG - chr8_2:52658180-52658199 Msa1254560:intron 45.0%
ACTTCTTGCTTCCGGTAAAG+GGG - chr8_2:52658575-52658594 Msa1254560:intron 45.0%
TCTTCTCGACACCGGATAAA+AGG - chr8_2:52659136-52659155 Msa1254560:intron 45.0%
!! GACACCGGATAAAAGGCATT+AGG - chr8_2:52659143-52659162 Msa1254560:intron 45.0%
CTTGCGTCTAGAAAGTAGGA+AGG - chr8_2:52659213-52659232 Msa1254560:intron 45.0%
GGATGACAAGCAGTTCTTTG+TGG - chr8_2:52659553-52659572 Msa1254560:intron 45.0%
TAATAGGAACAGCACCAGGA+TGG + chr8_2:52659580-52659599 None:intergenic 45.0%
TCGTTGAAGCATAAGGTGGT+TGG - chr8_2:52660125-52660144 Msa1254560:five_prime_UTR 45.0%
! TGGTTGGTGCTTTGCTTTCT+TGG - chr8_2:52660141-52660160 Msa1254560:five_prime_UTR 45.0%
GCTTCAACGGCAAAATTTCC+CGG - chr8_2:52656479-52656498 Msa1254560:three_prime_UTR 45.0%
CTTCAACGGCAAAATTTCCC+GGG - chr8_2:52656480-52656499 Msa1254560:three_prime_UTR 45.0%
TGAAAGAGAGACAAGGAACC+CGG + chr8_2:52656501-52656520 None:intergenic 45.0%
GAAAGAAGATGAGCGCTTCT+AGG - chr8_2:52656732-52656751 Msa1254560:three_prime_UTR 45.0%
! AAGTGTGTTACTGTTGGGGA+TGG - chr8_2:52656761-52656780 Msa1254560:three_prime_UTR 45.0%
AGGTGAATAAGTGGGGAATC+CGG - chr8_2:52657247-52657266 Msa1254560:CDS 45.0%
TGTTGCAATATGTAGGAGCC+GGG + chr8_2:52657282-52657301 None:intergenic 45.0%
GTGAGCATAGCTCAATTGGT+AGG + chr8_2:52657307-52657326 None:intergenic 45.0%
ACCAATTGAGCTATGCTCAC+AGG - chr8_2:52657307-52657326 Msa1254560:intron 45.0%
TCCTGTGAGCATAGCTCAAT+TGG + chr8_2:52657311-52657330 None:intergenic 45.0%
!! GAATGGAAGCACTGTGAATC+TGG - chr8_2:52657730-52657749 Msa1254560:intron 45.0%
CACTGTGAATCTGGGTTTGT+GGG - chr8_2:52657739-52657758 Msa1254560:intron 45.0%
ACAATGTACACAGTGCTGTC+TGG - chr8_2:52657801-52657820 Msa1254560:intron 45.0%
TCAGCACCACGATAACTCAA+AGG + chr8_2:52657881-52657900 None:intergenic 45.0%
CGCTTTCTCACTCATAAGCA+AGG - chr8_2:52657913-52657932 Msa1254560:intron 45.0%
GGTGCATAATGCTTCAACTC+TGG + chr8_2:52658147-52658166 None:intergenic 45.0%
! GAGTTGAAGCATTATGCACC+TGG - chr8_2:52658147-52658166 Msa1254560:intron 45.0%
ACCTGGTGTTCCCATTATTC+TGG - chr8_2:52658164-52658183 Msa1254560:intron 45.0%
! ACCAGAATAATGGGAACACC+AGG + chr8_2:52658168-52658187 None:intergenic 45.0%
GGTGTTCCCATTATTCTGGT+TGG - chr8_2:52658168-52658187 Msa1254560:intron 45.0%
! ATTCTGGTTGGCACAAAGCT+TGG - chr8_2:52658180-52658199 Msa1254560:intron 45.0%
ACTTCTTGCTTCCGGTAAAG+GGG - chr8_2:52658575-52658594 Msa1254560:intron 45.0%
TCTTCTCGACACCGGATAAA+AGG - chr8_2:52659136-52659155 Msa1254560:intron 45.0%
!! GACACCGGATAAAAGGCATT+AGG - chr8_2:52659143-52659162 Msa1254560:intron 45.0%
CTTGCGTCTAGAAAGTAGGA+AGG - chr8_2:52659213-52659232 Msa1254560:intron 45.0%
GGATGACAAGCAGTTCTTTG+TGG - chr8_2:52659553-52659572 Msa1254560:intron 45.0%
TAATAGGAACAGCACCAGGA+TGG + chr8_2:52659580-52659599 None:intergenic 45.0%
TCGTTGAAGCATAAGGTGGT+TGG - chr8_2:52660125-52660144 Msa1254560:five_prime_UTR 45.0%
! TGGTTGGTGCTTTGCTTTCT+TGG - chr8_2:52660141-52660160 Msa1254560:five_prime_UTR 45.0%
GAAAGAGAGACAAGGAACCC+GGG + chr8_2:52656500-52656519 None:intergenic 50.0%
TCGCGCATGAAAGAGAGACA+AGG + chr8_2:52656508-52656527 None:intergenic 50.0%
! GGAGGTGTGTGTGAGTGATT+TGG - chr8_2:52656677-52656696 Msa1254560:three_prime_UTR 50.0%
GAAAAAGCTCACAGTGGGGA+AGG + chr8_2:52656831-52656850 None:intergenic 50.0%
GGTGAATAAGTGGGGAATCC+GGG - chr8_2:52657248-52657267 Msa1254560:CDS 50.0%
GTGAATAAGTGGGGAATCCG+GGG - chr8_2:52657249-52657268 Msa1254560:CDS 50.0%
GTTGCAATATGTAGGAGCCG+GGG + chr8_2:52657281-52657300 None:intergenic 50.0%
TTGAGCTATGCTCACAGGAC+TGG - chr8_2:52657312-52657331 Msa1254560:intron 50.0%
GCACTGTGAATCTGGGTTTG+TGG - chr8_2:52657738-52657757 Msa1254560:intron 50.0%
ACGTGCTGTCTCATTTCCAG+TGG - chr8_2:52658118-52658137 Msa1254560:intron 50.0%
!! GCTTCAACTCTGGAATCCAC+TGG + chr8_2:52658137-52658156 None:intergenic 50.0%
TTCACAGTTCGCCCCTTTAC+CGG + chr8_2:52658589-52658608 None:intergenic 50.0%
GTAAAGGGGCGAACTGTGAA+GGG - chr8_2:52658589-52658608 Msa1254560:intron 50.0%
AGAACTGCTTGTCATCCCGA+AGG + chr8_2:52659550-52659569 None:intergenic 50.0%
CAGTTCTTTGTGGACCATCC+TGG - chr8_2:52659563-52659582 Msa1254560:intron 50.0%
GTGGTAATAGGAACAGCACC+AGG + chr8_2:52659584-52659603 None:intergenic 50.0%
TGTTCCTATTACCACCGCTC+AGG - chr8_2:52659589-52659608 Msa1254560:intron 50.0%
TTCACCTGAGCGGTGGTAAT+AGG + chr8_2:52659596-52659615 None:intergenic 50.0%
CACAATATTCACCTGAGCGG+TGG + chr8_2:52659603-52659622 None:intergenic 50.0%
TCTTGAAGGGAGAAGAGCTC+AGG - chr8_2:52659716-52659735 Msa1254560:intron 50.0%
GAAAGAGAGACAAGGAACCC+GGG + chr8_2:52656500-52656519 None:intergenic 50.0%
TCGCGCATGAAAGAGAGACA+AGG + chr8_2:52656508-52656527 None:intergenic 50.0%
! GGAGGTGTGTGTGAGTGATT+TGG - chr8_2:52656677-52656696 Msa1254560:three_prime_UTR 50.0%
GAAAAAGCTCACAGTGGGGA+AGG + chr8_2:52656831-52656850 None:intergenic 50.0%
GGTGAATAAGTGGGGAATCC+GGG - chr8_2:52657248-52657267 Msa1254560:CDS 50.0%
GTGAATAAGTGGGGAATCCG+GGG - chr8_2:52657249-52657268 Msa1254560:CDS 50.0%
GTTGCAATATGTAGGAGCCG+GGG + chr8_2:52657281-52657300 None:intergenic 50.0%
TTGAGCTATGCTCACAGGAC+TGG - chr8_2:52657312-52657331 Msa1254560:intron 50.0%
GCACTGTGAATCTGGGTTTG+TGG - chr8_2:52657738-52657757 Msa1254560:intron 50.0%
ACGTGCTGTCTCATTTCCAG+TGG - chr8_2:52658118-52658137 Msa1254560:intron 50.0%
!! GCTTCAACTCTGGAATCCAC+TGG + chr8_2:52658137-52658156 None:intergenic 50.0%
TTCACAGTTCGCCCCTTTAC+CGG + chr8_2:52658589-52658608 None:intergenic 50.0%
GTAAAGGGGCGAACTGTGAA+GGG - chr8_2:52658589-52658608 Msa1254560:intron 50.0%
AGAACTGCTTGTCATCCCGA+AGG + chr8_2:52659550-52659569 None:intergenic 50.0%
CAGTTCTTTGTGGACCATCC+TGG - chr8_2:52659563-52659582 Msa1254560:intron 50.0%
GTGGTAATAGGAACAGCACC+AGG + chr8_2:52659584-52659603 None:intergenic 50.0%
TGTTCCTATTACCACCGCTC+AGG - chr8_2:52659589-52659608 Msa1254560:intron 50.0%
TTCACCTGAGCGGTGGTAAT+AGG + chr8_2:52659596-52659615 None:intergenic 50.0%
CACAATATTCACCTGAGCGG+TGG + chr8_2:52659603-52659622 None:intergenic 50.0%
TCTTGAAGGGAGAAGAGCTC+AGG - chr8_2:52659716-52659735 Msa1254560:intron 50.0%
ACTGTTGGGGATGGAGCTGT+TGG - chr8_2:52656770-52656789 Msa1254560:three_prime_UTR 55.0%
!! CACAGTGGGGAAGGTATTGC+TGG + chr8_2:52656822-52656841 None:intergenic 55.0%
GGTAAAGGGGCGAACTGTGA+AGG - chr8_2:52658588-52658607 Msa1254560:intron 55.0%
ACTGTTGGGGATGGAGCTGT+TGG - chr8_2:52656770-52656789 Msa1254560:three_prime_UTR 55.0%
!! CACAGTGGGGAAGGTATTGC+TGG + chr8_2:52656822-52656841 None:intergenic 55.0%
GGTAAAGGGGCGAACTGTGA+AGG - chr8_2:52658588-52658607 Msa1254560:intron 55.0%
GGAATCCGGGGTTTGAACCC+CGG - chr8_2:52657261-52657280 Msa1254560:CDS 60.0%
CTGGGTTTGTGGGACACTGC+AGG - chr8_2:52657749-52657768 Msa1254560:intron 60.0%
GGAATCCGGGGTTTGAACCC+CGG - chr8_2:52657261-52657280 Msa1254560:CDS 60.0%
CTGGGTTTGTGGGACACTGC+AGG - chr8_2:52657749-52657768 Msa1254560:intron 60.0%
AGGAGCCGGGGTTCAAACCC+CGG + chr8_2:52657269-52657288 None:intergenic 65.0%
AGGAGCCGGGGTTCAAACCC+CGG + chr8_2:52657269-52657288 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 52656364 52660473 52656364 ID=Msa1254560;Name=Msa1254560
chr8_2 mRNA 52656364 52660473 52656364 ID=Msa1254560-mRNA-1;Parent=Msa1254560;Name=Msa1254560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=279|1|1|1|0.85|0.87|8|488|197
chr8_2 exon 52656364 52656953 52656364 ID=Msa1254560-mRNA-1:exon:16187;Parent=Msa1254560-mRNA-1
chr8_2 exon 52657048 52657113 52657048 ID=Msa1254560-mRNA-1:exon:16186;Parent=Msa1254560-mRNA-1
chr8_2 exon 52657227 52657291 52657227 ID=Msa1254560-mRNA-1:exon:16185;Parent=Msa1254560-mRNA-1
chr8_2 exon 52658636 52658699 52658636 ID=Msa1254560-mRNA-1:exon:16184;Parent=Msa1254560-mRNA-1
chr8_2 exon 52658876 52658985 52658876 ID=Msa1254560-mRNA-1:exon:16183;Parent=Msa1254560-mRNA-1
chr8_2 exon 52659067 52659154 52659067 ID=Msa1254560-mRNA-1:exon:16182;Parent=Msa1254560-mRNA-1
chr8_2 exon 52659999 52660183 52659999 ID=Msa1254560-mRNA-1:exon:16181;Parent=Msa1254560-mRNA-1
chr8_2 exon 52660281 52660473 52660281 ID=Msa1254560-mRNA-1:exon:16180;Parent=Msa1254560-mRNA-1
chr8_2 five_prime_UTR 52660281 52660473 52660281 ID=Msa1254560-mRNA-1:five_prime_utr;Parent=Msa1254560-mRNA-1
chr8_2 five_prime_UTR 52660098 52660183 52660098 ID=Msa1254560-mRNA-1:five_prime_utr;Parent=Msa1254560-mRNA-1
chr8_2 CDS 52659999 52660097 52659999 ID=Msa1254560-mRNA-1:cds;Parent=Msa1254560-mRNA-1
chr8_2 CDS 52659067 52659154 52659067 ID=Msa1254560-mRNA-1:cds;Parent=Msa1254560-mRNA-1
chr8_2 CDS 52658876 52658985 52658876 ID=Msa1254560-mRNA-1:cds;Parent=Msa1254560-mRNA-1
chr8_2 CDS 52658636 52658699 52658636 ID=Msa1254560-mRNA-1:cds;Parent=Msa1254560-mRNA-1
chr8_2 CDS 52657227 52657291 52657227 ID=Msa1254560-mRNA-1:cds;Parent=Msa1254560-mRNA-1
chr8_2 CDS 52657048 52657113 52657048 ID=Msa1254560-mRNA-1:cds;Parent=Msa1254560-mRNA-1
chr8_2 CDS 52656852 52656953 52656852 ID=Msa1254560-mRNA-1:cds;Parent=Msa1254560-mRNA-1
chr8_2 three_prime_UTR 52656364 52656851 52656364 ID=Msa1254560-mRNA-1:three_prime_utr;Parent=Msa1254560-mRNA-1
Gene Sequence

>Msa1254560

ATGAGCGCTTCTAGGTTCATCAAGTGTGTTACTGTTGGGGATGGAGCTGTTGGTAAAACTTGTTTGCTTATTTCATACACCAGCAATACCTTCCCCACTGATTATGTGCCAACTGTCTTCGACAATTTCAGTGCAAATGTGGTTGTGAATGGAAGCACTGTGAATCTGGGTTTGTGGGACACTGCAGGACAAGAGGATTATAACAGATTAAGACCTTTGAGTTATCGTGGTGCTGATGTTTTCATTCTCGCTTTCTCACTCATAAGCAAGGCCAGTTATGAAAATGTTTCTAAAAAGTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTTCCCATTATTCTGGTTGGCACAAAGCTTGACCTTCGGGATGACAAGCAGTTCTTTGTGGACCATCCTGGTGCTGTTCCTATTACCACCGCTCAGGGAGAAGAGCTCAGGAAGCTGATCAATGCACCTGCTTATATTGAATGCAGTTCAAAATCACAGCAGAACGTGAAAGCAGTCTTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGTAAAGCTCAAAAGGCCTGTTCGATATTGTGA
Protein sequence

>Msa1254560

MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL*