AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0464120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464120 MtrunA17_Chr3g0114751 97.273 220 3 1 1 220 1 217 2.81e-159 439
Msa0464120 MtrunA17_Chr5g0423921 77.368 190 38 2 32 220 27 212 3.29e-104 299
Msa0464120 MtrunA17_Chr8g0380801 66.981 212 64 4 12 220 3 211 1.10e-93 273
Msa0464120 MtrunA17_Chr2g0277981 62.679 209 70 3 13 220 5 206 4.94e-92 268
Msa0464120 MtrunA17_Chr4g0042721 44.330 194 103 3 31 220 24 216 7.30e-58 182
Msa0464120 MtrunA17_Chr6g0453521 44.809 183 95 3 43 220 31 212 2.72e-55 175
Msa0464120 MtrunA17_Chr8g0380821 73.874 111 27 1 112 220 2 112 1.38e-53 167
Msa0464120 MtrunA17_Chr5g0417891 34.081 223 135 5 4 220 3 219 2.79e-43 145
Msa0464120 MtrunA17_Chr7g0217911 41.667 144 83 1 78 220 5 148 1.07e-38 130
Msa0464120 MtrunA17_Chr5g0417931 38.798 183 104 5 44 220 43 223 1.98e-33 119
Msa0464120 MtrunA17_Chr5g0417901 33.520 179 113 3 44 220 40 214 1.60e-28 106
Msa0464120 MtrunA17_Chr1g0204631 28.472 144 100 2 73 216 66 206 1.14e-14 70.1
Msa0464120 MtrunA17_Chr7g0260361 28.472 144 100 2 73 216 12 152 5.66e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464120 AT1G09580.1 62.927 205 72 2 18 220 15 217 1.89e-96 280
Msa0464120 AT1G57620.1 57.658 222 82 4 1 220 1 212 1.53e-90 265
Msa0464120 AT1G21900.1 62.981 208 73 3 16 220 10 216 4.80e-90 264
Msa0464120 AT3G10780.1 53.030 198 87 3 28 220 21 217 4.47e-67 206
Msa0464120 AT1G26690.1 40.385 208 115 4 17 220 12 214 3.59e-54 173
Msa0464120 AT1G14010.1 39.713 209 119 4 16 220 7 212 5.26e-52 167
Msa0464120 AT2G03290.1 41.327 196 111 2 29 220 18 213 8.19e-52 167
Msa0464120 AT1G69460.1 41.117 197 109 4 29 220 20 214 1.97e-51 166
Msa0464120 AT3G29070.1 38.860 193 113 3 32 220 34 225 3.31e-45 150
Msa0464120 AT2G03040.1 38.926 149 87 2 29 173 18 166 3.93e-34 120
Msa0464120 AT3G22845.1 26.776 183 129 3 36 216 28 207 1.40e-14 70.5

Find 89 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACATATATTCTGAATTT+AGG 0.195085 3_3:+63733109 Msa0464120:three_prime_UTR
TTGGGACTCTGTTGCTAAAA+AGG 0.253132 3_3:+63732076 Msa0464120:CDS
ATCGGCAACAACATAGTAAT+TGG 0.296460 3_3:-63730799 None:intergenic
GGTTGACTGTGGAATAAAAT+AGG 0.300784 3_3:-63730597 None:intergenic
GTCTCTTGGCGTATGCGTTT+CGG 0.305564 3_3:+63732893 Msa0464120:CDS
GTAGCTATGTGGCATGCTTT+TGG 0.326986 3_3:+63731985 Msa0464120:CDS
AGCAACAGAGTCCCAATCTT+TGG 0.327971 3_3:-63732069 None:intergenic
ATCTGTTATATTTAAAGAAC+AGG 0.333875 3_3:+63732278 Msa0464120:CDS
ATTAGTCTTGAATGGAAAAC+TGG 0.334614 3_3:+63732038 Msa0464120:CDS
ACAATTCGTGTTCCTGAACT+TGG 0.360761 3_3:-63730645 None:intergenic
CTGGAATCTCTGCCAAAGAT+TGG 0.361290 3_3:+63732057 Msa0464120:CDS
TGGTTAAGTATCCCCAGTTC+AGG 0.366565 3_3:+63730729 Msa0464120:CDS
GTTCTTCAATTAGTCTTGAA+TGG 0.366713 3_3:+63732030 Msa0464120:CDS
CTAAAACGACAACATGTGTT+TGG 0.367209 3_3:-63730776 None:intergenic
CACCGAGCCTCCCCAGGGTA+TGG 0.369293 3_3:-63730462 None:intergenic
CATGTTACTTATAGTAGAAT+AGG 0.377565 3_3:+63733190 Msa0464120:three_prime_UTR
AACCAAATGGCCTTGGTTTG+AGG 0.382119 3_3:-63730711 None:intergenic
TTGTACTCTTTCTTTCTCTC+GGG 0.388015 3_3:+63730542 Msa0464120:five_prime_UTR
TTTGTACTCTTTCTTTCTCT+CGG 0.389059 3_3:+63730541 Msa0464120:five_prime_UTR
ACCAAATGGCCTTGGTTTGA+GGG 0.400461 3_3:-63730710 None:intergenic
AAAGGCTTCAACCCAAGTTC+AGG 0.405800 3_3:+63730633 Msa0464120:CDS
TCCCTCAAACCAAGGCCATT+TGG 0.405823 3_3:+63730709 Msa0464120:CDS
ATCATTTGCATTAAACATGC+TGG 0.406313 3_3:-63733228 None:intergenic
TTGTGAAGATTATTTCCATA+TGG 0.419312 3_3:-63731912 None:intergenic
TGTATCTGAGACGCTACTTT+CGG 0.424544 3_3:+63732934 Msa0464120:CDS
CCACAGTCAACCATCGGTTA+TGG 0.438644 3_3:+63730608 Msa0464120:exon
GATACTTAACCAAATGGCCT+TGG 0.444311 3_3:-63730718 None:intergenic
CAACCATCGGTTATGGCAAA+AGG 0.447602 3_3:+63730615 Msa0464120:exon
TGGAATCTCTGCCAAAGATT+GGG 0.449888 3_3:+63732058 Msa0464120:CDS
GCCCATACCCTGGGGAGGCT+CGG 0.454555 3_3:+63730460 Msa0464120:five_prime_UTR
CACGCACTTAGTTCCTGAAC+TGG 0.458031 3_3:-63730742 None:intergenic
AGCCCTGGTCTTTGTACTTG+TGG 0.458914 3_3:+63730515 Msa0464120:five_prime_UTR
TGTTGTTGCCGATAATATCC+AGG 0.467878 3_3:+63730809 Msa0464120:CDS
CTATAGCACCGAGCCTCCCC+AGG 0.474490 3_3:-63730468 None:intergenic
AAAGACCAGGGCTTGACCCT+GGG 0.476675 3_3:-63730505 None:intergenic
CTTGAGCTAAGGAAACTTGA+TGG 0.478866 3_3:+63732232 Msa0464120:CDS
ACCGAGCCTCCCCAGGGTAT+GGG 0.483666 3_3:-63730461 None:intergenic
AGGAACTAAGTGCGTGTCGC+AGG 0.493989 3_3:+63730749 Msa0464120:CDS
CCCCAGGTGACATCTCCATA+TGG 0.495395 3_3:+63731897 Msa0464120:intron
CATACCTTGGCAGAAATAGT+AGG 0.498008 3_3:-63730843 None:intergenic
TTAAATATAACAGATTCTCA+TGG 0.503411 3_3:-63732270 None:intergenic
GAAGTAAGCGAAGCAACAAA+TGG 0.515284 3_3:+63732846 Msa0464120:CDS
TCAATTTGCATTTACAACTA+CGG 0.519360 3_3:+63731956 Msa0464120:CDS
TAGTAGGAAGTGGGTGACCC+TGG 0.521407 3_3:-63730827 None:intergenic
GATTACCTCTACAAGGGGTA+TGG 0.525321 3_3:+63733081 Msa0464120:three_prime_UTR
TACCTCTACAAGGGGTATGG+TGG 0.526535 3_3:+63733084 Msa0464120:three_prime_UTR
TGGGTGACCCTGGATATTAT+CGG 0.530206 3_3:-63730817 None:intergenic
CAATTCGTGTTCCTGAACTT+GGG 0.533317 3_3:-63730644 None:intergenic
CAAAGACCAGGGCTTGACCC+TGG 0.535927 3_3:-63730506 None:intergenic
TTGGCAGAAATAGTAGGAAG+TGG 0.539689 3_3:-63730837 None:intergenic
ACGCACTTAGTTCCTGAACT+GGG 0.540090 3_3:-63730741 None:intergenic
AAAACTTATAGAAAACAAGT+TGG 0.540899 3_3:-63733004 None:intergenic
ACTGGGGATACTTAACCAAA+TGG 0.541125 3_3:-63730724 None:intergenic
TGGTTCAGTATAATGTCTCT+TGG 0.541189 3_3:+63732879 Msa0464120:CDS
AGGGTGTTGAACTTGAGCTA+AGG 0.542132 3_3:+63732221 Msa0464120:intron
AGTAGAATAGGAAAAGCAAT+GGG 0.550580 3_3:+63733202 Msa0464120:three_prime_UTR
TTGAGGCCCATACCCTGGGG+AGG 0.553741 3_3:+63730455 Msa0464120:five_prime_UTR
ATATAACAGATTCTCATGGA+TGG 0.555960 3_3:-63732266 None:intergenic
TTTATTCCACAGTCAACCAT+CGG 0.564107 3_3:+63730602 Msa0464120:five_prime_UTR
GTTGGTGGATTACCTCTACA+AGG 0.568563 3_3:+63733074 Msa0464120:three_prime_UTR
TTGTAAATGCAAATTGACCT+TGG 0.569513 3_3:-63731950 None:intergenic
CACCCGCACGGTTTATTGGG+GGG 0.571941 3_3:+63730411 None:intergenic
AACAATGAAAATGTTAGCCA+AGG 0.574278 3_3:+63731933 Msa0464120:CDS
ACCTCTACAAGGGGTATGGT+GGG 0.579054 3_3:+63733085 Msa0464120:three_prime_UTR
TAGTAGAATAGGAAAAGCAA+TGG 0.591569 3_3:+63733201 Msa0464120:three_prime_UTR
ACTTCCTACTATTTCTGCCA+AGG 0.592421 3_3:+63730839 Msa0464120:CDS
TGTACTCTTTCTTTCTCTCG+GGG 0.592451 3_3:+63730543 Msa0464120:five_prime_UTR
AAGACCAGGGCTTGACCCTG+GGG 0.602254 3_3:-63730504 None:intergenic
ACACCCGCACGGTTTATTGG+GGG 0.602854 3_3:+63730410 None:intergenic
GACCAGGGCTTGACCCTGGG+GGG 0.605972 3_3:-63730502 None:intergenic
ACACCACAAGTACAAAGACC+AGG 0.608145 3_3:-63730518 None:intergenic
TATTAATCTCCCTCAAACCA+AGG 0.612415 3_3:+63730701 Msa0464120:CDS
GCATTTACAACTACGGAGAG+TGG 0.623113 3_3:+63731963 Msa0464120:CDS
TACGGAGAGTGGTAGCTATG+TGG 0.633734 3_3:+63731974 Msa0464120:CDS
CAGATGTTCAATTAACCACA+TGG 0.633972 3_3:-63733149 None:intergenic
TAGGATTGTCGAAAACAAAG+TGG 0.635214 3_3:-63730578 None:intergenic
TTGAGGGAGATTAATAAGCG+AGG 0.637007 3_3:-63730694 None:intergenic
TGGCAGAAATAGTAGGAAGT+GGG 0.638364 3_3:-63730836 None:intergenic
TCCCACCATACCCCTTGTAG+AGG 0.640141 3_3:-63733086 None:intergenic
GTTGTTGCCGATAATATCCA+GGG 0.640526 3_3:+63730810 Msa0464120:CDS
CAACAAATGGCAGAGTTGCG+TGG 0.644187 3_3:+63732859 Msa0464120:CDS
AGACCAGGGCTTGACCCTGG+GGG 0.651625 3_3:-63730503 None:intergenic
ATTCTACTATAAGTAACATG+AGG 0.660930 3_3:-63733187 None:intergenic
TATAGCACCGAGCCTCCCCA+GGG 0.672383 3_3:-63730467 None:intergenic
CGCACTTAGTTCCTGAACTG+GGG 0.674873 3_3:-63730740 None:intergenic
TTGGTGGATTACCTCTACAA+GGG 0.675678 3_3:+63733075 Msa0464120:three_prime_UTR
CACCACAAGTACAAAGACCA+GGG 0.681137 3_3:-63730517 None:intergenic
TGGTGGATTACCTCTACAAG+GGG 0.690786 3_3:+63733076 Msa0464120:three_prime_UTR
CCATAACCGATGGTTGACTG+TGG 0.695847 3_3:-63730608 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGCTTTATTATTTTTTCT+TGG + chr3_3:63730862-63730881 Msa0464120:intron 15.0%
!!! AAAAGTTCAAAACAATTTTA+TGG - chr3_3:63732440-63732459 None:intergenic 15.0%
!!! TTTTCATAAACTATATTAGA+TGG - chr3_3:63732470-63732489 None:intergenic 15.0%
!! AAATTTATTCAAAGAAAGTT+AGG + chr3_3:63732672-63732691 Msa0464120:intron 15.0%
!! AATTTATTCAAAGAAAGTTA+GGG + chr3_3:63732673-63732692 Msa0464120:intron 15.0%
!!! AGGCTATAATTATTTTTTTG+AGG + chr3_3:63730438-63730457 Msa0464120:five_prime_UTR 20.0%
!! AAAAATAATAAAGCATACCT+TGG - chr3_3:63730859-63730878 None:intergenic 20.0%
!!! TTTGATCTTTATGCTTTATT+TGG + chr3_3:63730922-63730941 Msa0464120:intron 20.0%
!!! ATTTAAAGTTTCTTCAACTT+AGG + chr3_3:63730971-63730990 Msa0464120:intron 20.0%
!!! GGATTATAAATTTGTTTATG+AGG + chr3_3:63730992-63731011 Msa0464120:intron 20.0%
!! AATTCATATGAGTTAAACTA+AGG + chr3_3:63731338-63731357 Msa0464120:intron 20.0%
!! AAAAAAAACTACTACATTAG+TGG - chr3_3:63731387-63731406 None:intergenic 20.0%
!! TAACTCAACTAATACATTTA+TGG + chr3_3:63731630-63731649 Msa0464120:intron 20.0%
!!! TAATACATTTATGGTTTGTT+TGG + chr3_3:63731639-63731658 Msa0464120:intron 20.0%
!!! AATACATTTATGGTTTGTTT+GGG + chr3_3:63731640-63731659 Msa0464120:intron 20.0%
!! TTAAATATAACAGATTCTCA+TGG - chr3_3:63732273-63732292 None:intergenic 20.0%
!! ATCTGTTATATTTAAAGAAC+AGG + chr3_3:63732278-63732297 Msa0464120:CDS 20.0%
!! CTATATCAAAAGATGAAATA+AGG - chr3_3:63732521-63732540 None:intergenic 20.0%
!! AATTAAGATGTTTATCCAAA+TGG + chr3_3:63732594-63732613 Msa0464120:intron 20.0%
!! ATTAAGATGTTTATCCAAAT+GGG + chr3_3:63732595-63732614 Msa0464120:intron 20.0%
!!! TGAGATCTTTTTATTAAGTT+GGG + chr3_3:63732643-63732662 Msa0464120:intron 20.0%
!!! TGAATTATCTCAGTTATTTT+GGG - chr3_3:63732761-63732780 None:intergenic 20.0%
!!! ATGAATTATCTCAGTTATTT+TGG - chr3_3:63732762-63732781 None:intergenic 20.0%
!!! ATTTTTTTTGCACATTGTAT+AGG + chr3_3:63732808-63732827 Msa0464120:intron 20.0%
!!! TTTTTTTTGCACATTGTATA+GGG + chr3_3:63732809-63732828 Msa0464120:intron 20.0%
!! AAAACTTATAGAAAACAAGT+TGG - chr3_3:63733007-63733026 None:intergenic 20.0%
!!! AACTTGTTTTCTATAAGTTT+TGG + chr3_3:63733006-63733025 Msa0464120:three_prime_UTR 20.0%
!!! TAGTATTTTTCATGTATCAT+TGG + chr3_3:63733049-63733068 Msa0464120:three_prime_UTR 20.0%
!!! AGTATTTTTCATGTATCATT+GGG + chr3_3:63733050-63733069 Msa0464120:three_prime_UTR 20.0%
!! GTTACATATATTCTGAATTT+AGG + chr3_3:63733109-63733128 Msa0464120:three_prime_UTR 20.0%
!! AATTTGTTTATGAGGCTAAT+AGG + chr3_3:63731000-63731019 Msa0464120:intron 25.0%
! ATTTGTTTATGAGGCTAATA+GGG + chr3_3:63731001-63731020 Msa0464120:intron 25.0%
! ATTCAACGTCAATACAAATT+TGG - chr3_3:63731039-63731058 None:intergenic 25.0%
! TTGCAAAAGTTGTCTAAATT+TGG - chr3_3:63731196-63731215 None:intergenic 25.0%
!!! TTTTGCAACAACTTTTTAAG+TGG + chr3_3:63731208-63731227 Msa0464120:intron 25.0%
! AATATGTGGTTAATTACATC+CGG + chr3_3:63731244-63731263 Msa0464120:intron 25.0%
! GGATGGTAAATAGATATATT+AGG + chr3_3:63731268-63731287 Msa0464120:intron 25.0%
! ACAACACATGTAAGAAAATT+CGG - chr3_3:63731509-63731528 None:intergenic 25.0%
! TTGTGAAGATTATTTCCATA+TGG - chr3_3:63731915-63731934 None:intergenic 25.0%
! TCAATTTGCATTTACAACTA+CGG + chr3_3:63731956-63731975 Msa0464120:CDS 25.0%
! TTGCCTTTGTAATATCTATA+TGG + chr3_3:63732141-63732160 Msa0464120:intron 25.0%
! TGCCTTTGTAATATCTATAT+GGG + chr3_3:63732142-63732161 Msa0464120:intron 25.0%
! ATCCCATATAGATATTACAA+AGG - chr3_3:63732147-63732166 None:intergenic 25.0%
!! GTTTAATGACATAATCGTTT+TGG + chr3_3:63732187-63732206 Msa0464120:intron 25.0%
!!! GATGTTTGATTTCAGTTTTA+GGG + chr3_3:63732323-63732342 Msa0464120:intron 25.0%
! GAAAATAGCTTATAGCTAAT+AGG + chr3_3:63732485-63732504 Msa0464120:intron 25.0%
! TTAAGATGTTTATCCAAATG+GGG + chr3_3:63732596-63732615 Msa0464120:intron 25.0%
!! CTGAGATCTTTTTATTAAGT+TGG + chr3_3:63732642-63732661 Msa0464120:intron 25.0%
!! ATTTTACTTTCTTATAGCAC+TGG + chr3_3:63732975-63732994 Msa0464120:three_prime_UTR 25.0%
!! GTATTTTTCATGTATCATTG+GGG + chr3_3:63733051-63733070 Msa0464120:three_prime_UTR 25.0%
!! TATTTTTCATGTATCATTGG+GGG + chr3_3:63733052-63733071 Msa0464120:three_prime_UTR 25.0%
!!! TTTTGTTACTTTATTCCATG+TGG + chr3_3:63733134-63733153 Msa0464120:three_prime_UTR 25.0%
! ATTCTACTATAAGTAACATG+AGG - chr3_3:63733190-63733209 None:intergenic 25.0%
!! CATGTTACTTATAGTAGAAT+AGG + chr3_3:63733190-63733209 Msa0464120:three_prime_UTR 25.0%
TTTGTACTCTTTCTTTCTCT+CGG + chr3_3:63730541-63730560 Msa0464120:five_prime_UTR 30.0%
AATTTGGTCCTAAATTTGCA+GGG - chr3_3:63731095-63731114 None:intergenic 30.0%
AAATTTGGTCCTAAATTTGC+AGG - chr3_3:63731096-63731115 None:intergenic 30.0%
! GCAAATTTAGGACCAAATTT+AGG + chr3_3:63731096-63731115 Msa0464120:intron 30.0%
CCTAAATTTGGTCCTAAATT+TGG - chr3_3:63731099-63731118 None:intergenic 30.0%
! CCAAATTTAGGACCAAATTT+AGG + chr3_3:63731108-63731127 Msa0464120:intron 30.0%
TGTGAATTTGGTCCTAAATT+TGG - chr3_3:63731123-63731142 None:intergenic 30.0%
AATTTGGTTATCCTCATTGT+TGG - chr3_3:63731180-63731199 None:intergenic 30.0%
TATATCTATTTACCATCCAC+CGG - chr3_3:63731266-63731285 None:intergenic 30.0%
CAACACATGTAAGAAAATTC+GGG - chr3_3:63731508-63731527 None:intergenic 30.0%
!! ATCATTTTTCAGATACGTGT+CGG - chr3_3:63731565-63731584 None:intergenic 30.0%
AAAATGATACACCTAATCAC+AGG + chr3_3:63731577-63731596 Msa0464120:intron 30.0%
AACAATGAAAATGTTAGCCA+AGG + chr3_3:63731933-63731952 Msa0464120:CDS 30.0%
TTGTAAATGCAAATTGACCT+TGG - chr3_3:63731953-63731972 None:intergenic 30.0%
ATGAATAGCAAAAATCTAGC+AGG + chr3_3:63732008-63732027 Msa0464120:CDS 30.0%
!! GTTCTTCAATTAGTCTTGAA+TGG + chr3_3:63732030-63732049 Msa0464120:CDS 30.0%
!! ATTAGTCTTGAATGGAAAAC+TGG + chr3_3:63732038-63732057 Msa0464120:CDS 30.0%
TGCTAAAAAGGAAAAGATAG+AGG + chr3_3:63732088-63732107 Msa0464120:CDS 30.0%
!!! GACATAATCGTTTTGGAAAA+TGG + chr3_3:63732194-63732213 Msa0464120:intron 30.0%
!!! TCGTTTTGGAAAATGGTTTA+AGG + chr3_3:63732201-63732220 Msa0464120:intron 30.0%
!!! CGTTTTGGAAAATGGTTTAA+GGG + chr3_3:63732202-63732221 Msa0464120:intron 30.0%
ATATAACAGATTCTCATGGA+TGG - chr3_3:63732269-63732288 None:intergenic 30.0%
!! CGATGTTTGATTTCAGTTTT+AGG + chr3_3:63732322-63732341 Msa0464120:intron 30.0%
GTGAGCTTATCTACTAATAT+AGG + chr3_3:63732365-63732384 Msa0464120:intron 30.0%
ACAATTGCTTACGATATAAG+CGG + chr3_3:63732569-63732588 Msa0464120:intron 30.0%
TAGTAGAATAGGAAAAGCAA+TGG + chr3_3:63733201-63733220 Msa0464120:three_prime_UTR 30.0%
AGTAGAATAGGAAAAGCAAT+GGG + chr3_3:63733202-63733221 Msa0464120:three_prime_UTR 30.0%
TTGTACTCTTTCTTTCTCTC+GGG + chr3_3:63730542-63730561 Msa0464120:five_prime_UTR 35.0%
TAGGATTGTCGAAAACAAAG+TGG - chr3_3:63730581-63730600 None:intergenic 35.0%
GGTTGACTGTGGAATAAAAT+AGG - chr3_3:63730600-63730619 None:intergenic 35.0%
TTTATTCCACAGTCAACCAT+CGG + chr3_3:63730602-63730621 Msa0464120:five_prime_UTR 35.0%
TATTAATCTCCCTCAAACCA+AGG + chr3_3:63730701-63730720 Msa0464120:CDS 35.0%
CTAAAACGACAACATGTGTT+TGG - chr3_3:63730779-63730798 None:intergenic 35.0%
ATCGGCAACAACATAGTAAT+TGG - chr3_3:63730802-63730821 None:intergenic 35.0%
TGAACTGGTCAATGTGAATT+TGG - chr3_3:63731135-63731154 None:intergenic 35.0%
TCACATTGACCAGTTCAAAT+AGG + chr3_3:63731138-63731157 Msa0464120:intron 35.0%
GTTGACGCAGTTTAAATATG+TGG + chr3_3:63731230-63731249 Msa0464120:intron 35.0%
ACTCATATGAATTTCAGTCG+TGG - chr3_3:63731331-63731350 None:intergenic 35.0%
TGTGTTGTATGTGTATCGTA+TGG + chr3_3:63731521-63731540 Msa0464120:intron 35.0%
GTGTTGTATGTGTATCGTAT+GGG + chr3_3:63731522-63731541 Msa0464120:intron 35.0%
AATTTGACACTCCTGTGATT+AGG - chr3_3:63731591-63731610 None:intergenic 35.0%
!! ACATTTATGGTTTGTTTGGG+AGG + chr3_3:63731643-63731662 Msa0464120:intron 35.0%
!! CATTTATGGTTTGTTTGGGA+GGG + chr3_3:63731644-63731663 Msa0464120:intron 35.0%
!!! GGAAATTCATGAGTTTTGGA+GGG - chr3_3:63731835-63731854 None:intergenic 35.0%
TATGTGTCAACGATGATGAT+GGG + chr3_3:63732714-63732733 Msa0464120:intron 35.0%
TGGTTCAGTATAATGTCTCT+TGG + chr3_3:63732879-63732898 Msa0464120:CDS 35.0%
CAGATGTTCAATTAACCACA+TGG - chr3_3:63733152-63733171 None:intergenic 35.0%
TGTACTCTTTCTTTCTCTCG+GGG + chr3_3:63730543-63730562 Msa0464120:five_prime_UTR 40.0%
CAATTCGTGTTCCTGAACTT+GGG - chr3_3:63730647-63730666 None:intergenic 40.0%
ACAATTCGTGTTCCTGAACT+TGG - chr3_3:63730648-63730667 None:intergenic 40.0%
TTGAGGGAGATTAATAAGCG+AGG - chr3_3:63730697-63730716 None:intergenic 40.0%
GATACTTAACCAAATGGCCT+TGG - chr3_3:63730721-63730740 None:intergenic 40.0%
ACTGGGGATACTTAACCAAA+TGG - chr3_3:63730727-63730746 None:intergenic 40.0%
TGTTGTTGCCGATAATATCC+AGG + chr3_3:63730809-63730828 Msa0464120:CDS 40.0%
GTTGTTGCCGATAATATCCA+GGG + chr3_3:63730810-63730829 Msa0464120:CDS 40.0%
TGGCAGAAATAGTAGGAAGT+GGG - chr3_3:63730839-63730858 None:intergenic 40.0%
TTGGCAGAAATAGTAGGAAG+TGG - chr3_3:63730840-63730859 None:intergenic 40.0%
!! ACTTCCTACTATTTCTGCCA+AGG + chr3_3:63730839-63730858 Msa0464120:CDS 40.0%
CATACCTTGGCAGAAATAGT+AGG - chr3_3:63730846-63730865 None:intergenic 40.0%
CCAAGCTTTCCTATTTGAAC+TGG - chr3_3:63731150-63731169 None:intergenic 40.0%
CCAGTTCAAATAGGAAAGCT+TGG + chr3_3:63731147-63731166 Msa0464120:intron 40.0%
TTGGATACAGACCAACAATG+AGG + chr3_3:63731166-63731185 Msa0464120:intron 40.0%
ATGTGGTTAATTACATCCGG+TGG + chr3_3:63731247-63731266 Msa0464120:intron 40.0%
CGTGGTTAATGAAGTAACGT+TGG - chr3_3:63731313-63731332 None:intergenic 40.0%
AGGCTCATCTACGGTAAAAT+TGG - chr3_3:63731419-63731438 None:intergenic 40.0%
ACACTCTTCAAACACAGCAT+AGG - chr3_3:63731439-63731458 None:intergenic 40.0%
TATGTGTATCGTATGGGTGT+CGG + chr3_3:63731528-63731547 Msa0464120:intron 40.0%
!!! TCAGATACGTGTCGGTTTTT+GGG - chr3_3:63731557-63731576 None:intergenic 40.0%
!!! TTCAGATACGTGTCGGTTTT+TGG - chr3_3:63731558-63731577 None:intergenic 40.0%
! TTTGTTTGGGAGGGAGATTT+TGG + chr3_3:63731653-63731672 Msa0464120:intron 40.0%
!!! TTCATGAGTTTTGGAGGGAT+AGG - chr3_3:63731830-63731849 None:intergenic 40.0%
!! GGGAAATTCATGAGTTTTGG+AGG - chr3_3:63731836-63731855 None:intergenic 40.0%
! GGAGGGAAATTCATGAGTTT+TGG - chr3_3:63731839-63731858 None:intergenic 40.0%
TGGAATCTCTGCCAAAGATT+GGG + chr3_3:63732058-63732077 Msa0464120:CDS 40.0%
TTGGGACTCTGTTGCTAAAA+AGG + chr3_3:63732076-63732095 Msa0464120:CDS 40.0%
CTTGAGCTAAGGAAACTTGA+TGG + chr3_3:63732232-63732251 Msa0464120:CDS 40.0%
GTTTATCCAAATGGGGATCA+TGG + chr3_3:63732603-63732622 Msa0464120:intron 40.0%
TTACATCCATGATCCCCATT+TGG - chr3_3:63732612-63732631 None:intergenic 40.0%
CTATGTGTCAACGATGATGA+TGG + chr3_3:63732713-63732732 Msa0464120:intron 40.0%
GAAGTAAGCGAAGCAACAAA+TGG + chr3_3:63732846-63732865 Msa0464120:CDS 40.0%
! TGTATCTGAGACGCTACTTT+CGG + chr3_3:63732934-63732953 Msa0464120:CDS 40.0%
TTTCATGTATCATTGGGGGT+TGG + chr3_3:63733056-63733075 Msa0464120:three_prime_UTR 40.0%
!! TTGGTGGATTACCTCTACAA+GGG + chr3_3:63733075-63733094 Msa0464120:three_prime_UTR 40.0%
!!! TTTTTTTGAGGCCCATACCC+TGG + chr3_3:63730450-63730469 Msa0464120:five_prime_UTR 45.0%
!!! TTTTTTGAGGCCCATACCCT+GGG + chr3_3:63730451-63730470 Msa0464120:five_prime_UTR 45.0%
CACCACAAGTACAAAGACCA+GGG - chr3_3:63730520-63730539 None:intergenic 45.0%
ACACCACAAGTACAAAGACC+AGG - chr3_3:63730521-63730540 None:intergenic 45.0%
! CAACCATCGGTTATGGCAAA+AGG + chr3_3:63730615-63730634 Msa0464120:exon 45.0%
! AAGCCTTTTGCCATAACCGA+TGG - chr3_3:63730621-63730640 None:intergenic 45.0%
AAAGGCTTCAACCCAAGTTC+AGG + chr3_3:63730633-63730652 Msa0464120:CDS 45.0%
! ACCAAATGGCCTTGGTTTGA+GGG - chr3_3:63730713-63730732 None:intergenic 45.0%
! AACCAAATGGCCTTGGTTTG+AGG - chr3_3:63730714-63730733 None:intergenic 45.0%
TGGTTAAGTATCCCCAGTTC+AGG + chr3_3:63730729-63730748 Msa0464120:CDS 45.0%
ACGCACTTAGTTCCTGAACT+GGG - chr3_3:63730744-63730763 None:intergenic 45.0%
TGGGTGACCCTGGATATTAT+CGG - chr3_3:63730820-63730839 None:intergenic 45.0%
AAATTTGCAGGGCTTGTGGA+TGG - chr3_3:63731084-63731103 None:intergenic 45.0%
TCCACAAGCCCTGCAAATTT+AGG + chr3_3:63731084-63731103 Msa0464120:intron 45.0%
TCCTAAATTTGCAGGGCTTG+TGG - chr3_3:63731088-63731107 None:intergenic 45.0%
GGTTAATTACATCCGGTGGA+TGG + chr3_3:63731251-63731270 Msa0464120:intron 45.0%
TAAACTAAGGTCCTGCACGA+TGG + chr3_3:63731351-63731370 Msa0464120:intron 45.0%
ACACAGCATAGGCTCATCTA+CGG - chr3_3:63731428-63731447 None:intergenic 45.0%
TCCATATGGAGATGTCACCT+GGG - chr3_3:63731901-63731920 None:intergenic 45.0%
TTCCATATGGAGATGTCACC+TGG - chr3_3:63731902-63731921 None:intergenic 45.0%
GCATTTACAACTACGGAGAG+TGG + chr3_3:63731963-63731982 Msa0464120:CDS 45.0%
! GTAGCTATGTGGCATGCTTT+TGG + chr3_3:63731985-63732004 Msa0464120:CDS 45.0%
CTGGAATCTCTGCCAAAGAT+TGG + chr3_3:63732057-63732076 Msa0464120:CDS 45.0%
AGCAACAGAGTCCCAATCTT+TGG - chr3_3:63732072-63732091 None:intergenic 45.0%
!! AGGGTGTTGAACTTGAGCTA+AGG + chr3_3:63732221-63732240 Msa0464120:intron 45.0%
!! TGTCAACGATGATGATGGGT+GGG + chr3_3:63732718-63732737 Msa0464120:intron 45.0%
!! GTTGGTGGATTACCTCTACA+AGG + chr3_3:63733074-63733093 Msa0464120:three_prime_UTR 45.0%
!! TGGTGGATTACCTCTACAAG+GGG + chr3_3:63733076-63733095 Msa0464120:three_prime_UTR 45.0%
GATTACCTCTACAAGGGGTA+TGG + chr3_3:63733081-63733100 Msa0464120:three_prime_UTR 45.0%
!!! TTTTTGAGGCCCATACCCTG+GGG + chr3_3:63730452-63730471 Msa0464120:five_prime_UTR 50.0%
! AGCCCTGGTCTTTGTACTTG+TGG + chr3_3:63730515-63730534 Msa0464120:five_prime_UTR 50.0%
CCATAACCGATGGTTGACTG+TGG - chr3_3:63730611-63730630 None:intergenic 50.0%
! CCACAGTCAACCATCGGTTA+TGG + chr3_3:63730608-63730627 Msa0464120:exon 50.0%
TCCCTCAAACCAAGGCCATT+TGG + chr3_3:63730709-63730728 Msa0464120:CDS 50.0%
CGCACTTAGTTCCTGAACTG+GGG - chr3_3:63730743-63730762 None:intergenic 50.0%
CACGCACTTAGTTCCTGAAC+TGG - chr3_3:63730745-63730764 None:intergenic 50.0%
!! TTGGGAGGGAGATTTTGGAG+AGG + chr3_3:63731658-63731677 Msa0464120:intron 50.0%
! ATCACACCGAGGGTTTGCTT+GGG - chr3_3:63731860-63731879 None:intergenic 50.0%
! TATCACACCGAGGGTTTGCT+TGG - chr3_3:63731861-63731880 None:intergenic 50.0%
GCAGTCATGTATCACACCGA+GGG - chr3_3:63731870-63731889 None:intergenic 50.0%
AGATGTCACCTGGGGCAAAA+AGG - chr3_3:63731892-63731911 None:intergenic 50.0%
CCATATGGAGATGTCACCTG+GGG - chr3_3:63731900-63731919 None:intergenic 50.0%
TACGGAGAGTGGTAGCTATG+TGG + chr3_3:63731974-63731993 Msa0464120:CDS 50.0%
!! GTGTCAACGATGATGATGGG+TGG + chr3_3:63732717-63732736 Msa0464120:intron 50.0%
CAACAAATGGCAGAGTTGCG+TGG + chr3_3:63732859-63732878 Msa0464120:CDS 50.0%
GTCTCTTGGCGTATGCGTTT+CGG + chr3_3:63732893-63732912 Msa0464120:CDS 50.0%
CATGTATCATTGGGGGTTGG+TGG + chr3_3:63733059-63733078 Msa0464120:three_prime_UTR 50.0%
! TACCTCTACAAGGGGTATGG+TGG + chr3_3:63733084-63733103 Msa0464120:three_prime_UTR 50.0%
! ACCTCTACAAGGGGTATGGT+GGG + chr3_3:63733085-63733104 Msa0464120:three_prime_UTR 50.0%
AAAGACCAGGGCTTGACCCT+GGG - chr3_3:63730508-63730527 None:intergenic 55.0%
AGGAACTAAGTGCGTGTCGC+AGG + chr3_3:63730749-63730768 Msa0464120:CDS 55.0%
TAGTAGGAAGTGGGTGACCC+TGG - chr3_3:63730830-63730849 None:intergenic 55.0%
! GTGTTGATGTGCCATCGTGC+AGG - chr3_3:63731365-63731384 None:intergenic 55.0%
!! GGAGGGAGATTTTGGAGAGG+AGG + chr3_3:63731661-63731680 Msa0464120:intron 55.0%
TTCCCTCCCAAGCAAACCCT+CGG + chr3_3:63731851-63731870 Msa0464120:intron 55.0%
GGCAGTCATGTATCACACCG+AGG - chr3_3:63731871-63731890 None:intergenic 55.0%
! CATGACTGCCTTTTTGCCCC+AGG + chr3_3:63731881-63731900 Msa0464120:intron 55.0%
CCCCAGGTGACATCTCCATA+TGG + chr3_3:63731897-63731916 Msa0464120:intron 55.0%
TCCCACCATACCCCTTGTAG+AGG - chr3_3:63733089-63733108 None:intergenic 55.0%
! TATAGCACCGAGCCTCCCCA+GGG - chr3_3:63730470-63730489 None:intergenic 60.0%
AAGACCAGGGCTTGACCCTG+GGG - chr3_3:63730507-63730526 None:intergenic 60.0%
CAAAGACCAGGGCTTGACCC+TGG - chr3_3:63730509-63730528 None:intergenic 60.0%
! CACCGAGGGTTTGCTTGGGA+GGG - chr3_3:63731856-63731875 None:intergenic 60.0%
! ACACCGAGGGTTTGCTTGGG+AGG - chr3_3:63731857-63731876 None:intergenic 60.0%
TTGAGGCCCATACCCTGGGG+AGG + chr3_3:63730455-63730474 Msa0464120:five_prime_UTR 65.0%
ACCGAGCCTCCCCAGGGTAT+GGG - chr3_3:63730464-63730483 None:intergenic 65.0%
! CTATAGCACCGAGCCTCCCC+AGG - chr3_3:63730471-63730490 None:intergenic 65.0%
AGACCAGGGCTTGACCCTGG+GGG - chr3_3:63730506-63730525 None:intergenic 65.0%
GCCCATACCCTGGGGAGGCT+CGG + chr3_3:63730460-63730479 Msa0464120:five_prime_UTR 70.0%
CACCGAGCCTCCCCAGGGTA+TGG - chr3_3:63730465-63730484 None:intergenic 70.0%
TAGCGCTGCTTGCACCCCCC+AGG + chr3_3:63730488-63730507 Msa0464120:five_prime_UTR 70.0%
AGCGCTGCTTGCACCCCCCA+GGG + chr3_3:63730489-63730508 Msa0464120:five_prime_UTR 70.0%
GACCAGGGCTTGACCCTGGG+GGG - chr3_3:63730505-63730524 None:intergenic 70.0%
CACCCCCCAGGGTCAAGCCC+TGG + chr3_3:63730500-63730519 Msa0464120:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 63730425 63733245 63730425 ID=Msa0464120;Name=Msa0464120
chr3_3 mRNA 63730425 63733245 63730425 ID=Msa0464120-mRNA-1;Parent=Msa0464120;Name=Msa0464120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=202|1|1|1|1|1|4|271|220
chr3_3 exon 63730425 63730860 63730425 ID=Msa0464120-mRNA-1:exon:13956;Parent=Msa0464120-mRNA-1
chr3_3 exon 63731903 63732109 63731903 ID=Msa0464120-mRNA-1:exon:13957;Parent=Msa0464120-mRNA-1
chr3_3 exon 63732223 63732299 63732223 ID=Msa0464120-mRNA-1:exon:13958;Parent=Msa0464120-mRNA-1
chr3_3 exon 63732830 63733245 63732830 ID=Msa0464120-mRNA-1:exon:13959;Parent=Msa0464120-mRNA-1
chr3_3 five_prime_UTR 63730425 63730626 63730425 ID=Msa0464120-mRNA-1:five_prime_utr;Parent=Msa0464120-mRNA-1
chr3_3 CDS 63730627 63730860 63730627 ID=Msa0464120-mRNA-1:cds;Parent=Msa0464120-mRNA-1
chr3_3 CDS 63731903 63732109 63731903 ID=Msa0464120-mRNA-1:cds;Parent=Msa0464120-mRNA-1
chr3_3 CDS 63732223 63732299 63732223 ID=Msa0464120-mRNA-1:cds;Parent=Msa0464120-mRNA-1
chr3_3 CDS 63732830 63732974 63732830 ID=Msa0464120-mRNA-1:cds;Parent=Msa0464120-mRNA-1
chr3_3 three_prime_UTR 63732975 63733245 63732975 ID=Msa0464120-mRNA-1:three_prime_utr;Parent=Msa0464120-mRNA-1
Gene Sequence

>Msa0464120

ATGGCAAAAGGCTTCAACCCAAGTTCAGGAACACGAATTGTTCTTAGTATTTTATTGTTATGCTTCACCTCGCTTATTAATCTCCCTCAAACCAAGGCCATTTGGTTAAGTATCCCCAGTTCAGGAACTAAGTGCGTGTCGCAGGATATCCAAACACATGTTGTCGTTTTAGCCAATTACTATGTTGTTGCCGATAATATCCAGGGTCACCCACTTCCTACTATTTCTGCCAAGGTGACATCTCCATATGGAAATAATCTTCACAACAATGAAAATGTTAGCCAAGGTCAATTTGCATTTACAACTACGGAGAGTGGTAGCTATGTGGCATGCTTTTGGATGAATAGCAAAAATCTAGCAGGTTCTTCAATTAGTCTTGAATGGAAAACTGGAATCTCTGCCAAAGATTGGGACTCTGTTGCTAAAAAGGAAAAGATAGAGGGTGTTGAACTTGAGCTAAGGAAACTTGATGGAGCTGTGCAAGCCATCCATGAGAATCTGTTATATTTAAAGAACAGGGAAGCAGAGATGAGAGAAGTAAGCGAAGCAACAAATGGCAGAGTTGCGTGGTTCAGTATAATGTCTCTTGGCGTATGCGTTTCGGTTTCAGTGTTGCAGCTGTTGTATCTGAGACGCTACTTTCGGAAGAAGAAGCTCATATAG

Protein sequence

>Msa0464120

MAKGFNPSSGTRIVLSILLLCFTSLINLPQTKAIWLSIPSSGTKCVSQDIQTHVVVLANYYVVADNIQGHPLPTISAKVTSPYGNNLHNNENVSQGQFAFTTTESGSYVACFWMNSKNLAGSSISLEWKTGISAKDWDSVAKKEKIEGVELELRKLDGAVQAIHENLLYLKNREAEMREVSEATNGRVAWFSIMSLGVCVSVSVLQLLYLRRYFRKKKLI*