AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0555510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555510 MtrunA17_Chr4g0041461 90.761 368 7 2 1 368 1 341 0.0 686
Msa0555510 MtrunA17_Chr2g0319981 68.767 365 84 4 1 365 1 335 1.20e-167 471
Msa0555510 MtrunA17_Chr1g0164721 30.547 311 158 11 103 366 72 371 4.03e-26 108
Msa0555510 MtrunA17_Chr5g0393371 37.500 112 66 3 103 211 10 120 5.94e-12 66.6
Msa0555510 MtrunA17_Chr1g0159491 48.387 62 32 0 110 171 17 78 8.71e-12 60.5
Msa0555510 MtrunA17_Chr1g0159511 42.667 75 40 1 103 174 10 84 2.50e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555510 AT2G42750.1 64.130 368 100 6 1 364 1 340 4.09e-154 437
Msa0555510 AT5G23240.1 37.766 188 101 7 103 281 54 234 5.39e-29 117

Find 104 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATCCATAATTGTAATT+TGG 0.087736 4_1:+53516834 Msa0555510:three_prime_UTR
AAAATATGAAGGAACCATTT+TGG 0.185321 4_1:-53512694 None:intergenic
TTCAAGGATATTACCCAAAA+TGG 0.190414 4_1:+53512680 Msa0555510:CDS
ACTATAATTGGTGACTTTAA+TGG 0.191913 4_1:+53512317 Msa0555510:exon
CAGGTTGCTCTAATGCTTTC+AGG 0.193170 4_1:+53515263 Msa0555510:intron
TGAAGACTATTATGCAGTTT+TGG 0.211869 4_1:+53512551 Msa0555510:CDS
ATTTACCCAAATTACAATTA+TGG 0.216983 4_1:-53516840 None:intergenic
TCCTTATCCCTTTAAATCTT+TGG 0.228960 4_1:-53517094 None:intergenic
GATATGTTATAGGGAAAATA+AGG 0.231600 4_1:-53516741 None:intergenic
TATTTCTACCAAAGATTTAA+AGG 0.241527 4_1:+53517086 Msa0555510:three_prime_UTR
ACAATCCATAATTGTAATTT+GGG 0.267467 4_1:+53516835 Msa0555510:three_prime_UTR
ATAGCCGTTTGAATTAATTC+AGG 0.289083 4_1:-53514528 None:intergenic
ATTCAATGACATGCTATATA+TGG 0.294688 4_1:-53516790 None:intergenic
GAAAAGACAGTTAAAATTCT+TGG 0.297744 4_1:+53515427 Msa0555510:CDS
CTGCAGCTGCTGCTAGAAAA+TGG 0.315567 4_1:+53516633 Msa0555510:CDS
GACATCAATCAATCCTTTCA+TGG 0.320575 4_1:+53513482 Msa0555510:CDS
ATCTGCTCCGCTGTTGCATC+TGG 0.329067 4_1:-53513219 None:intergenic
CAAGTGTTCTACATAGAAAT+AGG 0.330785 4_1:-53512282 None:intergenic
AGTTGCAAACGAAGAGGTTT+TGG 0.340245 4_1:+53512471 Msa0555510:CDS
GGACAGAGAGGATATGTTAT+AGG 0.342543 4_1:-53516751 None:intergenic
ACCAAAGATTTAAAGGGATA+AGG 0.344194 4_1:+53517093 Msa0555510:three_prime_UTR
ATGATAAAACAAATTCATAC+TGG 0.346560 4_1:+53516339 Msa0555510:CDS
GCCAGAGTATACAATCAGTT+TGG 0.347992 4_1:+53514501 Msa0555510:CDS
TTACATTGACTCTTTCTATA+CGG 0.355741 4_1:-53514932 None:intergenic
GTCCAATGAATGCAGTCAAC+AGG 0.364201 4_1:-53514870 None:intergenic
TCATAAACCCTGCGCTGAAC+TGG 0.373813 4_1:-53513438 None:intergenic
GGGATACATGTGTATATGTT+AGG 0.390211 4_1:+53512725 Msa0555510:CDS
TCAGGAATGGGATCAGCATT+AGG 0.391033 4_1:+53515281 Msa0555510:CDS
CCAAGAGACTACGAAAATTC+AGG 0.392251 4_1:+53516380 Msa0555510:CDS
GGATCGTTGCCACTCAAATC+CGG 0.392784 4_1:-53513279 None:intergenic
GCCCTGTTGACTGCATTCAT+TGG 0.406145 4_1:+53514868 Msa0555510:intron
GCTCTAATGCTTTCAGGAAT+GGG 0.406320 4_1:+53515269 Msa0555510:CDS
AGGGTTTATGATGATATTCA+TGG 0.407166 4_1:+53513450 Msa0555510:CDS
GACAGAGAGGATATGTTATA+GGG 0.412780 4_1:-53516750 None:intergenic
ATTTCTACCAAAGATTTAAA+GGG 0.414271 4_1:+53517087 Msa0555510:three_prime_UTR
AATGTTGCCTGTGATGTGTT+TGG 0.418176 4_1:+53514456 Msa0555510:CDS
GGTGCAGAAATTTGTGGTCT+CGG 0.423746 4_1:-53513301 None:intergenic
AAACCTCTTCGTTTGCAACT+TGG 0.425366 4_1:-53512468 None:intergenic
TTTAGAGCTTCTGTGTATAG+TGG 0.435652 4_1:-53512354 None:intergenic
TTCAAACGGCTATTGAAAGT+TGG 0.439837 4_1:+53514538 Msa0555510:CDS
TGCTCTAATGCTTTCAGGAA+TGG 0.444362 4_1:+53515268 Msa0555510:CDS
CCAGAGTATACAATCAGTTT+GGG 0.448971 4_1:+53514502 Msa0555510:CDS
TTTGGAATTGAAGAAGACTT+TGG 0.450046 4_1:+53514474 Msa0555510:CDS
ACAAATTCAGTGATGGGTTG+TGG 0.454596 4_1:-53512380 None:intergenic
GGTAAGAGTTGCTACTGATC+AGG 0.462255 4_1:+53512497 Msa0555510:CDS
TTGGTGGAAGAGGTTGCCTC+TGG 0.479210 4_1:-53516707 None:intergenic
AAAGTTACACATCAAGATCA+AGG 0.480875 4_1:-53516935 None:intergenic
AATGAAGGTGCAGAAATTTG+TGG 0.484237 4_1:-53513307 None:intergenic
CCACTAGTCCTTGGTGGAAG+AGG 0.485158 4_1:-53516717 None:intergenic
TCTGGAAGTTTGACTGTGGA+AGG 0.491376 4_1:-53516689 None:intergenic
CTCATAGACTTCATTAATGA+AGG 0.495012 4_1:-53513322 None:intergenic
GTGCAGAAATTTGTGGTCTC+GGG 0.497638 4_1:-53513300 None:intergenic
TAGCCGTTTGAATTAATTCA+GGG 0.500760 4_1:-53514527 None:intergenic
TTCAGCTCCAACACTGTCAC+TGG 0.500793 4_1:-53512532 None:intergenic
GATCGTTGCCACTCAAATCC+GGG 0.515416 4_1:-53513278 None:intergenic
AAATAAGGGCCACTAGTCCT+TGG 0.521692 4_1:-53516726 None:intergenic
TCAGTGATCCAGTTCAGCGC+AGG 0.523230 4_1:+53513430 Msa0555510:CDS
TATGGATGAATTAATTACAT+TGG 0.523638 4_1:-53516772 None:intergenic
GATTTATAGTAGTATATACA+AGG 0.538744 4_1:+53516878 Msa0555510:three_prime_UTR
CTTGGTGTTGCAAATCTCCA+TGG 0.539226 4_1:-53512450 None:intergenic
AGAAAATTATCATCAGCTAA+AGG 0.539737 4_1:+53517005 Msa0555510:three_prime_UTR
TACGACACAAATTCAGTGAT+GGG 0.541733 4_1:-53512386 None:intergenic
CCCAGTCCCAGAAAATATGA+AGG 0.542161 4_1:-53512705 None:intergenic
GAACCCTGAATTAATTCAAA+CGG 0.544125 4_1:+53514524 Msa0555510:CDS
TCGACGAAAACATGATCCTT+CGG 0.546745 4_1:-53513516 None:intergenic
CTTCATTAATGAAGTCTATG+AGG 0.547350 4_1:+53513323 Msa0555510:CDS
TAAGGGCCACTAGTCCTTGG+TGG 0.552794 4_1:-53516723 None:intergenic
ATATGTTATAGGGAAAATAA+GGG 0.555317 4_1:-53516740 None:intergenic
TTCAATTCCAAACACATCAC+AGG 0.555793 4_1:-53514463 None:intergenic
CTACGACACAAATTCAGTGA+TGG 0.563171 4_1:-53512387 None:intergenic
CAGTGATCCAGTTCAGCGCA+GGG 0.564590 4_1:+53513431 Msa0555510:CDS
CCCAAACTGATTGTATACTC+TGG 0.564770 4_1:-53514502 None:intergenic
CATGGACGATTCTAGTCCGA+AGG 0.574240 4_1:+53513500 Msa0555510:CDS
TCATACTGGGACAATCTTCG+CGG 0.577771 4_1:+53516353 Msa0555510:CDS
GAAAATGGAGGGAATACTCA+AGG 0.578572 4_1:+53516648 Msa0555510:CDS
TGATAAAACAAATTCATACT+GGG 0.578815 4_1:+53516340 Msa0555510:CDS
GTCGATGAATTCAGCTGCAT+AGG 0.581217 4_1:+53513534 Msa0555510:CDS
AAACACATCACAGGCAACAT+TGG 0.584006 4_1:-53514454 None:intergenic
CCTCTTCCACCAAGGACTAG+TGG 0.584975 4_1:+53516717 Msa0555510:CDS
GGACTAGAATCGTCCATGAA+AGG 0.589389 4_1:-53513495 None:intergenic
ATGGAGGGAATACTCAAGGA+AGG 0.597715 4_1:+53516652 Msa0555510:CDS
TCGAGAATGATGAAGCAGAA+AGG 0.598097 4_1:+53516314 Msa0555510:CDS
ACACCAAGTTGCAAACGAAG+AGG 0.606484 4_1:+53512465 Msa0555510:CDS
AACGGCAGGCAAATACCCGA+TGG 0.610608 4_1:+53515402 Msa0555510:intron
ATTTGTGTCGTAGAAGCTCA+TGG 0.614378 4_1:+53512397 Msa0555510:CDS
AGCTGCTGCTAGAAAATGGA+GGG 0.615130 4_1:+53516637 Msa0555510:CDS
ATTAATTACATTGGACAGAG+AGG 0.619569 4_1:-53516763 None:intergenic
TCCAATGAATGCAGTCAACA+GGG 0.619810 4_1:-53514869 None:intergenic
CCAGCTTCCAGATGCAACAG+CGG 0.621454 4_1:+53513212 Msa0555510:intron
TTGTATGAAAACATGCCACC+CGG 0.634799 4_1:+53513260 Msa0555510:CDS
AGGGAATACTCAAGGAAGGG+TGG 0.636023 4_1:+53516656 Msa0555510:CDS
ACATGCCACCCGGATTTGAG+TGG 0.636275 4_1:+53513270 Msa0555510:CDS
TGCCTCTGGAAGTTTGACTG+TGG 0.643257 4_1:-53516693 None:intergenic
CAGCTGCTGCTAGAAAATGG+AGG 0.647077 4_1:+53516636 Msa0555510:CDS
ACGGCAGGCAAATACCCGAT+GGG 0.649180 4_1:+53515403 Msa0555510:intron
GTGTCATGCAGGAGCAAGCG+AGG 0.652284 4_1:+53516291 Msa0555510:intron
AAGTTACACATCAAGATCAA+GGG 0.653028 4_1:-53516934 None:intergenic
TTCCACAGTCAAACTTCCAG+AGG 0.653132 4_1:+53516691 Msa0555510:CDS
TGGAGGGAATACTCAAGGAA+GGG 0.660724 4_1:+53516653 Msa0555510:CDS
AACAGCGGAGCAGATCAAGA+AGG 0.661686 4_1:+53513227 Msa0555510:CDS
ACATGTGTATATGTTAGGAG+AGG 0.662987 4_1:+53512730 Msa0555510:CDS
AGAGGCAACCTCTTCCACCA+AGG 0.699546 4_1:+53516709 Msa0555510:CDS
ATTTATAGTAGTATATACAA+GGG 0.703285 4_1:+53516879 Msa0555510:three_prime_UTR
CGTTGCCACTCAAATCCGGG+TGG 0.724566 4_1:-53513275 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTAATTGATATTTTTTTAA+GGG - chr4_1:53512760-53512779 None:intergenic 10.0%
!!! AGTTAATTGATATTTTTTTA+AGG - chr4_1:53512761-53512780 None:intergenic 10.0%
!! AAATGAAAATATAAAAATGG+AGG - chr4_1:53512257-53512276 None:intergenic 15.0%
!!! TTTTTAGTAAACAATCATTT+TGG + chr4_1:53512792-53512811 Msa0555510:intron 15.0%
!!! TGAGTTAAAAAAAAGTTTTT+TGG - chr4_1:53513058-53513077 None:intergenic 15.0%
!!! GTTGTTTTGATTTTTTAAAT+AGG + chr4_1:53514600-53514619 Msa0555510:intron 15.0%
!!! TATTACTGATATGTTTTATT+TGG + chr4_1:53514651-53514670 Msa0555510:intron 15.0%
!! TTATATTGTTAAGGAAAAAA+TGG - chr4_1:53515473-53515492 None:intergenic 15.0%
!! AAGTTATTCTTATATTGTTA+AGG - chr4_1:53515482-53515501 None:intergenic 15.0%
!! CAAAATTATGAAAAATGTTA+TGG - chr4_1:53515751-53515770 None:intergenic 15.0%
!!! TACTAATTTTACATTAATGA+GGG + chr4_1:53516130-53516149 Msa0555510:intron 15.0%
!! ATAATTATCTACTAAAGAAA+GGG - chr4_1:53516211-53516230 None:intergenic 15.0%
!! TATTGTTAAAAGAAAAATCA+TGG - chr4_1:53516474-53516493 None:intergenic 15.0%
!! ATTTATAGTAGTATATACAA+GGG + chr4_1:53516879-53516898 Msa0555510:three_prime_UTR 15.0%
!!! AATCTTCTTTTCACTATAAT+TGG + chr4_1:53512305-53512324 Msa0555510:five_prime_UTR 20.0%
!!! TGTGTTTTTATAGAATTTCA+AGG + chr4_1:53512664-53512683 Msa0555510:intron 20.0%
!! AAAATTCAAGATATCCAAAA+AGG - chr4_1:53513355-53513374 None:intergenic 20.0%
!! TATTATGCTTCAAAAATTTG+TGG + chr4_1:53513374-53513393 Msa0555510:intron 20.0%
!!! TTTTCTAACTTTTCTATTTC+AGG + chr4_1:53513404-53513423 Msa0555510:intron 20.0%
!! AACACAATTCTTAAAATACT+AGG + chr4_1:53513985-53514004 Msa0555510:intron 20.0%
!!! TTTTATGTGCTTAATTGATA+TGG + chr4_1:53514296-53514315 Msa0555510:intron 20.0%
!! ATTAACATCTAATCTAACAA+AGG - chr4_1:53514357-53514376 None:intergenic 20.0%
!! AACATATCAGTAATATAGAA+TGG - chr4_1:53514646-53514665 None:intergenic 20.0%
!!! TAGTTAAACACTTAGTTTTT+AGG + chr4_1:53514756-53514775 Msa0555510:intron 20.0%
!!! GAAATAAACTTTTATGACTT+TGG - chr4_1:53514960-53514979 None:intergenic 20.0%
!! GTTTAATGACTAAATTAATG+TGG - chr4_1:53515164-53515183 None:intergenic 20.0%
!! ATCTAACCATACTATAATAA+CGG + chr4_1:53515384-53515403 Msa0555510:intron 20.0%
!! GAATTCAAAATTAGTGTAAA+TGG + chr4_1:53515542-53515561 Msa0555510:intron 20.0%
!!! AATGACATTACAAATTTTCA+AGG - chr4_1:53515598-53515617 None:intergenic 20.0%
!! ATTGTCTTAAAGAATATTCT+TGG - chr4_1:53516023-53516042 None:intergenic 20.0%
!!! CTACTAATTTTACATTAATG+AGG + chr4_1:53516129-53516148 Msa0555510:intron 20.0%
!! CATAATTATCTACTAAAGAA+AGG - chr4_1:53516212-53516231 None:intergenic 20.0%
!! ATGATAAAACAAATTCATAC+TGG + chr4_1:53516339-53516358 Msa0555510:CDS 20.0%
!! TGATAAAACAAATTCATACT+GGG + chr4_1:53516340-53516359 Msa0555510:CDS 20.0%
!! GAATATGTAAATACAAAAGA+AGG + chr4_1:53516407-53516426 Msa0555510:intron 20.0%
!! ATCATTTCAAAACTATTTAG+TGG - chr4_1:53516570-53516589 None:intergenic 20.0%
!! ATATGTTATAGGGAAAATAA+GGG - chr4_1:53516743-53516762 None:intergenic 20.0%
!! TATGGATGAATTAATTACAT+TGG - chr4_1:53516775-53516794 None:intergenic 20.0%
!! AACAATCCATAATTGTAATT+TGG + chr4_1:53516834-53516853 Msa0555510:three_prime_UTR 20.0%
!! ACAATCCATAATTGTAATTT+GGG + chr4_1:53516835-53516854 Msa0555510:three_prime_UTR 20.0%
!! ATTTACCCAAATTACAATTA+TGG - chr4_1:53516843-53516862 None:intergenic 20.0%
!! GATTTATAGTAGTATATACA+AGG + chr4_1:53516878-53516897 Msa0555510:three_prime_UTR 20.0%
!!! TATTTCTACCAAAGATTTAA+AGG + chr4_1:53517086-53517105 Msa0555510:three_prime_UTR 20.0%
!! ATTTCTACCAAAGATTTAAA+GGG + chr4_1:53517087-53517106 Msa0555510:three_prime_UTR 20.0%
!! ACTATAATTGGTGACTTTAA+TGG + chr4_1:53512317-53512336 Msa0555510:exon 25.0%
!! AAATATGAAGGAACCATTTT+GGG - chr4_1:53512696-53512715 None:intergenic 25.0%
!! AAAATATGAAGGAACCATTT+TGG - chr4_1:53512697-53512716 None:intergenic 25.0%
!! AATGTGTCTTTTAGTCAATT+TGG + chr4_1:53512938-53512957 Msa0555510:intron 25.0%
! TTATTTACAAAAGAGACACT+TGG + chr4_1:53512970-53512989 Msa0555510:intron 25.0%
! TATTTACAAAAGAGACACTT+GGG + chr4_1:53512971-53512990 Msa0555510:intron 25.0%
! AATGTTGCCTTATATGTTAA+CGG + chr4_1:53513584-53513603 Msa0555510:intron 25.0%
! TACCAAATATTTAGACCATT+GGG + chr4_1:53513614-53513633 Msa0555510:intron 25.0%
!! TCTCCAAAAAAGTTTGATTT+AGG + chr4_1:53513669-53513688 Msa0555510:intron 25.0%
!!! TGTCCTAAATCAAACTTTTT+TGG - chr4_1:53513675-53513694 None:intergenic 25.0%
!! TTTATGTGTGTCCATTTTAT+AGG - chr4_1:53513934-53513953 None:intergenic 25.0%
! ATAAAATGGACACACATAAA+AGG + chr4_1:53513934-53513953 Msa0555510:intron 25.0%
! AAGACAATTGAATCAAAATG+TGG - chr4_1:53514143-53514162 None:intergenic 25.0%
! TTTCCTTAATTTAACTCCTT+TGG + chr4_1:53514161-53514180 Msa0555510:intron 25.0%
! TTACCAAAGGAGTTAAATTA+AGG - chr4_1:53514167-53514186 None:intergenic 25.0%
! GATATGGTTCATTTATTGAT+AGG + chr4_1:53514312-53514331 Msa0555510:intron 25.0%
! TAATCTAACAAAGGTAATGA+AGG - chr4_1:53514348-53514367 None:intergenic 25.0%
!!! ATCTATTTTGAGTTTTTGCA+AGG + chr4_1:53514380-53514399 Msa0555510:intron 25.0%
! ATATCAGTAATATAGAATGG+TGG - chr4_1:53514643-53514662 None:intergenic 25.0%
! TTGAAGTTAAGAAATAATGG+TGG - chr4_1:53514697-53514716 None:intergenic 25.0%
! CTGTTGAAGTTAAGAAATAA+TGG - chr4_1:53514700-53514719 None:intergenic 25.0%
!!! TTACATTGACTCTTTCTATA+CGG - chr4_1:53514935-53514954 None:intergenic 25.0%
! TTACAAATAGAGATCTTAAG+GGG - chr4_1:53514992-53515011 None:intergenic 25.0%
! CTTACAAATAGAGATCTTAA+GGG - chr4_1:53514993-53515012 None:intergenic 25.0%
! TCTTACAAATAGAGATCTTA+AGG - chr4_1:53514994-53515013 None:intergenic 25.0%
! GAAAAGACAGTTAAAATTCT+TGG + chr4_1:53515427-53515446 Msa0555510:CDS 25.0%
! TGTATGCATTAACTTAATCT+TGG + chr4_1:53515505-53515524 Msa0555510:intron 25.0%
! GTATGCATTAACTTAATCTT+GGG + chr4_1:53515506-53515525 Msa0555510:intron 25.0%
! AACATATCTGTAAGCAATTT+AGG - chr4_1:53515865-53515884 None:intergenic 25.0%
!! TTTTAACAATATGCTTCAGT+AGG + chr4_1:53516483-53516502 Msa0555510:intron 25.0%
! TTCAAAACTATTTAGTGGAA+TGG - chr4_1:53516565-53516584 None:intergenic 25.0%
!! AAATGATGATAATTTTGCAG+AGG + chr4_1:53516583-53516602 Msa0555510:intron 25.0%
! GATATGTTATAGGGAAAATA+AGG - chr4_1:53516744-53516763 None:intergenic 25.0%
! ATTCAATGACATGCTATATA+TGG - chr4_1:53516793-53516812 None:intergenic 25.0%
! AGAAAATTATCATCAGCTAA+AGG + chr4_1:53517005-53517024 Msa0555510:three_prime_UTR 25.0%
!!! GAGGTTGATATTTTGTTGAA+TGG - chr4_1:53512238-53512257 None:intergenic 30.0%
CAAGTGTTCTACATAGAAAT+AGG - chr4_1:53512285-53512304 None:intergenic 30.0%
! TGAAGACTATTATGCAGTTT+TGG + chr4_1:53512551-53512570 Msa0555510:CDS 30.0%
! GAAGACTATTATGCAGTTTT+GGG + chr4_1:53512552-53512571 Msa0555510:CDS 30.0%
ACAGACGTAAAATAAGAGTT+TGG - chr4_1:53512595-53512614 None:intergenic 30.0%
ATGCATGTTCAATCATTTGT+TGG - chr4_1:53512645-53512664 None:intergenic 30.0%
TTCAAGGATATTACCCAAAA+TGG + chr4_1:53512680-53512699 Msa0555510:CDS 30.0%
! AATGGTTCCTTCATATTTTC+TGG + chr4_1:53512698-53512717 Msa0555510:CDS 30.0%
! ATGGTTCCTTCATATTTTCT+GGG + chr4_1:53512699-53512718 Msa0555510:CDS 30.0%
ACTAAAAGACACATTATTCG+AGG - chr4_1:53512933-53512952 None:intergenic 30.0%
!!! ATTCGACGAGTTTTAGTTTA+AGG + chr4_1:53513005-53513024 Msa0555510:intron 30.0%
TTAGTTTAAGGAGTTGAACA+AGG + chr4_1:53513017-53513036 Msa0555510:intron 30.0%
TAGTTTAAGGAGTTGAACAA+GGG + chr4_1:53513018-53513037 Msa0555510:intron 30.0%
CTCATAGACTTCATTAATGA+AGG - chr4_1:53513325-53513344 None:intergenic 30.0%
CTTCATTAATGAAGTCTATG+AGG + chr4_1:53513323-53513342 Msa0555510:CDS 30.0%
AGGGTTTATGATGATATTCA+TGG + chr4_1:53513450-53513469 Msa0555510:CDS 30.0%
GTACCAAATATTTAGACCAT+TGG + chr4_1:53513613-53513632 Msa0555510:intron 30.0%
TATCCAGTATAGTAGTTATG+GGG - chr4_1:53513722-53513741 None:intergenic 30.0%
CTATCCAGTATAGTAGTTAT+GGG - chr4_1:53513723-53513742 None:intergenic 30.0%
CATAACTACTATACTGGATA+GGG + chr4_1:53513722-53513741 Msa0555510:intron 30.0%
ATAACTACTATACTGGATAG+GGG + chr4_1:53513723-53513742 Msa0555510:intron 30.0%
ACTCATGATTAGCAATGATT+GGG - chr4_1:53513847-53513866 None:intergenic 30.0%
! GTGTCCATTTTATAGGATTT+GGG - chr4_1:53513927-53513946 None:intergenic 30.0%
! TGTGTCCATTTTATAGGATT+TGG - chr4_1:53513928-53513947 None:intergenic 30.0%
TTGTTAGGGTAAATTACCAA+AGG - chr4_1:53514180-53514199 None:intergenic 30.0%
! TCGGAAATGCTTTTCAATAA+AGG - chr4_1:53514216-53514235 None:intergenic 30.0%
GTCAGCATTTATTATCTCTT+CGG - chr4_1:53514262-53514281 None:intergenic 30.0%
ATACTTCAATATCCTTGAAC+AGG + chr4_1:53514417-53514436 Msa0555510:intron 30.0%
! TTTGGAATTGAAGAAGACTT+TGG + chr4_1:53514474-53514493 Msa0555510:CDS 30.0%
GAACCCTGAATTAATTCAAA+CGG + chr4_1:53514524-53514543 Msa0555510:CDS 30.0%
TAGCCGTTTGAATTAATTCA+GGG - chr4_1:53514530-53514549 None:intergenic 30.0%
ATAGCCGTTTGAATTAATTC+AGG - chr4_1:53514531-53514550 None:intergenic 30.0%
!! AAGTTGGTATGTTTATGACT+AGG + chr4_1:53514554-53514573 Msa0555510:intron 30.0%
AAATCAAAACAACGAATGCA+TGG - chr4_1:53514593-53514612 None:intergenic 30.0%
ATATGCAGTTATGCTTCATT+TGG + chr4_1:53514731-53514750 Msa0555510:intron 30.0%
GTATAGAAAGAGTCAATGTA+AGG + chr4_1:53514934-53514953 Msa0555510:intron 30.0%
TACAAATAGAGATCTTAAGG+GGG - chr4_1:53514991-53515010 None:intergenic 30.0%
! GCTATTGAACTTTTCATACT+AGG + chr4_1:53515095-53515114 Msa0555510:intron 30.0%
CATACTAGGAAATTTCTTGA+TGG + chr4_1:53515109-53515128 Msa0555510:intron 30.0%
GTAGTTGTTATAACTAGAAG+AGG - chr4_1:53515224-53515243 None:intergenic 30.0%
CATTAACTTAATCTTGGGAA+AGG + chr4_1:53515511-53515530 Msa0555510:intron 30.0%
AAATTAGTGTAAATGGCCAT+TGG + chr4_1:53515549-53515568 Msa0555510:intron 30.0%
! TTTAGTTCCTGAAAGATAGA+AGG + chr4_1:53515617-53515636 Msa0555510:intron 30.0%
TTAGTTCCTGAAAGATAGAA+GGG + chr4_1:53515618-53515637 Msa0555510:intron 30.0%
!! CAAGCATAAACGTATTTTGA+TGG + chr4_1:53515703-53515722 Msa0555510:intron 30.0%
CAACTAATCGTGGATAATAA+TGG - chr4_1:53515806-53515825 None:intergenic 30.0%
GTAAAACTTTCAACTAATCG+TGG - chr4_1:53515816-53515835 None:intergenic 30.0%
TCTCAACAAACATGAATTCT+AGG - chr4_1:53515840-53515859 None:intergenic 30.0%
CCATCTTAAAATTTGTGCTT+AGG - chr4_1:53515917-53515936 None:intergenic 30.0%
!! CCTAAGCACAAATTTTAAGA+TGG + chr4_1:53515914-53515933 Msa0555510:intron 30.0%
CTAACTAAACACCAAGATAT+GGG - chr4_1:53515985-53516004 None:intergenic 30.0%
!!! TTTTGAAGTTCTGAGTTCTT+AGG + chr4_1:53516069-53516088 Msa0555510:intron 30.0%
CTACTAAAGAAAGGGATAAT+AGG - chr4_1:53516203-53516222 None:intergenic 30.0%
TCATGGTTGATCAAGTATTA+TGG - chr4_1:53516457-53516476 None:intergenic 30.0%
CATGATTATTTAGCTGTTTG+TGG + chr4_1:53516506-53516525 Msa0555510:intron 30.0%
!! TGGCAATTACTTTTGTGTTA+AGG + chr4_1:53516526-53516545 Msa0555510:intron 30.0%
ATTAATTACATTGGACAGAG+AGG - chr4_1:53516766-53516785 None:intergenic 30.0%
AAGTTACACATCAAGATCAA+GGG - chr4_1:53516937-53516956 None:intergenic 30.0%
AAAGTTACACATCAAGATCA+AGG - chr4_1:53516938-53516957 None:intergenic 30.0%
ACCAAAGATTTAAAGGGATA+AGG + chr4_1:53517093-53517112 Msa0555510:three_prime_UTR 30.0%
TCCTTATCCCTTTAAATCTT+TGG - chr4_1:53517097-53517116 None:intergenic 30.0%
! TTTAGAGCTTCTGTGTATAG+TGG - chr4_1:53512357-53512376 None:intergenic 35.0%
TACGACACAAATTCAGTGAT+GGG - chr4_1:53512389-53512408 None:intergenic 35.0%
AAAAAACTGCAACTAGTCCA+TGG + chr4_1:53512433-53512452 Msa0555510:CDS 35.0%
GGGATACATGTGTATATGTT+AGG + chr4_1:53512725-53512744 Msa0555510:CDS 35.0%
ACATGTGTATATGTTAGGAG+AGG + chr4_1:53512730-53512749 Msa0555510:CDS 35.0%
CACGAACAAAAGACACATTT+AGG - chr4_1:53512883-53512902 None:intergenic 35.0%
GAGGACTAAACTAACTAACA+AGG - chr4_1:53512914-53512933 None:intergenic 35.0%
AGTTGAACAAGGGAATATCT+TGG + chr4_1:53513028-53513047 Msa0555510:intron 35.0%
! AATGAAGGTGCAGAAATTTG+TGG - chr4_1:53513310-53513329 None:intergenic 35.0%
CATTAATGAAGTCTATGAGG+TGG + chr4_1:53513326-53513345 Msa0555510:intron 35.0%
GACATCAATCAATCCTTTCA+TGG + chr4_1:53513482-53513501 Msa0555510:CDS 35.0%
CTGAACACCGTTAACATATA+AGG - chr4_1:53513594-53513613 None:intergenic 35.0%
ATCCAGTATAGTAGTTATGG+GGG - chr4_1:53513721-53513740 None:intergenic 35.0%
CCTATCCAGTATAGTAGTTA+TGG - chr4_1:53513724-53513743 None:intergenic 35.0%
CCATAACTACTATACTGGAT+AGG + chr4_1:53513721-53513740 Msa0555510:intron 35.0%
TAACTACTATACTGGATAGG+GGG + chr4_1:53513724-53513743 Msa0555510:intron 35.0%
AGCAAGTCCATTATTATGGA+CGG - chr4_1:53513775-53513794 None:intergenic 35.0%
AAGGAGCAAGTCCATTATTA+TGG - chr4_1:53513779-53513798 None:intergenic 35.0%
CACTCATGATTAGCAATGAT+TGG - chr4_1:53513848-53513867 None:intergenic 35.0%
AATCATGAGTGAATATCCTG+TGG + chr4_1:53513857-53513876 Msa0555510:intron 35.0%
ATCATGAGTGAATATCCTGT+GGG + chr4_1:53513858-53513877 Msa0555510:intron 35.0%
AAGGCCCAAATCCTATAAAA+TGG + chr4_1:53513920-53513939 Msa0555510:intron 35.0%
ACTAGGTTATCCTCCAATTA+AGG + chr4_1:53514002-53514021 Msa0555510:intron 35.0%
CTAGGTTATCCTCCAATTAA+GGG + chr4_1:53514003-53514022 Msa0555510:intron 35.0%
!! GAAGTGTTGTCAGATTGTTA+GGG - chr4_1:53514194-53514213 None:intergenic 35.0%
! ATTTGACTGACTCATCGAAT+CGG - chr4_1:53514235-53514254 None:intergenic 35.0%
AAGGTAATGAAGGACTATCT+AGG - chr4_1:53514338-53514357 None:intergenic 35.0%
TTCAATTCCAAACACATCAC+AGG - chr4_1:53514466-53514485 None:intergenic 35.0%
CCAGAGTATACAATCAGTTT+GGG + chr4_1:53514502-53514521 Msa0555510:CDS 35.0%
TTCAAACGGCTATTGAAAGT+TGG + chr4_1:53514538-53514557 Msa0555510:CDS 35.0%
!!! CACTTAGTTTTTAGGACCTT+CGG + chr4_1:53514764-53514783 Msa0555510:intron 35.0%
!!! CAATGTTATTTTCATGCCGA+AGG - chr4_1:53514783-53514802 None:intergenic 35.0%
TTGTGAAGCAACTAAGCTAA+CGG + chr4_1:53514804-53514823 Msa0555510:intron 35.0%
!!! TTTTTTCCCTTTCTGCTTGA+TGG + chr4_1:53515032-53515051 Msa0555510:intron 35.0%
TGAGATTATTAAATCCGAGC+AGG + chr4_1:53515244-53515263 Msa0555510:intron 35.0%
! ATTAGGCGATGTTTTCAGAA+TGG + chr4_1:53515298-53515317 Msa0555510:CDS 35.0%
GGTAATAGCTTAGAGATTAC+TGG + chr4_1:53515319-53515338 Msa0555510:intron 35.0%
GTATGGTTAGATAACATCAG+AGG - chr4_1:53515376-53515395 None:intergenic 35.0%
AACCATACTATAATAACGGC+AGG + chr4_1:53515388-53515407 Msa0555510:intron 35.0%
! TTAACTGTCTTTTCTCCCAT+CGG - chr4_1:53515421-53515440 None:intergenic 35.0%
AATCTTGGGAAAGGTCTTTA+TGG + chr4_1:53515520-53515539 Msa0555510:intron 35.0%
GATATACCCTTCTATCTTTC+AGG - chr4_1:53515627-53515646 None:intergenic 35.0%
CCTAACTAAACACCAAGATA+TGG - chr4_1:53515986-53516005 None:intergenic 35.0%
!! CCATATCTTGGTGTTTAGTT+AGG + chr4_1:53515983-53516002 Msa0555510:intron 35.0%
!! AAGTTCTGAGTTCTTAGGAT+TGG + chr4_1:53516074-53516093 Msa0555510:intron 35.0%
AACAATTATGAGTGTCATGC+AGG + chr4_1:53516280-53516299 Msa0555510:intron 35.0%
AGACTACGAAAATTCAGGTA+TGG + chr4_1:53516385-53516404 Msa0555510:intron 35.0%
! TGATGATAATTTTGCAGAGG+AGG + chr4_1:53516586-53516605 Msa0555510:intron 35.0%
GACAGAGAGGATATGTTATA+GGG - chr4_1:53516753-53516772 None:intergenic 35.0%
!! ACAAATTCAGTGATGGGTTG+TGG - chr4_1:53512383-53512402 None:intergenic 40.0%
CTACGACACAAATTCAGTGA+TGG - chr4_1:53512390-53512409 None:intergenic 40.0%
ATTTGTGTCGTAGAAGCTCA+TGG + chr4_1:53512397-53512416 Msa0555510:CDS 40.0%
AAACCTCTTCGTTTGCAACT+TGG - chr4_1:53512471-53512490 None:intergenic 40.0%
! AGTTGCAAACGAAGAGGTTT+TGG + chr4_1:53512471-53512490 Msa0555510:CDS 40.0%
!! CAAACGAAGAGGTTTTGGTA+GGG + chr4_1:53512476-53512495 Msa0555510:CDS 40.0%
! TTTTCAACCAGTGACAGTGT+TGG + chr4_1:53512525-53512544 Msa0555510:CDS 40.0%
!!! CTATTATGCAGTTTTGGGTC+TGG + chr4_1:53512557-53512576 Msa0555510:CDS 40.0%
!!! TCCTTCATATTTTCTGGGAC+TGG + chr4_1:53512704-53512723 Msa0555510:CDS 40.0%
!!! CCTTCATATTTTCTGGGACT+GGG + chr4_1:53512705-53512724 Msa0555510:CDS 40.0%
! TCGAGTGATTTTCTGAACTG+TGG + chr4_1:53513082-53513101 Msa0555510:intron 40.0%
! CGAGTGATTTTCTGAACTGT+GGG + chr4_1:53513083-53513102 Msa0555510:intron 40.0%
TTGTATGAAAACATGCCACC+CGG + chr4_1:53513260-53513279 Msa0555510:CDS 40.0%
! CTATGAGGTGGTTTCCTTTT+TGG + chr4_1:53513338-53513357 Msa0555510:intron 40.0%
TCGACGAAAACATGATCCTT+CGG - chr4_1:53513519-53513538 None:intergenic 40.0%
GGCCCAATGGTCTAAATATT+TGG - chr4_1:53513619-53513638 None:intergenic 40.0%
AATATTTAGACCATTGGGCC+AGG + chr4_1:53513619-53513638 Msa0555510:intron 40.0%
GGACAACTGAGTAAGCATAT+AGG + chr4_1:53513690-53513709 Msa0555510:intron 40.0%
AGTATAGTAGTTATGGGGGA+TGG - chr4_1:53513717-53513736 None:intergenic 40.0%
ATCCCCCATAACTACTATAC+TGG + chr4_1:53513716-53513735 Msa0555510:intron 40.0%
ATGATTGGGTGAGGTATGAA+GGG - chr4_1:53513833-53513852 None:intergenic 40.0%
AATGATTGGGTGAGGTATGA+AGG - chr4_1:53513834-53513853 None:intergenic 40.0%
TGATTAGCAATGATTGGGTG+AGG - chr4_1:53513842-53513861 None:intergenic 40.0%
TCATGAGTGAATATCCTGTG+GGG + chr4_1:53513859-53513878 Msa0555510:intron 40.0%
GGACACACATAAAAGGCTAA+AGG + chr4_1:53513941-53513960 Msa0555510:intron 40.0%
AGATGAGTGACACCCTTAAT+TGG - chr4_1:53514018-53514037 None:intergenic 40.0%
!! ATTAAGGGTGTCACTCATCT+TGG + chr4_1:53514018-53514037 Msa0555510:intron 40.0%
CACTCATCTTGGAACAGAAA+CGG + chr4_1:53514029-53514048 Msa0555510:intron 40.0%
!! GGAAGTGTTGTCAGATTGTT+AGG - chr4_1:53514195-53514214 None:intergenic 40.0%
AAACACATCACAGGCAACAT+TGG - chr4_1:53514457-53514476 None:intergenic 40.0%
AATGTTGCCTGTGATGTGTT+TGG + chr4_1:53514456-53514475 Msa0555510:CDS 40.0%
GCCAGAGTATACAATCAGTT+TGG + chr4_1:53514501-53514520 Msa0555510:CDS 40.0%
CCCAAACTGATTGTATACTC+TGG - chr4_1:53514505-53514524 None:intergenic 40.0%
TCCAATGAATGCAGTCAACA+GGG - chr4_1:53514872-53514891 None:intergenic 40.0%
TAGAGATCTTAAGGGGGAAA+AGG - chr4_1:53514985-53515004 None:intergenic 40.0%
TAGTAGCCATCAAGCAGAAA+GGG - chr4_1:53515041-53515060 None:intergenic 40.0%
TTAGTAGCCATCAAGCAGAA+AGG - chr4_1:53515042-53515061 None:intergenic 40.0%
TGCTCTAATGCTTTCAGGAA+TGG + chr4_1:53515268-53515287 Msa0555510:CDS 40.0%
GCTCTAATGCTTTCAGGAAT+GGG + chr4_1:53515269-53515288 Msa0555510:CDS 40.0%
TGCCTGCCGTTATTATAGTA+TGG - chr4_1:53515393-53515412 None:intergenic 40.0%
! TAACTGTCTTTTCTCCCATC+GGG - chr4_1:53515420-53515439 None:intergenic 40.0%
ATGTCCGCTCTTGAGTATAA+CGG + chr4_1:53515940-53515959 Msa0555510:intron 40.0%
AAGTCCGTTATACTCAAGAG+CGG - chr4_1:53515947-53515966 None:intergenic 40.0%
AAGAAAGGGATAATAGGTCG+AGG - chr4_1:53516197-53516216 None:intergenic 40.0%
TCGAGAATGATGAAGCAGAA+AGG + chr4_1:53516314-53516333 Msa0555510:CDS 40.0%
! CCTGAATTTTCGTAGTCTCT+TGG - chr4_1:53516383-53516402 None:intergenic 40.0%
CCAAGAGACTACGAAAATTC+AGG + chr4_1:53516380-53516399 Msa0555510:CDS 40.0%
GAAAATGGAGGGAATACTCA+AGG + chr4_1:53516648-53516667 Msa0555510:CDS 40.0%
GGACAGAGAGGATATGTTAT+AGG - chr4_1:53516754-53516773 None:intergenic 40.0%
!! CTTGGTGTTGCAAATCTCCA+TGG - chr4_1:53512453-53512472 None:intergenic 45.0%
ACACCAAGTTGCAAACGAAG+AGG + chr4_1:53512465-53512484 Msa0555510:CDS 45.0%
!! GCAAACGAAGAGGTTTTGGT+AGG + chr4_1:53512475-53512494 Msa0555510:CDS 45.0%
GGTAAGAGTTGCTACTGATC+AGG + chr4_1:53512497-53512516 Msa0555510:CDS 45.0%
CCCAGTCCCAGAAAATATGA+AGG - chr4_1:53512708-53512727 None:intergenic 45.0%
ATGTGAGAGTGAGACGTTGT+CGG + chr4_1:53512824-53512843 Msa0555510:intron 45.0%
GCATCTGGAAGCTGGTAAAA+AGG - chr4_1:53513207-53513226 None:intergenic 45.0%
GTGCAGAAATTTGTGGTCTC+GGG - chr4_1:53513303-53513322 None:intergenic 45.0%
GGTGCAGAAATTTGTGGTCT+CGG - chr4_1:53513304-53513323 None:intergenic 45.0%
GGACTAGAATCGTCCATGAA+AGG - chr4_1:53513498-53513517 None:intergenic 45.0%
GTCGATGAATTCAGCTGCAT+AGG + chr4_1:53513534-53513553 Msa0555510:CDS 45.0%
TACTATACTGGATAGGGGGA+TGG + chr4_1:53513728-53513747 Msa0555510:intron 45.0%
ACTATACTGGATAGGGGGAT+GGG + chr4_1:53513729-53513748 Msa0555510:intron 45.0%
AGAGCGACCGTCCATAATAA+TGG + chr4_1:53513765-53513784 Msa0555510:intron 45.0%
TGAGTGACACCCTTAATTGG+AGG - chr4_1:53514015-53514034 None:intergenic 45.0%
CGTCTGAAAACACCAAGTCT+AGG - chr4_1:53514058-53514077 None:intergenic 45.0%
! CAGTTTTTGCAGCCTGTTCA+AGG - chr4_1:53514432-53514451 None:intergenic 45.0%
GTCCAATGAATGCAGTCAAC+AGG - chr4_1:53514873-53514892 None:intergenic 45.0%
AAGCATTAGAGCAACCTGCT+CGG - chr4_1:53515261-53515280 None:intergenic 45.0%
CAGGTTGCTCTAATGCTTTC+AGG + chr4_1:53515263-53515282 Msa0555510:intron 45.0%
TCAGGAATGGGATCAGCATT+AGG + chr4_1:53515281-53515300 Msa0555510:CDS 45.0%
GACTTGAGAGTCCCATATCT+TGG + chr4_1:53515971-53515990 Msa0555510:intron 45.0%
TCATACTGGGACAATCTTCG+CGG + chr4_1:53516353-53516372 Msa0555510:CDS 45.0%
AGCTGCTGCTAGAAAATGGA+GGG + chr4_1:53516637-53516656 Msa0555510:CDS 45.0%
ATGGAGGGAATACTCAAGGA+AGG + chr4_1:53516652-53516671 Msa0555510:CDS 45.0%
TGGAGGGAATACTCAAGGAA+GGG + chr4_1:53516653-53516672 Msa0555510:CDS 45.0%
TCTGGAAGTTTGACTGTGGA+AGG - chr4_1:53516692-53516711 None:intergenic 45.0%
TTCCACAGTCAAACTTCCAG+AGG + chr4_1:53516691-53516710 Msa0555510:CDS 45.0%
AAATAAGGGCCACTAGTCCT+TGG - chr4_1:53516729-53516748 None:intergenic 45.0%
!! TAAAAATGAAAATATAAAAA+TGG - chr4_1:53512260-53512279 None:intergenic 5.0%
TTCAGCTCCAACACTGTCAC+TGG - chr4_1:53512535-53512554 None:intergenic 50.0%
AACAGCGGAGCAGATCAAGA+AGG + chr4_1:53513227-53513246 Msa0555510:CDS 50.0%
GATCGTTGCCACTCAAATCC+GGG - chr4_1:53513281-53513300 None:intergenic 50.0%
GGATCGTTGCCACTCAAATC+CGG - chr4_1:53513282-53513301 None:intergenic 50.0%
TCATAAACCCTGCGCTGAAC+TGG - chr4_1:53513441-53513460 None:intergenic 50.0%
CATGGACGATTCTAGTCCGA+AGG + chr4_1:53513500-53513519 Msa0555510:CDS 50.0%
CTATACTGGATAGGGGGATG+GGG + chr4_1:53513730-53513749 Msa0555510:intron 50.0%
TATGGACGGTCGCTCTTACT+TGG - chr4_1:53513761-53513780 None:intergenic 50.0%
CAGAAACGGTGACCTAGACT+TGG + chr4_1:53514043-53514062 Msa0555510:intron 50.0%
! GCCCTGTTGACTGCATTCAT+TGG + chr4_1:53514868-53514887 Msa0555510:intron 50.0%
CGCAGTCATTCAAGAGCCAA+TGG - chr4_1:53515568-53515587 None:intergenic 50.0%
AACCCGCTTGAACACAAACG+CGG + chr4_1:53516100-53516119 Msa0555510:intron 50.0%
TACCGCGTTTGTGTTCAAGC+GGG - chr4_1:53516105-53516124 None:intergenic 50.0%
CTACCGCGTTTGTGTTCAAG+CGG - chr4_1:53516106-53516125 None:intergenic 50.0%
CTTGAACACAAACGCGGTAG+TGG + chr4_1:53516106-53516125 Msa0555510:intron 50.0%
CTGCAGCTGCTGCTAGAAAA+TGG + chr4_1:53516633-53516652 Msa0555510:CDS 50.0%
CAGCTGCTGCTAGAAAATGG+AGG + chr4_1:53516636-53516655 Msa0555510:CDS 50.0%
AGGGAATACTCAAGGAAGGG+TGG + chr4_1:53516656-53516675 Msa0555510:CDS 50.0%
! TGCCTCTGGAAGTTTGACTG+TGG - chr4_1:53516696-53516715 None:intergenic 50.0%
CCAGCTTCCAGATGCAACAG+CGG + chr4_1:53513212-53513231 Msa0555510:intron 55.0%
ATCTGCTCCGCTGTTGCATC+TGG - chr4_1:53513222-53513241 None:intergenic 55.0%
ACATGCCACCCGGATTTGAG+TGG + chr4_1:53513270-53513289 Msa0555510:CDS 55.0%
TCAGTGATCCAGTTCAGCGC+AGG + chr4_1:53513430-53513449 Msa0555510:CDS 55.0%
CAGTGATCCAGTTCAGCGCA+GGG + chr4_1:53513431-53513450 Msa0555510:CDS 55.0%
TGGAATTGAGCCTGGCCCAA+TGG - chr4_1:53513632-53513651 None:intergenic 55.0%
TGGGCCAGGCTCAATTCCAT+CGG + chr4_1:53513633-53513652 Msa0555510:intron 55.0%
CAGGCTCAATTCCATCGGGA+GGG + chr4_1:53513638-53513657 Msa0555510:intron 55.0%
AGGCTCAATTCCATCGGGAG+GGG + chr4_1:53513639-53513658 Msa0555510:intron 55.0%
AGACAACTTACCCCTCCCGA+TGG - chr4_1:53513652-53513671 None:intergenic 55.0%
GCTCCTTCCAGTTCCACACA+TGG + chr4_1:53513792-53513811 Msa0555510:intron 55.0%
ACGCCATGTGTGGAACTGGA+AGG - chr4_1:53513798-53513817 None:intergenic 55.0%
TGTCACGCCATGTGTGGAAC+TGG - chr4_1:53513802-53513821 None:intergenic 55.0%
GGGACCAAGCACCCAAATCA+GGG + chr4_1:53513879-53513898 Msa0555510:intron 55.0%
ACCAAGCACCCAAATCAGGG+TGG + chr4_1:53513882-53513901 Msa0555510:intron 55.0%
CCAAGCACCCAAATCAGGGT+GGG + chr4_1:53513883-53513902 Msa0555510:intron 55.0%
TTGGGCCTTCTCCTTTCGTC+AGG - chr4_1:53513909-53513928 None:intergenic 55.0%
AACGGCAGGCAAATACCCGA+TGG + chr4_1:53515402-53515421 Msa0555510:intron 55.0%
ACGGCAGGCAAATACCCGAT+GGG + chr4_1:53515403-53515422 Msa0555510:intron 55.0%
GCGTTTGTGTTCAAGCGGGT+TGG - chr4_1:53516101-53516120 None:intergenic 55.0%
TTGGTGGAAGAGGTTGCCTC+TGG - chr4_1:53516710-53516729 None:intergenic 55.0%
AGAGGCAACCTCTTCCACCA+AGG + chr4_1:53516709-53516728 Msa0555510:CDS 55.0%
CCACTAGTCCTTGGTGGAAG+AGG - chr4_1:53516720-53516739 None:intergenic 55.0%
CCTCTTCCACCAAGGACTAG+TGG + chr4_1:53516717-53516736 Msa0555510:CDS 55.0%
TAAGGGCCACTAGTCCTTGG+TGG - chr4_1:53516726-53516745 None:intergenic 55.0%
CCGCTGTTGCATCTGGAAGC+TGG - chr4_1:53513215-53513234 None:intergenic 60.0%
CGTTGCCACTCAAATCCGGG+TGG - chr4_1:53513278-53513297 None:intergenic 60.0%
GGGCCAGGCTCAATTCCATC+GGG + chr4_1:53513634-53513653 Msa0555510:intron 60.0%
CCTCCCGATGGAATTGAGCC+TGG - chr4_1:53513640-53513659 None:intergenic 60.0%
CCAGGCTCAATTCCATCGGG+AGG + chr4_1:53513637-53513656 Msa0555510:intron 60.0%
TTTGGGTGCTTGGTCCCCAC+AGG - chr4_1:53513876-53513895 None:intergenic 60.0%
GGGGACCAAGCACCCAAATC+AGG + chr4_1:53513878-53513897 Msa0555510:intron 60.0%
!! CCCACCCTGATTTGGGTGCT+TGG - chr4_1:53513886-53513905 None:intergenic 60.0%
CGTCAGGCCCACCCTGATTT+GGG - chr4_1:53513893-53513912 None:intergenic 60.0%
TCGTCAGGCCCACCCTGATT+TGG - chr4_1:53513894-53513913 None:intergenic 60.0%
ATCAGGGTGGGCCTGACGAA+AGG + chr4_1:53513895-53513914 Msa0555510:intron 60.0%
GTGGGCCTGACGAAAGGAGA+AGG + chr4_1:53513901-53513920 Msa0555510:intron 60.0%
GTGTCATGCAGGAGCAAGCG+AGG + chr4_1:53516291-53516310 Msa0555510:intron 60.0%
GACGCGTGTCACGCCATGTG+TGG - chr4_1:53513808-53513827 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 53512222 53517184 53512222 ID=Msa0555510;Name=Msa0555510
chr4_1 mRNA 53512222 53517184 53512222 ID=Msa0555510-mRNA-1;Parent=Msa0555510;Name=Msa0555510-mRNA-1;_AED=0.14;_eAED=0.14;_QI=114|0.88|0.9|1|1|1|10|448|368
chr4_1 exon 53512222 53512578 53512222 ID=Msa0555510-mRNA-1:exon:15566;Parent=Msa0555510-mRNA-1
chr4_1 exon 53512677 53512751 53512677 ID=Msa0555510-mRNA-1:exon:15567;Parent=Msa0555510-mRNA-1
chr4_1 exon 53513216 53513344 53513216 ID=Msa0555510-mRNA-1:exon:15568;Parent=Msa0555510-mRNA-1
chr4_1 exon 53513426 53513555 53513426 ID=Msa0555510-mRNA-1:exon:15569;Parent=Msa0555510-mRNA-1
chr4_1 exon 53514439 53514559 53514439 ID=Msa0555510-mRNA-1:exon:15570;Parent=Msa0555510-mRNA-1
chr4_1 exon 53514869 53514950 53514869 ID=Msa0555510-mRNA-1:exon:15571;Parent=Msa0555510-mRNA-1
chr4_1 exon 53515266 53515319 53515266 ID=Msa0555510-mRNA-1:exon:15572;Parent=Msa0555510-mRNA-1
chr4_1 exon 53515410 53515448 53515410 ID=Msa0555510-mRNA-1:exon:15573;Parent=Msa0555510-mRNA-1
chr4_1 exon 53516302 53516401 53516302 ID=Msa0555510-mRNA-1:exon:15574;Parent=Msa0555510-mRNA-1
chr4_1 exon 53516603 53517184 53516603 ID=Msa0555510-mRNA-1:exon:15575;Parent=Msa0555510-mRNA-1
chr4_1 five_prime_UTR 53512222 53512335 53512222 ID=Msa0555510-mRNA-1:five_prime_utr;Parent=Msa0555510-mRNA-1
chr4_1 CDS 53512336 53512578 53512336 ID=Msa0555510-mRNA-1:cds;Parent=Msa0555510-mRNA-1
chr4_1 CDS 53512677 53512751 53512677 ID=Msa0555510-mRNA-1:cds;Parent=Msa0555510-mRNA-1
chr4_1 CDS 53513216 53513344 53513216 ID=Msa0555510-mRNA-1:cds;Parent=Msa0555510-mRNA-1
chr4_1 CDS 53513426 53513555 53513426 ID=Msa0555510-mRNA-1:cds;Parent=Msa0555510-mRNA-1
chr4_1 CDS 53514439 53514559 53514439 ID=Msa0555510-mRNA-1:cds;Parent=Msa0555510-mRNA-1
chr4_1 CDS 53514869 53514950 53514869 ID=Msa0555510-mRNA-1:cds;Parent=Msa0555510-mRNA-1
chr4_1 CDS 53515266 53515319 53515266 ID=Msa0555510-mRNA-1:cds;Parent=Msa0555510-mRNA-1
chr4_1 CDS 53515410 53515448 53515410 ID=Msa0555510-mRNA-1:cds;Parent=Msa0555510-mRNA-1
chr4_1 CDS 53516302 53516401 53516302 ID=Msa0555510-mRNA-1:cds;Parent=Msa0555510-mRNA-1
chr4_1 CDS 53516603 53516736 53516603 ID=Msa0555510-mRNA-1:cds;Parent=Msa0555510-mRNA-1
chr4_1 three_prime_UTR 53516737 53517184 53516737 ID=Msa0555510-mRNA-1:three_prime_utr;Parent=Msa0555510-mRNA-1
Gene Sequence

>Msa0555510

ATGGCTCAATTATTGTCACCACTATACACAGAAGCTCTAAAAATCCACAACCCATCACTGAATTTGTGTCGTAGAAGCTCATGGCAGATGCTACAACAAAAAACTGCAACTAGTCCATGGAGATTTGCAACACCAAGTTGCAAACGAAGAGGTTTTGGTAGGGTAAGAGTTGCTACTGATCAGGAATCATTTTCAACCAGTGACAGTGTTGGAGCTGAAGACTATTATGCAGTTTTGGGTCTGAATTTCAAGGATATTACCCAAAATGGTTCCTTCATATTTTCTGGGACTGGGATACATGTGTATATGTTAGGAGAGCTTCCAGATGCAACAGCGGAGCAGATCAAGAAGGCATACTACAATTGTATGAAAACATGCCACCCGGATTTGAGTGGCAACGATCCCGAGACCACAAATTTCTGCACCTTCATTAATGAAGTCTATGAGGTGCTCAGTGATCCAGTTCAGCGCAGGGTTTATGATGATATTCATGGCTATTCTTTGACATCAATCAATCCTTTCATGGACGATTCTAGTCCGAAGGATCATGTTTTCGTCGATGAATTCAGCTGCATAGGCTGCAAAAACTGTGCCAATGTTGCCTGTGATGTGTTTGGAATTGAAGAAGACTTTGGAAGAGCCAGAGTATACAATCAGTTTGGGAACCCTGAATTAATTCAAACGGCTATTGAAAGTTGCCCTGTTGACTGCATTCATTGGACATCAGCTGCACAACTATCATTACTTGAAGACGAAATGCGCCGTATAGAAAGAGTCAATGTTGCTCTAATGCTTTCAGGAATGGGATCAGCATTAGGCGATGTTTTCAGAATGGCAAATACCCGATGGGAGAAAAGACAGTTAAAATTCTTGGAGCAAGCGAGGTCGAGAATGATGAAGCAGAAAGGTTATGATAAAACAAATTCATACTGGGACAATCTTCGCGGAAAACCAAGAGACTACGAAAATTCAGAGGAGGAAGTAAAAGAAAGAGCTAAAAGAGCTGCAGCTGCTGCTAGAAAATGGAGGGAATACTCAAGGAAGGGTGGTGCTGTTAAGCCTTCCACAGTCAAACTTCCAGAGGCAACCTCTTCCACCAAGGACTAG

Protein sequence

>Msa0555510

MAQLLSPLYTEALKIHNPSLNLCRRSSWQMLQQKTATSPWRFATPSCKRRGFGRVRVATDQESFSTSDSVGAEDYYAVLGLNFKDITQNGSFIFSGTGIHVYMLGELPDATAEQIKKAYYNCMKTCHPDLSGNDPETTNFCTFINEVYEVLSDPVQRRVYDDIHGYSLTSINPFMDDSSPKDHVFVDEFSCIGCKNCANVACDVFGIEEDFGRARVYNQFGNPELIQTAIESCPVDCIHWTSAAQLSLLEDEMRRIERVNVALMLSGMGSALGDVFRMANTRWEKRQLKFLEQARSRMMKQKGYDKTNSYWDNLRGKPRDYENSEEEVKERAKRAAAAARKWREYSRKGGAVKPSTVKLPEATSSTKD*