AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0436600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436600 MtrunA17_Chr5g0429771 95.238 147 7 0 3 149 164 310 1.45e-102 296
Msa0436600 MtrunA17_Chr5g0429781 78.723 141 30 0 9 149 1 141 1.13e-83 242
Msa0436600 MtrunA17_Chr5g0429811 76.224 143 34 0 5 147 23 165 1.10e-81 238
Msa0436600 MtrunA17_Chr8g0370491 49.123 57 29 0 86 142 294 350 4.36e-12 62.4
Msa0436600 MtrunA17_Chr1g0199941 50.000 54 27 0 89 142 297 350 4.66e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436600 AT5G58770.1 70.139 144 43 0 5 148 165 308 2.13e-74 224
Msa0436600 AT5G58780.1 58.904 146 60 0 3 148 156 301 3.08e-60 188
Msa0436600 AT5G58782.1 57.639 144 61 0 5 148 145 288 1.66e-59 186
Msa0436600 AT5G58782.2 57.639 144 61 0 5 148 163 306 1.84e-59 186
Msa0436600 AT2G23410.1 56.944 144 62 0 5 148 159 302 5.08e-58 182
Msa0436600 AT5G58784.1 59.854 137 55 0 2 138 155 291 1.36e-55 176
Msa0436600 AT2G23400.1 49.306 144 58 2 5 148 158 286 1.16e-42 143
Msa0436600 AT2G17570.1 29.193 161 82 2 4 139 129 282 1.30e-16 75.1
Msa0436600 AT5G60500.1 30.556 144 88 3 4 142 125 261 6.49e-16 72.8
Msa0436600 AT5G60510.1 29.861 144 89 3 4 142 126 262 6.39e-15 70.1

Find 42 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAACGTCTCTGTCTATTT+TGG 0.158938 3_2:+90214758 None:intergenic
AGAAAACTTTGGCCAGATTT+TGG 0.177145 3_2:-90214814 Msa0436600:CDS
TGCCAAAATAAGATGGAATT+TGG 0.186602 3_2:+90215068 None:intergenic
TACCAAATTCCATCTTATTT+TGG 0.187683 3_2:-90215070 Msa0436600:CDS
AATGCCATCTTGCACTTTCT+TGG 0.210412 3_2:+90214996 None:intergenic
ACATTACCCTCTCTTGTTTA+GGG 0.228023 3_2:-90214575 Msa0436600:three_prime_UTR
TACATTACCCTCTCTTGTTT+AGG 0.233961 3_2:-90214576 Msa0436600:three_prime_UTR
CAAAATAGACAGAGACGTTT+TGG 0.290018 3_2:-90214757 Msa0436600:CDS
AAATTATTGTGGCATACTTA+TGG 0.299682 3_2:-90214606 Msa0436600:three_prime_UTR
CATATACTTATTCTCCAATA+TGG 0.302977 3_2:-90214714 Msa0436600:three_prime_UTR
TAATTTCTTGTTATGGCAAT+TGG 0.324656 3_2:-90214860 Msa0436600:CDS
AATAAATACCACAACCATAT+TGG 0.339414 3_2:+90214700 None:intergenic
GGGTTAGTAATTTCTTGTTA+TGG 0.341933 3_2:-90214867 Msa0436600:CDS
GCAAGATGGCATTATTCATT+TGG 0.346742 3_2:-90214986 Msa0436600:CDS
AACTCATCCTTTCCAAAATC+TGG 0.362218 3_2:+90214802 None:intergenic
CTGGTCCGTATTAGTAAATC+CGG 0.368742 3_2:+90214901 None:intergenic
CATATTGGAGAATAAGTATA+TGG 0.382665 3_2:+90214715 None:intergenic
CTTACCCGGATTTACTAATA+CGG 0.419675 3_2:-90214906 Msa0436600:CDS
AAATGAAAATATTATTGAAA+AGG 0.447113 3_2:-90214956 Msa0436600:CDS
GGAATTCAAATATCTGTGAT+TGG 0.460356 3_2:-90215162 Msa0436600:CDS
TTGATTGGTTGATATCTTGA+AGG 0.461999 3_2:+90214542 None:intergenic
ACGGACCAGTGGAGAACTTA+GGG 0.473431 3_2:-90214887 Msa0436600:CDS
AAGTCTTATTGTATTTATTG+TGG 0.476648 3_2:-90214645 Msa0436600:three_prime_UTR
CTTATTCTCCAATATGGTTG+TGG 0.490071 3_2:-90214708 Msa0436600:three_prime_UTR
CATTACCCTCTCTTGTTTAG+GGG 0.495128 3_2:-90214574 Msa0436600:three_prime_UTR
AGCTTACTGCCAAAATAAGA+TGG 0.496898 3_2:+90215061 None:intergenic
TATGGTTGTGGTATTTATTG+TGG 0.502620 3_2:-90214696 Msa0436600:three_prime_UTR
CGTATTAGTAAATCCGGGTA+AGG 0.505626 3_2:+90214907 None:intergenic
CTTTGTACTCTCCTCGGCAC+TGG 0.512268 3_2:+90215098 None:intergenic
TACGGACCAGTGGAGAACTT+AGG 0.513930 3_2:-90214888 Msa0436600:CDS
TGATTGGTTGATATCTTGAA+GGG 0.522386 3_2:+90214543 None:intergenic
ATGGTTGTGGTATTTATTGT+GGG 0.530122 3_2:-90214695 Msa0436600:three_prime_UTR
ATTACCCTCTCTTGTTTAGG+GGG 0.530428 3_2:-90214573 Msa0436600:three_prime_UTR
ATTATCCTTTGTACTCTCCT+CGG 0.537754 3_2:+90215092 None:intergenic
TTGTACAGAATTTCCTTACC+CGG 0.560525 3_2:-90214920 Msa0436600:CDS
ACTAACCCTAAGTTCTCCAC+TGG 0.570013 3_2:+90214882 None:intergenic
GATTGGTTGATATCTTGAAG+GGG 0.636271 3_2:+90214544 None:intergenic
CAGTGCCGAGGAGAGTACAA+AGG 0.636436 3_2:-90215097 Msa0436600:CDS
GTAGCCAAGAAAGTGCAAGA+TGG 0.652351 3_2:-90215000 Msa0436600:CDS
TGGTCCGTATTAGTAAATCC+GGG 0.652721 3_2:+90214902 None:intergenic
AAGTATGATAGCCAGTGCCG+AGG 0.667919 3_2:-90215109 Msa0436600:CDS
GATTTACTAATACGGACCAG+TGG 0.708808 3_2:-90214898 Msa0436600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAAATATTATTGAAA+AGG - chr3_2:90215129-90215148 Msa0436600:CDS 10.0%
!! AAATGAAAATATTATTGAAA+AGG - chr3_2:90215129-90215148 Msa0436600:CDS 10.0%
!!! TTTTCTTTAATAGAAAACTT+TGG - chr3_2:90215260-90215279 Msa0436600:intron 15.0%
!!! TTTGTATATTACATTTTGAT+TGG + chr3_2:90215561-90215580 None:intergenic 15.0%
!!! TTTTCTTTAATAGAAAACTT+TGG - chr3_2:90215260-90215279 Msa0436600:intron 15.0%
!!! TTTGTATATTACATTTTGAT+TGG + chr3_2:90215561-90215580 None:intergenic 15.0%
!!! AATATGTCACTTAATATAAG+GGG + chr3_2:90214868-90214887 None:intergenic 20.0%
!!! GAATATGTCACTTAATATAA+GGG + chr3_2:90214869-90214888 None:intergenic 20.0%
!!! TGAATATGTCACTTAATATA+AGG + chr3_2:90214870-90214889 None:intergenic 20.0%
!!! AAGTCTTATTGTATTTATTG+TGG - chr3_2:90215440-90215459 Msa0436600:intron 20.0%
!!! TTGTTTTGAGAAAATTATTG+TGG - chr3_2:90215468-90215487 Msa0436600:intron 20.0%
!!! AATATGTCACTTAATATAAG+GGG + chr3_2:90214868-90214887 None:intergenic 20.0%
!!! GAATATGTCACTTAATATAA+GGG + chr3_2:90214869-90214888 None:intergenic 20.0%
!!! TGAATATGTCACTTAATATA+AGG + chr3_2:90214870-90214889 None:intergenic 20.0%
!!! AAGTCTTATTGTATTTATTG+TGG - chr3_2:90215440-90215459 Msa0436600:intron 20.0%
!!! TTGTTTTGAGAAAATTATTG+TGG - chr3_2:90215468-90215487 Msa0436600:intron 20.0%
! ACTTAATATAAGGGGAAAAA+AGG + chr3_2:90214533-90214552 None:intergenic 25.0%
! GTAAGATCACTTAATATAAG+GGG + chr3_2:90214541-90214560 None:intergenic 25.0%
! CGTAAGATCACTTAATATAA+GGG + chr3_2:90214542-90214561 None:intergenic 25.0%
! ACGTAAGATCACTTAATATA+AGG + chr3_2:90214543-90214562 None:intergenic 25.0%
! CTTAATATAAGGGGAAAAAA+AGG + chr3_2:90214532-90214551 None:intergenic 25.0%
!! ATCATACTTTTCAATGACTT+GGG + chr3_2:90214965-90214984 None:intergenic 25.0%
!! TATCATACTTTTCAATGACT+TGG + chr3_2:90214966-90214985 None:intergenic 25.0%
!!! TACCAAATTCCATCTTATTT+TGG - chr3_2:90215015-90215034 Msa0436600:CDS 25.0%
!! TAATTTCTTGTTATGGCAAT+TGG - chr3_2:90215225-90215244 Msa0436600:intron 25.0%
!!! TCTATTTTGGAATGAAGTTA+AGG + chr3_2:90215317-90215336 None:intergenic 25.0%
! CATATTGGAGAATAAGTATA+TGG + chr3_2:90215373-90215392 None:intergenic 25.0%
! CATATACTTATTCTCCAATA+TGG - chr3_2:90215371-90215390 Msa0436600:intron 25.0%
! AATAAATACCACAACCATAT+TGG + chr3_2:90215388-90215407 None:intergenic 25.0%
! AAATTATTGTGGCATACTTA+TGG - chr3_2:90215479-90215498 Msa0436600:intron 25.0%
! ACTTAATATAAGGGGAAAAA+AGG + chr3_2:90214533-90214552 None:intergenic 25.0%
! GTAAGATCACTTAATATAAG+GGG + chr3_2:90214541-90214560 None:intergenic 25.0%
! CGTAAGATCACTTAATATAA+GGG + chr3_2:90214542-90214561 None:intergenic 25.0%
! ACGTAAGATCACTTAATATA+AGG + chr3_2:90214543-90214562 None:intergenic 25.0%
! CTTAATATAAGGGGAAAAAA+AGG + chr3_2:90214532-90214551 None:intergenic 25.0%
!! ATCATACTTTTCAATGACTT+GGG + chr3_2:90214965-90214984 None:intergenic 25.0%
!! TATCATACTTTTCAATGACT+TGG + chr3_2:90214966-90214985 None:intergenic 25.0%
!!! TACCAAATTCCATCTTATTT+TGG - chr3_2:90215015-90215034 Msa0436600:CDS 25.0%
!! TAATTTCTTGTTATGGCAAT+TGG - chr3_2:90215225-90215244 Msa0436600:intron 25.0%
!!! TCTATTTTGGAATGAAGTTA+AGG + chr3_2:90215317-90215336 None:intergenic 25.0%
! CATATTGGAGAATAAGTATA+TGG + chr3_2:90215373-90215392 None:intergenic 25.0%
! CATATACTTATTCTCCAATA+TGG - chr3_2:90215371-90215390 Msa0436600:intron 25.0%
! AATAAATACCACAACCATAT+TGG + chr3_2:90215388-90215407 None:intergenic 25.0%
! AAATTATTGTGGCATACTTA+TGG - chr3_2:90215479-90215498 Msa0436600:intron 25.0%
TACCTCTAATGACAAAGTAA+TGG + chr3_2:90214590-90214609 None:intergenic 30.0%
ACAAATAACCAATGTGAGTT+GGG + chr3_2:90214705-90214724 None:intergenic 30.0%
AACAAATAACCAATGTGAGT+TGG + chr3_2:90214706-90214725 None:intergenic 30.0%
AACACCATTTGCTTTGTAAT+AGG - chr3_2:90214897-90214916 Msa0436600:CDS 30.0%
ACACCATTTGCTTTGTAATA+GGG - chr3_2:90214898-90214917 Msa0436600:CDS 30.0%
GGAATTCAAATATCTGTGAT+TGG - chr3_2:90214923-90214942 Msa0436600:CDS 30.0%
! TCATACTTTTCAATGACTTG+GGG + chr3_2:90214964-90214983 None:intergenic 30.0%
TGCCAAAATAAGATGGAATT+TGG + chr3_2:90215020-90215039 None:intergenic 30.0%
! GGGTTAGTAATTTCTTGTTA+TGG - chr3_2:90215218-90215237 Msa0436600:intron 30.0%
TATGGTTGTGGTATTTATTG+TGG - chr3_2:90215389-90215408 Msa0436600:intron 30.0%
ATGGTTGTGGTATTTATTGT+GGG - chr3_2:90215390-90215409 Msa0436600:intron 30.0%
! TGATTGGTTGATATCTTGAA+GGG + chr3_2:90215545-90215564 None:intergenic 30.0%
! TTGATTGGTTGATATCTTGA+AGG + chr3_2:90215546-90215565 None:intergenic 30.0%
TACCTCTAATGACAAAGTAA+TGG + chr3_2:90214590-90214609 None:intergenic 30.0%
ACAAATAACCAATGTGAGTT+GGG + chr3_2:90214705-90214724 None:intergenic 30.0%
AACAAATAACCAATGTGAGT+TGG + chr3_2:90214706-90214725 None:intergenic 30.0%
AACACCATTTGCTTTGTAAT+AGG - chr3_2:90214897-90214916 Msa0436600:CDS 30.0%
ACACCATTTGCTTTGTAATA+GGG - chr3_2:90214898-90214917 Msa0436600:CDS 30.0%
GGAATTCAAATATCTGTGAT+TGG - chr3_2:90214923-90214942 Msa0436600:CDS 30.0%
! TCATACTTTTCAATGACTTG+GGG + chr3_2:90214964-90214983 None:intergenic 30.0%
TGCCAAAATAAGATGGAATT+TGG + chr3_2:90215020-90215039 None:intergenic 30.0%
! GGGTTAGTAATTTCTTGTTA+TGG - chr3_2:90215218-90215237 Msa0436600:intron 30.0%
TATGGTTGTGGTATTTATTG+TGG - chr3_2:90215389-90215408 Msa0436600:intron 30.0%
ATGGTTGTGGTATTTATTGT+GGG - chr3_2:90215390-90215409 Msa0436600:intron 30.0%
! TGATTGGTTGATATCTTGAA+GGG + chr3_2:90215545-90215564 None:intergenic 30.0%
! TTGATTGGTTGATATCTTGA+AGG + chr3_2:90215546-90215565 None:intergenic 30.0%
CACCATTACTTTGTCATTAG+AGG - chr3_2:90214585-90214604 Msa0436600:three_prime_UTR 35.0%
CTTCCCTATTACAAAGCAAA+TGG + chr3_2:90214904-90214923 None:intergenic 35.0%
CATTTGCTTTGTAATAGGGA+AGG - chr3_2:90214902-90214921 Msa0436600:CDS 35.0%
ATTATCCTTTGTACTCTCCT+CGG + chr3_2:90214996-90215015 None:intergenic 35.0%
AGCTTACTGCCAAAATAAGA+TGG + chr3_2:90215027-90215046 None:intergenic 35.0%
!! ATTTTGGCAGTAAGCTATAG+TGG - chr3_2:90215031-90215050 Msa0436600:CDS 35.0%
GCAAGATGGCATTATTCATT+TGG - chr3_2:90215099-90215118 Msa0436600:CDS 35.0%
TTGTACAGAATTTCCTTACC+CGG - chr3_2:90215165-90215184 Msa0436600:CDS 35.0%
CTTACCCGGATTTACTAATA+CGG - chr3_2:90215179-90215198 Msa0436600:intron 35.0%
! AGAAAACTTTGGCCAGATTT+TGG - chr3_2:90215271-90215290 Msa0436600:intron 35.0%
AACTCATCCTTTCCAAAATC+TGG + chr3_2:90215286-90215305 None:intergenic 35.0%
! CAAAACGTCTCTGTCTATTT+TGG + chr3_2:90215330-90215349 None:intergenic 35.0%
! CAAAATAGACAGAGACGTTT+TGG - chr3_2:90215328-90215347 Msa0436600:intron 35.0%
CTTATTCTCCAATATGGTTG+TGG - chr3_2:90215377-90215396 Msa0436600:intron 35.0%
! TACATTACCCTCTCTTGTTT+AGG - chr3_2:90215509-90215528 Msa0436600:intron 35.0%
! ACATTACCCTCTCTTGTTTA+GGG - chr3_2:90215510-90215529 Msa0436600:intron 35.0%
! GATTGGTTGATATCTTGAAG+GGG + chr3_2:90215544-90215563 None:intergenic 35.0%
CACCATTACTTTGTCATTAG+AGG - chr3_2:90214585-90214604 Msa0436600:three_prime_UTR 35.0%
CTTCCCTATTACAAAGCAAA+TGG + chr3_2:90214904-90214923 None:intergenic 35.0%
CATTTGCTTTGTAATAGGGA+AGG - chr3_2:90214902-90214921 Msa0436600:CDS 35.0%
ATTATCCTTTGTACTCTCCT+CGG + chr3_2:90214996-90215015 None:intergenic 35.0%
AGCTTACTGCCAAAATAAGA+TGG + chr3_2:90215027-90215046 None:intergenic 35.0%
!! ATTTTGGCAGTAAGCTATAG+TGG - chr3_2:90215031-90215050 Msa0436600:CDS 35.0%
GCAAGATGGCATTATTCATT+TGG - chr3_2:90215099-90215118 Msa0436600:CDS 35.0%
TTGTACAGAATTTCCTTACC+CGG - chr3_2:90215165-90215184 Msa0436600:CDS 35.0%
CTTACCCGGATTTACTAATA+CGG - chr3_2:90215179-90215198 Msa0436600:intron 35.0%
! AGAAAACTTTGGCCAGATTT+TGG - chr3_2:90215271-90215290 Msa0436600:intron 35.0%
AACTCATCCTTTCCAAAATC+TGG + chr3_2:90215286-90215305 None:intergenic 35.0%
! CAAAACGTCTCTGTCTATTT+TGG + chr3_2:90215330-90215349 None:intergenic 35.0%
! CAAAATAGACAGAGACGTTT+TGG - chr3_2:90215328-90215347 Msa0436600:intron 35.0%
CTTATTCTCCAATATGGTTG+TGG - chr3_2:90215377-90215396 Msa0436600:intron 35.0%
! TACATTACCCTCTCTTGTTT+AGG - chr3_2:90215509-90215528 Msa0436600:intron 35.0%
! ACATTACCCTCTCTTGTTTA+GGG - chr3_2:90215510-90215529 Msa0436600:intron 35.0%
! GATTGGTTGATATCTTGAAG+GGG + chr3_2:90215544-90215563 None:intergenic 35.0%
CAATGCTTTGATTCATCGCA+TGG - chr3_2:90214654-90214673 Msa0436600:three_prime_UTR 40.0%
ACTGATTGACATCACATGCT+TGG + chr3_2:90214751-90214770 None:intergenic 40.0%
AATGCCATCTTGCACTTTCT+TGG + chr3_2:90215092-90215111 None:intergenic 40.0%
CGTATTAGTAAATCCGGGTA+AGG + chr3_2:90215181-90215200 None:intergenic 40.0%
TGGTCCGTATTAGTAAATCC+GGG + chr3_2:90215186-90215205 None:intergenic 40.0%
CTGGTCCGTATTAGTAAATC+CGG + chr3_2:90215187-90215206 None:intergenic 40.0%
GATTTACTAATACGGACCAG+TGG - chr3_2:90215187-90215206 Msa0436600:intron 40.0%
!! ACTTTGGCCAGATTTTGGAA+AGG - chr3_2:90215276-90215295 Msa0436600:intron 40.0%
! AATAGACAGAGACGTTTTGG+TGG - chr3_2:90215331-90215350 Msa0436600:intron 40.0%
! CATTACCCTCTCTTGTTTAG+GGG - chr3_2:90215511-90215530 Msa0436600:intron 40.0%
! ATTACCCTCTCTTGTTTAGG+GGG - chr3_2:90215512-90215531 Msa0436600:intron 40.0%
AATACCCCCTAAACAAGAGA+GGG + chr3_2:90215519-90215538 None:intergenic 40.0%
AAATACCCCCTAAACAAGAG+AGG + chr3_2:90215520-90215539 None:intergenic 40.0%
CAATGCTTTGATTCATCGCA+TGG - chr3_2:90214654-90214673 Msa0436600:three_prime_UTR 40.0%
ACTGATTGACATCACATGCT+TGG + chr3_2:90214751-90214770 None:intergenic 40.0%
AATGCCATCTTGCACTTTCT+TGG + chr3_2:90215092-90215111 None:intergenic 40.0%
CGTATTAGTAAATCCGGGTA+AGG + chr3_2:90215181-90215200 None:intergenic 40.0%
TGGTCCGTATTAGTAAATCC+GGG + chr3_2:90215186-90215205 None:intergenic 40.0%
CTGGTCCGTATTAGTAAATC+CGG + chr3_2:90215187-90215206 None:intergenic 40.0%
GATTTACTAATACGGACCAG+TGG - chr3_2:90215187-90215206 Msa0436600:intron 40.0%
!! ACTTTGGCCAGATTTTGGAA+AGG - chr3_2:90215276-90215295 Msa0436600:intron 40.0%
! AATAGACAGAGACGTTTTGG+TGG - chr3_2:90215331-90215350 Msa0436600:intron 40.0%
! CATTACCCTCTCTTGTTTAG+GGG - chr3_2:90215511-90215530 Msa0436600:intron 40.0%
! ATTACCCTCTCTTGTTTAGG+GGG - chr3_2:90215512-90215531 Msa0436600:intron 40.0%
AATACCCCCTAAACAAGAGA+GGG + chr3_2:90215519-90215538 None:intergenic 40.0%
AAATACCCCCTAAACAAGAG+AGG + chr3_2:90215520-90215539 None:intergenic 40.0%
! TGTGAGTTGGGTCTAGCATA+AGG + chr3_2:90214693-90214712 None:intergenic 45.0%
ATGCTAGACCCAACTCACAT+TGG - chr3_2:90214694-90214713 Msa0436600:three_prime_UTR 45.0%
! TGGCTACACTTTTGCATGCT+TGG + chr3_2:90215072-90215091 None:intergenic 45.0%
! GTAGCCAAGAAAGTGCAAGA+TGG - chr3_2:90215085-90215104 Msa0436600:CDS 45.0%
ACTAACCCTAAGTTCTCCAC+TGG + chr3_2:90215206-90215225 None:intergenic 45.0%
! TGTGAGTTGGGTCTAGCATA+AGG + chr3_2:90214693-90214712 None:intergenic 45.0%
ATGCTAGACCCAACTCACAT+TGG - chr3_2:90214694-90214713 Msa0436600:three_prime_UTR 45.0%
! TGGCTACACTTTTGCATGCT+TGG + chr3_2:90215072-90215091 None:intergenic 45.0%
! GTAGCCAAGAAAGTGCAAGA+TGG - chr3_2:90215085-90215104 Msa0436600:CDS 45.0%
ACTAACCCTAAGTTCTCCAC+TGG + chr3_2:90215206-90215225 None:intergenic 45.0%
AAGTATGATAGCCAGTGCCG+AGG - chr3_2:90214976-90214995 Msa0436600:CDS 50.0%
TACGGACCAGTGGAGAACTT+AGG - chr3_2:90215197-90215216 Msa0436600:intron 50.0%
ACGGACCAGTGGAGAACTTA+GGG - chr3_2:90215198-90215217 Msa0436600:intron 50.0%
AAGTATGATAGCCAGTGCCG+AGG - chr3_2:90214976-90214995 Msa0436600:CDS 50.0%
TACGGACCAGTGGAGAACTT+AGG - chr3_2:90215197-90215216 Msa0436600:intron 50.0%
ACGGACCAGTGGAGAACTTA+GGG - chr3_2:90215198-90215217 Msa0436600:intron 50.0%
CTTTGTACTCTCCTCGGCAC+TGG + chr3_2:90214990-90215009 None:intergenic 55.0%
! CAGTGCCGAGGAGAGTACAA+AGG - chr3_2:90214988-90215007 Msa0436600:CDS 55.0%
CTTTGTACTCTCCTCGGCAC+TGG + chr3_2:90214990-90215009 None:intergenic 55.0%
! CAGTGCCGAGGAGAGTACAA+AGG - chr3_2:90214988-90215007 Msa0436600:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 90214503 90215604 90214503 ID=Msa0436600;Name=Msa0436600
chr3_2 mRNA 90214503 90215604 90214503 ID=Msa0436600-mRNA-1;Parent=Msa0436600;Name=Msa0436600-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0.5|0.5|1|1|2|241|149
chr3_2 exon 90214503 90215188 90214503 ID=Msa0436600-mRNA-1:exon:26823;Parent=Msa0436600-mRNA-1
chr3_2 exon 90215600 90215604 90215600 ID=Msa0436600-mRNA-1:exon:26822;Parent=Msa0436600-mRNA-1
chr3_2 CDS 90215600 90215604 90215600 ID=Msa0436600-mRNA-1:cds;Parent=Msa0436600-mRNA-1
chr3_2 CDS 90214744 90215188 90214744 ID=Msa0436600-mRNA-1:cds;Parent=Msa0436600-mRNA-1
chr3_2 three_prime_UTR 90214503 90214743 90214503 ID=Msa0436600-mRNA-1:three_prime_utr;Parent=Msa0436600-mRNA-1
Gene Sequence

>Msa0436600

ATGACGGAAGGAATTCAAATATCTGTGATTGGAGATACATCAAAGCTCCCCAAGTCATTGAAAAGTATGATAGCCAGTGCCGAGGAGAGTACAAAGGATAATACCAAATTCCATCTTATTTTGGCAGTAAGCTATAGTGGAAAATACGATTTAGTCCAAGCATGCAAAAGTGTAGCCAAGAAAGTGCAAGATGGCATTATTCATTTGGAAGACATAAATGAAAATATTATTGAAAAGGAATTAGAAACTAATTGTACAGAATTTCCTTACCCGGATTTACTAATACGGACCAGTGGAGAACTTAGGGTTAGTAATTTCTTGTTATGGCAATTGGCATATACAGAACTTTTCTTTAATAGAAAACTTTGGCCAGATTTTGGAAAGGATGAGTTTGTAAAAGCCTTAACTTCATTCCAAAATAGACAGAGACGTTTTGGTGGACGATATTAA

Protein sequence

>Msa0436600

MTEGIQISVIGDTSKLPKSLKSMIASAEESTKDNTKFHLILAVSYSGKYDLVQACKSVAKKVQDGIIHLEDINENIIEKELETNCTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFNRKLWPDFGKDEFVKALTSFQNRQRRFGGRY*