AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0436610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436610 MtrunA17_Chr5g0429771 87.273 165 18 2 1 164 1 163 1.34e-100 292
Msa0436610 MtrunA17_Chr5g0429791 47.500 160 82 1 1 158 1 160 1.33e-44 145
Msa0436610 MtrunA17_Chr5g0429821 50.420 119 46 5 1 109 1 116 3.91e-25 93.6
Msa0436610 MtrunA17_Chr8g0370491 46.341 82 44 0 74 155 28 109 6.26e-18 79.7
Msa0436610 MtrunA17_Chr1g0199941 45.122 82 45 0 74 155 28 109 9.42e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436610 AT5G58770.1 64.516 93 33 0 75 167 73 165 1.00e-40 139
Msa0436610 AT5G58782.1 53.000 100 47 0 68 167 46 145 4.25e-30 111
Msa0436610 AT5G58782.2 53.000 100 47 0 68 167 64 163 4.51e-30 112
Msa0436610 AT5G58780.1 55.914 93 41 0 72 164 63 155 7.63e-29 108
Msa0436610 AT2G23400.2 40.602 133 78 1 35 167 27 158 1.74e-28 105
Msa0436610 AT2G23400.1 40.602 133 78 1 35 167 27 158 2.27e-27 104
Msa0436610 AT2G23410.1 49.474 95 47 1 74 167 65 159 8.52e-25 97.8
Msa0436610 AT5G58784.1 48.889 90 46 0 78 167 69 158 1.97e-24 97.1
Msa0436610 AT2G17570.1 47.561 82 43 0 79 160 39 120 1.54e-18 80.9

Find 58 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTACTTGTAATAAAATA+TGG 0.272447 3_2:+90217409 None:intergenic
TTGCATTCTCAACCGATAAT+TGG 0.274745 3_2:-90217660 Msa0436610:CDS
TAAGCATGTGGCGGTGATTA+TGG 0.306230 3_2:-90217809 Msa0436610:CDS
CTCATTCTCGATGTTCTTCA+AGG 0.323586 3_2:-90217957 Msa0436610:CDS
GTGTTATAGTTGGGGAATAA+AGG 0.324367 3_2:-90217695 Msa0436610:CDS
ATGTTAGTAATAATGTGAAT+AGG 0.356411 3_2:+90218069 None:intergenic
TACTACTAACCACGTTCATC+GGG 0.369616 3_2:-90217998 Msa0436610:CDS
TTCAGAAATGGAGCCATTGC+CGG 0.378511 3_2:-90217857 Msa0436610:CDS
ATGGGAGGTGGGCAAAGATG+AGG 0.382978 3_2:-90217780 Msa0436610:CDS
GGTGAGGTTGTGTTATAGTT+GGG 0.400487 3_2:-90217704 Msa0436610:CDS
TGTTAGTAATAATGTGAATA+GGG 0.409348 3_2:+90218070 None:intergenic
CTTAGGTCGAATCCAATTAT+CGG 0.425110 3_2:+90217648 None:intergenic
GATTCGGCTAATGTGGGAAA+TGG 0.442388 3_2:+90218104 None:intergenic
CTACTACTAACCACGTTCAT+CGG 0.449783 3_2:-90217999 Msa0436610:CDS
TGGTGAGGTTGTGTTATAGT+TGG 0.451686 3_2:-90217705 Msa0436610:CDS
CGGTGATTATGGACGGGAAT+GGG 0.455731 3_2:-90217798 Msa0436610:CDS
TGGGAGGTGGGCAAAGATGA+GGG 0.455809 3_2:-90217779 Msa0436610:CDS
GGGAGGTGGGCAAAGATGAG+GGG 0.456021 3_2:-90217778 Msa0436610:CDS
TAGTGATGCATTGATATTGT+AGG 0.462700 3_2:-90217231 Msa0436610:three_prime_UTR
GCTTGCAGTTCCTCCGGCAA+TGG 0.479704 3_2:+90217844 None:intergenic
GGAGGTGGGCAAAGATGAGG+GGG 0.479875 3_2:-90217777 Msa0436610:CDS
CGATAATTGGATTCGACCTA+AGG 0.480618 3_2:-90217647 Msa0436610:intron
CGCGGCAATAGTGACGCGTT+TGG 0.485624 3_2:+90217927 None:intergenic
CCGTCTGCGGGTCATGTAGC+CGG 0.489572 3_2:-90217748 Msa0436610:CDS
TTATGGACGGGAATGGGAGG+TGG 0.493196 3_2:-90217792 Msa0436610:CDS
TGATAACGATTCGGCTAATG+TGG 0.497047 3_2:+90218097 None:intergenic
AGCTCCGCTTGCAGTTCCTC+CGG 0.507703 3_2:+90217838 None:intergenic
GCGGTGATTATGGACGGGAA+TGG 0.517607 3_2:-90217799 Msa0436610:CDS
TAGGGTTAGTGATAACGATT+CGG 0.519737 3_2:+90218088 None:intergenic
CGGCTACATGACCCGCAGAC+GGG 0.532986 3_2:+90217749 None:intergenic
AATTTATTGTTCTTTCAAAG+AGG 0.535873 3_2:+90217494 None:intergenic
GTGAGGTTGTGTTATAGTTG+GGG 0.555675 3_2:-90217703 Msa0436610:CDS
AGTGATGCATTGATATTGTA+GGG 0.556590 3_2:-90217230 Msa0436610:three_prime_UTR
ATAATCACCGCCACATGCTT+AGG 0.560502 3_2:+90217811 None:intergenic
TATGGACGGGAATGGGAGGT+GGG 0.565954 3_2:-90217791 Msa0436610:CDS
ATGTGGCGGTGATTATGGAC+GGG 0.576395 3_2:-90217804 Msa0436610:CDS
TGTAAAGTCGTTGAGAAGGA+TGG 0.579930 3_2:-90217725 Msa0436610:CDS
GGCTACATGACCCGCAGACG+GGG 0.586275 3_2:+90217750 None:intergenic
CATGTGGCGGTGATTATGGA+CGG 0.587809 3_2:-90217805 Msa0436610:CDS
CGGCTAATGTGGGAAATGGA+AGG 0.592085 3_2:+90218108 None:intergenic
CTGAAATTGAAGCACTAGAG+AGG 0.594486 3_2:-90217471 Msa0436610:CDS
ATTGCCGGAGGAACTGCAAG+CGG 0.596025 3_2:-90217842 Msa0436610:CDS
TGATTATGGACGGGAATGGG+AGG 0.615382 3_2:-90217795 Msa0436610:CDS
CCGGCTACATGACCCGCAGA+CGG 0.616650 3_2:+90217748 None:intergenic
CAAACGCGTCACTATTGCCG+CGG 0.621205 3_2:-90217926 Msa0436610:CDS
CCGGTGTAAAGTCGTTGAGA+AGG 0.624155 3_2:-90217729 Msa0436610:CDS
AGTCGTTGAGAAGGATGGTG+AGG 0.625194 3_2:-90217720 Msa0436610:CDS
GGAGCTGATGCCTAAGCATG+TGG 0.626089 3_2:-90217821 Msa0436610:CDS
GATAACGATTCGGCTAATGT+GGG 0.631394 3_2:+90218098 None:intergenic
AGAAATGGAGCCATTGCCGG+AGG 0.635367 3_2:-90217854 Msa0436610:CDS
GGTGGATGGGGAAACTTCCG+TGG 0.636917 3_2:-90217890 Msa0436610:CDS
CCTTCTCAACGACTTTACAC+CGG 0.638232 3_2:+90217729 None:intergenic
CTACTAACCACGTTCATCGG+GGG 0.656776 3_2:-90217996 Msa0436610:CDS
CACCTGATCCTGAAAAGCCG+CGG 0.664185 3_2:+90217909 None:intergenic
GCTACATGACCCGCAGACGG+GGG 0.669075 3_2:+90217751 None:intergenic
CTAATGTGGGAAATGGAAGG+TGG 0.674900 3_2:+90218111 None:intergenic
ACTACTAACCACGTTCATCG+GGG 0.694697 3_2:-90217997 Msa0436610:CDS
GCTGATGCCTAAGCATGTGG+CGG 0.712093 3_2:-90217818 Msa0436610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTCTTAGTTTTGATTAT+TGG - chr3_2:90217734-90217753 Msa0436610:CDS 15.0%
!! AAACTACTTGTAATAAAATA+TGG + chr3_2:90217887-90217906 None:intergenic 15.0%
!!! TTATTCTTAGTTTTGATTAT+TGG - chr3_2:90217734-90217753 Msa0436610:CDS 15.0%
!! AAACTACTTGTAATAAAATA+TGG + chr3_2:90217887-90217906 None:intergenic 15.0%
!! TGTTAGTAATAATGTGAATA+GGG + chr3_2:90217226-90217245 None:intergenic 20.0%
!! ATGTTAGTAATAATGTGAAT+AGG + chr3_2:90217227-90217246 None:intergenic 20.0%
!! AATTTATTGTTCTTTCAAAG+AGG + chr3_2:90217802-90217821 None:intergenic 20.0%
!! TGTTAGTAATAATGTGAATA+GGG + chr3_2:90217226-90217245 None:intergenic 20.0%
!! ATGTTAGTAATAATGTGAAT+AGG + chr3_2:90217227-90217246 None:intergenic 20.0%
!! AATTTATTGTTCTTTCAAAG+AGG + chr3_2:90217802-90217821 None:intergenic 20.0%
!!! GTTATTAGAGTTTTATCTAG+TGG + chr3_2:90217272-90217291 None:intergenic 25.0%
! AGTGAAATTAAAATGACCTT+AGG + chr3_2:90217665-90217684 None:intergenic 25.0%
! ATGACATTAGTTATTGATAG+TGG - chr3_2:90217711-90217730 Msa0436610:CDS 25.0%
!!! GTTATTAGAGTTTTATCTAG+TGG + chr3_2:90217272-90217291 None:intergenic 25.0%
! AGTGAAATTAAAATGACCTT+AGG + chr3_2:90217665-90217684 None:intergenic 25.0%
! ATGACATTAGTTATTGATAG+TGG - chr3_2:90217711-90217730 Msa0436610:CDS 25.0%
!!! GTTTTGATTATTGGTGTTAC+TGG - chr3_2:90217743-90217762 Msa0436610:CDS 30.0%
! TAGTGATGCATTGATATTGT+AGG - chr3_2:90218062-90218081 Msa0436610:exon 30.0%
! AGTGATGCATTGATATTGTA+GGG - chr3_2:90218063-90218082 Msa0436610:exon 30.0%
!!! GTTTTGATTATTGGTGTTAC+TGG - chr3_2:90217743-90217762 Msa0436610:CDS 30.0%
! TAGTGATGCATTGATATTGT+AGG - chr3_2:90218062-90218081 Msa0436610:exon 30.0%
! AGTGATGCATTGATATTGTA+GGG - chr3_2:90218063-90218082 Msa0436610:exon 30.0%
! TAGGGTTAGTGATAACGATT+CGG + chr3_2:90217208-90217227 None:intergenic 35.0%
!! AGAGTTTTATCTAGTGGCAT+GGG + chr3_2:90217266-90217285 None:intergenic 35.0%
!! TAGAGTTTTATCTAGTGGCA+TGG + chr3_2:90217267-90217286 None:intergenic 35.0%
! TTCTGAAAAATCTTCGTCCA+CGG + chr3_2:90217423-90217442 None:intergenic 35.0%
!! GGACGAAGATTTTTCAGAAA+TGG - chr3_2:90217424-90217443 Msa0436610:exon 35.0%
GTGTTATAGTTGGGGAATAA+AGG - chr3_2:90217598-90217617 Msa0436610:intron 35.0%
TTGCATTCTCAACCGATAAT+TGG - chr3_2:90217633-90217652 Msa0436610:intron 35.0%
CTTAGGTCGAATCCAATTAT+CGG + chr3_2:90217648-90217667 None:intergenic 35.0%
! TAGGGTTAGTGATAACGATT+CGG + chr3_2:90217208-90217227 None:intergenic 35.0%
!! AGAGTTTTATCTAGTGGCAT+GGG + chr3_2:90217266-90217285 None:intergenic 35.0%
!! TAGAGTTTTATCTAGTGGCA+TGG + chr3_2:90217267-90217286 None:intergenic 35.0%
! TTCTGAAAAATCTTCGTCCA+CGG + chr3_2:90217423-90217442 None:intergenic 35.0%
!! GGACGAAGATTTTTCAGAAA+TGG - chr3_2:90217424-90217443 Msa0436610:exon 35.0%
GTGTTATAGTTGGGGAATAA+AGG - chr3_2:90217598-90217617 Msa0436610:intron 35.0%
TTGCATTCTCAACCGATAAT+TGG - chr3_2:90217633-90217652 Msa0436610:intron 35.0%
CTTAGGTCGAATCCAATTAT+CGG + chr3_2:90217648-90217667 None:intergenic 35.0%
! GATAACGATTCGGCTAATGT+GGG + chr3_2:90217198-90217217 None:intergenic 40.0%
! TGATAACGATTCGGCTAATG+TGG + chr3_2:90217199-90217218 None:intergenic 40.0%
CTACTACTAACCACGTTCAT+CGG - chr3_2:90217294-90217313 Msa0436610:three_prime_UTR 40.0%
TACTACTAACCACGTTCATC+GGG - chr3_2:90217295-90217314 Msa0436610:three_prime_UTR 40.0%
CTCATTCTCGATGTTCTTCA+AGG - chr3_2:90217336-90217355 Msa0436610:three_prime_UTR 40.0%
TGTAAAGTCGTTGAGAAGGA+TGG - chr3_2:90217568-90217587 Msa0436610:intron 40.0%
TGGTGAGGTTGTGTTATAGT+TGG - chr3_2:90217588-90217607 Msa0436610:intron 40.0%
GGTGAGGTTGTGTTATAGTT+GGG - chr3_2:90217589-90217608 Msa0436610:intron 40.0%
GTGAGGTTGTGTTATAGTTG+GGG - chr3_2:90217590-90217609 Msa0436610:intron 40.0%
CGATAATTGGATTCGACCTA+AGG - chr3_2:90217646-90217665 Msa0436610:intron 40.0%
! CTGAAATTGAAGCACTAGAG+AGG - chr3_2:90217822-90217841 Msa0436610:CDS 40.0%
! GATAACGATTCGGCTAATGT+GGG + chr3_2:90217198-90217217 None:intergenic 40.0%
! TGATAACGATTCGGCTAATG+TGG + chr3_2:90217199-90217218 None:intergenic 40.0%
CTACTACTAACCACGTTCAT+CGG - chr3_2:90217294-90217313 Msa0436610:three_prime_UTR 40.0%
TACTACTAACCACGTTCATC+GGG - chr3_2:90217295-90217314 Msa0436610:three_prime_UTR 40.0%
CTCATTCTCGATGTTCTTCA+AGG - chr3_2:90217336-90217355 Msa0436610:three_prime_UTR 40.0%
TGTAAAGTCGTTGAGAAGGA+TGG - chr3_2:90217568-90217587 Msa0436610:intron 40.0%
TGGTGAGGTTGTGTTATAGT+TGG - chr3_2:90217588-90217607 Msa0436610:intron 40.0%
GGTGAGGTTGTGTTATAGTT+GGG - chr3_2:90217589-90217608 Msa0436610:intron 40.0%
GTGAGGTTGTGTTATAGTTG+GGG - chr3_2:90217590-90217609 Msa0436610:intron 40.0%
CGATAATTGGATTCGACCTA+AGG - chr3_2:90217646-90217665 Msa0436610:intron 40.0%
! CTGAAATTGAAGCACTAGAG+AGG - chr3_2:90217822-90217841 Msa0436610:CDS 40.0%
CTAATGTGGGAAATGGAAGG+TGG + chr3_2:90217185-90217204 None:intergenic 45.0%
GATTCGGCTAATGTGGGAAA+TGG + chr3_2:90217192-90217211 None:intergenic 45.0%
ACTACTAACCACGTTCATCG+GGG - chr3_2:90217296-90217315 Msa0436610:three_prime_UTR 45.0%
!! CTTTTCAGGATCAGGTGGAT+GGG - chr3_2:90217390-90217409 Msa0436610:three_prime_UTR 45.0%
!! TTTTCAGGATCAGGTGGATG+GGG - chr3_2:90217391-90217410 Msa0436610:three_prime_UTR 45.0%
TTCAGAAATGGAGCCATTGC+CGG - chr3_2:90217436-90217455 Msa0436610:exon 45.0%
ATAATCACCGCCACATGCTT+AGG + chr3_2:90217485-90217504 None:intergenic 45.0%
TAAGCATGTGGCGGTGATTA+TGG - chr3_2:90217484-90217503 Msa0436610:CDS 45.0%
CCTTCTCAACGACTTTACAC+CGG + chr3_2:90217567-90217586 None:intergenic 45.0%
!! TGGTGTTACTGGTGATATGC+AGG - chr3_2:90217754-90217773 Msa0436610:CDS 45.0%
TGTTACTGGTGATATGCAGG+TGG - chr3_2:90217757-90217776 Msa0436610:CDS 45.0%
GGGAAATGGAAGGTGGTTAT+TGG + chr3_2:90217178-90217197 None:intergenic 45.0%
CTAATGTGGGAAATGGAAGG+TGG + chr3_2:90217185-90217204 None:intergenic 45.0%
GATTCGGCTAATGTGGGAAA+TGG + chr3_2:90217192-90217211 None:intergenic 45.0%
ACTACTAACCACGTTCATCG+GGG - chr3_2:90217296-90217315 Msa0436610:three_prime_UTR 45.0%
!! CTTTTCAGGATCAGGTGGAT+GGG - chr3_2:90217390-90217409 Msa0436610:three_prime_UTR 45.0%
!! TTTTCAGGATCAGGTGGATG+GGG - chr3_2:90217391-90217410 Msa0436610:three_prime_UTR 45.0%
TTCAGAAATGGAGCCATTGC+CGG - chr3_2:90217436-90217455 Msa0436610:exon 45.0%
ATAATCACCGCCACATGCTT+AGG + chr3_2:90217485-90217504 None:intergenic 45.0%
TAAGCATGTGGCGGTGATTA+TGG - chr3_2:90217484-90217503 Msa0436610:CDS 45.0%
CCTTCTCAACGACTTTACAC+CGG + chr3_2:90217567-90217586 None:intergenic 45.0%
!! TGGTGTTACTGGTGATATGC+AGG - chr3_2:90217754-90217773 Msa0436610:CDS 45.0%
TGTTACTGGTGATATGCAGG+TGG - chr3_2:90217757-90217776 Msa0436610:CDS 45.0%
CGGCTAATGTGGGAAATGGA+AGG + chr3_2:90217188-90217207 None:intergenic 50.0%
CTACTAACCACGTTCATCGG+GGG - chr3_2:90217297-90217316 Msa0436610:three_prime_UTR 50.0%
!! GCTTTTCAGGATCAGGTGGA+TGG - chr3_2:90217389-90217408 Msa0436610:three_prime_UTR 50.0%
CATGTGGCGGTGATTATGGA+CGG - chr3_2:90217488-90217507 Msa0436610:CDS 50.0%
ATGTGGCGGTGATTATGGAC+GGG - chr3_2:90217489-90217508 Msa0436610:CDS 50.0%
CGGTGATTATGGACGGGAAT+GGG - chr3_2:90217495-90217514 Msa0436610:CDS 50.0%
TGATTATGGACGGGAATGGG+AGG - chr3_2:90217498-90217517 Msa0436610:CDS 50.0%
CCGGTGTAAAGTCGTTGAGA+AGG - chr3_2:90217564-90217583 Msa0436610:intron 50.0%
AGTCGTTGAGAAGGATGGTG+AGG - chr3_2:90217573-90217592 Msa0436610:intron 50.0%
CGGCTAATGTGGGAAATGGA+AGG + chr3_2:90217188-90217207 None:intergenic 50.0%
CTACTAACCACGTTCATCGG+GGG - chr3_2:90217297-90217316 Msa0436610:three_prime_UTR 50.0%
!! GCTTTTCAGGATCAGGTGGA+TGG - chr3_2:90217389-90217408 Msa0436610:three_prime_UTR 50.0%
CATGTGGCGGTGATTATGGA+CGG - chr3_2:90217488-90217507 Msa0436610:CDS 50.0%
ATGTGGCGGTGATTATGGAC+GGG - chr3_2:90217489-90217508 Msa0436610:CDS 50.0%
CGGTGATTATGGACGGGAAT+GGG - chr3_2:90217495-90217514 Msa0436610:CDS 50.0%
TGATTATGGACGGGAATGGG+AGG - chr3_2:90217498-90217517 Msa0436610:CDS 50.0%
CCGGTGTAAAGTCGTTGAGA+AGG - chr3_2:90217564-90217583 Msa0436610:intron 50.0%
AGTCGTTGAGAAGGATGGTG+AGG - chr3_2:90217573-90217592 Msa0436610:intron 50.0%
CAAACGCGTCACTATTGCCG+CGG - chr3_2:90217367-90217386 Msa0436610:three_prime_UTR 55.0%
! CACTATTGCCGCGGCTTTTC+AGG - chr3_2:90217376-90217395 Msa0436610:three_prime_UTR 55.0%
CACCTGATCCTGAAAAGCCG+CGG + chr3_2:90217387-90217406 None:intergenic 55.0%
AGAAATGGAGCCATTGCCGG+AGG - chr3_2:90217439-90217458 Msa0436610:exon 55.0%
ATTGCCGGAGGAACTGCAAG+CGG - chr3_2:90217451-90217470 Msa0436610:CDS 55.0%
GGAGCTGATGCCTAAGCATG+TGG - chr3_2:90217472-90217491 Msa0436610:CDS 55.0%
GCTGATGCCTAAGCATGTGG+CGG - chr3_2:90217475-90217494 Msa0436610:CDS 55.0%
GCGGTGATTATGGACGGGAA+TGG - chr3_2:90217494-90217513 Msa0436610:CDS 55.0%
TTATGGACGGGAATGGGAGG+TGG - chr3_2:90217501-90217520 Msa0436610:CDS 55.0%
TATGGACGGGAATGGGAGGT+GGG - chr3_2:90217502-90217521 Msa0436610:CDS 55.0%
ATGGGAGGTGGGCAAAGATG+AGG - chr3_2:90217513-90217532 Msa0436610:CDS 55.0%
TGGGAGGTGGGCAAAGATGA+GGG - chr3_2:90217514-90217533 Msa0436610:CDS 55.0%
CAAACGCGTCACTATTGCCG+CGG - chr3_2:90217367-90217386 Msa0436610:three_prime_UTR 55.0%
! CACTATTGCCGCGGCTTTTC+AGG - chr3_2:90217376-90217395 Msa0436610:three_prime_UTR 55.0%
CACCTGATCCTGAAAAGCCG+CGG + chr3_2:90217387-90217406 None:intergenic 55.0%
AGAAATGGAGCCATTGCCGG+AGG - chr3_2:90217439-90217458 Msa0436610:exon 55.0%
ATTGCCGGAGGAACTGCAAG+CGG - chr3_2:90217451-90217470 Msa0436610:CDS 55.0%
GGAGCTGATGCCTAAGCATG+TGG - chr3_2:90217472-90217491 Msa0436610:CDS 55.0%
GCTGATGCCTAAGCATGTGG+CGG - chr3_2:90217475-90217494 Msa0436610:CDS 55.0%
GCGGTGATTATGGACGGGAA+TGG - chr3_2:90217494-90217513 Msa0436610:CDS 55.0%
TTATGGACGGGAATGGGAGG+TGG - chr3_2:90217501-90217520 Msa0436610:CDS 55.0%
TATGGACGGGAATGGGAGGT+GGG - chr3_2:90217502-90217521 Msa0436610:CDS 55.0%
ATGGGAGGTGGGCAAAGATG+AGG - chr3_2:90217513-90217532 Msa0436610:CDS 55.0%
TGGGAGGTGGGCAAAGATGA+GGG - chr3_2:90217514-90217533 Msa0436610:CDS 55.0%
GAGTGATCCCCCGATGAACG+TGG + chr3_2:90217307-90217326 None:intergenic 60.0%
CGCGGCAATAGTGACGCGTT+TGG + chr3_2:90217369-90217388 None:intergenic 60.0%
!! TGCCGCGGCTTTTCAGGATC+AGG - chr3_2:90217382-90217401 Msa0436610:three_prime_UTR 60.0%
!! CGCGGCTTTTCAGGATCAGG+TGG - chr3_2:90217385-90217404 Msa0436610:three_prime_UTR 60.0%
GGTGGATGGGGAAACTTCCG+TGG - chr3_2:90217403-90217422 Msa0436610:three_prime_UTR 60.0%
GCTTGCAGTTCCTCCGGCAA+TGG + chr3_2:90217452-90217471 None:intergenic 60.0%
AGCTCCGCTTGCAGTTCCTC+CGG + chr3_2:90217458-90217477 None:intergenic 60.0%
GGGAGGTGGGCAAAGATGAG+GGG - chr3_2:90217515-90217534 Msa0436610:CDS 60.0%
GGAGGTGGGCAAAGATGAGG+GGG - chr3_2:90217516-90217535 Msa0436610:CDS 60.0%
GAGTGATCCCCCGATGAACG+TGG + chr3_2:90217307-90217326 None:intergenic 60.0%
CGCGGCAATAGTGACGCGTT+TGG + chr3_2:90217369-90217388 None:intergenic 60.0%
!! TGCCGCGGCTTTTCAGGATC+AGG - chr3_2:90217382-90217401 Msa0436610:three_prime_UTR 60.0%
!! CGCGGCTTTTCAGGATCAGG+TGG - chr3_2:90217385-90217404 Msa0436610:three_prime_UTR 60.0%
GGTGGATGGGGAAACTTCCG+TGG - chr3_2:90217403-90217422 Msa0436610:three_prime_UTR 60.0%
GCTTGCAGTTCCTCCGGCAA+TGG + chr3_2:90217452-90217471 None:intergenic 60.0%
AGCTCCGCTTGCAGTTCCTC+CGG + chr3_2:90217458-90217477 None:intergenic 60.0%
GGGAGGTGGGCAAAGATGAG+GGG - chr3_2:90217515-90217534 Msa0436610:CDS 60.0%
GGAGGTGGGCAAAGATGAGG+GGG - chr3_2:90217516-90217535 Msa0436610:CDS 60.0%
GCTACATGACCCGCAGACGG+GGG + chr3_2:90217545-90217564 None:intergenic 65.0%
GGCTACATGACCCGCAGACG+GGG + chr3_2:90217546-90217565 None:intergenic 65.0%
CGGCTACATGACCCGCAGAC+GGG + chr3_2:90217547-90217566 None:intergenic 65.0%
CCGGCTACATGACCCGCAGA+CGG + chr3_2:90217548-90217567 None:intergenic 65.0%
CCGTCTGCGGGTCATGTAGC+CGG - chr3_2:90217545-90217564 Msa0436610:intron 65.0%
GCTACATGACCCGCAGACGG+GGG + chr3_2:90217545-90217564 None:intergenic 65.0%
GGCTACATGACCCGCAGACG+GGG + chr3_2:90217546-90217565 None:intergenic 65.0%
CGGCTACATGACCCGCAGAC+GGG + chr3_2:90217547-90217566 None:intergenic 65.0%
CCGGCTACATGACCCGCAGA+CGG + chr3_2:90217548-90217567 None:intergenic 65.0%
CCGTCTGCGGGTCATGTAGC+CGG - chr3_2:90217545-90217564 Msa0436610:intron 65.0%
GAGGGGGTTACCCCCGTCTG+CGG - chr3_2:90217532-90217551 Msa0436610:intron 70.0%
AGGGGGTTACCCCCGTCTGC+GGG - chr3_2:90217533-90217552 Msa0436610:intron 70.0%
GAGGGGGTTACCCCCGTCTG+CGG - chr3_2:90217532-90217551 Msa0436610:intron 70.0%
AGGGGGTTACCCCCGTCTGC+GGG - chr3_2:90217533-90217552 Msa0436610:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 90217176 90218139 90217176 ID=Msa0436610;Name=Msa0436610
chr3_2 mRNA 90217176 90218139 90217176 ID=Msa0436610-mRNA-1;Parent=Msa0436610;Name=Msa0436610-mRNA-1;_AED=0.30;_eAED=0.30;_QI=69|1|1|1|1|1|2|265|173
chr3_2 exon 90217176 90217539 90217176 ID=Msa0436610-mRNA-1:exon:26821;Parent=Msa0436610-mRNA-1
chr3_2 exon 90217648 90218139 90217648 ID=Msa0436610-mRNA-1:exon:26820;Parent=Msa0436610-mRNA-1
chr3_2 five_prime_UTR 90218071 90218139 90218071 ID=Msa0436610-mRNA-1:five_prime_utr;Parent=Msa0436610-mRNA-1
chr3_2 CDS 90217648 90218070 90217648 ID=Msa0436610-mRNA-1:cds;Parent=Msa0436610-mRNA-1
chr3_2 CDS 90217441 90217539 90217441 ID=Msa0436610-mRNA-1:cds;Parent=Msa0436610-mRNA-1
chr3_2 three_prime_UTR 90217176 90217440 90217176 ID=Msa0436610-mRNA-1:three_prime_utr;Parent=Msa0436610-mRNA-1
Gene Sequence

>Msa0436610

ATGTTTTCGTTAAGACTTCCCATGCCACTAGATAAAACTCTAATAACTACTACTACTAACCACGTTCATCGGGGGATCACTCAGATACAAACTCATTCTCGATGTTCTTCAAGGTTTGTTACCAAACGCGTCACTATTGCCGCGGCTTTTCAGGATCAGGTGGATGGGGAAACTTCCGTGGACGAAGATTTTTCAGAAATGGAGCCATTGCCGGAGGAACTGCAAGCGGAGCTGATGCCTAAGCATGTGGCGGTGATTATGGACGGGAATGGGAGGTGGGCAAAGATGAGGGGGTTACCCCCGTCTGCGGGTCATGTAGCCGGTGTAAAGTCGTTGAGAAGGATGGTGAGGTTGTGTTATAGTTGGGGAATAAAGGTTCTAACTGTTTTTGCATTCTCAACCGATAATTGGATTCGACCTAAGGTGGAAGTTGAATTTTTGATGAGCCTCTTTGAAAGAACAATAAATTCTGAAATTGAAGCACTAGAGAGGTGTCAAATTCTAACTGCTTTAACTAATTAA

Protein sequence

>Msa0436610

MFSLRLPMPLDKTLITTTTNHVHRGITQIQTHSRCSSRFVTKRVTIAAAFQDQVDGETSVDEDFSEMEPLPEELQAELMPKHVAVIMDGNGRWAKMRGLPPSAGHVAGVKSLRRMVRLCYSWGIKVLTVFAFSTDNWIRPKVEVEFLMSLFERTINSEIEALERCQILTALTN*