Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060760 | XP_003589617.1 | 99.422 | 173 | 1 | 0 | 1 | 173 | 1 | 173 | 2.46e-123 | 354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060760 | sp|Q9C6Z2|NUD25_ARATH | 77.714 | 175 | 37 | 1 | 1 | 173 | 1 | 175 | 4.98e-100 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060760 | G7I948 | 99.422 | 173 | 1 | 0 | 1 | 173 | 1 | 173 | 1.17e-123 | 354 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011930 | Msa0060760 | 0.850601 | 1.527972e-60 | -8.615850e-47 |
| Msa0016540 | Msa0060760 | 0.823352 | 1.450438e-53 | -8.615850e-47 |
| Msa0030990 | Msa0060760 | 0.813687 | 2.256668e-51 | -8.615850e-47 |
| Msa0035120 | Msa0060760 | 0.806106 | 9.662175e-50 | -8.615850e-47 |
| Msa0039250 | Msa0060760 | 0.812216 | 4.739386e-51 | -8.615850e-47 |
| Msa0052870 | Msa0060760 | 0.803354 | 3.627973e-49 | -8.615850e-47 |
| Msa0060760 | Msa0077340 | 0.802248 | 6.139136e-49 | -8.615850e-47 |
| Msa0060760 | Msa0093850 | 0.847549 | 1.077941e-59 | -8.615850e-47 |
| Msa0060760 | Msa0098470 | 0.816567 | 5.173928e-52 | -8.615850e-47 |
| Msa0060760 | Msa0105120 | 0.977636 | 3.535590e-144 | -8.615850e-47 |
| Msa0060760 | Msa0106620 | 0.801706 | 7.933627e-49 | -8.615850e-47 |
| Msa0060760 | Msa0108390 | 0.819357 | 1.211616e-52 | -8.615850e-47 |
| Msa0060760 | Msa0130110 | 0.825297 | 5.061989e-54 | -8.615850e-47 |
| Msa0060760 | Msa0133720 | 0.822618 | 2.150976e-53 | -8.615850e-47 |
| Msa0060760 | Msa0133820 | 0.810970 | 8.843667e-51 | -8.615850e-47 |
| Msa0060760 | Msa0138360 | 0.852167 | 5.511871e-61 | -8.615850e-47 |
| Msa0060760 | Msa0147980 | 0.836366 | 9.758972e-57 | -8.615850e-47 |
| Msa0060760 | Msa0151840 | 0.800745 | 1.247929e-48 | -8.615850e-47 |
| Msa0060760 | Msa0173890 | 0.812307 | 4.528184e-51 | -8.615850e-47 |
| Msa0060760 | Msa0175930 | 0.811671 | 6.230745e-51 | -8.615850e-47 |
| Msa0060760 | Msa0221000 | 0.815550 | 8.729970e-52 | -8.615850e-47 |
| Msa0060760 | Msa0240900 | 0.812984 | 3.218955e-51 | -8.615850e-47 |
| Msa0060760 | Msa0241830 | 0.827039 | 1.949754e-54 | -8.615850e-47 |
| Msa0060760 | Msa0261170 | 0.810811 | 9.575217e-51 | -8.615850e-47 |
| Msa0060760 | Msa0296250 | 0.810352 | 1.202848e-50 | -8.615850e-47 |
| Msa0060760 | Msa0296790 | 0.800055 | 1.724570e-48 | -8.615850e-47 |
| Msa0060760 | Msa0300320 | 0.808865 | 2.510260e-50 | -8.615850e-47 |
| Msa0060760 | Msa0307270 | 0.814217 | 1.724057e-51 | -8.615850e-47 |
| Msa0060760 | Msa0317970 | 0.813021 | 3.160149e-51 | -8.615850e-47 |
| Msa0060760 | Msa0322900 | 0.824942 | 6.141056e-54 | -8.615850e-47 |
| Msa0060760 | Msa0337700 | 0.801780 | 7.662740e-49 | -8.615850e-47 |
| Msa0060760 | Msa0341690 | 0.842798 | 2.074536e-58 | -8.615850e-47 |
| Msa0060760 | Msa0372810 | 0.802450 | 5.579079e-49 | -8.615850e-47 |
| Msa0060760 | Msa0378720 | 0.800531 | 1.379490e-48 | -8.615850e-47 |
| Msa0060760 | Msa0403660 | 0.805321 | 1.412620e-49 | -8.615850e-47 |
| Msa0060760 | Msa0474730 | 0.800422 | 1.452111e-48 | -8.615850e-47 |
| Msa0060760 | Msa0479200 | 0.820730 | 5.877224e-53 | -8.615850e-47 |
| Msa0060760 | Msa0485240 | 0.800542 | 1.372361e-48 | -8.615850e-47 |
| Msa0060760 | Msa0518030 | 0.836820 | 7.479985e-57 | -8.615850e-47 |
| Msa0060760 | Msa0527190 | 0.844774 | 6.136702e-59 | -8.615850e-47 |
| Msa0060760 | Msa0538910 | 0.805085 | 1.582664e-49 | -8.615850e-47 |
| Msa0060760 | Msa0547990 | 0.815073 | 1.114484e-51 | -8.615850e-47 |
| Msa0060760 | Msa0549360 | 0.803236 | 3.838267e-49 | -8.615850e-47 |
| Msa0060760 | Msa0556010 | 0.800846 | 1.189996e-48 | -8.615850e-47 |
| Msa0060760 | Msa0581690 | 0.803350 | 3.636048e-49 | -8.615850e-47 |
| Msa0060760 | Msa0626270 | 0.811230 | 7.767589e-51 | -8.615850e-47 |
| Msa0060760 | Msa0644030 | 0.810331 | 1.215712e-50 | -8.615850e-47 |
| Msa0060760 | Msa0664600 | 0.800667 | 1.294327e-48 | -8.615850e-47 |
| Msa0060760 | Msa0693330 | 0.816068 | 6.690491e-52 | -8.615850e-47 |
| Msa0060760 | Msa0711430 | 0.806601 | 7.598836e-50 | -8.615850e-47 |
| Msa0060760 | Msa0751260 | 0.803165 | 3.971053e-49 | -8.615850e-47 |
| Msa0060760 | Msa0833530 | 0.813832 | 2.096213e-51 | -8.615850e-47 |
| Msa0060760 | Msa0835970 | 0.803025 | 4.244953e-49 | -8.615850e-47 |
| Msa0060760 | Msa0870520 | 0.811943 | 5.436377e-51 | -8.615850e-47 |
| Msa0060760 | Msa0870540 | 0.805900 | 1.067892e-49 | -8.615850e-47 |
| Msa0060760 | Msa0878510 | 0.824220 | 9.082026e-54 | -8.615850e-47 |
| Msa0060760 | Msa0903710 | 0.804713 | 1.893217e-49 | -8.615850e-47 |
| Msa0060760 | Msa0936380 | 0.815298 | 9.933982e-52 | -8.615850e-47 |
| Msa0060760 | Msa0944200 | 0.808764 | 2.638251e-50 | -8.615850e-47 |
| Msa0060760 | Msa0945490 | 0.810118 | 1.351178e-50 | -8.615850e-47 |
| Msa0060760 | Msa0973140 | 0.805218 | 1.484092e-49 | -8.615850e-47 |
| Msa0060760 | Msa0992030 | 0.811891 | 5.579205e-51 | -8.615850e-47 |
| Msa0060760 | Msa0993760 | 0.817571 | 3.077025e-52 | -8.615850e-47 |
| Msa0060760 | Msa1023500 | 0.803538 | 3.322775e-49 | -8.615850e-47 |
| Msa0060760 | Msa1034500 | 0.822061 | 2.896773e-53 | -8.615850e-47 |
| Msa0060760 | Msa1059960 | 0.810957 | 8.902718e-51 | -8.615850e-47 |
| Msa0060760 | Msa1061980 | 0.809737 | 1.631731e-50 | -8.615850e-47 |
| Msa0060760 | Msa1085330 | 0.835627 | 1.503264e-56 | -8.615850e-47 |
| Msa0060760 | Msa1089450 | 0.822889 | 1.860530e-53 | -8.615850e-47 |
| Msa0060760 | Msa1105160 | 0.809957 | 1.463690e-50 | -8.615850e-47 |
| Msa0060760 | Msa1127590 | 0.800721 | 1.261815e-48 | -8.615850e-47 |
| Msa0060760 | Msa1160920 | 0.809552 | 1.788613e-50 | -8.615850e-47 |
| Msa0060760 | Msa1276660 | 0.805172 | 1.517568e-49 | -8.615850e-47 |
| Msa0060760 | Msa1348090 | 0.845458 | 4.009958e-59 | -8.615850e-47 |
| Msa0060760 | Msa1371520 | 0.850059 | 2.168566e-60 | -8.615850e-47 |
| Msa0060760 | Msa1383530 | 0.803491 | 3.398136e-49 | -8.615850e-47 |
| Msa0060760 | Msa1385890 | 0.804309 | 2.298336e-49 | -8.615850e-47 |
| Msa0060760 | Msa1393820 | 0.802231 | 6.187926e-49 | -8.615850e-47 |
| Msa0060760 | Msa1418240 | 0.809037 | 2.305922e-50 | -8.615850e-47 |
| Msa0060760 | Msa1425880 | 0.802071 | 6.674968e-49 | -8.615850e-47 |
| Msa0060760 | Msa1459460 | 0.804416 | 2.182659e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060760 | MtrunA17_Chr1g0160501 | 99.422 | 173 | 1 | 0 | 1 | 173 | 1 | 173 | 2.26e-127 | 354 |
| Msa0060760 | MtrunA17_Chr1g0197081 | 59.627 | 161 | 64 | 1 | 1 | 160 | 42 | 202 | 7.16e-71 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060760 | AT1G30110.2 | 77.714 | 175 | 37 | 1 | 1 | 173 | 1 | 175 | 5.06e-101 | 288 |
| Msa0060760 | AT1G30110.1 | 77.714 | 175 | 37 | 1 | 1 | 173 | 1 | 175 | 5.06e-101 | 288 |
| Msa0060760 | AT3G10620.1 | 57.764 | 161 | 67 | 1 | 1 | 160 | 56 | 216 | 2.00e-68 | 207 |
| Msa0060760 | AT5G06340.1 | 56.250 | 160 | 69 | 1 | 1 | 159 | 55 | 214 | 1.57e-62 | 192 |
Find 78 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTCCACTCTGCAAATTC+TGG | 0.093641 | 1_2:+18613388 | None:intergenic |
| CCCGGTTTAGAAAATAAATT+TGG | 0.192294 | 1_2:+18612780 | None:intergenic |
| TTCTCTAATAGCAGCAGATT+TGG | 0.244965 | 1_2:+18614184 | None:intergenic |
| CTCAGTAAGTGAAATGGATT+TGG | 0.268607 | 1_2:+18612896 | None:intergenic |
| AACACTCAACTATTTGTAAA+TGG | 0.270794 | 1_2:-18612864 | Msa0060760:three_prime_UTR |
| CAGAATTTGCAGAGTGGAAA+TGG | 0.298244 | 1_2:-18613387 | Msa0060760:CDS |
| GGCTAAAGTCAATCGTCTTT+GGG | 0.307296 | 1_2:-18613812 | Msa0060760:CDS |
| TTCGCGTACATCTGTGCCTT+TGG | 0.307652 | 1_2:-18613061 | Msa0060760:three_prime_UTR |
| TGTTACTTGTTTGTTATTGT+TGG | 0.316374 | 1_2:+18615344 | None:intergenic |
| CAAAATTGTTCCTTGTACTT+AGG | 0.322157 | 1_2:+18612689 | None:intergenic |
| ACCTGCTCAATAACTTCTTC+AGG | 0.335949 | 1_2:+18613358 | None:intergenic |
| AGGCTAAAGTCAATCGTCTT+TGG | 0.336576 | 1_2:-18613813 | Msa0060760:CDS |
| AGTGAAATTAGATAAGAAAA+TGG | 0.345012 | 1_2:+18613120 | None:intergenic |
| GTTGCATTTCCTTGAAAGTA+AGG | 0.354258 | 1_2:+18613202 | None:intergenic |
| ACCTTCAAGCCTTACTTTCA+AGG | 0.360232 | 1_2:-18613211 | Msa0060760:CDS |
| GTGCATTACAGGTTGATAAA+TGG | 0.375642 | 1_2:-18613864 | Msa0060760:intron |
| TCTCTAATAGCAGCAGATTT+GGG | 0.380677 | 1_2:+18614185 | None:intergenic |
| TCGCGTACATCTGTGCCTTT+GGG | 0.385910 | 1_2:-18613060 | Msa0060760:three_prime_UTR |
| GCTTCCAGATTGAATGTTCC+AGG | 0.385919 | 1_2:-18614372 | Msa0060760:CDS |
| ATTTCCACTCTGCAAATTCT+GGG | 0.388442 | 1_2:+18613389 | None:intergenic |
| GGTTGTTACAACTTCTTCAT+AGG | 0.389048 | 1_2:+18613231 | None:intergenic |
| CTGAAATGACATCATGTTTG+AGG | 0.390357 | 1_2:-18612596 | Msa0060760:three_prime_UTR |
| GGTAGTTAGAACTTTCCATT+AGG | 0.400278 | 1_2:-18612839 | Msa0060760:three_prime_UTR |
| TCCATTTCACTTACTGAGGT+TGG | 0.401653 | 1_2:-18612891 | Msa0060760:three_prime_UTR |
| AGAGAACTTCGAGAAGAAAC+TGG | 0.413791 | 1_2:-18614167 | Msa0060760:CDS |
| TACAAGAAGCAAGTACCTAA+TGG | 0.421481 | 1_2:+18612824 | None:intergenic |
| TCTCATCAATTCAGATGATC+AGG | 0.421614 | 1_2:-18615269 | Msa0060760:intron |
| TCCTTGAAAGTAAGGCTTGA+AGG | 0.425267 | 1_2:+18613210 | None:intergenic |
| TCCAACCTCAGTAAGTGAAA+TGG | 0.425402 | 1_2:+18612890 | None:intergenic |
| TGAGGCATTTGCCATGCTCC+TGG | 0.426678 | 1_2:+18614354 | None:intergenic |
| AAATTCTGGGTCTGCTTCAC+CGG | 0.426680 | 1_2:+18613402 | None:intergenic |
| TTTCAGAGAACATGTTAGAA+TGG | 0.445184 | 1_2:+18612613 | None:intergenic |
| TGCTCCTGGAACATTCAATC+TGG | 0.446702 | 1_2:+18614368 | None:intergenic |
| AGGAGCATGGCAAATGCCTC+AGG | 0.465802 | 1_2:-18614352 | Msa0060760:intron |
| GAAACAAAGATAAAGAGTGT+TGG | 0.480520 | 1_2:+18615401 | None:intergenic |
| GAACATGTTAGAATGGTTGA+TGG | 0.481954 | 1_2:+18612620 | None:intergenic |
| AAAATATCGAGCTTGAAATC+CGG | 0.488170 | 1_2:+18613022 | None:intergenic |
| CCTGCTCAATAACTTCTTCA+GGG | 0.490006 | 1_2:+18613359 | None:intergenic |
| CCCTGAAGAAGTTATTGAGC+AGG | 0.490394 | 1_2:-18613359 | Msa0060760:intron |
| GTGTTGACAGTGCGAACGTA+TGG | 0.490885 | 1_2:-18612938 | Msa0060760:three_prime_UTR |
| ACGCGAATGCTTGAAATTTG+TGG | 0.493230 | 1_2:+18613077 | None:intergenic |
| GGCATGGACAGGCACAGAAA+TGG | 0.494440 | 1_2:-18613780 | Msa0060760:intron |
| AGAATTTGCAGAGTGGAAAT+GGG | 0.503598 | 1_2:-18613386 | Msa0060760:CDS |
| TGGGTCAAAATCAGACAATC+CGG | 0.506184 | 1_2:-18613041 | Msa0060760:three_prime_UTR |
| GTTACAACTTCTTCATAGGT+AGG | 0.511880 | 1_2:+18613235 | None:intergenic |
| GGGAGGAGAATGGCATGGAC+AGG | 0.513397 | 1_2:-18613791 | Msa0060760:CDS |
| ATGAGACAGACACCAACGTT+AGG | 0.524807 | 1_2:+18615286 | None:intergenic |
| ATCGTCTTTGGGGAGGAGAA+TGG | 0.528661 | 1_2:-18613801 | Msa0060760:CDS |
| TTGACTTTAGCCTTCACAGC+AGG | 0.532701 | 1_2:+18613823 | None:intergenic |
| TTGTTTATAACTTAAGTACA+AGG | 0.537609 | 1_2:-18612669 | Msa0060760:three_prime_UTR |
| TGACTTCCCTCCTGCTGTGA+AGG | 0.542301 | 1_2:-18613833 | Msa0060760:CDS |
| CTCAACTATTTGTAAATGGA+TGG | 0.543339 | 1_2:-18612860 | Msa0060760:three_prime_UTR |
| CAAATCCATTTCACTTACTG+AGG | 0.549203 | 1_2:-18612895 | Msa0060760:three_prime_UTR |
| TCACAATCATCCTCGCAGCC+CGG | 0.551358 | 1_2:+18612762 | None:intergenic |
| ACTTTAGCCTTCACAGCAGG+AGG | 0.558265 | 1_2:+18613826 | None:intergenic |
| ATGCTTGAAATTTGTGGCTG+CGG | 0.559269 | 1_2:+18613083 | None:intergenic |
| CAACACAAACACAACACAAG+TGG | 0.567169 | 1_2:+18615457 | None:intergenic |
| GATTGAATGTTCCAGGAGCA+TGG | 0.573208 | 1_2:-18614365 | Msa0060760:CDS |
| TTCTGGGTCTGCTTCACCGG+TGG | 0.576581 | 1_2:+18613405 | None:intergenic |
| GAGGTGTGAATGATGAGTAC+TGG | 0.579208 | 1_2:+18615431 | None:intergenic |
| TTCGCACTGTCAACACGTGT+TGG | 0.590594 | 1_2:+18612945 | None:intergenic |
| AAAGAGTGTTGGAGATGATG+AGG | 0.592928 | 1_2:+18615412 | None:intergenic |
| ATAGTATTGTATTGTGAATG+TGG | 0.598793 | 1_2:+18615495 | None:intergenic |
| TGACTTGATACCTAAGTACA+AGG | 0.602640 | 1_2:-18612699 | Msa0060760:three_prime_UTR |
| GCTAAAGTCAATCGTCTTTG+GGG | 0.604526 | 1_2:-18613811 | Msa0060760:CDS |
| AACAAGTAACAGCTAAGACA+TGG | 0.618371 | 1_2:-18615332 | Msa0060760:exon |
| CGAAATGTAAATCGACAAAG+TGG | 0.620980 | 1_2:-18613174 | Msa0060760:CDS |
| CTTTGGGGAGGAGAATGGCA+TGG | 0.624852 | 1_2:-18613796 | Msa0060760:CDS |
| GACAGACACCAACGTTAGGA+CGG | 0.631134 | 1_2:+18615290 | None:intergenic |
| GGTGAAATCAACTTAGCCAC+CGG | 0.634355 | 1_2:-18613421 | Msa0060760:CDS |
| CTTTAGCCTTCACAGCAGGA+GGG | 0.649727 | 1_2:+18613827 | None:intergenic |
| AAAGTCAATCGTCTTTGGGG+AGG | 0.655166 | 1_2:-18613808 | Msa0060760:CDS |
| ACGTTAGGACGGTAACCTTG+TGG | 0.657862 | 1_2:+18615301 | None:intergenic |
| GTCTGCTGAGATAATCGCTG+AGG | 0.670608 | 1_2:-18614138 | Msa0060760:intron |
| GTATAGATCTGTTGATGTCG+CGG | 0.674346 | 1_2:-18612733 | Msa0060760:three_prime_UTR |
| CAGACCCAGAATTTGCAGAG+TGG | 0.693037 | 1_2:-18613393 | Msa0060760:CDS |
| CAAGGTTACCGTCCTAACGT+TGG | 0.707808 | 1_2:-18615298 | Msa0060760:CDS |
| GACATGGAGAATCTTCCACA+AGG | 0.720171 | 1_2:-18615316 | Msa0060760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTAAGTTATTTGAAT+TGG | + | chr1_2:18613797-18613816 | None:intergenic | 10.0% |
| !! | ATAGAAAGAAAAAAAAAAGA+TGG | + | chr1_2:18612855-18612874 | None:intergenic | 15.0% |
| !!! | ATTAATTGTTTGTAGATTTT+AGG | - | chr1_2:18613047-18613066 | Msa0060760:three_prime_UTR | 15.0% |
| !!! | ATTTTTCCATAATTCATTTT+TGG | - | chr1_2:18613107-18613126 | Msa0060760:three_prime_UTR | 15.0% |
| !!! | ATGTTGTAAATTTAACTTAA+AGG | - | chr1_2:18613539-18613558 | Msa0060760:intron | 15.0% |
| !!! | ATATTTTTTCGAGTAAAATT+TGG | - | chr1_2:18614503-18614522 | Msa0060760:intron | 15.0% |
| !! | ATGAAATTAAAAAAAGATGA+CGG | - | chr1_2:18614643-18614662 | Msa0060760:intron | 15.0% |
| !! | TGAAAATTTAGGTAAGAATA+TGG | - | chr1_2:18612894-18612913 | Msa0060760:three_prime_UTR | 20.0% |
| !!! | TGTTGTTTGTAGATATTTTT+TGG | - | chr1_2:18613022-18613041 | Msa0060760:three_prime_UTR | 20.0% |
| !!! | TGAAGTTGATTTATACTTTA+AGG | + | chr1_2:18613233-18613252 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTTCAGATATTTG+TGG | - | chr1_2:18613691-18613710 | Msa0060760:intron | 20.0% |
| !!! | AATTTTTTGACTGTTCTTTT+GGG | - | chr1_2:18613845-18613864 | Msa0060760:CDS | 20.0% |
| !!! | ACAAAAGCATATATTAACAA+TGG | - | chr1_2:18614387-18614406 | Msa0060760:intron | 20.0% |
| !!! | TCTTTTGTTATTAATAAGCA+TGG | - | chr1_2:18614542-18614561 | Msa0060760:intron | 20.0% |
| !! | ATCAATTACGAACATTTAAT+AGG | - | chr1_2:18614614-18614633 | Msa0060760:intron | 20.0% |
| !! | GAAAAATACATAATTGTTAC+AGG | + | chr1_2:18614770-18614789 | None:intergenic | 20.0% |
| !! | AGTGAAATTAGATAAGAAAA+TGG | + | chr1_2:18614968-18614987 | None:intergenic | 20.0% |
| !!! | TTTTCTTATCTAATTTCACT+TGG | - | chr1_2:18614968-18614987 | Msa0060760:intron | 20.0% |
| !! | TTGTTTATAACTTAAGTACA+AGG | - | chr1_2:18615416-18615435 | Msa0060760:five_prime_UTR | 20.0% |
| ! | ATAGTATTGTATTGTGAATG+TGG | + | chr1_2:18612593-18612612 | None:intergenic | 25.0% |
| !!! | TAAACTTTTTCTTCTCTCTA+AGG | - | chr1_2:18612712-18612731 | Msa0060760:three_prime_UTR | 25.0% |
| !!! | TGTTACTTGTTTGTTATTGT+TGG | + | chr1_2:18612744-18612763 | None:intergenic | 25.0% |
| !! | AACCTTTTCTGAATCTATTT+TGG | - | chr1_2:18612938-18612957 | Msa0060760:three_prime_UTR | 25.0% |
| ! | AACCAAAATAGATTCAGAAA+AGG | + | chr1_2:18612943-18612962 | None:intergenic | 25.0% |
| !!! | TTCTGAATCTATTTTGGTTT+TGG | - | chr1_2:18612944-18612963 | Msa0060760:three_prime_UTR | 25.0% |
| !!! | TTCCATAATTCATTTTTGGT+TGG | - | chr1_2:18613111-18613130 | Msa0060760:three_prime_UTR | 25.0% |
| ! | AACCAACCAAAAATGAATTA+TGG | + | chr1_2:18613116-18613135 | None:intergenic | 25.0% |
| !!! | TTTGGTTGGTTTTCTATTTT+TGG | - | chr1_2:18613125-18613144 | Msa0060760:three_prime_UTR | 25.0% |
| !!! | TTATATTTTTGTTAACCCTC+TGG | - | chr1_2:18613301-18613320 | Msa0060760:intron | 25.0% |
| !!! | TTAAAGCAAAGTGTTTTTCT+TGG | - | chr1_2:18613482-18613501 | Msa0060760:intron | 25.0% |
| ! | TACACTGTTATAGCATATAT+AGG | + | chr1_2:18613588-18613607 | None:intergenic | 25.0% |
| !!! | CAATTTTTTGACTGTTCTTT+TGG | - | chr1_2:18613844-18613863 | Msa0060760:CDS | 25.0% |
| !!! | ATTTTTTGACTGTTCTTTTG+GGG | - | chr1_2:18613846-18613865 | Msa0060760:CDS | 25.0% |
| ! | AACTAAATGCAGAAAAGAAA+AGG | + | chr1_2:18613984-18614003 | None:intergenic | 25.0% |
| ! | AAGAGAAACATTTAAGAATG+TGG | + | chr1_2:18614365-18614384 | None:intergenic | 25.0% |
| !!! | TTTGTTATTAATAAGCATGG+TGG | - | chr1_2:18614545-18614564 | Msa0060760:intron | 25.0% |
| ! | ACAAAGTCAGTATTTCTTAT+TGG | - | chr1_2:18614579-18614598 | Msa0060760:intron | 25.0% |
| ! | TGTTTGAAAAACTAATCACT+GGG | - | chr1_2:18614792-18614811 | Msa0060760:intron | 25.0% |
| ! | AACACTCAACTATTTGTAAA+TGG | - | chr1_2:18615221-18615240 | Msa0060760:intron | 25.0% |
| !!! | GCCAAATTTATTTTCTAAAC+CGG | - | chr1_2:18615304-18615323 | Msa0060760:CDS | 25.0% |
| !!! | CCAAATTTATTTTCTAAACC+GGG | - | chr1_2:18615305-18615324 | Msa0060760:CDS | 25.0% |
| ! | GAAACAAAGATAAAGAGTGT+TGG | + | chr1_2:18612687-18612706 | None:intergenic | 30.0% |
| GAATATGGTGTCTTAATCTA+AGG | - | chr1_2:18612909-18612928 | Msa0060760:three_prime_UTR | 30.0% | |
| ! | ATTTTAGGCTCTACTAAAGA+TGG | - | chr1_2:18613062-18613081 | Msa0060760:three_prime_UTR | 30.0% |
| !! | GTTGATTTATACTTTAAGGC+TGG | + | chr1_2:18613229-18613248 | None:intergenic | 30.0% |
| AATTTCTGTGGAACAATTCT+TGG | + | chr1_2:18613378-18613397 | None:intergenic | 30.0% | |
| CAATCTAGATTCAATTTCTG+TGG | + | chr1_2:18613390-18613409 | None:intergenic | 30.0% | |
| ! | TGATTAATGTTTTCCATCGA+AGG | + | chr1_2:18613427-18613446 | None:intergenic | 30.0% |
| TGGCTAGATTTGGAAAATTT+AGG | - | chr1_2:18613502-18613521 | Msa0060760:intron | 30.0% | |
| ATATGCTATAACAGTGTACT+AGG | - | chr1_2:18613590-18613609 | Msa0060760:intron | 30.0% | |
| GTATACTAGTACATAATGTG+AGG | + | chr1_2:18613762-18613781 | None:intergenic | 30.0% | |
| AGAACAGTCAAAAAATTGCT+CGG | + | chr1_2:18613842-18613861 | None:intergenic | 30.0% | |
| !! | AGAAATACTGACTTTGTTAG+CGG | + | chr1_2:18614576-18614595 | None:intergenic | 30.0% |
| CTGTTTGAAAAACTAATCAC+TGG | - | chr1_2:18614791-18614810 | Msa0060760:intron | 30.0% | |
| AAAATATCGAGCTTGAAATC+CGG | + | chr1_2:18615066-18615085 | None:intergenic | 30.0% | |
| CTCAACTATTTGTAAATGGA+TGG | - | chr1_2:18615225-18615244 | Msa0060760:intron | 30.0% | |
| CCCGGTTTAGAAAATAAATT+TGG | + | chr1_2:18615308-18615327 | None:intergenic | 30.0% | |
| CAAAATTGTTCCTTGTACTT+AGG | + | chr1_2:18615399-18615418 | None:intergenic | 30.0% | |
| TTTCAGAGAACATGTTAGAA+TGG | + | chr1_2:18615475-18615494 | None:intergenic | 30.0% | |
| AACAAGTAACAGCTAAGACA+TGG | - | chr1_2:18612753-18612772 | Msa0060760:three_prime_UTR | 35.0% | |
| TCTCATCAATTCAGATGATC+AGG | - | chr1_2:18612816-18612835 | Msa0060760:three_prime_UTR | 35.0% | |
| ! | GTGTTTTTCTTGGCTAGATT+TGG | - | chr1_2:18613492-18613511 | Msa0060760:intron | 35.0% |
| ! | TAATTTGTATGACTACGACG+AGG | - | chr1_2:18613647-18613666 | Msa0060760:intron | 35.0% |
| !!! | ACTGTTCTTTTGGGGTTTTT+AGG | - | chr1_2:18613854-18613873 | Msa0060760:CDS | 35.0% |
| !!! | CTGTTCTTTTGGGGTTTTTA+GGG | - | chr1_2:18613855-18613874 | Msa0060760:CDS | 35.0% |
| !!! | TTTTAGGGAGGTATTGAAGA+TGG | - | chr1_2:18613870-18613889 | Msa0060760:intron | 35.0% |
| TCTCTAATAGCAGCAGATTT+GGG | + | chr1_2:18613903-18613922 | None:intergenic | 35.0% | |
| TTCTCTAATAGCAGCAGATT+TGG | + | chr1_2:18613904-18613923 | None:intergenic | 35.0% | |
| ATCAATACTCCATAGAGCAT+CGG | + | chr1_2:18614045-18614064 | None:intergenic | 35.0% | |
| !! | GTGCATTACAGGTTGATAAA+TGG | - | chr1_2:18614221-18614240 | Msa0060760:intron | 35.0% |
| TGCATCAATGAAAGCGATAT+AGG | - | chr1_2:18614435-18614454 | Msa0060760:intron | 35.0% | |
| CGAAAAAATATCACGAGACA+AGG | + | chr1_2:18614494-18614513 | None:intergenic | 35.0% | |
| ATTTCCACTCTGCAAATTCT+GGG | + | chr1_2:18614699-18614718 | None:intergenic | 35.0% | |
| AGAATTTGCAGAGTGGAAAT+GGG | - | chr1_2:18614699-18614718 | Msa0060760:intron | 35.0% | |
| GTTACAACTTCTTCATAGGT+AGG | + | chr1_2:18614853-18614872 | None:intergenic | 35.0% | |
| GGTTGTTACAACTTCTTCAT+AGG | + | chr1_2:18614857-18614876 | None:intergenic | 35.0% | |
| GTTGCATTTCCTTGAAAGTA+AGG | + | chr1_2:18614886-18614905 | None:intergenic | 35.0% | |
| CGAAATGTAAATCGACAAAG+TGG | - | chr1_2:18614911-18614930 | Msa0060760:intron | 35.0% | |
| !! | ATTGTCTGATTTTGACCCAA+AGG | + | chr1_2:18615043-18615062 | None:intergenic | 35.0% |
| ! | CTCAGTAAGTGAAATGGATT+TGG | + | chr1_2:18615192-18615211 | None:intergenic | 35.0% |
| CAAATCCATTTCACTTACTG+AGG | - | chr1_2:18615190-18615209 | Msa0060760:intron | 35.0% | |
| GGTAGTTAGAACTTTCCATT+AGG | - | chr1_2:18615246-18615265 | Msa0060760:intron | 35.0% | |
| TACAAGAAGCAAGTACCTAA+TGG | + | chr1_2:18615264-18615283 | None:intergenic | 35.0% | |
| TGACTTGATACCTAAGTACA+AGG | - | chr1_2:18615386-18615405 | Msa0060760:five_prime_UTR | 35.0% | |
| GAACATGTTAGAATGGTTGA+TGG | + | chr1_2:18615468-18615487 | None:intergenic | 35.0% | |
| CTGAAATGACATCATGTTTG+AGG | - | chr1_2:18615489-18615508 | Msa0060760:five_prime_UTR | 35.0% | |
| CAACACAAACACAACACAAG+TGG | + | chr1_2:18612631-18612650 | None:intergenic | 40.0% | |
| !! | AAAGAGTGTTGGAGATGATG+AGG | + | chr1_2:18612676-18612695 | None:intergenic | 40.0% |
| ATCATTTGAGCCCAATCACT+TGG | - | chr1_2:18613443-18613462 | Msa0060760:CDS | 40.0% | |
| TAACCGCAAACCAAGTGATT+GGG | + | chr1_2:18613456-18613475 | None:intergenic | 40.0% | |
| ATAACCGCAAACCAAGTGAT+TGG | + | chr1_2:18613457-18613476 | None:intergenic | 40.0% | |
| CAGTGTACTAGGAATTAGAG+AGG | - | chr1_2:18613601-18613620 | Msa0060760:intron | 40.0% | |
| !!! | TTCTTTTGGGGTTTTTAGGG+AGG | - | chr1_2:18613858-18613877 | Msa0060760:intron | 40.0% |
| AGAGAACTTCGAGAAGAAAC+TGG | - | chr1_2:18613918-18613937 | Msa0060760:intron | 40.0% | |
| ATTTCTCTGCGATAACTCTG+TGG | - | chr1_2:18614166-18614185 | Msa0060760:CDS | 40.0% | |
| TGACAGTGTTTGTGCATTAC+AGG | - | chr1_2:18614210-18614229 | Msa0060760:CDS | 40.0% | |
| AGGCTAAAGTCAATCGTCTT+TGG | - | chr1_2:18614272-18614291 | Msa0060760:intron | 40.0% | |
| GGCTAAAGTCAATCGTCTTT+GGG | - | chr1_2:18614273-18614292 | Msa0060760:intron | 40.0% | |
| GCTAAAGTCAATCGTCTTTG+GGG | - | chr1_2:18614274-18614293 | Msa0060760:intron | 40.0% | |
| CATTTCCACTCTGCAAATTC+TGG | + | chr1_2:18614700-18614719 | None:intergenic | 40.0% | |
| CAGAATTTGCAGAGTGGAAA+TGG | - | chr1_2:18614698-18614717 | Msa0060760:intron | 40.0% | |
| CCTGCTCAATAACTTCTTCA+GGG | + | chr1_2:18614729-18614748 | None:intergenic | 40.0% | |
| ACCTGCTCAATAACTTCTTC+AGG | + | chr1_2:18614730-18614749 | None:intergenic | 40.0% | |
| CTGGGCTAATAATCGATTAC+AGG | - | chr1_2:18614810-18614829 | Msa0060760:intron | 40.0% | |
| GGCTAATAATCGATTACAGG+CGG | - | chr1_2:18614813-18614832 | Msa0060760:intron | 40.0% | |
| TAATAATCGATTACAGGCGG+TGG | - | chr1_2:18614816-18614835 | Msa0060760:intron | 40.0% | |
| ACCTTCAAGCCTTACTTTCA+AGG | - | chr1_2:18614874-18614893 | Msa0060760:intron | 40.0% | |
| TCCTTGAAAGTAAGGCTTGA+AGG | + | chr1_2:18614878-18614897 | None:intergenic | 40.0% | |
| ATGCTTGAAATTTGTGGCTG+CGG | + | chr1_2:18615005-18615024 | None:intergenic | 40.0% | |
| ACGCGAATGCTTGAAATTTG+TGG | + | chr1_2:18615011-18615030 | None:intergenic | 40.0% | |
| TGGGTCAAAATCAGACAATC+CGG | - | chr1_2:18615044-18615063 | Msa0060760:intron | 40.0% | |
| TCCATTTCACTTACTGAGGT+TGG | - | chr1_2:18615194-18615213 | Msa0060760:intron | 40.0% | |
| TCCAACCTCAGTAAGTGAAA+TGG | + | chr1_2:18615198-18615217 | None:intergenic | 40.0% | |
| GTATAGATCTGTTGATGTCG+CGG | - | chr1_2:18615352-18615371 | Msa0060760:five_prime_UTR | 40.0% | |
| GAGGTGTGAATGATGAGTAC+TGG | + | chr1_2:18612657-18612676 | None:intergenic | 45.0% | |
| GACATGGAGAATCTTCCACA+AGG | - | chr1_2:18612769-18612788 | Msa0060760:three_prime_UTR | 45.0% | |
| ATGAGACAGACACCAACGTT+AGG | + | chr1_2:18612802-18612821 | None:intergenic | 45.0% | |
| ! | TTGTTAACCCTCTGGTTCAG+TGG | - | chr1_2:18613309-18613328 | Msa0060760:intron | 45.0% |
| GGAAGGACCTGATAATTCGT+CGG | - | chr1_2:18613330-18613349 | Msa0060760:intron | 45.0% | |
| TTCACGACCGACGAATTATC+AGG | + | chr1_2:18613340-18613359 | None:intergenic | 45.0% | |
| TCCATCGAAGGACAATCGTT+CGG | + | chr1_2:18613415-18613434 | None:intergenic | 45.0% | |
| TTGTATGACTACGACGAGGA+AGG | - | chr1_2:18613651-18613670 | Msa0060760:intron | 45.0% | |
| TGTATGACTACGACGAGGAA+GGG | - | chr1_2:18613652-18613671 | Msa0060760:intron | 45.0% | |
| GCTTCCAGATTGAATGTTCC+AGG | - | chr1_2:18613713-18613732 | Msa0060760:intron | 45.0% | |
| TGCTCCTGGAACATTCAATC+TGG | + | chr1_2:18613720-18613739 | None:intergenic | 45.0% | |
| GATTGAATGTTCCAGGAGCA+TGG | - | chr1_2:18613720-18613739 | Msa0060760:intron | 45.0% | |
| ACATAATGTGAGGTCACCTG+AGG | + | chr1_2:18613752-18613771 | None:intergenic | 45.0% | |
| ! | TTGACTTTAGCCTTCACAGC+AGG | + | chr1_2:18614265-18614284 | None:intergenic | 45.0% |
| ! | AAAGTCAATCGTCTTTGGGG+AGG | - | chr1_2:18614277-18614296 | Msa0060760:intron | 45.0% |
| CATTTACTCCATGCACACTC+AGG | + | chr1_2:18614464-18614483 | None:intergenic | 45.0% | |
| CTGAGTGTGCATGGAGTAAA+TGG | - | chr1_2:18614462-18614481 | Msa0060760:intron | 45.0% | |
| GGTGAAATCAACTTAGCCAC+CGG | - | chr1_2:18614664-18614683 | Msa0060760:intron | 45.0% | |
| AAATTCTGGGTCTGCTTCAC+CGG | + | chr1_2:18614686-18614705 | None:intergenic | 45.0% | |
| CCCTGAAGAAGTTATTGAGC+AGG | - | chr1_2:18614726-18614745 | Msa0060760:intron | 45.0% | |
| !!! | TTTTTTATTAATGAAAATTT+AGG | - | chr1_2:18612883-18612902 | Msa0060760:three_prime_UTR | 5.0% |
| ACGTTAGGACGGTAACCTTG+TGG | + | chr1_2:18612787-18612806 | None:intergenic | 50.0% | |
| CAAGGTTACCGTCCTAACGT+TGG | - | chr1_2:18612787-18612806 | Msa0060760:three_prime_UTR | 50.0% | |
| GACAGACACCAACGTTAGGA+CGG | + | chr1_2:18612798-18612817 | None:intergenic | 50.0% | |
| ! | TAACCCTCTGGTTCAGTGGA+AGG | - | chr1_2:18613313-18613332 | Msa0060760:intron | 50.0% |
| ! | GAGCCCAATCACTTGGTTTG+CGG | - | chr1_2:18613450-18613469 | Msa0060760:CDS | 50.0% |
| ACGACGAGGAAGGGAAATCA+TGG | - | chr1_2:18613661-18613680 | Msa0060760:intron | 50.0% | |
| GTCTGCTGAGATAATCGCTG+AGG | - | chr1_2:18613947-18613966 | Msa0060760:intron | 50.0% | |
| TACGTCTAGCCGATGCTCTA+TGG | - | chr1_2:18614033-18614052 | Msa0060760:intron | 50.0% | |
| ! | CTTTAGCCTTCACAGCAGGA+GGG | + | chr1_2:18614261-18614280 | None:intergenic | 50.0% |
| ! | ACTTTAGCCTTCACAGCAGG+AGG | + | chr1_2:18614262-18614281 | None:intergenic | 50.0% |
| ! | ATCGTCTTTGGGGAGGAGAA+TGG | - | chr1_2:18614284-18614303 | Msa0060760:intron | 50.0% |
| ATAGGAAGCCTGAGTGTGCA+TGG | - | chr1_2:18614453-18614472 | Msa0060760:intron | 50.0% | |
| CAGACCCAGAATTTGCAGAG+TGG | - | chr1_2:18614692-18614711 | Msa0060760:intron | 50.0% | |
| TTCGCGTACATCTGTGCCTT+TGG | - | chr1_2:18615024-18615043 | Msa0060760:intron | 50.0% | |
| TCGCGTACATCTGTGCCTTT+GGG | - | chr1_2:18615025-18615044 | Msa0060760:intron | 50.0% | |
| TTCGCACTGTCAACACGTGT+TGG | + | chr1_2:18615143-18615162 | None:intergenic | 50.0% | |
| ! | GTGTTGACAGTGCGAACGTA+TGG | - | chr1_2:18615147-18615166 | Msa0060760:intron | 50.0% |
| ! | ATTTTCTAAACCGGGCTGCG+AGG | - | chr1_2:18615313-18615332 | Msa0060760:CDS | 50.0% |
| GGTCCTTCCACTGAACCAGA+GGG | + | chr1_2:18613319-18613338 | None:intergenic | 55.0% | |
| AGGTCCTTCCACTGAACCAG+AGG | + | chr1_2:18613320-18613339 | None:intergenic | 55.0% | |
| GCCGAACGATTGTCCTTCGA+TGG | - | chr1_2:18613411-18613430 | Msa0060760:CDS | 55.0% | |
| ! | TGAGGCATTTGCCATGCTCC+TGG | + | chr1_2:18613734-18613753 | None:intergenic | 55.0% |
| ! | AGGAGCATGGCAAATGCCTC+AGG | - | chr1_2:18613733-18613752 | Msa0060760:intron | 55.0% |
| TGACTTCCCTCCTGCTGTGA+AGG | - | chr1_2:18614252-18614271 | Msa0060760:intron | 55.0% | |
| ! | CTTTGGGGAGGAGAATGGCA+TGG | - | chr1_2:18614289-18614308 | Msa0060760:intron | 55.0% |
| GGCATGGACAGGCACAGAAA+TGG | - | chr1_2:18614305-18614324 | Msa0060760:intron | 55.0% | |
| TCACAATCATCCTCGCAGCC+CGG | + | chr1_2:18615326-18615345 | None:intergenic | 55.0% | |
| GGGAGGAGAATGGCATGGAC+AGG | - | chr1_2:18614294-18614313 | Msa0060760:intron | 60.0% | |
| TTCTGGGTCTGCTTCACCGG+TGG | + | chr1_2:18614683-18614702 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 18612589 | 18615518 | 18612589 | ID=Msa0060760;Name=Msa0060760 |
| chr1_2 | mRNA | 18612589 | 18615518 | 18612589 | ID=Msa0060760-mRNA-1;Parent=Msa0060760;Name=Msa0060760-mRNA-1;_AED=0.14;_eAED=0.14;_QI=183|1|1|1|1|1|6|582|173 |
| chr1_2 | exon | 18612589 | 18613275 | 18612589 | ID=Msa0060760-mRNA-1:exon:7231;Parent=Msa0060760-mRNA-1 |
| chr1_2 | exon | 18613360 | 18613471 | 18613360 | ID=Msa0060760-mRNA-1:exon:7230;Parent=Msa0060760-mRNA-1 |
| chr1_2 | exon | 18613781 | 18613875 | 18613781 | ID=Msa0060760-mRNA-1:exon:7229;Parent=Msa0060760-mRNA-1 |
| chr1_2 | exon | 18614139 | 18614231 | 18614139 | ID=Msa0060760-mRNA-1:exon:7228;Parent=Msa0060760-mRNA-1 |
| chr1_2 | exon | 18614353 | 18614403 | 18614353 | ID=Msa0060760-mRNA-1:exon:7227;Parent=Msa0060760-mRNA-1 |
| chr1_2 | exon | 18615270 | 18615518 | 18615270 | ID=Msa0060760-mRNA-1:exon:7226;Parent=Msa0060760-mRNA-1 |
| chr1_2 | five_prime_UTR | 18615336 | 18615518 | 18615336 | ID=Msa0060760-mRNA-1:five_prime_utr;Parent=Msa0060760-mRNA-1 |
| chr1_2 | CDS | 18615270 | 18615335 | 18615270 | ID=Msa0060760-mRNA-1:cds;Parent=Msa0060760-mRNA-1 |
| chr1_2 | CDS | 18614353 | 18614403 | 18614353 | ID=Msa0060760-mRNA-1:cds;Parent=Msa0060760-mRNA-1 |
| chr1_2 | CDS | 18614139 | 18614231 | 18614139 | ID=Msa0060760-mRNA-1:cds;Parent=Msa0060760-mRNA-1 |
| chr1_2 | CDS | 18613781 | 18613875 | 18613781 | ID=Msa0060760-mRNA-1:cds;Parent=Msa0060760-mRNA-1 |
| chr1_2 | CDS | 18613360 | 18613471 | 18613360 | ID=Msa0060760-mRNA-1:cds;Parent=Msa0060760-mRNA-1 |
| chr1_2 | CDS | 18613171 | 18613275 | 18613171 | ID=Msa0060760-mRNA-1:cds;Parent=Msa0060760-mRNA-1 |
| chr1_2 | three_prime_UTR | 18612589 | 18613170 | 18612589 | ID=Msa0060760-mRNA-1:three_prime_utr;Parent=Msa0060760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
