Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105120 | XP_003589617.1 | 99.422 | 173 | 1 | 0 | 1 | 173 | 1 | 173 | 2.46e-123 | 354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105120 | sp|Q9C6Z2|NUD25_ARATH | 77.714 | 175 | 37 | 1 | 1 | 173 | 1 | 175 | 4.98e-100 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105120 | G7I948 | 99.422 | 173 | 1 | 0 | 1 | 173 | 1 | 173 | 1.17e-123 | 354 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011930 | Msa0105120 | 0.830469 | 2.885144e-55 | -8.615850e-47 |
| Msa0016540 | Msa0105120 | 0.833238 | 5.982255e-56 | -8.615850e-47 |
| Msa0030990 | Msa0105120 | 0.824264 | 8.868411e-54 | -8.615850e-47 |
| Msa0039250 | Msa0105120 | 0.809952 | 1.467304e-50 | -8.615850e-47 |
| Msa0052870 | Msa0105120 | 0.805132 | 1.547144e-49 | -8.615850e-47 |
| Msa0060760 | Msa0105120 | 0.977636 | 3.535590e-144 | -8.615850e-47 |
| Msa0093850 | Msa0105120 | 0.853581 | 2.174589e-61 | -8.615850e-47 |
| Msa0098470 | Msa0105120 | 0.817481 | 3.225169e-52 | -8.615850e-47 |
| Msa0105120 | Msa0106620 | 0.803989 | 2.678302e-49 | -8.615850e-47 |
| Msa0105120 | Msa0108390 | 0.817977 | 2.492338e-52 | -8.615850e-47 |
| Msa0105120 | Msa0130110 | 0.821872 | 3.203862e-53 | -8.615850e-47 |
| Msa0105120 | Msa0133720 | 0.814718 | 1.336017e-51 | -8.615850e-47 |
| Msa0105120 | Msa0133820 | 0.803577 | 3.262138e-49 | -8.615850e-47 |
| Msa0105120 | Msa0138360 | 0.856923 | 2.316187e-62 | -8.615850e-47 |
| Msa0105120 | Msa0147980 | 0.842476 | 2.526607e-58 | -8.615850e-47 |
| Msa0105120 | Msa0151840 | 0.818467 | 1.931160e-52 | -8.615850e-47 |
| Msa0105120 | Msa0173890 | 0.819110 | 1.379439e-52 | -8.615850e-47 |
| Msa0105120 | Msa0175930 | 0.807316 | 5.365657e-50 | -8.615850e-47 |
| Msa0105120 | Msa0209140 | 0.801725 | 7.861550e-49 | -8.615850e-47 |
| Msa0105120 | Msa0221000 | 0.811571 | 6.549858e-51 | -8.615850e-47 |
| Msa0105120 | Msa0229920 | 0.803021 | 4.252595e-49 | -8.615850e-47 |
| Msa0105120 | Msa0240900 | 0.822485 | 2.310497e-53 | -8.615850e-47 |
| Msa0105120 | Msa0241830 | 0.836548 | 8.774961e-57 | -8.615850e-47 |
| Msa0105120 | Msa0261170 | 0.818558 | 1.841518e-52 | -8.615850e-47 |
| Msa0105120 | Msa0267920 | 0.801883 | 7.298381e-49 | -8.615850e-47 |
| Msa0105120 | Msa0279850 | 0.800958 | 1.128888e-48 | -8.615850e-47 |
| Msa0105120 | Msa0296250 | 0.822577 | 2.199550e-53 | -8.615850e-47 |
| Msa0105120 | Msa0300320 | 0.809866 | 1.531013e-50 | -8.615850e-47 |
| Msa0105120 | Msa0305780 | 0.802200 | 6.280940e-49 | -8.615850e-47 |
| Msa0105120 | Msa0307270 | 0.812185 | 4.813521e-51 | -8.615850e-47 |
| Msa0105120 | Msa0307570 | 0.801026 | 1.093333e-48 | -8.615850e-47 |
| Msa0105120 | Msa0317970 | 0.815027 | 1.140611e-51 | -8.615850e-47 |
| Msa0105120 | Msa0322900 | 0.845572 | 3.736149e-59 | -8.615850e-47 |
| Msa0105120 | Msa0332640 | 0.814570 | 1.440321e-51 | -8.615850e-47 |
| Msa0105120 | Msa0341690 | 0.846932 | 1.591829e-59 | -8.615850e-47 |
| Msa0105120 | Msa0357990 | 0.801289 | 9.658483e-49 | -8.615850e-47 |
| Msa0105120 | Msa0403660 | 0.804066 | 2.581569e-49 | -8.615850e-47 |
| Msa0105120 | Msa0479200 | 0.824507 | 7.774205e-54 | -8.615850e-47 |
| Msa0105120 | Msa0485240 | 0.804389 | 2.211873e-49 | -8.615850e-47 |
| Msa0105120 | Msa0518030 | 0.848738 | 5.061806e-60 | -8.615850e-47 |
| Msa0105120 | Msa0527190 | 0.848601 | 5.525299e-60 | -8.615850e-47 |
| Msa0105120 | Msa0547990 | 0.826525 | 2.586401e-54 | -8.615850e-47 |
| Msa0105120 | Msa0549360 | 0.807183 | 5.723417e-50 | -8.615850e-47 |
| Msa0105120 | Msa0581690 | 0.810239 | 1.272514e-50 | -8.615850e-47 |
| Msa0105120 | Msa0597770 | 0.804744 | 1.864448e-49 | -8.615850e-47 |
| Msa0105120 | Msa0626270 | 0.805647 | 1.206755e-49 | -8.615850e-47 |
| Msa0105120 | Msa0644030 | 0.828106 | 1.081247e-54 | -8.615850e-47 |
| Msa0105120 | Msa0693330 | 0.815560 | 8.682814e-52 | -8.615850e-47 |
| Msa0105120 | Msa0706760 | 0.804377 | 2.223906e-49 | -8.615850e-47 |
| Msa0105120 | Msa0711430 | 0.804960 | 1.680571e-49 | -8.615850e-47 |
| Msa0105120 | Msa0751260 | 0.802957 | 4.384085e-49 | -8.615850e-47 |
| Msa0105120 | Msa0832120 | 0.800983 | 1.115904e-48 | -8.615850e-47 |
| Msa0105120 | Msa0833530 | 0.807073 | 6.040996e-50 | -8.615850e-47 |
| Msa0105120 | Msa0835970 | 0.813019 | 3.164170e-51 | -8.615850e-47 |
| Msa0105120 | Msa0878510 | 0.818376 | 2.024327e-52 | -8.615850e-47 |
| Msa0105120 | Msa0944200 | 0.803780 | 2.960049e-49 | -8.615850e-47 |
| Msa0105120 | Msa0971650 | 0.804940 | 1.697083e-49 | -8.615850e-47 |
| Msa0105120 | Msa0993760 | 0.803950 | 2.728825e-49 | -8.615850e-47 |
| Msa0105120 | Msa1034500 | 0.826333 | 2.872833e-54 | -8.615850e-47 |
| Msa0105120 | Msa1059960 | 0.807335 | 5.316409e-50 | -8.615850e-47 |
| Msa0105120 | Msa1061980 | 0.803800 | 2.932011e-49 | -8.615850e-47 |
| Msa0105120 | Msa1085330 | 0.827032 | 1.956763e-54 | -8.615850e-47 |
| Msa0105120 | Msa1089450 | 0.828930 | 6.834388e-55 | -8.615850e-47 |
| Msa0105120 | Msa1094190 | 0.800881 | 1.170619e-48 | -8.615850e-47 |
| Msa0105120 | Msa1105160 | 0.810254 | 1.263000e-50 | -8.615850e-47 |
| Msa0105120 | Msa1127590 | 0.806335 | 8.649384e-50 | -8.615850e-47 |
| Msa0105120 | Msa1160920 | 0.808114 | 3.631773e-50 | -8.615850e-47 |
| Msa0105120 | Msa1328640 | 0.801450 | 8.951471e-49 | -8.615850e-47 |
| Msa0105120 | Msa1348090 | 0.841133 | 5.714670e-58 | -8.615850e-47 |
| Msa0105120 | Msa1360980 | 0.801716 | 7.895948e-49 | -8.615850e-47 |
| Msa0105120 | Msa1371520 | 0.851871 | 6.689071e-61 | -8.615850e-47 |
| Msa0105120 | Msa1385890 | 0.804028 | 2.629135e-49 | -8.615850e-47 |
| Msa0105120 | Msa1409950 | 0.812343 | 4.446861e-51 | -8.615850e-47 |
| Msa0105120 | Msa1418240 | 0.811889 | 5.586257e-51 | -8.615850e-47 |
| Msa0105120 | Msa1425880 | 0.803361 | 3.616443e-49 | -8.615850e-47 |
| Msa0105120 | Msa1459460 | 0.806437 | 8.231501e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105120 | MtrunA17_Chr1g0160501 | 99.422 | 173 | 1 | 0 | 1 | 173 | 1 | 173 | 2.26e-127 | 354 |
| Msa0105120 | MtrunA17_Chr1g0197081 | 59.627 | 161 | 64 | 1 | 1 | 160 | 42 | 202 | 7.16e-71 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105120 | AT1G30110.2 | 77.714 | 175 | 37 | 1 | 1 | 173 | 1 | 175 | 5.06e-101 | 288 |
| Msa0105120 | AT1G30110.1 | 77.714 | 175 | 37 | 1 | 1 | 173 | 1 | 175 | 5.06e-101 | 288 |
| Msa0105120 | AT3G10620.1 | 57.764 | 161 | 67 | 1 | 1 | 160 | 56 | 216 | 2.00e-68 | 207 |
| Msa0105120 | AT5G06340.1 | 56.250 | 160 | 69 | 1 | 1 | 159 | 55 | 214 | 1.57e-62 | 192 |
Find 78 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTCCACTCTGCAAATTC+TGG | 0.093641 | 1_3:+13373187 | None:intergenic |
| CCCGGTTTAGAAAATAAATT+TGG | 0.192294 | 1_3:+13372575 | None:intergenic |
| TTCTCTAATAGCAGCAGATT+TGG | 0.244965 | 1_3:+13373983 | None:intergenic |
| CTCAGTAAGTGAAATGGATT+TGG | 0.268607 | 1_3:+13372691 | None:intergenic |
| AACACTCAACTATTTGTAAA+TGG | 0.270794 | 1_3:-13372659 | Msa0105120:three_prime_UTR |
| TAAACTTCTTCTTCTCTCTA+AGG | 0.276839 | 1_3:-13375183 | Msa0105120:five_prime_UTR |
| CAGAATTTGCAGAGTGGAAA+TGG | 0.298244 | 1_3:-13373186 | Msa0105120:CDS |
| GGCTAAAGTCAATCGTCTTT+GGG | 0.307296 | 1_3:-13373611 | Msa0105120:CDS |
| TTCGCGTACATCTGTGCCTT+TGG | 0.307652 | 1_3:-13372860 | Msa0105120:three_prime_UTR |
| TAGCTGTTACTTGTTATTGT+TGG | 0.319130 | 1_3:+13375154 | None:intergenic |
| CAAAATTGTTCCTTGTACTT+AGG | 0.322157 | 1_3:+13372484 | None:intergenic |
| ACCTGCTCAATAACTTCTTC+AGG | 0.335949 | 1_3:+13373157 | None:intergenic |
| AGGCTAAAGTCAATCGTCTT+TGG | 0.336576 | 1_3:-13373612 | Msa0105120:CDS |
| AGTGAAATTAGATAAGAAAA+TGG | 0.345012 | 1_3:+13372919 | None:intergenic |
| GTTGCATTTCCTTGAAAGTA+AGG | 0.354258 | 1_3:+13373001 | None:intergenic |
| ACCTTCAAGCCTTACTTTCA+AGG | 0.360232 | 1_3:-13373010 | Msa0105120:CDS |
| GTGCATTACAGGTTGATAAA+TGG | 0.375642 | 1_3:-13373663 | Msa0105120:intron |
| TCTCTAATAGCAGCAGATTT+GGG | 0.380677 | 1_3:+13373984 | None:intergenic |
| TCGCGTACATCTGTGCCTTT+GGG | 0.385910 | 1_3:-13372859 | Msa0105120:three_prime_UTR |
| GCTTCCAGATTGAATGTTCC+AGG | 0.385919 | 1_3:-13374171 | Msa0105120:CDS |
| ATTTCCACTCTGCAAATTCT+GGG | 0.388442 | 1_3:+13373188 | None:intergenic |
| GGTTGTTACAACTTCTTCAT+AGG | 0.389048 | 1_3:+13373030 | None:intergenic |
| CTGAAATGACATCATGTTTG+AGG | 0.390357 | 1_3:-13372391 | Msa0105120:three_prime_UTR |
| GGTAGTTAGAACTTTCCATT+AGG | 0.400278 | 1_3:-13372634 | Msa0105120:three_prime_UTR |
| TCCATTTCACTTACTGAGGT+TGG | 0.401653 | 1_3:-13372686 | Msa0105120:three_prime_UTR |
| AGAGAACTTCGAGAAGAAAC+TGG | 0.413791 | 1_3:-13373966 | Msa0105120:CDS |
| TACAAGAAGCAAGTACCTAA+TGG | 0.421481 | 1_3:+13372619 | None:intergenic |
| TCTCATCAATTCAGATGATC+AGG | 0.421614 | 1_3:-13375083 | Msa0105120:intron |
| TCCTTGAAAGTAAGGCTTGA+AGG | 0.425267 | 1_3:+13373009 | None:intergenic |
| TCCAACCTCAGTAAGTGAAA+TGG | 0.425402 | 1_3:+13372685 | None:intergenic |
| TGAGGCATTTGCCATGCTCC+TGG | 0.426678 | 1_3:+13374153 | None:intergenic |
| AAATTCTGGGTCTGCTTCAC+CGG | 0.426680 | 1_3:+13373201 | None:intergenic |
| TTTCAGAGAACATGTTAGAA+TGG | 0.445184 | 1_3:+13372408 | None:intergenic |
| TGCTCCTGGAACATTCAATC+TGG | 0.446702 | 1_3:+13374167 | None:intergenic |
| AGGAGCATGGCAAATGCCTC+AGG | 0.465802 | 1_3:-13374151 | Msa0105120:intron |
| GAACATGTTAGAATGGTTGA+TGG | 0.481954 | 1_3:+13372415 | None:intergenic |
| AAAATATCGAGCTTGAAATC+CGG | 0.488170 | 1_3:+13372821 | None:intergenic |
| CCTGCTCAATAACTTCTTCA+GGG | 0.490006 | 1_3:+13373158 | None:intergenic |
| CCCTGAAGAAGTTATTGAGC+AGG | 0.490394 | 1_3:-13373158 | Msa0105120:intron |
| GTGTTGACAGTGCGAACGTA+TGG | 0.490885 | 1_3:-13372733 | Msa0105120:three_prime_UTR |
| ACGCGAATGCTTGAAATTTG+TGG | 0.493230 | 1_3:+13372876 | None:intergenic |
| GGCATGGACAGGCACAGAAA+TGG | 0.494440 | 1_3:-13373579 | Msa0105120:intron |
| AGAATTTGCAGAGTGGAAAT+GGG | 0.503598 | 1_3:-13373185 | Msa0105120:CDS |
| TGGGTCAAAATCAGACAATC+CGG | 0.506184 | 1_3:-13372840 | Msa0105120:three_prime_UTR |
| GTTACAACTTCTTCATAGGT+AGG | 0.511880 | 1_3:+13373034 | None:intergenic |
| GGGAGGAGAATGGCATGGAC+AGG | 0.513397 | 1_3:-13373590 | Msa0105120:CDS |
| ATGAGACAGACACCAACGTT+AGG | 0.524807 | 1_3:+13375100 | None:intergenic |
| ATCGTCTTTGGGGAGGAGAA+TGG | 0.528661 | 1_3:-13373600 | Msa0105120:CDS |
| TTGACTTTAGCCTTCACAGC+AGG | 0.532701 | 1_3:+13373622 | None:intergenic |
| TTGTTTATAACTTAAGTACA+AGG | 0.537609 | 1_3:-13372464 | Msa0105120:three_prime_UTR |
| TGACTTCCCTCCTGCTGTGA+AGG | 0.542301 | 1_3:-13373632 | Msa0105120:CDS |
| CTCAACTATTTGTAAATGGA+TGG | 0.543339 | 1_3:-13372655 | Msa0105120:three_prime_UTR |
| CAAATCCATTTCACTTACTG+AGG | 0.549203 | 1_3:-13372690 | Msa0105120:three_prime_UTR |
| TCACAATCATCCTCGCAGCC+CGG | 0.551358 | 1_3:+13372557 | None:intergenic |
| ACTTTAGCCTTCACAGCAGG+AGG | 0.558265 | 1_3:+13373625 | None:intergenic |
| ATGCTTGAAATTTGTGGCTG+CGG | 0.559269 | 1_3:+13372882 | None:intergenic |
| GATTGAATGTTCCAGGAGCA+TGG | 0.573208 | 1_3:-13374164 | Msa0105120:CDS |
| TTCTGGGTCTGCTTCACCGG+TGG | 0.576581 | 1_3:+13373204 | None:intergenic |
| CAACACAGACACAACACAAG+TGG | 0.577641 | 1_3:+13375272 | None:intergenic |
| GAGGTGTGAATGATGAGTAC+TGG | 0.579208 | 1_3:+13375246 | None:intergenic |
| TTCGCACTGTCAACACGTGT+TGG | 0.590594 | 1_3:+13372740 | None:intergenic |
| ATAGTATTGTATTGTGAATG+TGG | 0.598793 | 1_3:+13375310 | None:intergenic |
| TGACTTGATACCTAAGTACA+AGG | 0.602640 | 1_3:-13372494 | Msa0105120:three_prime_UTR |
| GCTAAAGTCAATCGTCTTTG+GGG | 0.604526 | 1_3:-13373610 | Msa0105120:CDS |
| GTGTTGTGTTAGAGATGATG+AGG | 0.609871 | 1_3:+13375227 | None:intergenic |
| AACAAGTAACAGCTAAGACA+TGG | 0.618371 | 1_3:-13375146 | Msa0105120:exon |
| CGAAATGTAAATCGACAAAG+TGG | 0.620980 | 1_3:-13372973 | Msa0105120:CDS |
| CTTTGGGGAGGAGAATGGCA+TGG | 0.624852 | 1_3:-13373595 | Msa0105120:CDS |
| GACAGACACCAACGTTAGGA+CGG | 0.631134 | 1_3:+13375104 | None:intergenic |
| GGTGAAATCAACTTAGCCAC+CGG | 0.634355 | 1_3:-13373220 | Msa0105120:CDS |
| CTTTAGCCTTCACAGCAGGA+GGG | 0.649727 | 1_3:+13373626 | None:intergenic |
| AAAGTCAATCGTCTTTGGGG+AGG | 0.655166 | 1_3:-13373607 | Msa0105120:CDS |
| ACGTTAGGACGGTAACCTTG+TGG | 0.657862 | 1_3:+13375115 | None:intergenic |
| GTCTGCTGAGATAATCGCTG+AGG | 0.670608 | 1_3:-13373937 | Msa0105120:intron |
| GTATAGATCTGTTGATGTCG+CGG | 0.674346 | 1_3:-13372528 | Msa0105120:three_prime_UTR |
| CAGACCCAGAATTTGCAGAG+TGG | 0.693037 | 1_3:-13373192 | Msa0105120:CDS |
| CAAGGTTACCGTCCTAACGT+TGG | 0.707808 | 1_3:-13375112 | Msa0105120:CDS |
| GACATGGAGAATCTTCCACA+AGG | 0.720171 | 1_3:-13375130 | Msa0105120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTGTTTATAGATTTT+AGG | - | chr1_3:13372858-13372877 | Msa0105120:three_prime_UTR | 10.0% |
| !!! | ATTATTTAAGTTATTTGAAT+TGG | + | chr1_3:13373608-13373627 | None:intergenic | 10.0% |
| !! | AAACAAAAGAAAAAAAAAGA+TGG | + | chr1_3:13372651-13372670 | None:intergenic | 15.0% |
| !!! | ATTTTTCCATAATTCATTTT+TGG | - | chr1_3:13372918-13372937 | Msa0105120:three_prime_UTR | 15.0% |
| !!! | ATATTTTTTCGAGTAAAATT+TGG | - | chr1_3:13374314-13374333 | Msa0105120:intron | 15.0% |
| !! | ATGAAATTAAAAAAAGATGA+CGG | - | chr1_3:13374454-13374473 | Msa0105120:intron | 15.0% |
| !! | TGAAAATTTAGGTAAGAATA+TGG | - | chr1_3:13372705-13372724 | Msa0105120:three_prime_UTR | 20.0% |
| !!! | TGTTGTTTGTAGATATTTTT+TGG | - | chr1_3:13372833-13372852 | Msa0105120:three_prime_UTR | 20.0% |
| !!! | TGAAGTTGATTTATACTTTA+AGG | + | chr1_3:13373044-13373063 | None:intergenic | 20.0% |
| !! | TAAACTGTTATAGCATATAT+AGG | + | chr1_3:13373399-13373418 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTTCAGATATTTG+TGG | - | chr1_3:13373502-13373521 | Msa0105120:intron | 20.0% |
| !!! | AATTTTTTGACTGTTCTTTT+GGG | - | chr1_3:13373656-13373675 | Msa0105120:intron | 20.0% |
| !!! | ACAAAAGCATATATTAACAA+TGG | - | chr1_3:13374198-13374217 | Msa0105120:intron | 20.0% |
| !!! | TCTTTTGTTATTAATAAGCA+TGG | - | chr1_3:13374353-13374372 | Msa0105120:intron | 20.0% |
| !! | ATCAATTACGAACATTTAAT+AGG | - | chr1_3:13374425-13374444 | Msa0105120:intron | 20.0% |
| !! | GAAAAATACATAATTGTTAC+AGG | + | chr1_3:13374581-13374600 | None:intergenic | 20.0% |
| !! | AGTGAAATTAGATAAGAAAA+TGG | + | chr1_3:13374779-13374798 | None:intergenic | 20.0% |
| !!! | TTTTCTTATCTAATTTCACT+TGG | - | chr1_3:13374779-13374798 | Msa0105120:intron | 20.0% |
| !! | TTGTTTATAACTTAAGTACA+AGG | - | chr1_3:13375231-13375250 | Msa0105120:five_prime_UTR | 20.0% |
| ! | ATAGTATTGTATTGTGAATG+TGG | + | chr1_3:13372388-13372407 | None:intergenic | 25.0% |
| !! | AACCTTTTCTGAATCTATTT+TGG | - | chr1_3:13372749-13372768 | Msa0105120:three_prime_UTR | 25.0% |
| ! | AACCAAAATAGATTCAGAAA+AGG | + | chr1_3:13372754-13372773 | None:intergenic | 25.0% |
| !!! | TTCTGAATCTATTTTGGTTT+TGG | - | chr1_3:13372755-13372774 | Msa0105120:three_prime_UTR | 25.0% |
| !!! | TTCCATAATTCATTTTTGGT+TGG | - | chr1_3:13372922-13372941 | Msa0105120:three_prime_UTR | 25.0% |
| ! | AACCAACCAAAAATGAATTA+TGG | + | chr1_3:13372927-13372946 | None:intergenic | 25.0% |
| !!! | TTTGGTTGGTTTTCTATTTT+TGG | - | chr1_3:13372936-13372955 | Msa0105120:three_prime_UTR | 25.0% |
| !!! | TTATATTTTTGTTAACCCTC+TGG | - | chr1_3:13373112-13373131 | Msa0105120:intron | 25.0% |
| !! | TGATTAATGTTTTCCATCAA+AGG | + | chr1_3:13373238-13373257 | None:intergenic | 25.0% |
| !!! | TTAAAGCAAAGTGTTTTTCT+TGG | - | chr1_3:13373293-13373312 | Msa0105120:intron | 25.0% |
| ! | ATATGCTATAACAGTTTACT+AGG | - | chr1_3:13373401-13373420 | Msa0105120:intron | 25.0% |
| ! | TATAACAGTTTACTAGGAAT+TGG | - | chr1_3:13373407-13373426 | Msa0105120:intron | 25.0% |
| !!! | CAATTTTTTGACTGTTCTTT+TGG | - | chr1_3:13373655-13373674 | Msa0105120:CDS | 25.0% |
| !!! | ATTTTTTGACTGTTCTTTTG+GGG | - | chr1_3:13373657-13373676 | Msa0105120:intron | 25.0% |
| ! | AACTAAATGCAGAAAAGAAA+AGG | + | chr1_3:13373795-13373814 | None:intergenic | 25.0% |
| ! | AAGAGAAACATTTAAGAATG+TGG | + | chr1_3:13374176-13374195 | None:intergenic | 25.0% |
| !!! | TTTGTTATTAATAAGCATGG+TGG | - | chr1_3:13374356-13374375 | Msa0105120:intron | 25.0% |
| ! | ACAAAGTCAGTATTTCTTAT+TGG | - | chr1_3:13374390-13374409 | Msa0105120:intron | 25.0% |
| ! | TGTTTGAAAAACTAATCACT+GGG | - | chr1_3:13374603-13374622 | Msa0105120:intron | 25.0% |
| ! | AACACTCAACTATTTGTAAA+TGG | - | chr1_3:13375036-13375055 | Msa0105120:intron | 25.0% |
| !!! | GCCAAATTTATTTTCTAAAC+CGG | - | chr1_3:13375119-13375138 | Msa0105120:CDS | 25.0% |
| !!! | CCAAATTTATTTTCTAAACC+GGG | - | chr1_3:13375120-13375139 | Msa0105120:CDS | 25.0% |
| TAAACTTCTTCTTCTCTCTA+AGG | - | chr1_3:13372512-13372531 | Msa0105120:three_prime_UTR | 30.0% | |
| !! | TAGCTGTTACTTGTTATTGT+TGG | + | chr1_3:13372544-13372563 | None:intergenic | 30.0% |
| GAATATGGTGTCTTAATCTA+AGG | - | chr1_3:13372720-13372739 | Msa0105120:three_prime_UTR | 30.0% | |
| CACACTACATTAATATCTGA+CGG | + | chr1_3:13372805-13372824 | None:intergenic | 30.0% | |
| ! | ATTTTAGGCTCTACTAAAGT+TGG | - | chr1_3:13372873-13372892 | Msa0105120:three_prime_UTR | 30.0% |
| !! | GTTGATTTATACTTTAAGGC+TGG | + | chr1_3:13373040-13373059 | None:intergenic | 30.0% |
| TGGCTAGATTTGGAAAATTT+AGG | - | chr1_3:13373313-13373332 | Msa0105120:intron | 30.0% | |
| GTATACTAGTACATAATGTG+AGG | + | chr1_3:13373573-13373592 | None:intergenic | 30.0% | |
| AGAACAGTCAAAAAATTGCT+CGG | + | chr1_3:13373653-13373672 | None:intergenic | 30.0% | |
| !! | AGAAATACTGACTTTGTTAG+CGG | + | chr1_3:13374387-13374406 | None:intergenic | 30.0% |
| CTGTTTGAAAAACTAATCAC+TGG | - | chr1_3:13374602-13374621 | Msa0105120:intron | 30.0% | |
| AAAATATCGAGCTTGAAATC+CGG | + | chr1_3:13374877-13374896 | None:intergenic | 30.0% | |
| CTCAACTATTTGTAAATGGA+TGG | - | chr1_3:13375040-13375059 | Msa0105120:intron | 30.0% | |
| CCCGGTTTAGAAAATAAATT+TGG | + | chr1_3:13375123-13375142 | None:intergenic | 30.0% | |
| CAAAATTGTTCCTTGTACTT+AGG | + | chr1_3:13375214-13375233 | None:intergenic | 30.0% | |
| TTTCAGAGAACATGTTAGAA+TGG | + | chr1_3:13375290-13375309 | None:intergenic | 30.0% | |
| AACAAGTAACAGCTAAGACA+TGG | - | chr1_3:13372549-13372568 | Msa0105120:three_prime_UTR | 35.0% | |
| TCTCATCAATTCAGATGATC+AGG | - | chr1_3:13372612-13372631 | Msa0105120:three_prime_UTR | 35.0% | |
| GATTTCTGTGGAACAATTCT+TGG | + | chr1_3:13373189-13373208 | None:intergenic | 35.0% | |
| CAATCTAGATTCGATTTCTG+TGG | + | chr1_3:13373201-13373220 | None:intergenic | 35.0% | |
| TAACCGTAAACCAAGTGATT+GGG | + | chr1_3:13373267-13373286 | None:intergenic | 35.0% | |
| ATAACCGTAAACCAAGTGAT+TGG | + | chr1_3:13373268-13373287 | None:intergenic | 35.0% | |
| ! | GTGTTTTTCTTGGCTAGATT+TGG | - | chr1_3:13373303-13373322 | Msa0105120:intron | 35.0% |
| ! | TAATTTGTATGACTACGACG+AGG | - | chr1_3:13373458-13373477 | Msa0105120:intron | 35.0% |
| !!! | ACTGTTCTTTTGGGGTTTTT+AGG | - | chr1_3:13373665-13373684 | Msa0105120:intron | 35.0% |
| !!! | CTGTTCTTTTGGGGTTTTTA+GGG | - | chr1_3:13373666-13373685 | Msa0105120:intron | 35.0% |
| !!! | TTTTAGGGAGGTATTGAAGA+TGG | - | chr1_3:13373681-13373700 | Msa0105120:intron | 35.0% |
| TCTCTAATAGCAGCAGATTT+GGG | + | chr1_3:13373714-13373733 | None:intergenic | 35.0% | |
| TTCTCTAATAGCAGCAGATT+TGG | + | chr1_3:13373715-13373734 | None:intergenic | 35.0% | |
| ATCAATACTCCATAGAGCAT+CGG | + | chr1_3:13373856-13373875 | None:intergenic | 35.0% | |
| !! | GTGCATTACAGGTTGATAAA+TGG | - | chr1_3:13374032-13374051 | Msa0105120:intron | 35.0% |
| TGCATCAATGAAAGCGATAT+AGG | - | chr1_3:13374246-13374265 | Msa0105120:intron | 35.0% | |
| CGAAAAAATATCACGAGACA+AGG | + | chr1_3:13374305-13374324 | None:intergenic | 35.0% | |
| ATTTCCACTCTGCAAATTCT+GGG | + | chr1_3:13374510-13374529 | None:intergenic | 35.0% | |
| AGAATTTGCAGAGTGGAAAT+GGG | - | chr1_3:13374510-13374529 | Msa0105120:intron | 35.0% | |
| GTTACAACTTCTTCATAGGT+AGG | + | chr1_3:13374664-13374683 | None:intergenic | 35.0% | |
| GGTTGTTACAACTTCTTCAT+AGG | + | chr1_3:13374668-13374687 | None:intergenic | 35.0% | |
| GTTGCATTTCCTTGAAAGTA+AGG | + | chr1_3:13374697-13374716 | None:intergenic | 35.0% | |
| CGAAATGTAAATCGACAAAG+TGG | - | chr1_3:13374722-13374741 | Msa0105120:intron | 35.0% | |
| !! | ATTGTCTGATTTTGACCCAA+AGG | + | chr1_3:13374854-13374873 | None:intergenic | 35.0% |
| ! | CTCAGTAAGTGAAATGGATT+TGG | + | chr1_3:13375007-13375026 | None:intergenic | 35.0% |
| CAAATCCATTTCACTTACTG+AGG | - | chr1_3:13375005-13375024 | Msa0105120:intron | 35.0% | |
| GGTAGTTAGAACTTTCCATT+AGG | - | chr1_3:13375061-13375080 | Msa0105120:intron | 35.0% | |
| TACAAGAAGCAAGTACCTAA+TGG | + | chr1_3:13375079-13375098 | None:intergenic | 35.0% | |
| TGACTTGATACCTAAGTACA+AGG | - | chr1_3:13375201-13375220 | Msa0105120:five_prime_UTR | 35.0% | |
| GAACATGTTAGAATGGTTGA+TGG | + | chr1_3:13375283-13375302 | None:intergenic | 35.0% | |
| CTGAAATGACATCATGTTTG+AGG | - | chr1_3:13375304-13375323 | Msa0105120:five_prime_UTR | 35.0% | |
| GTGTTGTGTTAGAGATGATG+AGG | + | chr1_3:13372471-13372490 | None:intergenic | 40.0% | |
| TCCATCAAAGGACAATCGTT+CGG | + | chr1_3:13373226-13373245 | None:intergenic | 40.0% | |
| CAGTTTACTAGGAATTGGAG+AGG | - | chr1_3:13373412-13373431 | Msa0105120:intron | 40.0% | |
| !!! | TTCTTTTGGGGTTTTTAGGG+AGG | - | chr1_3:13373669-13373688 | Msa0105120:intron | 40.0% |
| AGAGAACTTCGAGAAGAAAC+TGG | - | chr1_3:13373729-13373748 | Msa0105120:intron | 40.0% | |
| ATTTCTCTGCGATAACTCAG+TGG | - | chr1_3:13373977-13373996 | Msa0105120:CDS | 40.0% | |
| TGACAGTGTTTGTGCATTAC+AGG | - | chr1_3:13374021-13374040 | Msa0105120:intron | 40.0% | |
| AGGCTAAAGTCAATCGTCTT+TGG | - | chr1_3:13374083-13374102 | Msa0105120:intron | 40.0% | |
| GGCTAAAGTCAATCGTCTTT+GGG | - | chr1_3:13374084-13374103 | Msa0105120:intron | 40.0% | |
| GCTAAAGTCAATCGTCTTTG+GGG | - | chr1_3:13374085-13374104 | Msa0105120:intron | 40.0% | |
| CATTTCCACTCTGCAAATTC+TGG | + | chr1_3:13374511-13374530 | None:intergenic | 40.0% | |
| CAGAATTTGCAGAGTGGAAA+TGG | - | chr1_3:13374509-13374528 | Msa0105120:intron | 40.0% | |
| CCTGCTCAATAACTTCTTCA+GGG | + | chr1_3:13374540-13374559 | None:intergenic | 40.0% | |
| ACCTGCTCAATAACTTCTTC+AGG | + | chr1_3:13374541-13374560 | None:intergenic | 40.0% | |
| CTGGGCTAATAATCGATTAC+AGG | - | chr1_3:13374621-13374640 | Msa0105120:intron | 40.0% | |
| GGCTAATAATCGATTACAGG+CGG | - | chr1_3:13374624-13374643 | Msa0105120:intron | 40.0% | |
| TAATAATCGATTACAGGCGG+TGG | - | chr1_3:13374627-13374646 | Msa0105120:intron | 40.0% | |
| ACCTTCAAGCCTTACTTTCA+AGG | - | chr1_3:13374685-13374704 | Msa0105120:intron | 40.0% | |
| TCCTTGAAAGTAAGGCTTGA+AGG | + | chr1_3:13374689-13374708 | None:intergenic | 40.0% | |
| ATGCTTGAAATTTGTGGCTG+CGG | + | chr1_3:13374816-13374835 | None:intergenic | 40.0% | |
| ACGCGAATGCTTGAAATTTG+TGG | + | chr1_3:13374822-13374841 | None:intergenic | 40.0% | |
| TGGGTCAAAATCAGACAATC+CGG | - | chr1_3:13374855-13374874 | Msa0105120:intron | 40.0% | |
| TCCATTTCACTTACTGAGGT+TGG | - | chr1_3:13375009-13375028 | Msa0105120:intron | 40.0% | |
| TCCAACCTCAGTAAGTGAAA+TGG | + | chr1_3:13375013-13375032 | None:intergenic | 40.0% | |
| GTATAGATCTGTTGATGTCG+CGG | - | chr1_3:13375167-13375186 | Msa0105120:five_prime_UTR | 40.0% | |
| CAACACAGACACAACACAAG+TGG | + | chr1_3:13372426-13372445 | None:intergenic | 45.0% | |
| GAGGTGTGAATGATGAGTAC+TGG | + | chr1_3:13372452-13372471 | None:intergenic | 45.0% | |
| GACATGGAGAATCTTCCACA+AGG | - | chr1_3:13372565-13372584 | Msa0105120:three_prime_UTR | 45.0% | |
| ATGAGACAGACACCAACGTT+AGG | + | chr1_3:13372598-13372617 | None:intergenic | 45.0% | |
| ! | TTGTTAACCCTCTGGTTCAG+TGG | - | chr1_3:13373120-13373139 | Msa0105120:intron | 45.0% |
| GGAAGGACCTGATAATTCGT+CGG | - | chr1_3:13373141-13373160 | Msa0105120:intron | 45.0% | |
| TTCACGACCGACGAATTATC+AGG | + | chr1_3:13373151-13373170 | None:intergenic | 45.0% | |
| CCATCAAAGGACAATCGTTC+GGG | + | chr1_3:13373225-13373244 | None:intergenic | 45.0% | |
| ATCACTTGAGCCCAATCACT+TGG | - | chr1_3:13373254-13373273 | Msa0105120:intron | 45.0% | |
| GAGCCCAATCACTTGGTTTA+CGG | - | chr1_3:13373261-13373280 | Msa0105120:intron | 45.0% | |
| TTGTATGACTACGACGAGGA+AGG | - | chr1_3:13373462-13373481 | Msa0105120:intron | 45.0% | |
| TGTATGACTACGACGAGGAA+GGG | - | chr1_3:13373463-13373482 | Msa0105120:intron | 45.0% | |
| GCTTCCAGATTGAATGTTCC+AGG | - | chr1_3:13373524-13373543 | Msa0105120:intron | 45.0% | |
| TGCTCCTGGAACATTCAATC+TGG | + | chr1_3:13373531-13373550 | None:intergenic | 45.0% | |
| GATTGAATGTTCCAGGAGCA+TGG | - | chr1_3:13373531-13373550 | Msa0105120:intron | 45.0% | |
| ACATAATGTGAGGTCACCTG+AGG | + | chr1_3:13373563-13373582 | None:intergenic | 45.0% | |
| ! | TTGACTTTAGCCTTCACAGC+AGG | + | chr1_3:13374076-13374095 | None:intergenic | 45.0% |
| ! | AAAGTCAATCGTCTTTGGGG+AGG | - | chr1_3:13374088-13374107 | Msa0105120:intron | 45.0% |
| CATTTACTCCATGCACACTC+AGG | + | chr1_3:13374275-13374294 | None:intergenic | 45.0% | |
| CTGAGTGTGCATGGAGTAAA+TGG | - | chr1_3:13374273-13374292 | Msa0105120:intron | 45.0% | |
| GGTGAAATCAACTTAGCCAC+CGG | - | chr1_3:13374475-13374494 | Msa0105120:intron | 45.0% | |
| AAATTCTGGGTCTGCTTCAC+CGG | + | chr1_3:13374497-13374516 | None:intergenic | 45.0% | |
| CCCTGAAGAAGTTATTGAGC+AGG | - | chr1_3:13374537-13374556 | Msa0105120:intron | 45.0% | |
| !!! | TTTTTTATTAATGAAAATTT+AGG | - | chr1_3:13372694-13372713 | Msa0105120:three_prime_UTR | 5.0% |
| ACGTTAGGACGGTAACCTTG+TGG | + | chr1_3:13372583-13372602 | None:intergenic | 50.0% | |
| CAAGGTTACCGTCCTAACGT+TGG | - | chr1_3:13372583-13372602 | Msa0105120:three_prime_UTR | 50.0% | |
| GACAGACACCAACGTTAGGA+CGG | + | chr1_3:13372594-13372613 | None:intergenic | 50.0% | |
| ! | TAACCCTCTGGTTCAGTGGA+AGG | - | chr1_3:13373124-13373143 | Msa0105120:intron | 50.0% |
| CCCGAACGATTGTCCTTTGA+TGG | - | chr1_3:13373222-13373241 | Msa0105120:CDS | 50.0% | |
| ACGACGAGGAAGGGAAATCA+TGG | - | chr1_3:13373472-13373491 | Msa0105120:intron | 50.0% | |
| GTCTGCTGAGATAATCGCTG+AGG | - | chr1_3:13373758-13373777 | Msa0105120:intron | 50.0% | |
| TACGTCTTGCCGATGCTCTA+TGG | - | chr1_3:13373844-13373863 | Msa0105120:intron | 50.0% | |
| ! | CTTTAGCCTTCACAGCAGGA+GGG | + | chr1_3:13374072-13374091 | None:intergenic | 50.0% |
| ! | ACTTTAGCCTTCACAGCAGG+AGG | + | chr1_3:13374073-13374092 | None:intergenic | 50.0% |
| ! | ATCGTCTTTGGGGAGGAGAA+TGG | - | chr1_3:13374095-13374114 | Msa0105120:intron | 50.0% |
| ATAGGAAGCCTGAGTGTGCA+TGG | - | chr1_3:13374264-13374283 | Msa0105120:intron | 50.0% | |
| CAGACCCAGAATTTGCAGAG+TGG | - | chr1_3:13374503-13374522 | Msa0105120:intron | 50.0% | |
| TTCGCGTACATCTGTGCCTT+TGG | - | chr1_3:13374835-13374854 | Msa0105120:intron | 50.0% | |
| TCGCGTACATCTGTGCCTTT+GGG | - | chr1_3:13374836-13374855 | Msa0105120:intron | 50.0% | |
| TTCGCACTGTCAACACGTGT+TGG | + | chr1_3:13374958-13374977 | None:intergenic | 50.0% | |
| ! | GTGTTGACAGTGCGAACGTA+TGG | - | chr1_3:13374962-13374981 | Msa0105120:intron | 50.0% |
| ! | ATTTTCTAAACCGGGCTGCG+AGG | - | chr1_3:13375128-13375147 | Msa0105120:CDS | 50.0% |
| GGTCCTTCCACTGAACCAGA+GGG | + | chr1_3:13373130-13373149 | None:intergenic | 55.0% | |
| AGGTCCTTCCACTGAACCAG+AGG | + | chr1_3:13373131-13373150 | None:intergenic | 55.0% | |
| ! | TGAGGCATTTGCCATGCTCC+TGG | + | chr1_3:13373545-13373564 | None:intergenic | 55.0% |
| ! | AGGAGCATGGCAAATGCCTC+AGG | - | chr1_3:13373544-13373563 | Msa0105120:intron | 55.0% |
| TGACTTCCCTCCTGCTGTGA+AGG | - | chr1_3:13374063-13374082 | Msa0105120:intron | 55.0% | |
| ! | CTTTGGGGAGGAGAATGGCA+TGG | - | chr1_3:13374100-13374119 | Msa0105120:intron | 55.0% |
| GGCATGGACAGGCACAGAAA+TGG | - | chr1_3:13374116-13374135 | Msa0105120:intron | 55.0% | |
| TCACAATCATCCTCGCAGCC+CGG | + | chr1_3:13375141-13375160 | None:intergenic | 55.0% | |
| GGGAGGAGAATGGCATGGAC+AGG | - | chr1_3:13374105-13374124 | Msa0105120:intron | 60.0% | |
| TTCTGGGTCTGCTTCACCGG+TGG | + | chr1_3:13374494-13374513 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 13372384 | 13375333 | 13372384 | ID=Msa0105120;Name=Msa0105120 |
| chr1_3 | mRNA | 13372384 | 13375333 | 13372384 | ID=Msa0105120-mRNA-1;Parent=Msa0105120;Name=Msa0105120-mRNA-1;_AED=0.14;_eAED=0.14;_QI=184|1|1|1|1|1|6|586|173 |
| chr1_3 | exon | 13372384 | 13373074 | 13372384 | ID=Msa0105120-mRNA-1:exon:5260;Parent=Msa0105120-mRNA-1 |
| chr1_3 | exon | 13373159 | 13373270 | 13373159 | ID=Msa0105120-mRNA-1:exon:5259;Parent=Msa0105120-mRNA-1 |
| chr1_3 | exon | 13373580 | 13373674 | 13373580 | ID=Msa0105120-mRNA-1:exon:5258;Parent=Msa0105120-mRNA-1 |
| chr1_3 | exon | 13373938 | 13374030 | 13373938 | ID=Msa0105120-mRNA-1:exon:5257;Parent=Msa0105120-mRNA-1 |
| chr1_3 | exon | 13374152 | 13374202 | 13374152 | ID=Msa0105120-mRNA-1:exon:5256;Parent=Msa0105120-mRNA-1 |
| chr1_3 | exon | 13375084 | 13375333 | 13375084 | ID=Msa0105120-mRNA-1:exon:5255;Parent=Msa0105120-mRNA-1 |
| chr1_3 | five_prime_UTR | 13375150 | 13375333 | 13375150 | ID=Msa0105120-mRNA-1:five_prime_utr;Parent=Msa0105120-mRNA-1 |
| chr1_3 | CDS | 13375084 | 13375149 | 13375084 | ID=Msa0105120-mRNA-1:cds;Parent=Msa0105120-mRNA-1 |
| chr1_3 | CDS | 13374152 | 13374202 | 13374152 | ID=Msa0105120-mRNA-1:cds;Parent=Msa0105120-mRNA-1 |
| chr1_3 | CDS | 13373938 | 13374030 | 13373938 | ID=Msa0105120-mRNA-1:cds;Parent=Msa0105120-mRNA-1 |
| chr1_3 | CDS | 13373580 | 13373674 | 13373580 | ID=Msa0105120-mRNA-1:cds;Parent=Msa0105120-mRNA-1 |
| chr1_3 | CDS | 13373159 | 13373270 | 13373159 | ID=Msa0105120-mRNA-1:cds;Parent=Msa0105120-mRNA-1 |
| chr1_3 | CDS | 13372970 | 13373074 | 13372970 | ID=Msa0105120-mRNA-1:cds;Parent=Msa0105120-mRNA-1 |
| chr1_3 | three_prime_UTR | 13372384 | 13372969 | 13372384 | ID=Msa0105120-mRNA-1:three_prime_utr;Parent=Msa0105120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
