AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1027660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1027660 MtrunA17_Chr7g0246791 94.842 349 9 2 1 340 1 349 0.0 670
Msa1027660 MtrunA17_Chr3g0078641 33.495 206 115 5 73 275 23 209 6.54e-22 95.1
Msa1027660 MtrunA17_Chr5g0404851 31.188 202 112 5 78 273 34 214 2.14e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1027660 AT1G01860.1 65.595 311 92 3 38 340 40 343 9.80e-143 407
Msa1027660 AT1G01860.4 64.138 290 89 3 38 319 40 322 3.47e-128 370
Msa1027660 AT1G01860.2 67.424 264 78 1 85 340 1 264 1.03e-124 358
Msa1027660 AT1G01860.3 65.844 243 75 1 85 319 1 243 3.51e-110 322
Msa1027660 AT1G01860.5 66.184 207 63 2 38 244 40 239 2.26e-92 276
Msa1027660 AT2G47420.1 34.112 214 116 6 73 282 25 217 9.50e-23 97.8
Msa1027660 AT5G66360.2 30.846 201 116 5 78 274 65 246 1.22e-19 89.4
Msa1027660 AT5G66360.1 34.000 150 79 3 78 224 65 197 6.22e-15 75.5

Find 94 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGATGTGGTGCTGGAAAT+TGG 0.189630 7_1:-60164067 Msa1027660:CDS
AGATCCTGAGTACAAATTTA+AGG 0.247250 7_1:-60161801 Msa1027660:CDS
GTTGTGAATGTGGGAATCTT+TGG 0.284045 7_1:+60159619 None:intergenic
CAACTAATGTTTCAAGATAA+GGG 0.289444 7_1:-60159509 Msa1027660:three_prime_UTR
TCATCCAAGGTTAGTTCTTC+AGG 0.295643 7_1:+60159729 None:intergenic
TTCCAAACAATGATGATATA+TGG 0.300819 7_1:+60162984 None:intergenic
TTGATGGCAGTGAAATTTAC+AGG 0.302281 7_1:+60159412 None:intergenic
AAATTCTGGTGCATTTGTTC+TGG 0.332103 7_1:-60164011 Msa1027660:CDS
TCAACTAATGTTTCAAGATA+AGG 0.347635 7_1:-60159510 Msa1027660:three_prime_UTR
GACATAAATGAGCAACTTGT+TGG 0.349463 7_1:-60164109 Msa1027660:CDS
TTGGTCAAGGAACCAGTTCC+TGG 0.367941 7_1:+60164043 None:intergenic
ACCAATACTCTAATAAATTC+TGG 0.369289 7_1:-60164025 Msa1027660:CDS
TACCTTCAACTTTCCTGTAC+TGG 0.383159 7_1:+60163594 None:intergenic
GCATGGTAATCGTCTTTGTT+TGG 0.387600 7_1:+60164956 None:intergenic
AAATGCAAACTGCTACTCTT+TGG 0.400726 7_1:+60159680 None:intergenic
AGGAGGAGACTGCTCTGCGC+TGG 0.401092 7_1:-60162232 Msa1027660:CDS
ACCAGAATTTATTAGAGTAT+TGG 0.407064 7_1:+60164024 None:intergenic
TGGTTTGTGGCGGGAGTTGA+AGG 0.414978 7_1:+60165060 None:intergenic
TCCCATATATCATCATTGTT+TGG 0.419065 7_1:-60162986 Msa1027660:CDS
CTGGAAATTGGGCCAGGAAC+TGG 0.421203 7_1:-60164055 Msa1027660:CDS
CGTCATGACTCTCAATACTT+TGG 0.426230 7_1:+60159560 None:intergenic
TTGGCTACAAGTGCCTTTGA+TGG 0.428580 7_1:+60159396 None:intergenic
GAAATTAACAAATATATTGA+TGG 0.429643 7_1:+60162175 None:intergenic
TCCAAACAATGATGATATAT+GGG 0.436718 7_1:+60162985 None:intergenic
ATTTGTTCTGGCGGTTGAAA+AGG 0.442610 7_1:-60163999 Msa1027660:intron
GACCTTCTTCTGCTAAAGTT+CGG 0.445313 7_1:+60159642 None:intergenic
ATATTGATGGGACGATACTC+AGG 0.448686 7_1:+60162188 None:intergenic
CTAAAGCTTCTTCTATCTCA+AGG 0.450868 7_1:+60159922 None:intergenic
TCGCGGCAGTGGTTTGTGGC+GGG 0.451644 7_1:+60165051 None:intergenic
GATTTCGCGGCAGTGGTTTG+TGG 0.461430 7_1:+60165047 None:intergenic
GAGCAACTTGTTGGCGTGGC+TGG 0.461521 7_1:-60164100 Msa1027660:CDS
AGAAGTGGTTCTCTTGCTCC+AGG 0.465553 7_1:-60162374 Msa1027660:intron
GTGATGTGGTGCTGGAAATT+GGG 0.468675 7_1:-60164066 Msa1027660:CDS
TTGTGAATGTGGGAATCTTT+GGG 0.468868 7_1:+60159620 None:intergenic
ATATTTGTTAATTTCTACTC+AGG 0.473995 7_1:-60162167 Msa1027660:intron
GAAATCCTACCGGCGACAAC+CGG 0.474536 7_1:-60165030 Msa1027660:CDS
CGAGGAAGGTGATGTGGTGC+TGG 0.488746 7_1:-60164074 Msa1027660:CDS
CTGAGAAAATGTCACCCATT+GGG 0.495416 7_1:+60162395 None:intergenic
AAGGTTGCGTTGTGAGATAT+TGG 0.496294 7_1:+60165079 None:intergenic
GTAAATTTCACTGCCATCAA+AGG 0.500756 7_1:-60159409 Msa1027660:three_prime_UTR
TTCCAGTACAGGAAAGTTGA+AGG 0.501060 7_1:-60163596 Msa1027660:intron
CCGGTAGGATTTCGCGGCAG+TGG 0.508498 7_1:+60165040 None:intergenic
GCGACCTTAAATTTGTACTC+AGG 0.518265 7_1:+60161797 None:intergenic
ATTAGTTGAAGAAAACTGTC+GGG 0.525218 7_1:+60159524 None:intergenic
TCGAAGCTCTGTTGTTTCCA+CGG 0.529768 7_1:+60164981 None:intergenic
GGAGGAGACTGCTCTGCGCT+GGG 0.531734 7_1:-60162231 Msa1027660:CDS
ATCAAAGGCACTTGTAGCCA+AGG 0.532706 7_1:-60159394 Msa1027660:three_prime_UTR
GATCAAATTACTACTCCCAA+TGG 0.538395 7_1:-60162410 Msa1027660:CDS
TTGCGTTGTGAGATATTGGC+GGG 0.539331 7_1:+60165083 None:intergenic
TTGTCGCCGGTAGGATTTCG+CGG 0.541168 7_1:+60165034 None:intergenic
TGGGACGATACTCAGGGGTC+CGG 0.546774 7_1:+60162195 None:intergenic
ATCAAATTACTACTCCCAAT+GGG 0.548471 7_1:-60162409 Msa1027660:CDS
TAAAGCTTCTTCTATCTCAA+GGG 0.550131 7_1:+60159923 None:intergenic
TCTGAGAAAATGTCACCCAT+TGG 0.554276 7_1:+60162394 None:intergenic
GTGGTGCTGGAAATTGGGCC+AGG 0.554886 7_1:-60164061 Msa1027660:CDS
ATATCACTTACATTAGGCTG+AGG 0.555378 7_1:+60161758 None:intergenic
GATTGATGAGATTGCAATTG+TGG 0.555751 7_1:+60159305 None:intergenic
CCACTGCCGCGAAATCCTAC+CGG 0.556187 7_1:-60165040 Msa1027660:CDS
AACTAATGTTTCAAGATAAG+GGG 0.557795 7_1:-60159508 Msa1027660:three_prime_UTR
AAGGCCTGAAGAACTAACCT+TGG 0.561316 7_1:-60159733 Msa1027660:CDS
GGCGTGGCTGGTGTCGAGGA+AGG 0.563328 7_1:-60164088 Msa1027660:CDS
GAAACTTGGGGATATTCTGA+TGG 0.565564 7_1:+60160794 None:intergenic
TTCGCGGCAGTGGTTTGTGG+CGG 0.566211 7_1:+60165050 None:intergenic
ACATCTGTACTGATATAGAA+AGG 0.568986 7_1:+60162433 None:intergenic
AAATTAACAAATATATTGAT+GGG 0.571638 7_1:+60162176 None:intergenic
GACCGAACTTTAGCAGAAGA+AGG 0.577400 7_1:-60159644 Msa1027660:three_prime_UTR
CATTAGTTGAAGAAAACTGT+CGG 0.577971 7_1:+60159523 None:intergenic
CGACTCCGGTTGTCGCCGGT+AGG 0.585962 7_1:+60165025 None:intergenic
GAAGAAGCTTTAGAAAGCAT+AGG 0.591998 7_1:-60159912 Msa1027660:CDS
AGTACAAATGAATACAGTGC+GGG 0.593610 7_1:+60159445 None:intergenic
TTCTGGTGCATTTGTTCTGG+CGG 0.595156 7_1:-60164008 Msa1027660:CDS
GTTGCGTTGTGAGATATTGG+CGG 0.595275 7_1:+60165082 None:intergenic
CATTGCATAGGATAAACACA+TGG 0.598047 7_1:-60163641 Msa1027660:intron
CTCAAAGCTCTCAACTCCAA+AGG 0.598248 7_1:-60164929 Msa1027660:CDS
TGTTGGCGTGGCTGGTGTCG+AGG 0.598664 7_1:-60164092 Msa1027660:CDS
CTTCAGTTTGAATGAGACAA+CGG 0.599538 7_1:+60160820 None:intergenic
ATTTATTAGAGTATTGGTCA+AGG 0.601001 7_1:+60164030 None:intergenic
TATTGATGGGACGATACTCA+GGG 0.612770 7_1:+60162189 None:intergenic
TGGAAAATCTTTCACTCACG+AGG 0.612945 7_1:+60163614 None:intergenic
TGAGATTGCAATTGTGGTCG+CGG 0.613320 7_1:+60159311 None:intergenic
CGAAAATTCTACGTAGCTTG+CGG 0.614489 7_1:-60165004 Msa1027660:CDS
GCTGGGTAGAACCATCGCTC+CGG 0.622517 7_1:-60162214 Msa1027660:CDS
AACAGTCACAATCATGATTG+CGG 0.625179 7_1:+60159358 None:intergenic
TGAGAGCTTTGAGAGTGGCA+TGG 0.631919 7_1:+60164939 None:intergenic
ATCATTGTTTGGAAGCACAA+AGG 0.633022 7_1:-60162975 Msa1027660:CDS
TATCACTTACATTAGGCTGA+GGG 0.637069 7_1:+60161759 None:intergenic
GGAGTTGAGAGCTTTGAGAG+TGG 0.641571 7_1:+60164934 None:intergenic
TGGTGTCGAGGAAGGTGATG+TGG 0.664056 7_1:-60164080 Msa1027660:CDS
GGAAAATCTTTCACTCACGA+GGG 0.671870 7_1:+60163615 None:intergenic
AAATGAGCAACTTGTTGGCG+TGG 0.677634 7_1:-60164104 Msa1027660:CDS
GGAGTGTTTGAAGATAACAT+AGG 0.691852 7_1:+60165104 None:intergenic
GTACAAATGAATACAGTGCG+GGG 0.707113 7_1:+60159446 None:intergenic
AAGTACAAATGAATACAGTG+CGG 0.730683 7_1:+60159444 None:intergenic
ATTGATGGGACGATACTCAG+GGG 0.777275 7_1:+60162190 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTATTTGCTTTT+TGG - chr7_1:60159587-60159606 Msa1027660:three_prime_UTR 10.0%
!! AAATTAACAAATATATTGAT+GGG + chr7_1:60162245-60162264 None:intergenic 10.0%
!!! AAATCACTTTAAAAAAAAAT+TGG - chr7_1:60162467-60162486 Msa1027660:intron 10.0%
!!! TTTTTCAAGATTTTTTTTAT+AGG - chr7_1:60163249-60163268 Msa1027660:intron 10.0%
!! TAGTTAAATAGTTAAATAAA+TGG + chr7_1:60163436-60163455 None:intergenic 10.0%
!! TAACTATTTAACTATAAAAA+AGG - chr7_1:60163442-60163461 Msa1027660:intron 10.0%
!!! CTATTTCTGTTAAATATTAT+TGG - chr7_1:60160696-60160715 Msa1027660:intron 15.0%
!! TAGAAATTTCAAAAATCATT+AGG + chr7_1:60160855-60160874 None:intergenic 15.0%
!! TGCTAAAATAATGATAATTT+AGG - chr7_1:60161316-60161335 Msa1027660:intron 15.0%
!! ATAATCTAGCAAAATTAATT+TGG + chr7_1:60161898-60161917 None:intergenic 15.0%
!! GAAATTAACAAATATATTGA+TGG + chr7_1:60162246-60162265 None:intergenic 15.0%
!!! AGTTTGTTTTAGATTTATTA+TGG + chr7_1:60162979-60162998 None:intergenic 15.0%
!! TAGAAAAAAAAGAAAAGAAA+GGG + chr7_1:60164107-60164126 None:intergenic 15.0%
!!! CTTTTTTTTCTACAAAAATT+TGG - chr7_1:60164115-60164134 Msa1027660:CDS 15.0%
!! AAAAAATATGTAGAGTAAAT+AGG - chr7_1:60164209-60164228 Msa1027660:intron 15.0%
!! AAAAATATGTAGAGTAAATA+GGG - chr7_1:60164210-60164229 Msa1027660:intron 15.0%
!! GAAGAAAAAAAATCAGATTT+AGG + chr7_1:60159999-60160018 None:intergenic 20.0%
!! TCCAAACAATAAAACATAAA+GGG + chr7_1:60160025-60160044 None:intergenic 20.0%
!! TTCCAAACAATAAAACATAA+AGG + chr7_1:60160026-60160045 None:intergenic 20.0%
!! TTGTTTGGAAGTTATTTATA+TGG - chr7_1:60160036-60160055 Msa1027660:intron 20.0%
!! AAAATGCATTTGCTTAAATT+TGG - chr7_1:60160250-60160269 Msa1027660:intron 20.0%
!! AAATGCATTTGCTTAAATTT+GGG - chr7_1:60160251-60160270 Msa1027660:intron 20.0%
!!! TGACTTATTTGTATCATTTT+TGG - chr7_1:60160668-60160687 Msa1027660:intron 20.0%
!!! GATTTTTTTTCCTGATAATA+TGG + chr7_1:60160948-60160967 None:intergenic 20.0%
!!! AAATAATGATAATTTAGGAC+CGG - chr7_1:60161321-60161340 Msa1027660:intron 20.0%
!! CATTAATTATACAAGAAAAC+CGG + chr7_1:60161343-60161362 None:intergenic 20.0%
!!! TATTGTTGTTTAGTAGTTTA+GGG + chr7_1:60161512-60161531 None:intergenic 20.0%
!! TTTGGCAAATGAAAAAATAA+TGG + chr7_1:60161537-60161556 None:intergenic 20.0%
!! ATTATGAACACAATCATTTA+TGG + chr7_1:60162084-60162103 None:intergenic 20.0%
!! TCATAATATTCAGATTCTAT+TGG - chr7_1:60162097-60162116 Msa1027660:intron 20.0%
!! TAAACAGATTAAATTATTGC+AGG - chr7_1:60162166-60162185 Msa1027660:intron 20.0%
!!! ATATTTGTTAATTTCTACTC+AGG - chr7_1:60162251-60162270 Msa1027660:intron 20.0%
!! AATACTATATCACTTACATT+AGG + chr7_1:60162669-60162688 None:intergenic 20.0%
!!! TTGTTTTAGATTTATTATGG+TGG + chr7_1:60162976-60162995 None:intergenic 20.0%
!! TTAACTATAAAAAAGGAAGA+AGG - chr7_1:60163449-60163468 Msa1027660:intron 20.0%
!!! AAACCGTATTTTTTCTAAAA+GGG + chr7_1:60163831-60163850 None:intergenic 20.0%
!!! AAAACCGTATTTTTTCTAAA+AGG + chr7_1:60163832-60163851 None:intergenic 20.0%
!! TGTGATTTCAATTATTAGAA+GGG + chr7_1:60163914-60163933 None:intergenic 20.0%
!! TTGTGATTTCAATTATTAGA+AGG + chr7_1:60163915-60163934 None:intergenic 20.0%
!! GGTACAATGATAAATTAATT+TGG + chr7_1:60163994-60164013 None:intergenic 20.0%
!! GTAGAAAAAAAAGAAAAGAA+AGG + chr7_1:60164108-60164127 None:intergenic 20.0%
!! AAAATATGTAGAGTAAATAG+GGG - chr7_1:60164211-60164230 Msa1027660:intron 20.0%
!!! GACAAGAATTTTTTCTAAAA+GGG - chr7_1:60164293-60164312 Msa1027660:intron 20.0%
!!! TTGCTTTTTGGTGTATTTTT+TGG - chr7_1:60159599-60159618 Msa1027660:three_prime_UTR 25.0%
!!! CTTATTTTCATAAGTTCTCT+AGG - chr7_1:60159795-60159814 Msa1027660:intron 25.0%
!!! CTTTTAACTTATATGAGAAC+TGG - chr7_1:60159842-60159861 Msa1027660:intron 25.0%
! GAAATAGCTTATACGTAAAA+AGG - chr7_1:60159898-60159917 Msa1027660:intron 25.0%
! ATACGTAAAAAGGACTTATA+TGG - chr7_1:60159908-60159927 Msa1027660:CDS 25.0%
! CCAAACAATAAAACATAAAG+GGG + chr7_1:60160024-60160043 None:intergenic 25.0%
! GAAGTTATTTATATGGACTT+TGG - chr7_1:60160043-60160062 Msa1027660:intron 25.0%
! TAAAACGAAAAAGTCAAAAC+CGG + chr7_1:60160170-60160189 None:intergenic 25.0%
!!! GACTTTTTCGTTTTATTGTT+TGG - chr7_1:60160175-60160194 Msa1027660:intron 25.0%
!!! ATTTATTAGAGTATTGGTCA+AGG + chr7_1:60160391-60160410 None:intergenic 25.0%
! ACCAATACTCTAATAAATTC+TGG - chr7_1:60160393-60160412 Msa1027660:intron 25.0%
! ACCAGAATTTATTAGAGTAT+TGG + chr7_1:60160397-60160416 None:intergenic 25.0%
!!! ATTTTTTTTGTCTGTCTACA+TGG - chr7_1:60160608-60160627 Msa1027660:intron 25.0%
! TTTCCAAATTTGTGATAAGT+TGG - chr7_1:60160741-60160760 Msa1027660:intron 25.0%
!! GTTATGATTTTTCATTGCAT+AGG - chr7_1:60160765-60160784 Msa1027660:intron 25.0%
! AATTCACTTTCCATATTATC+AGG - chr7_1:60160935-60160954 Msa1027660:intron 25.0%
! GTCAAAAAGAGATATATTCT+TGG + chr7_1:60161038-60161057 None:intergenic 25.0%
! TTAACAATGAATGCAAGATA+GGG + chr7_1:60161091-60161110 None:intergenic 25.0%
! AATGCAATAAGAAGAATTTG+AGG + chr7_1:60161182-60161201 None:intergenic 25.0%
!! ATTGCATTCAAAAGATCTTT+TGG - chr7_1:60161194-60161213 Msa1027660:intron 25.0%
! TCCAAACAATGATGATATAT+GGG + chr7_1:60161436-60161455 None:intergenic 25.0%
! TTCCAAACAATGATGATATA+TGG + chr7_1:60161437-60161456 None:intergenic 25.0%
!!! GTATTGTTGTTTAGTAGTTT+AGG + chr7_1:60161513-60161532 None:intergenic 25.0%
!! AAAATATTGCCACTTAGTTT+AGG + chr7_1:60161847-60161866 None:intergenic 25.0%
!!! ATATTTTAACCATGACGTTT+TGG - chr7_1:60161860-60161879 Msa1027660:intron 25.0%
! ACAACAAGTTACATATAATC+TGG + chr7_1:60161922-60161941 None:intergenic 25.0%
! ATACTTGATTGTAAAAGGAT+AGG + chr7_1:60162322-60162341 None:intergenic 25.0%
! TTGTGATACTTGATTGTAAA+AGG + chr7_1:60162327-60162346 None:intergenic 25.0%
!! AAGTATCACAAGTTTTCATA+TGG - chr7_1:60162336-60162355 Msa1027660:intron 25.0%
!! AATCTTTTCAATAACTTGAC+TGG + chr7_1:60162385-60162404 None:intergenic 25.0%
! AGCATAAAATACACCAAATT+TGG + chr7_1:60162576-60162595 None:intergenic 25.0%
! TTTCAAAAGCTAAAACAAAC+AGG + chr7_1:60163008-60163027 None:intergenic 25.0%
!!! TTACAGTTTGTTTTAGATTC+TGG + chr7_1:60163121-60163140 None:intergenic 25.0%
! ATATAACACAAACAGAAAGT+AGG - chr7_1:60163206-60163225 Msa1027660:intron 25.0%
! TTGAAAAATAGTTGCTTCAT+GGG + chr7_1:60163237-60163256 None:intergenic 25.0%
! TTTACTTTCATTACCAGTAA+CGG + chr7_1:60163408-60163427 None:intergenic 25.0%
!! TTACATATCAGTAGATTTTG+TGG - chr7_1:60163522-60163541 Msa1027660:intron 25.0%
!! TACATATCAGTAGATTTTGT+GGG - chr7_1:60163523-60163542 Msa1027660:intron 25.0%
!! ATTCATTTTCATGTTTGTCT+AGG - chr7_1:60163566-60163585 Msa1027660:intron 25.0%
!! GAATAAAAGCTTCTTTTCAA+TGG - chr7_1:60163650-60163669 Msa1027660:intron 25.0%
!! CTAAAAGGGTCTTATAATAA+GGG + chr7_1:60163817-60163836 None:intergenic 25.0%
!! TCTAAAAGGGTCTTATAATA+AGG + chr7_1:60163818-60163837 None:intergenic 25.0%
!!! AGACCCTTTTAGAAAAAATA+CGG - chr7_1:60163825-60163844 Msa1027660:intron 25.0%
!!! TAGTAGTGGGTAATTAATAT+AGG + chr7_1:60163949-60163968 None:intergenic 25.0%
!! TCACGTTAATTTTCAGTAAT+GGG + chr7_1:60164015-60164034 None:intergenic 25.0%
!! TTCACGTTAATTTTCAGTAA+TGG + chr7_1:60164016-60164035 None:intergenic 25.0%
! TAGTCTACATTCAATATACA+AGG + chr7_1:60164043-60164062 None:intergenic 25.0%
! TATATTGAATGTAGACTAGT+TGG - chr7_1:60164045-60164064 Msa1027660:CDS 25.0%
! AAAAAAGAAAAGAAAGGGAA+AGG + chr7_1:60164102-60164121 None:intergenic 25.0%
!!! GGACAAGAATTTTTTCTAAA+AGG - chr7_1:60164292-60164311 Msa1027660:intron 25.0%
! ATTCAGTTCTATATACTTGT+AGG - chr7_1:60164409-60164428 Msa1027660:intron 25.0%
!! TTCTAAGTACTGTAAGTTAT+CGG - chr7_1:60164531-60164550 Msa1027660:intron 25.0%
!! TAAGGGCATAAAATGAAAAT+AGG + chr7_1:60164586-60164605 None:intergenic 25.0%
! AAATGAAATTCAGTGAGTAA+GGG + chr7_1:60164603-60164622 None:intergenic 25.0%
! TCAACTAATGTTTCAAGATA+AGG - chr7_1:60164908-60164927 Msa1027660:CDS 25.0%
! CAACTAATGTTTCAAGATAA+GGG - chr7_1:60164909-60164928 Msa1027660:CDS 25.0%
! AACTAATGTTTCAAGATAAG+GGG - chr7_1:60164910-60164929 Msa1027660:CDS 25.0%
! TTGAAGTGTTACAACACAAT+GGG + chr7_1:60159562-60159581 None:intergenic 30.0%
! TTTGAAGTGTTACAACACAA+TGG + chr7_1:60159563-60159582 None:intergenic 30.0%
!! CCCCTTTATGTTTTATTGTT+TGG - chr7_1:60160021-60160040 Msa1027660:intron 30.0%
! AAAAAGTCAAAACCGGATTT+TGG + chr7_1:60160163-60160182 None:intergenic 30.0%
ACTCCAACTTATCACAAATT+TGG + chr7_1:60160747-60160766 None:intergenic 30.0%
CTTATCAACAAAAACACTAC+AGG + chr7_1:60160885-60160904 None:intergenic 30.0%
TGGTTCAAACTATCAATAAC+TGG + chr7_1:60161018-60161037 None:intergenic 30.0%
CTTAACAATGAATGCAAGAT+AGG + chr7_1:60161092-60161111 None:intergenic 30.0%
! CTCCATAGCTCTTTAAATTT+TGG - chr7_1:60161232-60161251 Msa1027660:intron 30.0%
AGCCAAAATTTAAAGAGCTA+TGG + chr7_1:60161237-60161256 None:intergenic 30.0%
!!! ATTTTGGCTCATTATATTGC+TGG - chr7_1:60161248-60161267 Msa1027660:intron 30.0%
TCCCATATATCATCATTGTT+TGG - chr7_1:60161432-60161451 Msa1027660:intron 30.0%
!! TGCCAAATTTTAGAAAGTGT+TGG - chr7_1:60161550-60161569 Msa1027660:intron 30.0%
!! AGCCAACACTTTCTAAAATT+TGG + chr7_1:60161555-60161574 None:intergenic 30.0%
! TATTTTGTAAGAGTGACAAG+TGG + chr7_1:60161617-60161636 None:intergenic 30.0%
CTTGTCACTCTTACAAAATA+TGG - chr7_1:60161617-60161636 Msa1027660:intron 30.0%
! GCTGTCAAATGACTTTATTT+AGG + chr7_1:60161810-60161829 None:intergenic 30.0%
! TAGCAAAATTAATTTGGCAG+AGG + chr7_1:60161892-60161911 None:intergenic 30.0%
! ACATCTGTACTGATATAGAA+AGG + chr7_1:60161988-60162007 None:intergenic 30.0%
ATCAAATTACTACTCCCAAT+GGG - chr7_1:60162009-60162028 Msa1027660:intron 30.0%
TAAGACCATGGACATTAAAA+AGG + chr7_1:60162126-60162145 None:intergenic 30.0%
CTGTTATTACATTAAGACCA+TGG + chr7_1:60162138-60162157 None:intergenic 30.0%
ACAGATTAAATTATTGCAGG+AGG - chr7_1:60162169-60162188 Msa1027660:CDS 30.0%
AGATCCTGAGTACAAATTTA+AGG - chr7_1:60162617-60162636 Msa1027660:intron 30.0%
ATTATCCTAAAAGAATCGCA+GGG + chr7_1:60162791-60162810 None:intergenic 30.0%
GATAATCCAATATATGCAAG+AGG - chr7_1:60162805-60162824 Msa1027660:intron 30.0%
!!! TACATGCACTTTTTTACTGA+GGG + chr7_1:60163067-60163086 None:intergenic 30.0%
! AGTAAAAAAGTGCATGTACT+GGG - chr7_1:60163069-60163088 Msa1027660:intron 30.0%
ATTCTGGTGAAAACAAAATG+GGG + chr7_1:60163105-60163124 None:intergenic 30.0%
GATTCTGGTGAAAACAAAAT+GGG + chr7_1:60163106-60163125 None:intergenic 30.0%
AGATTCTGGTGAAAACAAAA+TGG + chr7_1:60163107-60163126 None:intergenic 30.0%
AAACAAACTGTAAAGTGAAG+TGG - chr7_1:60163128-60163147 Msa1027660:intron 30.0%
TGTGTTATATCTCACATATG+CGG + chr7_1:60163196-60163215 None:intergenic 30.0%
CTTGAAAAATAGTTGCTTCA+TGG + chr7_1:60163238-60163257 None:intergenic 30.0%
TATAGGCAAATGTTAGTTGT+TGG - chr7_1:60163266-60163285 Msa1027660:intron 30.0%
AATGCAGGAGATATAGTTAT+TGG - chr7_1:60163492-60163511 Msa1027660:intron 30.0%
CAGTAATTAATGCACACAAT+CGG + chr7_1:60163768-60163787 None:intergenic 30.0%
AATTATTAGAAGGGCAAACA+TGG + chr7_1:60163905-60163924 None:intergenic 30.0%
CAAGTTATTCAAGTAGTAGT+GGG + chr7_1:60163962-60163981 None:intergenic 30.0%
TCAAGTTATTCAAGTAGTAG+TGG + chr7_1:60163963-60163982 None:intergenic 30.0%
AGAACAGCAATAAGTTTAGT+GGG + chr7_1:60164155-60164174 None:intergenic 30.0%
AAGAACAGCAATAAGTTTAG+TGG + chr7_1:60164156-60164175 None:intergenic 30.0%
! TATCTTTGTTTAGAGTAGCT+TGG + chr7_1:60164362-60164381 None:intergenic 30.0%
TAAAGCTTCTTCTATCTCAA+GGG + chr7_1:60164498-60164517 None:intergenic 30.0%
CAAATGAAATTCAGTGAGTA+AGG + chr7_1:60164604-60164623 None:intergenic 30.0%
! CAGTTTTACAAAATCATCCA+AGG + chr7_1:60164705-60164724 None:intergenic 30.0%
CAACAAAAAGTTGTGAATGT+GGG + chr7_1:60164811-60164830 None:intergenic 30.0%
ATTAGTTGAAGAAAACTGTC+GGG + chr7_1:60164897-60164916 None:intergenic 30.0%
CATTAGTTGAAGAAAACTGT+CGG + chr7_1:60164898-60164917 None:intergenic 30.0%
AAGTACAAATGAATACAGTG+CGG + chr7_1:60164977-60164996 None:intergenic 30.0%
! GGAGTGTTTGAAGATAACAT+AGG + chr7_1:60159317-60159336 None:intergenic 35.0%
!!! ACCTGACCAAGAGATTTTTT+GGG + chr7_1:60159522-60159541 None:intergenic 35.0%
!!! TATTTTTTGGTTGCTCTGTG+AGG - chr7_1:60159612-60159631 Msa1027660:three_prime_UTR 35.0%
! GTTTTGTACTTAGGACTGTT+TGG - chr7_1:60159666-60159685 Msa1027660:three_prime_UTR 35.0%
! TCTGTTGCGACATGAATTTT+GGG - chr7_1:60160127-60160146 Msa1027660:intron 35.0%
! TTGTTTGGAGATGATTTTGC+TGG - chr7_1:60160190-60160209 Msa1027660:intron 35.0%
ATTGCTTCAGGACTTCATTT+GGG - chr7_1:60160215-60160234 Msa1027660:intron 35.0%
GACATAAATGAGCAACTTGT+TGG - chr7_1:60160309-60160328 Msa1027660:intron 35.0%
AAATTCTGGTGCATTTGTTC+TGG - chr7_1:60160407-60160426 Msa1027660:intron 35.0%
!!! CATGTTTGCAAGTGCTTTTT+TGG - chr7_1:60160564-60160583 Msa1027660:intron 35.0%
GTTGTACATGTTTGCATCTT+TGG - chr7_1:60160640-60160659 Msa1027660:intron 35.0%
AATATTATTGGTCGCAGTGT+AGG - chr7_1:60160708-60160727 Msa1027660:intron 35.0%
CATTGCATAGGATAAACACA+TGG - chr7_1:60160777-60160796 Msa1027660:CDS 35.0%
! AGTGAAAGATTTTCCAGTAC+AGG - chr7_1:60160811-60160830 Msa1027660:CDS 35.0%
ATTGTTAAGAGTCAGAAGTC+AGG - chr7_1:60161103-60161122 Msa1027660:intron 35.0%
AGAGCTATGGAGAAATTACA+AGG + chr7_1:60161224-60161243 None:intergenic 35.0%
! CCTGCAAGCATTTTATCAAA+AGG + chr7_1:60161377-60161396 None:intergenic 35.0%
! CCTTTTGATAAAATGCTTGC+AGG - chr7_1:60161374-60161393 Msa1027660:intron 35.0%
! ATCATTGTTTGGAAGCACAA+AGG - chr7_1:60161443-60161462 Msa1027660:intron 35.0%
!! AAGTGTTGGCTACTTGATAA+AGG - chr7_1:60161564-60161583 Msa1027660:intron 35.0%
GGAACTATGGTGAATGTAAT+GGG - chr7_1:60161672-60161691 Msa1027660:intron 35.0%
!! ATGGTGAATGTAATGGGTAT+TGG - chr7_1:60161678-60161697 Msa1027660:intron 35.0%
!! TGGTGAATGTAATGGGTATT+GGG - chr7_1:60161679-60161698 Msa1027660:intron 35.0%
! TTTGGTGGGCATAAATGAAT+CGG - chr7_1:60161732-60161751 Msa1027660:intron 35.0%
TAGGTTTATGCTGTTGAGTA+TGG + chr7_1:60161791-60161810 None:intergenic 35.0%
TTCAAGTGTCCTAAACTAAG+TGG - chr7_1:60161835-60161854 Msa1027660:intron 35.0%
!! ACTTGTTGTCAATCCTGAAA+TGG - chr7_1:60161933-60161952 Msa1027660:intron 35.0%
TGCAAACAACATACCATTTC+AGG + chr7_1:60161949-60161968 None:intergenic 35.0%
! TGAAATGGTATGTTGTTTGC+AGG - chr7_1:60161948-60161967 Msa1027660:intron 35.0%
GATCAAATTACTACTCCCAA+TGG - chr7_1:60162008-60162027 Msa1027660:intron 35.0%
ATGGTGAATCAATTCTAACC+TGG + chr7_1:60162065-60162084 None:intergenic 35.0%
GACTATATAATCCTTTCCTG+TGG - chr7_1:60162489-60162508 Msa1027660:intron 35.0%
ATAACTTACTAAGAAGCCAC+AGG + chr7_1:60162508-60162527 None:intergenic 35.0%
GATATTCGTTACGCCAAATT+TGG - chr7_1:60162560-60162579 Msa1027660:intron 35.0%
TATCACTTACATTAGGCTGA+GGG + chr7_1:60162662-60162681 None:intergenic 35.0%
ATATCACTTACATTAGGCTG+AGG + chr7_1:60162663-60162682 None:intergenic 35.0%
GATATGCGCTTGAATGATAT+TGG - chr7_1:60162689-60162708 Msa1027660:intron 35.0%
GATTATCCTAAAAGAATCGC+AGG + chr7_1:60162792-60162811 None:intergenic 35.0%
TCTATGCCTCTTGCATATAT+TGG + chr7_1:60162814-60162833 None:intergenic 35.0%
TCTTGAAACGAAGTTTCAGA+TGG + chr7_1:60162911-60162930 None:intergenic 35.0%
TCAAGAAAGCGAAAAACTTG+TGG - chr7_1:60162925-60162944 Msa1027660:intron 35.0%
!!! GTACATGCACTTTTTTACTG+AGG + chr7_1:60163068-60163087 None:intergenic 35.0%
! CAGTAAAAAAGTGCATGTAC+TGG - chr7_1:60163068-60163087 Msa1027660:intron 35.0%
AAAAAAGTGAAAGCCGTTAC+TGG - chr7_1:60163392-60163411 Msa1027660:intron 35.0%
! CTATATCTCCTGCATTTTTC+AGG + chr7_1:60163488-60163507 None:intergenic 35.0%
CTTCAGTTTGAATGAGACAA+CGG + chr7_1:60163601-60163620 None:intergenic 35.0%
! CTTTTATTCGACGAAACTTG+GGG + chr7_1:60163639-60163658 None:intergenic 35.0%
! GCTTTTATTCGACGAAACTT+GGG + chr7_1:60163640-60163659 None:intergenic 35.0%
! AGCTTTTATTCGACGAAACT+TGG + chr7_1:60163641-60163660 None:intergenic 35.0%
CTATGCATGACAATGTATGA+CGG + chr7_1:60163690-60163709 None:intergenic 35.0%
CGATTGTGTGCATTAATTAC+TGG - chr7_1:60163766-60163785 Msa1027660:intron 35.0%
! AAGGGTCTTATAATAAGGGA+CGG + chr7_1:60164275-60164294 None:intergenic 35.0%
TCTAAAAGGGTCCTATAACA+AGG - chr7_1:60164306-60164325 Msa1027660:intron 35.0%
CTAAAAGGGTCCTATAACAA+GGG - chr7_1:60164307-60164326 Msa1027660:intron 35.0%
CTAAAGCTTCTTCTATCTCA+AGG + chr7_1:60164499-60164518 None:intergenic 35.0%
!! GAAGAAGCTTTAGAAAGCAT+AGG - chr7_1:60164506-60164525 Msa1027660:intron 35.0%
AAATGCAAACTGCTACTCTT+TGG + chr7_1:60164741-60164760 None:intergenic 35.0%
TTGTGAATGTGGGAATCTTT+GGG + chr7_1:60164801-60164820 None:intergenic 35.0%
GCAACAAAAAGTTGTGAATG+TGG + chr7_1:60164812-60164831 None:intergenic 35.0%
AGTACAAATGAATACAGTGC+GGG + chr7_1:60164976-60164995 None:intergenic 35.0%
! TTGATGGCAGTGAAATTTAC+AGG + chr7_1:60165009-60165028 None:intergenic 35.0%
GTAAATTTCACTGCCATCAA+AGG - chr7_1:60165009-60165028 Msa1027660:CDS 35.0%
!! GCGGATTGTTTTATAAACCT+TGG + chr7_1:60165044-60165063 None:intergenic 35.0%
AACAGTCACAATCATGATTG+CGG + chr7_1:60165063-60165082 None:intergenic 35.0%
GATTGATGAGATTGCAATTG+TGG + chr7_1:60165116-60165135 None:intergenic 35.0%
AAGGTTGCGTTGTGAGATAT+TGG + chr7_1:60159342-60159361 None:intergenic 40.0%
! CTACGTAGAATTTTCGACTC+CGG + chr7_1:60159410-60159429 None:intergenic 40.0%
CGAAAATTCTACGTAGCTTG+CGG - chr7_1:60159414-60159433 Msa1027660:three_prime_UTR 40.0%
GCATGGTAATCGTCTTTGTT+TGG + chr7_1:60159465-60159484 None:intergenic 40.0%
AGATCCCCCAAAAAATCTCT+TGG - chr7_1:60159513-60159532 Msa1027660:three_prime_UTR 40.0%
!!! CTGACCAAGAGATTTTTTGG+GGG + chr7_1:60159520-60159539 None:intergenic 40.0%
!!! CCTGACCAAGAGATTTTTTG+GGG + chr7_1:60159521-60159540 None:intergenic 40.0%
!!! CACCTGACCAAGAGATTTTT+TGG + chr7_1:60159523-60159542 None:intergenic 40.0%
! CGTTTTATCGAACATGTGGT+GGG - chr7_1:60159635-60159654 Msa1027660:three_prime_UTR 40.0%
!!! GCGTGTGTTGTTTTGTACTT+AGG - chr7_1:60159657-60159676 Msa1027660:three_prime_UTR 40.0%
TTTGGTTGCATACTTCGTTG+AGG - chr7_1:60160061-60160080 Msa1027660:intron 40.0%
! CTCTGTTGCGACATGAATTT+TGG - chr7_1:60160126-60160145 Msa1027660:intron 40.0%
! CTGTTGCGACATGAATTTTG+GGG - chr7_1:60160128-60160147 Msa1027660:intron 40.0%
GGGTTTAGCATTCCAAAATC+CGG - chr7_1:60160148-60160167 Msa1027660:intron 40.0%
! ATTTTGCTGGACATTGCTTC+AGG - chr7_1:60160203-60160222 Msa1027660:intron 40.0%
CATTGCTTCAGGACTTCATT+TGG - chr7_1:60160214-60160233 Msa1027660:intron 40.0%
TTGCTTCAGGACTTCATTTG+GGG - chr7_1:60160216-60160235 Msa1027660:intron 40.0%
ATTTGTTCTGGCGGTTGAAA+AGG - chr7_1:60160419-60160438 Msa1027660:intron 40.0%
! ACGAGTCATTGAAAGCATGA+GGG + chr7_1:60160499-60160518 None:intergenic 40.0%
! AACGAGTCATTGAAAGCATG+AGG + chr7_1:60160500-60160519 None:intergenic 40.0%
GCTTTCAATGACTCGTTCTT+TGG - chr7_1:60160503-60160522 Msa1027660:intron 40.0%
GGAAAATCTTTCACTCACGA+GGG + chr7_1:60160806-60160825 None:intergenic 40.0%
TGGAAAATCTTTCACTCACG+AGG + chr7_1:60160807-60160826 None:intergenic 40.0%
TTCCAGTACAGGAAAGTTGA+AGG - chr7_1:60160822-60160841 Msa1027660:CDS 40.0%
TACCTTCAACTTTCCTGTAC+TGG + chr7_1:60160827-60160846 None:intergenic 40.0%
TTGACATGCACTGTATGCTT+AGG - chr7_1:60161053-60161072 Msa1027660:intron 40.0%
AACTGCATTTACTACTGTGC+AGG - chr7_1:60161126-60161145 Msa1027660:intron 40.0%
TGGCTCATTATATTGCTGGA+TGG - chr7_1:60161252-60161271 Msa1027660:intron 40.0%
!!! ATGCTTGCAGGTTTTGAATG+AGG - chr7_1:60161386-60161405 Msa1027660:intron 40.0%
! TGTTGGCTACTTGATAAAGG+AGG - chr7_1:60161567-60161586 Msa1027660:intron 40.0%
ACAAGTGGAGCTGAATGTTA+GGG + chr7_1:60161602-60161621 None:intergenic 40.0%
CTATACACGCAAAGTGGAAA+CGG + chr7_1:60161647-60161666 None:intergenic 40.0%
GGGAACTATGGTGAATGTAA+TGG - chr7_1:60161671-60161690 Msa1027660:intron 40.0%
! TCAACTGCTGTTGGTTAGTT+TGG - chr7_1:60161702-60161721 Msa1027660:intron 40.0%
!! GGTTAGTTTGGACCTTTGTT+TGG - chr7_1:60161714-60161733 Msa1027660:intron 40.0%
! TAGTTTGGACCTTTGTTTGG+TGG - chr7_1:60161717-60161736 Msa1027660:intron 40.0%
! AGTTTGGACCTTTGTTTGGT+GGG - chr7_1:60161718-60161737 Msa1027660:intron 40.0%
CATTTATGCCCACCAAACAA+AGG + chr7_1:60161729-60161748 None:intergenic 40.0%
!! ACTGGCTTGTGGGTTATTAT+TGG + chr7_1:60161766-60161785 None:intergenic 40.0%
! AATGGTATGTTGTTTGCAGG+TGG - chr7_1:60161951-60161970 Msa1027660:intron 40.0%
CTGAGAAAATGTCACCCATT+GGG + chr7_1:60162026-60162045 None:intergenic 40.0%
TCTGAGAAAATGTCACCCAT+TGG + chr7_1:60162027-60162046 None:intergenic 40.0%
GACCATGGACATTAAAAAGG+AGG + chr7_1:60162123-60162142 None:intergenic 40.0%
TATTGATGGGACGATACTCA+GGG + chr7_1:60162232-60162251 None:intergenic 40.0%
ATATTGATGGGACGATACTC+AGG + chr7_1:60162233-60162252 None:intergenic 40.0%
TAACTGTGCGTAATCTGTGA+TGG - chr7_1:60162413-60162432 Msa1027660:CDS 40.0%
GTGATGGCAATCATGATTCA+AGG - chr7_1:60162429-60162448 Msa1027660:CDS 40.0%
TTACTAAGAAGCCACAGGAA+AGG + chr7_1:60162503-60162522 None:intergenic 40.0%
AGGATCTGTAAAAGAGAGTC+AGG + chr7_1:60162604-60162623 None:intergenic 40.0%
GCGACCTTAAATTTGTACTC+AGG + chr7_1:60162624-60162643 None:intergenic 40.0%
AGCGAAAAACTTGTGGCTTT+CGG - chr7_1:60162932-60162951 Msa1027660:intron 40.0%
GGCTCATGAAAAACTTGCAT+TGG - chr7_1:60163149-60163168 Msa1027660:intron 40.0%
TATATCTCACATATGCGGCA+CGG + chr7_1:60163191-60163210 None:intergenic 40.0%
GTGTGTTATGTCAGTAGACA+TGG - chr7_1:60163288-60163307 Msa1027660:intron 40.0%
AGTAGACATGGTTTGAACTC+TGG - chr7_1:60163300-60163319 Msa1027660:intron 40.0%
GAAACTTGGGGATATTCTGA+TGG + chr7_1:60163627-60163646 None:intergenic 40.0%
! GACAATGTATGACGGAGAAA+GGG + chr7_1:60163682-60163701 None:intergenic 40.0%
! TGACAATGTATGACGGAGAA+AGG + chr7_1:60163683-60163702 None:intergenic 40.0%
TGTCATGCATAGAGTTTCTG+AGG - chr7_1:60163698-60163717 Msa1027660:intron 40.0%
TCTTCTGATGTTTGCAGTCA+AGG - chr7_1:60164666-60164685 Msa1027660:intron 40.0%
! TCATCCAAGGTTAGTTCTTC+AGG + chr7_1:60164692-60164711 None:intergenic 40.0%
GACCTTCTTCTGCTAAAGTT+CGG + chr7_1:60164779-60164798 None:intergenic 40.0%
GTTGTGAATGTGGGAATCTT+TGG + chr7_1:60164802-60164821 None:intergenic 40.0%
CGTCATGACTCTCAATACTT+TGG + chr7_1:60164861-60164880 None:intergenic 40.0%
GTACAAATGAATACAGTGCG+GGG + chr7_1:60164975-60164994 None:intergenic 40.0%
TTGCGTTGTGAGATATTGGC+GGG + chr7_1:60159338-60159357 None:intergenic 45.0%
GTTGCGTTGTGAGATATTGG+CGG + chr7_1:60159339-60159358 None:intergenic 45.0%
!! TCGAAGCTCTGTTGTTTCCA+CGG + chr7_1:60159440-60159459 None:intergenic 45.0%
CTCAAAGCTCTCAACTCCAA+AGG - chr7_1:60159489-60159508 Msa1027660:three_prime_UTR 45.0%
!!! TTTTTTGGGGGATCTGCCTT+TGG + chr7_1:60159508-60159527 None:intergenic 45.0%
CCCCAAAAAATCTCTTGGTC+AGG - chr7_1:60159518-60159537 Msa1027660:three_prime_UTR 45.0%
AATCTCTTGGTCAGGTGAGA+AGG - chr7_1:60159526-60159545 Msa1027660:three_prime_UTR 45.0%
!! GAGGCGTTTTATCGAACATG+TGG - chr7_1:60159631-60159650 Msa1027660:three_prime_UTR 45.0%
! GCGTTTTATCGAACATGTGG+TGG - chr7_1:60159634-60159653 Msa1027660:three_prime_UTR 45.0%
! GGAGTGCTACAGTACAAGTT+TGG + chr7_1:60159978-60159997 None:intergenic 45.0%
! AGGCATTTTTATCGAGCGCA+GGG - chr7_1:60160081-60160100 Msa1027660:intron 45.0%
!!! GCAGGGTTTTGTTTGTTGGT+GGG - chr7_1:60160098-60160117 Msa1027660:intron 45.0%
!!! CAGGGTTTTGTTTGTTGGTG+GGG - chr7_1:60160099-60160118 Msa1027660:intron 45.0%
!!! AGGGTTTTGTTTGTTGGTGG+GGG - chr7_1:60160100-60160119 Msa1027660:intron 45.0%
TGCTTCAGGACTTCATTTGG+GGG - chr7_1:60160217-60160236 Msa1027660:intron 45.0%
!! AAATGAGCAACTTGTTGGCG+TGG - chr7_1:60160314-60160333 Msa1027660:intron 45.0%
! GTGATGTGGTGCTGGAAATT+GGG - chr7_1:60160352-60160371 Msa1027660:intron 45.0%
TTCTGGTGCATTTGTTCTGG+CGG - chr7_1:60160410-60160429 Msa1027660:intron 45.0%
CAAGTTACGTCTCGAGAGTA+AGG - chr7_1:60160908-60160927 Msa1027660:intron 45.0%
! TGCTACAGTTTTGCTAGCTG+AGG - chr7_1:60160975-60160994 Msa1027660:intron 45.0%
! TACAGTTTTGCTAGCTGAGG+TGG - chr7_1:60160978-60160997 Msa1027660:intron 45.0%
! ACAGTTTTGCTAGCTGAGGT+GGG - chr7_1:60160979-60160998 Msa1027660:intron 45.0%
CAAGTGGAGCTGAATGTTAG+GGG + chr7_1:60161601-60161620 None:intergenic 45.0%
GACAAGTGGAGCTGAATGTT+AGG + chr7_1:60161603-60161622 None:intergenic 45.0%
CACTTTGCGTGTATAGCAGA+GGG - chr7_1:60161651-60161670 Msa1027660:intron 45.0%
GTGTATAGCAGAGGGAACTA+TGG - chr7_1:60161659-60161678 Msa1027660:intron 45.0%
ATGCTGTTGAGTATGGTCAC+TGG + chr7_1:60161784-60161803 None:intergenic 45.0%
!! AGGAAAGCACCAAAACGTCA+TGG + chr7_1:60161872-60161891 None:intergenic 45.0%
! GGGTGACATTTTCTCAGAAG+TGG - chr7_1:60162029-60162048 Msa1027660:intron 45.0%
! GGCCTCCTTTTTAATGTCCA+TGG - chr7_1:60162118-60162137 Msa1027660:intron 45.0%
ATTGATGGGACGATACTCAG+GGG + chr7_1:60162231-60162250 None:intergenic 45.0%
GTAGCTCGAGTGGTTTAACT+GGG + chr7_1:60163352-60163371 None:intergenic 45.0%
AAGGAAGAAGGAATGTCAGC+AGG - chr7_1:60163461-60163480 Msa1027660:intron 45.0%
! ATGTATGACGGAGAAAGGGA+AGG + chr7_1:60163678-60163697 None:intergenic 45.0%
! GGTCTTATAATAAGGGACGG+AGG + chr7_1:60163810-60163829 None:intergenic 45.0%
AAGGGTCCTATAACAAGGGA+CGG - chr7_1:60164311-60164330 Msa1027660:intron 45.0%
AAGGCCTGAAGAACTAACCT+TGG - chr7_1:60164685-60164704 Msa1027660:intron 45.0%
GACCGAACTTTAGCAGAAGA+AGG - chr7_1:60164774-60164793 Msa1027660:intron 45.0%
TTGGCTACAAGTGCCTTTGA+TGG + chr7_1:60165025-60165044 None:intergenic 45.0%
!! ATCAAAGGCACTTGTAGCCA+AGG - chr7_1:60165024-60165043 Msa1027660:CDS 45.0%
TGAGATTGCAATTGTGGTCG+CGG + chr7_1:60165110-60165129 None:intergenic 45.0%
!! TGAGAGCTTTGAGAGTGGCA+TGG + chr7_1:60159482-60159501 None:intergenic 50.0%
!! GGAGTTGAGAGCTTTGAGAG+TGG + chr7_1:60159487-60159506 None:intergenic 50.0%
!! GAGGCATTTTTATCGAGCGC+AGG - chr7_1:60160080-60160099 Msa1027660:intron 50.0%
!!! GAGCGCAGGGTTTTGTTTGT+TGG - chr7_1:60160094-60160113 Msa1027660:intron 50.0%
!!! CGCAGGGTTTTGTTTGTTGG+TGG - chr7_1:60160097-60160116 Msa1027660:intron 50.0%
!!! GGGTTTTGTTTGTTGGTGGG+GGG - chr7_1:60160101-60160120 Msa1027660:intron 50.0%
!! GGACTTCATTTGGGGGTGTT+TGG - chr7_1:60160224-60160243 Msa1027660:intron 50.0%
! GGTGATGTGGTGCTGGAAAT+TGG - chr7_1:60160351-60160370 Msa1027660:intron 50.0%
TTGGTCAAGGAACCAGTTCC+TGG + chr7_1:60160378-60160397 None:intergenic 50.0%
AAGAGTCAGACACGTGACAC+AGG + chr7_1:60161295-60161314 None:intergenic 50.0%
CCTCTGCTATACACGCAAAG+TGG + chr7_1:60161653-60161672 None:intergenic 50.0%
CCACTTTGCGTGTATAGCAG+AGG - chr7_1:60161650-60161669 Msa1027660:intron 50.0%
! GGTATTGGGTCAACTGCTGT+TGG - chr7_1:60161693-60161712 Msa1027660:intron 50.0%
!! GAGTATGGTCACTGGCTTGT+GGG + chr7_1:60161776-60161795 None:intergenic 50.0%
!! TGAGTATGGTCACTGGCTTG+TGG + chr7_1:60161777-60161796 None:intergenic 50.0%
AGAAGTGGTTCTCTTGCTCC+AGG - chr7_1:60162044-60162063 Msa1027660:intron 50.0%
! GCTCTCCCTGCGATTCTTTT+AGG - chr7_1:60162783-60162802 Msa1027660:intron 50.0%
CGTAGCTCGAGTGGTTTAAC+TGG + chr7_1:60163353-60163372 None:intergenic 50.0%
AAACCACTCGAGCTACGCTT+CGG - chr7_1:60163356-60163375 Msa1027660:intron 50.0%
CAGCAGGTCCTGAAAAATGC+AGG - chr7_1:60163477-60163496 Msa1027660:intron 50.0%
! CTACCTCCGTCCCTTGTTAT+AGG + chr7_1:60164320-60164339 None:intergenic 50.0%
! TGGTTTGTGGCGGGAGTTGA+AGG + chr7_1:60159361-60159380 None:intergenic 55.0%
GATTTCGCGGCAGTGGTTTG+TGG + chr7_1:60159374-60159393 None:intergenic 55.0%
TTGTCGCCGGTAGGATTTCG+CGG + chr7_1:60159387-60159406 None:intergenic 55.0%
GAAATCCTACCGGCGACAAC+CGG - chr7_1:60159388-60159407 Msa1027660:three_prime_UTR 55.0%
! TTTTCGACTCCGGTTGTCGC+CGG + chr7_1:60159400-60159419 None:intergenic 55.0%
! TGGTGTCGAGGAAGGTGATG+TGG - chr7_1:60160338-60160357 Msa1027660:intron 55.0%
CTGGAAATTGGGCCAGGAAC+TGG - chr7_1:60160363-60160382 Msa1027660:intron 55.0%
CAGACACGTGACACAGGCAT+TGG + chr7_1:60161289-60161308 None:intergenic 55.0%
GACCTCCCACTCAAACTCCT+CGG - chr7_1:60163322-60163341 Msa1027660:intron 55.0%
ACCTCCCACTCAAACTCCTC+GGG - chr7_1:60163323-60163342 Msa1027660:intron 55.0%
GACACCCGAGGAGTTTGAGT+GGG + chr7_1:60163330-60163349 None:intergenic 55.0%
TGGTTTAACTGGGACACCCG+AGG + chr7_1:60163342-60163361 None:intergenic 55.0%
GGTCCTATAACAAGGGACGG+AGG - chr7_1:60164314-60164333 Msa1027660:intron 55.0%
! TTCGCGGCAGTGGTTTGTGG+CGG + chr7_1:60159371-60159390 None:intergenic 60.0%
CCACTGCCGCGAAATCCTAC+CGG - chr7_1:60159378-60159397 Msa1027660:three_prime_UTR 60.0%
! TTCTACGTAGCTTGCGGCCG+TGG - chr7_1:60159420-60159439 Msa1027660:three_prime_UTR 60.0%
!! GAGCAACTTGTTGGCGTGGC+TGG - chr7_1:60160318-60160337 Msa1027660:intron 60.0%
CGAGGAAGGTGATGTGGTGC+TGG - chr7_1:60160344-60160363 Msa1027660:intron 60.0%
! GTGGTGCTGGAAATTGGGCC+AGG - chr7_1:60160357-60160376 Msa1027660:intron 60.0%
GCTGGGTAGAACCATCGCTC+CGG - chr7_1:60162204-60162223 Msa1027660:CDS 60.0%
TGGGACGATACTCAGGGGTC+CGG + chr7_1:60162226-60162245 None:intergenic 60.0%
ACCCGAGGAGTTTGAGTGGG+AGG + chr7_1:60163327-60163346 None:intergenic 60.0%
GGACACCCGAGGAGTTTGAG+TGG + chr7_1:60163331-60163350 None:intergenic 60.0%
GTACCGAAGCGTAGCTCGAG+TGG + chr7_1:60163362-60163381 None:intergenic 60.0%
! TCGCGGCAGTGGTTTGTGGC+GGG + chr7_1:60159370-60159389 None:intergenic 65.0%
CCGGTAGGATTTCGCGGCAG+TGG + chr7_1:60159381-60159400 None:intergenic 65.0%
! TGTTGGCGTGGCTGGTGTCG+AGG - chr7_1:60160326-60160345 Msa1027660:intron 65.0%
AGGAGGAGACTGCTCTGCGC+TGG - chr7_1:60162186-60162205 Msa1027660:CDS 65.0%
GGAGGAGACTGCTCTGCGCT+GGG - chr7_1:60162187-60162206 Msa1027660:CDS 65.0%
TACTCAGGGGTCCGGAGCGA+TGG + chr7_1:60162218-60162237 None:intergenic 65.0%
CGACTCCGGTTGTCGCCGGT+AGG + chr7_1:60159396-60159415 None:intergenic 70.0%
! GGCGTGGCTGGTGTCGAGGA+AGG - chr7_1:60160330-60160349 Msa1027660:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 60159278 60165162 60159278 ID=Msa1027660;Name=Msa1027660
chr7_1 mRNA 60159278 60165162 60159278 ID=Msa1027660-mRNA-1;Parent=Msa1027660;Name=Msa1027660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=16|0.88|0.9|1|0.88|0.9|10|414|340
chr7_1 exon 60159278 60159757 60159278 ID=Msa1027660-mRNA-1:exon:12390;Parent=Msa1027660-mRNA-1
chr7_1 exon 60159899 60159985 60159899 ID=Msa1027660-mRNA-1:exon:12389;Parent=Msa1027660-mRNA-1
chr7_1 exon 60160769 60160852 60160769 ID=Msa1027660-mRNA-1:exon:12388;Parent=Msa1027660-mRNA-1
chr7_1 exon 60161769 60161821 60161769 ID=Msa1027660-mRNA-1:exon:12387;Parent=Msa1027660-mRNA-1
chr7_1 exon 60162168 60162252 60162168 ID=Msa1027660-mRNA-1:exon:12386;Parent=Msa1027660-mRNA-1
chr7_1 exon 60162375 60162470 60162375 ID=Msa1027660-mRNA-1:exon:12385;Parent=Msa1027660-mRNA-1
chr7_1 exon 60162946 60163044 60162946 ID=Msa1027660-mRNA-1:exon:12384;Parent=Msa1027660-mRNA-1
chr7_1 exon 60163597 60163653 60163597 ID=Msa1027660-mRNA-1:exon:12383;Parent=Msa1027660-mRNA-1
chr7_1 exon 60164000 60164149 60164000 ID=Msa1027660-mRNA-1:exon:12382;Parent=Msa1027660-mRNA-1
chr7_1 exon 60164901 60165162 60164901 ID=Msa1027660-mRNA-1:exon:12381;Parent=Msa1027660-mRNA-1
chr7_1 five_prime_UTR 60165147 60165162 60165147 ID=Msa1027660-mRNA-1:five_prime_utr;Parent=Msa1027660-mRNA-1
chr7_1 CDS 60164901 60165146 60164901 ID=Msa1027660-mRNA-1:cds;Parent=Msa1027660-mRNA-1
chr7_1 CDS 60164000 60164149 60164000 ID=Msa1027660-mRNA-1:cds;Parent=Msa1027660-mRNA-1
chr7_1 CDS 60163597 60163653 60163597 ID=Msa1027660-mRNA-1:cds;Parent=Msa1027660-mRNA-1
chr7_1 CDS 60162946 60163044 60162946 ID=Msa1027660-mRNA-1:cds;Parent=Msa1027660-mRNA-1
chr7_1 CDS 60162375 60162470 60162375 ID=Msa1027660-mRNA-1:cds;Parent=Msa1027660-mRNA-1
chr7_1 CDS 60162168 60162252 60162168 ID=Msa1027660-mRNA-1:cds;Parent=Msa1027660-mRNA-1
chr7_1 CDS 60161769 60161821 60161769 ID=Msa1027660-mRNA-1:cds;Parent=Msa1027660-mRNA-1
chr7_1 CDS 60160769 60160852 60160769 ID=Msa1027660-mRNA-1:cds;Parent=Msa1027660-mRNA-1
chr7_1 CDS 60159899 60159985 60159899 ID=Msa1027660-mRNA-1:cds;Parent=Msa1027660-mRNA-1
chr7_1 CDS 60159692 60159757 60159692 ID=Msa1027660-mRNA-1:cds;Parent=Msa1027660-mRNA-1
chr7_1 three_prime_UTR 60159278 60159691 60159278 ID=Msa1027660-mRNA-1:three_prime_utr;Parent=Msa1027660-mRNA-1
Gene Sequence

>Msa1027660

ATGACTCATTCTCTTTCTCACCTATGTTATCTTCAAACACTCCCGCCAATATCTCACAACGCAACCTTCAACTCCCGCCACAAACCACTGCCGCGAAATCCTACCGGCGACAACCGGAGTCGAAAATTCTACGTAGCTTGCGGCCGTGGAAACAACAGAGCTTCGACGCCAAACAAAGACGATTACCATGCCACTCTCAAAGCTCTCAACTCCAAAGGCAGATCCCCCAAAAAATCTCTTGGTCAGAATTATATGTTGAATTCTGACATAAATGAGCAACTTGTTGGCGTGGCTGGTGTCGAGGAAGGTGATGTGGTGCTGGAAATTGGGCCAGGAACTGGTTCCTTGACCAATACTCTAATAAATTCTGGTGCATTTGTTCTGGCGGTTGAAAAGGATAAACACATGGCTGCCCTCGTGAGTGAAAGATTTTCCAGTACAGGAAAGTTGAAGGTTTTGAATGAGGATATCGTCAAATGTCATGTGCGCTCCCATATATCATCATTGTTTGGAAGCACAAAGGATATAGATTCAGATACTAGAAAAGCAAAAGTGGTTGCTAACATTCCTTTCTATATCAGTACAGATGTGATCAAATTACTACTCCCAATGGGTGACATTTTCTCAGAAGTGGTTCTCTTGCTCCAGGAGGAGACTGCTCTGCGCTGGGTAGAACCATCGCTCCGGACCCCTGAGTATCGTCCCATCAATATATTTGTTAATTTCTACTCAGATCCTGAGTACAAATTTAAGGTCGCAAGAACAAATTTTTTCCCTCAGCCTAATGTTGATGCAGCCGTTGTCTCATTCAAACTGAAGCAACCATCAGAATATCCCCAAGTTTCGTCGAATAAAAGCTTCTTTTCAATGCGTAAGATGATACGCAAGTCACTTCAACACATGTGTACATCCCTTGAGATAGAAGAAGCTTTAGAAAGCATAGGTCTTCTAAGTACTTCAAGGCCTGAAGAACTAACCTTGGATGATTTTGTAAAACTGCACAACTCAATTACCAAAGAGTAG

Protein sequence

>Msa1027660

MTHSLSHLCYLQTLPPISHNATFNSRHKPLPRNPTGDNRSRKFYVACGRGNNRASTPNKDDYHATLKALNSKGRSPKKSLGQNYMLNSDINEQLVGVAGVEEGDVVLEIGPGTGSLTNTLINSGAFVLAVEKDKHMAALVSERFSSTGKLKVLNEDIVKCHVRSHISSLFGSTKDIDSDTRKAKVVANIPFYISTDVIKLLLPMGDIFSEVVLLLQEETALRWVEPSLRTPEYRPINIFVNFYSDPEYKFKVARTNFFPQPNVDAAVVSFKLKQPSEYPQVSSNKSFFSMRKMIRKSLQHMCTSLEIEEALESIGLLSTSRPEELTLDDFVKLHNSITKE*