AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0270730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0270730 MtrunA17_Chr2g0278051 77.959 245 14 2 1 207 1 243 8.07e-128 360
Msa0270730 MtrunA17_Chr2g0278261 51.256 199 56 3 49 206 49 247 5.75e-62 193
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0270730 AT3G26070.1 52.151 186 48 2 62 206 56 241 3.61e-61 191
Msa0270730 AT3G26080.1 47.917 192 60 3 55 206 42 233 2.89e-52 168
Msa0270730 AT3G26080.2 41.629 221 60 4 55 206 42 262 5.43e-46 153

Find 65 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCTAACTTGAAGCATTT+TGG 0.105595 2_3:-1983413 Msa0270730:three_prime_UTR
AAATTTGATACCTTCAAAAT+TGG 0.195834 2_3:-1984576 Msa0270730:CDS
ATCAAGAAGTTCTTCTTTAA+TGG 0.206372 2_3:+1986390 None:intergenic
GCCACTTTCTTTGCATTTAG+AGG 0.223580 2_3:+1984603 None:intergenic
TCAACCCTTTGTTGGTCTTC+AGG 0.234480 2_3:+1986331 None:intergenic
CACTCTCAGGGCCCAAAATA+TGG 0.237918 2_3:-1984758 Msa0270730:CDS
AAACTTGTTCATCTTGAAAA+TGG 0.247984 2_3:-1983600 Msa0270730:CDS
ACGGTCCAGATTCCATATTT+TGG 0.250687 2_3:+1984746 None:intergenic
TGAACTTGAAATAACATATT+TGG 0.312424 2_3:-1983807 Msa0270730:CDS
TTGCCTTTCTTAAAGATTGC+AGG 0.324447 2_3:+1986424 None:intergenic
TTTAAATCGTTTGTTTGGTT+TGG 0.352423 2_3:+1986647 None:intergenic
CAATCAATGCTGACACTCTC+AGG 0.359671 2_3:-1984771 Msa0270730:CDS
AATGAATATAATAATGTAAT+GGG 0.376709 2_3:-1983338 Msa0270730:three_prime_UTR
GTGAGTTTAAATCGTTTGTT+TGG 0.379679 2_3:+1986642 None:intergenic
AGGGCCCAAAATATGGAATC+TGG 0.402604 2_3:-1984751 Msa0270730:CDS
TGCCTCCAGAGCAAAGCTTT+AGG 0.407184 2_3:+1983245 None:intergenic
AACGATTTAAACTCACCTAA+TGG 0.414557 2_3:-1986635 Msa0270730:exon
TTTGATACCTTCAAAATTGG+AGG 0.416449 2_3:-1984573 Msa0270730:CDS
CAACCTGATCAACCCTTTGT+TGG 0.421516 2_3:+1986323 None:intergenic
TAGTAGCAAGGTTGTGATTG+TGG 0.421596 2_3:+1986482 None:intergenic
TTCCCTGCAATCTTTAAGAA+AGG 0.424398 2_3:-1986427 Msa0270730:CDS
AAATGGTGGATCCATCTTAC+CGG 0.426574 2_3:-1983583 Msa0270730:CDS
CTTCAAGTTAGCTTGAATAG+TGG 0.427481 2_3:+1983421 None:intergenic
AAGTAGAAGATAAGGCCATT+AGG 0.430468 2_3:+1986620 None:intergenic
TTTATGATGTGAATGATTTG+TGG 0.440863 2_3:+1986576 None:intergenic
AGTTCACCACGAGCTGTGTC+AGG 0.463279 2_3:+1983824 None:intergenic
AGACCAACAAAGGGTTGATC+AGG 0.472264 2_3:-1986326 Msa0270730:intron
GAATAAGAATAAGAAGATAG+TGG 0.474828 2_3:+1986538 None:intergenic
CACCTAAAGCTTTGCTCTGG+AGG 0.479558 2_3:-1983247 Msa0270730:three_prime_UTR
AAAGAGTGAAGTAGAAGATA+AGG 0.481353 2_3:+1986612 None:intergenic
TATCACCTAAAGCTTTGCTC+TGG 0.481924 2_3:-1983250 Msa0270730:three_prime_UTR
AATAAGAAGATAGTGGTGAA+TGG 0.489559 2_3:+1986545 None:intergenic
TGCCTTTCTTAAAGATTGCA+GGG 0.492269 2_3:+1986425 None:intergenic
GAATGAATATAATAATGTAA+TGG 0.492853 2_3:-1983339 Msa0270730:three_prime_UTR
CATGCAGGAACCCGGTAAGA+TGG 0.494136 2_3:+1983572 None:intergenic
CGACTTCAGAAAGCGCTGAC+GGG 0.508365 2_3:+1983478 None:intergenic
ACCTCTAAATGCAAAGAAAG+TGG 0.508669 2_3:-1984604 Msa0270730:CDS
CTTGTTCATCTTGAAAATGG+TGG 0.510401 2_3:-1983597 Msa0270730:CDS
CCTTTGTTGGTCTTCAGGAG+TGG 0.511583 2_3:+1986336 None:intergenic
TCGACTTCAGAAAGCGCTGA+CGG 0.520533 2_3:+1983477 None:intergenic
AAGAAAACACAACAGTGATA+AGG 0.521202 2_3:+1983522 None:intergenic
GGGTTTATTTCTCTTGAATG+TGG 0.527364 2_3:-1983317 Msa0270730:three_prime_UTR
ATCTGGACCGTTCTTCAACC+AGG 0.530767 2_3:-1984734 Msa0270730:intron
GCTGTGTCAGGAGCCTTGAC+AGG 0.549937 2_3:+1983836 None:intergenic
CACTCCTGAAGACCAACAAA+GGG 0.562257 2_3:-1986335 Msa0270730:CDS
TCCTCGATCAAGTGATGCAA+TGG 0.566938 2_3:+1986366 None:intergenic
AAGAAGATAGTGGTGAATGG+AGG 0.568929 2_3:+1986548 None:intergenic
CAGTATATCATGCAGGAACC+CGG 0.569836 2_3:+1983564 None:intergenic
GGTTGTGATTGTGGTAGATG+AGG 0.590635 2_3:+1986491 None:intergenic
AATCAATGCTGACACTCTCA+GGG 0.592341 2_3:-1984770 Msa0270730:CDS
CCACTCCTGAAGACCAACAA+AGG 0.595548 2_3:-1986336 Msa0270730:CDS
AATGGTGGATCCATCTTACC+GGG 0.603396 2_3:-1983582 Msa0270730:CDS
ATAATGACAGTATATCATGC+AGG 0.622717 2_3:+1983557 None:intergenic
GTTGTGATTGTGGTAGATGA+GGG 0.623766 2_3:+1986492 None:intergenic
TGTGTCACCTGGTTGAAGAA+CGG 0.624616 2_3:+1984727 None:intergenic
ACATTTGCAGATACCTGTCA+AGG 0.625872 2_3:-1983849 Msa0270730:intron
TAATTTGACAGGGTATCAAG+AGG 0.636818 2_3:-1983632 Msa0270730:intron
AGGGTATCAAGAGGTGACAA+AGG 0.637311 2_3:-1983623 Msa0270730:CDS
GAATGATTTGTGGTGTTGAG+AGG 0.643015 2_3:+1986586 None:intergenic
CTCGAGTGAACTGTTAATTG+AGG 0.645432 2_3:+1983140 None:intergenic
ATGAATATAATAATGTAATG+GGG 0.645736 2_3:-1983337 Msa0270730:three_prime_UTR
AAGGCTCCTGACACAGCTCG+TGG 0.649152 2_3:-1983830 Msa0270730:CDS
GCCATTGCATCACTTGATCG+AGG 0.654824 2_3:-1986367 Msa0270730:CDS
TTGTGATTGTGGTAGATGAG+GGG 0.690034 2_3:+1986493 None:intergenic
CATATTTGGATGAAGAACTG+AGG 0.704904 2_3:-1983793 Msa0270730:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAATATAATAATGTAAT+GGG - chr2_3:1986448-1986467 Msa0270730:CDS 10.0%
!! TAACAAGATAAAAATAGAAA+AGG - chr2_3:1983880-1983899 Msa0270730:intron 15.0%
!!! TTCTGAAAATAAGATAAAAA+TGG - chr2_3:1983951-1983970 Msa0270730:intron 15.0%
!! TTAGATTTGATATGATAAAT+TGG - chr2_3:1984337-1984356 Msa0270730:intron 15.0%
!! TATTTATACTCATATAATGA+AGG - chr2_3:1984453-1984472 Msa0270730:intron 15.0%
!! ATTTCTACAAATTAATGATT+TGG + chr2_3:1985421-1985440 None:intergenic 15.0%
!! TTAAAAATGAAATTCTATTG+AGG - chr2_3:1985705-1985724 Msa0270730:intron 15.0%
!! GAATGAATATAATAATGTAA+TGG - chr2_3:1986447-1986466 Msa0270730:CDS 15.0%
!! ATGAATATAATAATGTAATG+GGG - chr2_3:1986449-1986468 Msa0270730:CDS 15.0%
!! TTAAGTAGTTTATCCAAATA+GGG + chr2_3:1983720-1983739 None:intergenic 20.0%
!! ATTAAGTAGTTTATCCAAAT+AGG + chr2_3:1983721-1983740 None:intergenic 20.0%
!! TTGGATAAACTACTTAATTA+AGG - chr2_3:1983723-1983742 Msa0270730:intron 20.0%
!! AATAAGATAAAAATGGCTTA+TGG - chr2_3:1983958-1983977 Msa0270730:intron 20.0%
!! AAATCTAACAAAAAACAAAG+GGG + chr2_3:1984325-1984344 None:intergenic 20.0%
!! CAAATCTAACAAAAAACAAA+GGG + chr2_3:1984326-1984345 None:intergenic 20.0%
!! TCAAATCTAACAAAAAACAA+AGG + chr2_3:1984327-1984346 None:intergenic 20.0%
!! AAAACAAGTATATAGAGTAT+AGG + chr2_3:1984615-1984634 None:intergenic 20.0%
!! GATTTCATTCAAACTTAAAT+AGG - chr2_3:1984786-1984805 Msa0270730:CDS 20.0%
!! AAATTTGATACCTTCAAAAT+TGG - chr2_3:1985210-1985229 Msa0270730:intron 20.0%
!! TATGATGATCAAAGTAATTA+TGG + chr2_3:1985913-1985932 None:intergenic 20.0%
!! TGAACTTGAAATAACATATT+TGG - chr2_3:1985979-1985998 Msa0270730:intron 20.0%
!! TTTCTCATTATAATTTGACA+GGG - chr2_3:1986144-1986163 Msa0270730:intron 20.0%
! TTTAAATCGTTTGTTTGGTT+TGG + chr2_3:1983142-1983161 None:intergenic 25.0%
! TTTATGATGTGAATGATTTG+TGG + chr2_3:1983213-1983232 None:intergenic 25.0%
! GAATAAGAATAAGAAGATAG+TGG + chr2_3:1983251-1983270 None:intergenic 25.0%
! ATCAAGAAGTTCTTCTTTAA+TGG + chr2_3:1983399-1983418 None:intergenic 25.0%
! TAGTTTACTTGATGGAAAAT+GGG - chr2_3:1983620-1983639 Msa0270730:CDS 25.0%
! ATATGGTAAGGAAAAAGAAA+TGG + chr2_3:1983692-1983711 None:intergenic 25.0%
! ATATAGAAGCTGAAAATTAG+AGG + chr2_3:1984533-1984552 None:intergenic 25.0%
!! GATTTACAGTATGTATTTTG+TGG + chr2_3:1984638-1984657 None:intergenic 25.0%
! ACATATGCAAATGTTAGAAT+TGG + chr2_3:1985124-1985143 None:intergenic 25.0%
! TAAACGAATCAATATTCTGT+AGG - chr2_3:1985143-1985162 Msa0270730:intron 25.0%
! TTGTAATATTCTAGATGTGA+TGG - chr2_3:1985286-1985305 Msa0270730:intron 25.0%
!! GTTTCTCTTAAAGTTTTTCT+AGG - chr2_3:1985450-1985469 Msa0270730:intron 25.0%
!!! GTAACATGTATAAGTTTTGT+TGG + chr2_3:1985762-1985781 None:intergenic 25.0%
! ACTGTGGAATTAAATACATA+GGG + chr2_3:1985818-1985837 None:intergenic 25.0%
! AACTGTGGAATTAAATACAT+AGG + chr2_3:1985819-1985838 None:intergenic 25.0%
! GTTTGTTTATATTACTGCAT+TGG - chr2_3:1986035-1986054 Msa0270730:intron 25.0%
! TAATGTCTATATATACCACA+TGG + chr2_3:1986104-1986123 None:intergenic 25.0%
! CTTTCTCATTATAATTTGAC+AGG - chr2_3:1986143-1986162 Msa0270730:intron 25.0%
!! AAACTTGTTCATCTTGAAAA+TGG - chr2_3:1986186-1986205 Msa0270730:intron 25.0%
!!! TGTTTCAAATTGCTTTTTGT+TGG - chr2_3:1986606-1986625 Msa0270730:CDS 25.0%
GTGAGTTTAAATCGTTTGTT+TGG + chr2_3:1983147-1983166 None:intergenic 30.0%
AACGATTTAAACTCACCTAA+TGG - chr2_3:1983151-1983170 Msa0270730:three_prime_UTR 30.0%
AAAGAGTGAAGTAGAAGATA+AGG + chr2_3:1983177-1983196 None:intergenic 30.0%
! AATAAGAAGATAGTGGTGAA+TGG + chr2_3:1983244-1983263 None:intergenic 30.0%
! ATTTTTGTGAGATAGTAGCA+AGG + chr2_3:1983319-1983338 None:intergenic 30.0%
TTGCTACTATCTCACAAAAA+TGG - chr2_3:1983318-1983337 Msa0270730:three_prime_UTR 30.0%
ATGAAATGTTGCAGAAAACA+AGG + chr2_3:1983499-1983518 None:intergenic 30.0%
CTAGTTTACTTGATGGAAAA+TGG - chr2_3:1983619-1983638 Msa0270730:CDS 30.0%
ATGATATGGCAATCCTAATA+AGG + chr2_3:1983769-1983788 None:intergenic 30.0%
ATTTGCAACTTATAGCACAA+GGG + chr2_3:1983795-1983814 None:intergenic 30.0%
TATTTGCAACTTATAGCACA+AGG + chr2_3:1983796-1983815 None:intergenic 30.0%
GACTTATTTCATCTCATCTA+CGG + chr2_3:1984040-1984059 None:intergenic 30.0%
! TTGTTGCTACTAGCTTAAAT+AGG - chr2_3:1984424-1984443 Msa0270730:intron 30.0%
!! TTAGTCTTGCGAAAATGAAA+GGG + chr2_3:1984571-1984590 None:intergenic 30.0%
!! TTTAGTCTTGCGAAAATGAA+AGG + chr2_3:1984572-1984591 None:intergenic 30.0%
!!! CAACTTTTTTCACTCTGTTT+CGG - chr2_3:1984715-1984734 Msa0270730:intron 30.0%
GTTTGAATGAAATCCAAAAC+AGG + chr2_3:1984780-1984799 None:intergenic 30.0%
! CTGATAATGAATGACCTTAA+AGG - chr2_3:1984879-1984898 Msa0270730:intron 30.0%
AATGACCTTAAAGGTTTACT+TGG - chr2_3:1984888-1984907 Msa0270730:intron 30.0%
ATGACCTTAAAGGTTTACTT+GGG - chr2_3:1984889-1984908 Msa0270730:intron 30.0%
GTTACTGATCTCAAAAACTT+TGG + chr2_3:1984984-1985003 None:intergenic 30.0%
TTTGATACCTTCAAAATTGG+AGG - chr2_3:1985213-1985232 Msa0270730:intron 30.0%
ATATATCTGACCTCACTTTA+CGG + chr2_3:1985353-1985372 None:intergenic 30.0%
AGAAGAGTAGATATGATGAA+GGG + chr2_3:1985504-1985523 None:intergenic 30.0%
AAGAAGAGTAGATATGATGA+AGG + chr2_3:1985505-1985524 None:intergenic 30.0%
TAGAAAAGAAGGTGAAAACT+TGG + chr2_3:1985573-1985592 None:intergenic 30.0%
!!! TAAGTTTTGTTGGAACTTGT+TGG + chr2_3:1985752-1985771 None:intergenic 30.0%
! AGCAATTTGAAGTTGAGATT+AGG + chr2_3:1986071-1986090 None:intergenic 30.0%
ATAATGACAGTATATCATGC+AGG + chr2_3:1986232-1986251 None:intergenic 30.0%
AAGAAAACACAACAGTGATA+AGG + chr2_3:1986267-1986286 None:intergenic 30.0%
! TTGTGTTTTCTTCCTTTCAA+GGG - chr2_3:1986275-1986294 Msa0270730:intron 30.0%
!! AAGCTAACTTGAAGCATTTT+GGG - chr2_3:1986374-1986393 Msa0270730:CDS 30.0%
AAGTAGAAGATAAGGCCATT+AGG + chr2_3:1983169-1983188 None:intergenic 35.0%
! TTCCCTGCAATCTTTAAGAA+AGG - chr2_3:1983359-1983378 Msa0270730:three_prime_UTR 35.0%
TGCCTTTCTTAAAGATTGCA+GGG + chr2_3:1983364-1983383 None:intergenic 35.0%
TTGCCTTTCTTAAAGATTGC+AGG + chr2_3:1983365-1983384 None:intergenic 35.0%
GCAGAAAACAAGGCATATAA+AGG + chr2_3:1983489-1983508 None:intergenic 35.0%
TTGGATTAACTGCTTCAAGT+TGG + chr2_3:1983581-1983600 None:intergenic 35.0%
TCAAGTAAACTAGACTTGAG+AGG + chr2_3:1983612-1983631 None:intergenic 35.0%
! CTCAAGTCTAGTTTACTTGA+TGG - chr2_3:1983612-1983631 Msa0270730:CDS 35.0%
TCAGTCAATCTTGCAAACTA+AGG - chr2_3:1983662-1983681 Msa0270730:intron 35.0%
! TCTTTTTCCTTACCATATGC+AGG - chr2_3:1983694-1983713 Msa0270730:intron 35.0%
CTACTTAATTAAGGCCTGTT+TGG - chr2_3:1983732-1983751 Msa0270730:intron 35.0%
AATAAGCTGTTTGTCCAAAC+AGG - chr2_3:1983812-1983831 Msa0270730:CDS 35.0%
!! TTTTCAGAAGCTCTCTAAGA+TGG + chr2_3:1983940-1983959 None:intergenic 35.0%
TATGAACTATGAGTCTGTCT+GGG + chr2_3:1984065-1984084 None:intergenic 35.0%
GTCTATGTCAATGCTTCATA+GGG + chr2_3:1984094-1984113 None:intergenic 35.0%
TGTCTATGTCAATGCTTCAT+AGG + chr2_3:1984095-1984114 None:intergenic 35.0%
!! GCACTGACACTTTTAATTGA+AGG + chr2_3:1984188-1984207 None:intergenic 35.0%
ACACGTTTGATGCATCATAA+TGG + chr2_3:1984265-1984284 None:intergenic 35.0%
TAGATGGTTAGTGAAATGAG+TGG + chr2_3:1984395-1984414 None:intergenic 35.0%
GCAACAATGATCAATCTAGA+TGG + chr2_3:1984411-1984430 None:intergenic 35.0%
TAACACTGTCAAAATGTACC+AGG + chr2_3:1984832-1984851 None:intergenic 35.0%
ACCTCTAAATGCAAAGAAAG+TGG - chr2_3:1985182-1985201 Msa0270730:intron 35.0%
! TACTAAGCCTCCAATTTTGA+AGG + chr2_3:1985223-1985242 None:intergenic 35.0%
TCACTTTACGGGATAAGATT+TGG + chr2_3:1985341-1985360 None:intergenic 35.0%
AAATCTTATCCCGTAAAGTG+AGG - chr2_3:1985340-1985359 Msa0270730:intron 35.0%
TATATCTGACCTCACTTTAC+GGG + chr2_3:1985352-1985371 None:intergenic 35.0%
GTAAAGTGAGGTCAGATATA+TGG - chr2_3:1985352-1985371 Msa0270730:intron 35.0%
AGGATCTATCGTAGAAAAGA+AGG + chr2_3:1985584-1985603 None:intergenic 35.0%
GTGGTAAGACTAGACAATAT+AGG + chr2_3:1985650-1985669 None:intergenic 35.0%
AAGAGATGAGAATGTTGTGT+TGG + chr2_3:1985677-1985696 None:intergenic 35.0%
CAACATTCTCATCTCTTCTT+AGG - chr2_3:1985680-1985699 Msa0270730:intron 35.0%
ACATAGGGAATTGCAGATAA+AGG + chr2_3:1985803-1985822 None:intergenic 35.0%
GAGTATTATGGTACTAACTG+TGG + chr2_3:1985834-1985853 None:intergenic 35.0%
!! TACACACATCAGGAGTATTA+TGG + chr2_3:1985846-1985865 None:intergenic 35.0%
CATATTTGGATGAAGAACTG+AGG - chr2_3:1985993-1986012 Msa0270730:intron 35.0%
AAGTTGAGATTAGGTACACT+GGG + chr2_3:1986062-1986081 None:intergenic 35.0%
TTGCTTAACTATCAACCATG+TGG - chr2_3:1986086-1986105 Msa0270730:intron 35.0%
! TAATTTGACAGGGTATCAAG+AGG - chr2_3:1986154-1986173 Msa0270730:intron 35.0%
CTTGTTCATCTTGAAAATGG+TGG - chr2_3:1986189-1986208 Msa0270730:intron 35.0%
! GTTGTGTTTTCTTCCTTTCA+AGG - chr2_3:1986274-1986293 Msa0270730:intron 35.0%
! TGTGTTTTCTTCCTTTCAAG+GGG - chr2_3:1986276-1986295 Msa0270730:intron 35.0%
! CTTCAAGTTAGCTTGAATAG+TGG + chr2_3:1986368-1986387 None:intergenic 35.0%
!! CAAGCTAACTTGAAGCATTT+TGG - chr2_3:1986373-1986392 Msa0270730:CDS 35.0%
! GGGTTTATTTCTCTTGAATG+TGG - chr2_3:1986469-1986488 Msa0270730:CDS 35.0%
!! TGCTTTTTGTTGGATAAGTG+TGG - chr2_3:1986616-1986635 Msa0270730:CDS 35.0%
! GAATGATTTGTGGTGTTGAG+AGG + chr2_3:1983203-1983222 None:intergenic 40.0%
! AAGAAGATAGTGGTGAATGG+AGG + chr2_3:1983241-1983260 None:intergenic 40.0%
TTGTGATTGTGGTAGATGAG+GGG + chr2_3:1983296-1983315 None:intergenic 40.0%
GTTGTGATTGTGGTAGATGA+GGG + chr2_3:1983297-1983316 None:intergenic 40.0%
TAGTAGCAAGGTTGTGATTG+TGG + chr2_3:1983307-1983326 None:intergenic 40.0%
AGTTTGCAAGATTGACTGAG+AGG + chr2_3:1983661-1983680 None:intergenic 40.0%
ATTAAGGCCTGTTTGGACTT+TGG - chr2_3:1983739-1983758 Msa0270730:intron 40.0%
! GGACTTTGGATTGCCTTATT+AGG - chr2_3:1983753-1983772 Msa0270730:intron 40.0%
TAGCACAAGGGCTTATGATA+TGG + chr2_3:1983783-1983802 None:intergenic 40.0%
ACTTATGCTATGAGCACTCA+GGG + chr2_3:1983838-1983857 None:intergenic 40.0%
CTTCCATAAGCTCTCTCAAA+CGG - chr2_3:1983996-1984015 Msa0270730:intron 40.0%
CTATGAACTATGAGTCTGTC+TGG + chr2_3:1984066-1984085 None:intergenic 40.0%
CATTGACACATGTCAAACAC+CGG - chr2_3:1984157-1984176 Msa0270730:intron 40.0%
!! CTTTTAATTGAAGGCGTGTC+CGG + chr2_3:1984179-1984198 None:intergenic 40.0%
! AACAAAAAACAAAGGGGCAC+TGG + chr2_3:1984319-1984338 None:intergenic 40.0%
AGCACCCAAGTAAACCTTTA+AGG + chr2_3:1984896-1984915 None:intergenic 40.0%
AATCAATGCTGACACTCTCA+GGG - chr2_3:1985016-1985035 Msa0270730:intron 40.0%
! CGGTCCAGATTCCATATTTT+GGG + chr2_3:1985042-1985061 None:intergenic 40.0%
! ACGGTCCAGATTCCATATTT+TGG + chr2_3:1985043-1985062 None:intergenic 40.0%
TCAATTTCACTTGTGTCACC+TGG + chr2_3:1985073-1985092 None:intergenic 40.0%
! GCCACTTTCTTTGCATTTAG+AGG + chr2_3:1985186-1985205 None:intergenic 40.0%
CTTTACGGGATAAGATTTGG+TGG + chr2_3:1985338-1985357 None:intergenic 40.0%
AAAACTTGGCTTAGGTGGTT+TGG + chr2_3:1985559-1985578 None:intergenic 40.0%
AGAAGGTGAAAACTTGGCTT+AGG + chr2_3:1985567-1985586 None:intergenic 40.0%
AGATGAGAATGTTGTGTTGG+CGG + chr2_3:1985674-1985693 None:intergenic 40.0%
! CAGAAGCATATACACACATC+AGG + chr2_3:1985856-1985875 None:intergenic 40.0%
ACATTTGCAGATACCTGTCA+AGG - chr2_3:1985937-1985956 Msa0270730:intron 40.0%
GAAGTTGAGATTAGGTACAC+TGG + chr2_3:1986063-1986082 None:intergenic 40.0%
!! AAATGGTGGATCCATCTTAC+CGG - chr2_3:1986203-1986222 Msa0270730:intron 40.0%
!!! GGTAGTTTTAACCCCTTGAA+AGG + chr2_3:1986290-1986309 None:intergenic 40.0%
TATCACCTAAAGCTTTGCTC+TGG - chr2_3:1986536-1986555 Msa0270730:CDS 40.0%
CTCGAGTGAACTGTTAATTG+AGG + chr2_3:1986649-1986668 None:intergenic 40.0%
GGTTGTGATTGTGGTAGATG+AGG + chr2_3:1983298-1983317 None:intergenic 45.0%
TCCTCGATCAAGTGATGCAA+TGG + chr2_3:1983423-1983442 None:intergenic 45.0%
CACTCCTGAAGACCAACAAA+GGG - chr2_3:1983451-1983470 Msa0270730:three_prime_UTR 45.0%
!! TCAACCCTTTGTTGGTCTTC+AGG + chr2_3:1983458-1983477 None:intergenic 45.0%
! AGACCAACAAAGGGTTGATC+AGG - chr2_3:1983460-1983479 Msa0270730:three_prime_UTR 45.0%
CAACCTGATCAACCCTTTGT+TGG + chr2_3:1983466-1983485 None:intergenic 45.0%
AATAGGGCCTGCATATGGTA+AGG + chr2_3:1983704-1983723 None:intergenic 45.0%
TACCATATGCAGGCCCTATT+TGG - chr2_3:1983704-1983723 Msa0270730:intron 45.0%
ATCCAAATAGGGCCTGCATA+TGG + chr2_3:1983709-1983728 None:intergenic 45.0%
AGGCAATCCAAAGTCCAAAC+AGG + chr2_3:1983749-1983768 None:intergenic 45.0%
CACTTATGCTATGAGCACTC+AGG + chr2_3:1983839-1983858 None:intergenic 45.0%
AGACCGTTTGAGAGAGCTTA+TGG + chr2_3:1984002-1984021 None:intergenic 45.0%
CATCTACGGACATAATCACG+TGG + chr2_3:1984026-1984045 None:intergenic 45.0%
CGTGATTAGATGTGTCAGTG+CGG - chr2_3:1984121-1984140 Msa0270730:intron 45.0%
AGGTCTCCTAAACTACCATC+TGG - chr2_3:1984806-1984825 Msa0270730:CDS 45.0%
TCAAAATGTACCAGGCCAGA+TGG + chr2_3:1984824-1984843 None:intergenic 45.0%
CAATCAATGCTGACACTCTC+AGG - chr2_3:1985015-1985034 Msa0270730:intron 45.0%
AGGGCCCAAAATATGGAATC+TGG - chr2_3:1985035-1985054 Msa0270730:intron 45.0%
TGTGTCACCTGGTTGAAGAA+CGG + chr2_3:1985062-1985081 None:intergenic 45.0%
! GGTGGTTGGTGTATTCGTAT+AGG + chr2_3:1985320-1985339 None:intergenic 45.0%
!! ACGGGATAAGATTTGGTGGT+TGG + chr2_3:1985334-1985353 None:intergenic 45.0%
AGGTGAAAACTTGGCTTAGG+TGG + chr2_3:1985564-1985583 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAGTT+GGG + chr2_3:1985609-1985628 None:intergenic 45.0%
TAGAGAGAGAGAGAGAGAGT+TGG + chr2_3:1985610-1985629 None:intergenic 45.0%
! AGGGTATCAAGAGGTGACAA+AGG - chr2_3:1986163-1986182 Msa0270730:intron 45.0%
!! AATGGTGGATCCATCTTACC+GGG - chr2_3:1986204-1986223 Msa0270730:intron 45.0%
CAGTATATCATGCAGGAACC+CGG + chr2_3:1986225-1986244 None:intergenic 45.0%
GCCATTGCATCACTTGATCG+AGG - chr2_3:1983419-1983438 Msa0270730:three_prime_UTR 50.0%
!! CCTTTGTTGGTCTTCAGGAG+TGG + chr2_3:1983453-1983472 None:intergenic 50.0%
CCACTCCTGAAGACCAACAA+AGG - chr2_3:1983450-1983469 Msa0270730:three_prime_UTR 50.0%
! GACTTGAGAGGCTGCTTTGT+TGG + chr2_3:1983600-1983619 None:intergenic 50.0%
AAATCCAAAACAGGCCAGCC+CGG + chr2_3:1984771-1984790 None:intergenic 50.0%
TCCTAAACTACCATCTGGCC+TGG - chr2_3:1984811-1984830 Msa0270730:CDS 50.0%
ACCAGGCCAGATGGTAGTTT+AGG + chr2_3:1984815-1984834 None:intergenic 50.0%
CACTCTCAGGGCCCAAAATA+TGG - chr2_3:1985028-1985047 Msa0270730:intron 50.0%
ATCTGGACCGTTCTTCAACC+AGG - chr2_3:1985052-1985071 Msa0270730:intron 50.0%
GAGAGAGAGAGAGAGAGTTG+GGG + chr2_3:1985608-1985627 None:intergenic 50.0%
! AGAATGTTGTGTTGGCGGTG+TGG + chr2_3:1985669-1985688 None:intergenic 50.0%
!! TCGACTTCAGAAAGCGCTGA+CGG + chr2_3:1986312-1986331 None:intergenic 50.0%
CACCTAAAGCTTTGCTCTGG+AGG - chr2_3:1986539-1986558 Msa0270730:CDS 50.0%
TGCCTCCAGAGCAAAGCTTT+AGG + chr2_3:1986544-1986563 None:intergenic 50.0%
ATGAGCACTCAGGGCCTGTT+TGG + chr2_3:1983829-1983848 None:intergenic 55.0%
!! TGAGTTAACTTGCTGCCCGC+CGG - chr2_3:1984743-1984762 Msa0270730:CDS 55.0%
GAGAGAGAGAGAGTTGGGGT+AGG + chr2_3:1985604-1985623 None:intergenic 55.0%
AGTTCACCACGAGCTGTGTC+AGG + chr2_3:1985965-1985984 None:intergenic 55.0%
CATGCAGGAACCCGGTAAGA+TGG + chr2_3:1986217-1986236 None:intergenic 55.0%
!! CGACTTCAGAAAGCGCTGAC+GGG + chr2_3:1986311-1986330 None:intergenic 55.0%
GCTGTGTCAGGAGCCTTGAC+AGG + chr2_3:1985953-1985972 None:intergenic 60.0%
AAGGCTCCTGACACAGCTCG+TGG - chr2_3:1985956-1985975 Msa0270730:intron 60.0%
AAAACAGGCCAGCCCGGCGC+CGG + chr2_3:1984765-1984784 None:intergenic 70.0%
!! AACTTGCTGCCCGCCGGCGC+CGG - chr2_3:1984749-1984768 Msa0270730:CDS 75.0%
!!! GGCGCCGGGCTGGCCTGTTT+TGG - chr2_3:1984764-1984783 Msa0270730:CDS 75.0%
!! ACTTGCTGCCCGCCGGCGCC+GGG - chr2_3:1984750-1984769 Msa0270730:CDS 80.0%
!! ACAGGCCAGCCCGGCGCCGG+CGG + chr2_3:1984762-1984781 None:intergenic 85.0%
!!! CAGGCCAGCCCGGCGCCGGC+GGG + chr2_3:1984761-1984780 None:intergenic 90.0%
!! GCTGCCCGCCGGCGCCGGGC+TGG - chr2_3:1984754-1984773 Msa0270730:CDS 95.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 1983136 1986672 1983136 ID=Msa0270730;Name=Msa0270730
chr2_3 mRNA 1983136 1986672 1983136 ID=Msa0270730-mRNA-1;Parent=Msa0270730;Name=Msa0270730-mRNA-1;_AED=0.28;_eAED=0.28;_QI=34|0.75|1|1|1|1|5|435|207
chr2_3 exon 1983136 1983643 1983136 ID=Msa0270730-mRNA-1:exon:1009;Parent=Msa0270730-mRNA-1
chr2_3 exon 1983794 1983861 1983794 ID=Msa0270730-mRNA-1:exon:1008;Parent=Msa0270730-mRNA-1
chr2_3 exon 1984569 1984643 1984569 ID=Msa0270730-mRNA-1:exon:1007;Parent=Msa0270730-mRNA-1
chr2_3 exon 1984735 1984830 1984735 ID=Msa0270730-mRNA-1:exon:1006;Parent=Msa0270730-mRNA-1
chr2_3 exon 1986327 1986672 1986327 ID=Msa0270730-mRNA-1:exon:1005;Parent=Msa0270730-mRNA-1
chr2_3 five_prime_UTR 1986639 1986672 1986639 ID=Msa0270730-mRNA-1:five_prime_utr;Parent=Msa0270730-mRNA-1
chr2_3 CDS 1986327 1986638 1986327 ID=Msa0270730-mRNA-1:cds;Parent=Msa0270730-mRNA-1
chr2_3 CDS 1984735 1984830 1984735 ID=Msa0270730-mRNA-1:cds;Parent=Msa0270730-mRNA-1
chr2_3 CDS 1984569 1984643 1984569 ID=Msa0270730-mRNA-1:cds;Parent=Msa0270730-mRNA-1
chr2_3 CDS 1983794 1983861 1983794 ID=Msa0270730-mRNA-1:cds;Parent=Msa0270730-mRNA-1
chr2_3 CDS 1983571 1983643 1983571 ID=Msa0270730-mRNA-1:cds;Parent=Msa0270730-mRNA-1
chr2_3 three_prime_UTR 1983136 1983570 1983136 ID=Msa0270730-mRNA-1:three_prime_utr;Parent=Msa0270730-mRNA-1
Gene Sequence

>Msa0270730

ATGGCCTTATCTTCTACTTCACTCTTTTCACCTCTCAACACCACAAATCATTCACATCATAAACTACTCCTCCATTCACCACTATCTTCTTATTCTTATTCTTCTTCTCACTTTCTAATCACACCCCTCATCTACCACAATCACAACCTTGCTACTATCTCACAAAAATGGAGAACAAATGTTTCATTTTTCCCTGCAATCTTTAAGAAAGGCAAAGATGCAAACACCATTAAAGAAGAACTTCTTGATGCCATTGCATCACTTGATCGAGGAGCTGATGCCACTCCTGAAGACCAACAAAGGGTTGATCAGAGACCAAAGTTTTTGAGATCAGTAACAAATTATCAAGCAATCAATGCTGACACTCTCAGGGCCCAAAATATGGAATCTGGACCGTTCTTCAACCAGGTGACAGCAGATTTAACACCTCTAAATGCAAAGAAAGTGGCTGTGAAATTTGATACCTTCAAAATTGGAGGCTTAATACCTGTCAAGGCTCCTGACACAGCTCGTGGTGAACTTGAAATAACATATTTGGATGAAGAACTGAGGGTATCAAGAGGTGACAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCCATCTTACCGGGTTCCTGCATGA

Protein sequence

>Msa0270730

MALSSTSLFSPLNTTNHSHHKLLLHSPLSSYSYSSSHFLITPLIYHNHNLATISQKWRTNVSFFPAIFKKGKDANTIKEELLDAIASLDRGADATPEDQQRVDQRPKFLRSVTNYQAINADTLRAQNMESGPFFNQVTADLTPLNAKKVAVKFDTFKIGGLIPVKAPDTARGELEITYLDEELRVSRGDKGNLFILKMVDPSYRVPA*