AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550800 MtrunA17_Chr4g0035731 88.153 287 31 2 1 286 1 285 9.94e-159 443
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550800 AT2G21350.1 42.400 250 106 9 2 246 3 219 7.42e-42 144
Msa0550800 AT4G39040.2 62.500 112 42 0 146 257 153 264 2.10e-35 129
Msa0550800 AT4G39040.1 62.500 112 42 0 146 257 153 264 2.32e-35 129

Find 93 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCGGGATTGTCGATTTC+TGG 0.153329 4_1:+46349904 Msa0550800:three_prime_UTR
TTCAATTTCGTCTTCTTCTA+TGG 0.227363 4_1:-46347633 Msa0550790:intron
CGAACCCCGCCGTGATGATT+TGG 0.238788 4_1:-46349740 Msa0550790:intron
GACTAGGCCTGTATAAAATA+AGG 0.255349 4_1:-46349529 Msa0550790:intron
TGGGTCTTATGCACATAGTT+TGG 0.267978 4_1:+46347826 Msa0550800:CDS
CCTCTTTCTTCCTTCGTTGA+AGG 0.270970 4_1:+46347596 Msa0550800:CDS
GGGTCTTATGCACATAGTTT+GGG 0.294992 4_1:+46347827 Msa0550800:CDS
ATCATATAAACTAGAATTAC+AGG 0.314435 4_1:+46350158 Msa0550800:three_prime_UTR
TGATGCCGTCATCTCTGTTT+TGG 0.316497 4_1:-46347354 Msa0550790:intron
ATGAAGTCTTAAATTAAGTT+TGG 0.319122 4_1:+46349982 Msa0550800:three_prime_UTR
AACGAAGACTACTAATAAAC+AGG 0.325327 4_1:+46349618 Msa0550800:CDS
TAAGAAGTTCATTAGCTTCA+AGG 0.331752 4_1:-46347922 Msa0550790:intron
TGAAGCTAATGAACTTCTTA+AGG 0.332588 4_1:+46347925 Msa0550800:CDS
AAAGAGTCTCATTCTTGTTC+AGG 0.360127 4_1:-46349830 Msa0550790:intron
GAACCCCGCCGTGATGATTT+GGG 0.368695 4_1:-46349739 Msa0550790:intron
GAGAGAAGAGAGATTGAAAC+TGG 0.370203 4_1:+46347766 Msa0550800:CDS
TTTGGATTGTGAAATGAAAC+TGG 0.376256 4_1:-46347336 Msa0550790:intron
TGGAGAATGTTGCTTCCATT+TGG 0.384947 4_1:+46350109 Msa0550800:three_prime_UTR
ACACAATTGGTGGGTAAGTC+TGG 0.392170 4_1:+46347863 Msa0550800:CDS
TACTGGCAGATGAGAATTCC+GGG 0.399607 4_1:+46349889 Msa0550800:three_prime_UTR
GTACTGGCAGATGAGAATTC+CGG 0.402233 4_1:+46349888 Msa0550800:three_prime_UTR
GGAAGAAAGAGGAGGGATGT+AGG 0.418907 4_1:-46347585 Msa0550790:intron
AAATAAGGGTTCGACCAATC+TGG 0.423091 4_1:-46349514 Msa0550790:intron
CATGGAAAGCGAGAGGAAAT+AGG 0.424887 4_1:+46349764 Msa0550800:CDS
CCAGTACAATGTCCAGTCCT+TGG 0.439188 4_1:-46349872 Msa0550790:intron
ACTGAAAGCAGTAATAAGAT+TGG 0.440308 4_1:-46347894 Msa0550790:intron
TCAGTGACCGTTGGCCAGAT+TGG 0.443479 4_1:+46349500 Msa0550800:CDS
CGAAGGGTAATATTGGAAGA+AGG 0.461644 4_1:-46347479 Msa0550790:intron
CTATTTCCTCTCGCTTTCCA+TGG 0.468374 4_1:-46349763 Msa0550790:intron
CAGTACAATGTCCAGTCCTT+GGG 0.469095 4_1:-46349871 Msa0550790:intron
GGAACACTTGTATGAGGTTG+TGG 0.470746 4_1:+46349932 Msa0550800:three_prime_UTR
TCTTCTCTCTTTGTCACCAA+TGG 0.477641 4_1:-46347752 Msa0550790:intron
ATTAAGTTTGGTTTATTCTG+TGG 0.478533 4_1:+46349994 Msa0550800:three_prime_UTR
AAGACTTCATCCTCTAGCTC+TGG 0.479939 4_1:-46349969 Msa0550790:intron
GCCTAGTCTCTCCAAATTGA+AGG 0.481817 4_1:+46349544 Msa0550800:CDS
GGATAAGAAATATGGTGAAC+GGG 0.482122 4_1:-46347534 Msa0550790:intron
CTGAAAGCAGTAATAAGATT+GGG 0.482185 4_1:-46347893 Msa0550790:intron
ACTAGGCCTGTATAAAATAA+GGG 0.483984 4_1:-46349528 Msa0550790:intron
CTTTCCTTCACACTCAAACT+CGG 0.486915 4_1:-46347794 Msa0550790:intron
AAAATACACGGGAGTTGTCC+AGG 0.506780 4_1:+46349434 Msa0550800:CDS
AAGAAAAGAAGAAACAAGTT+CGG 0.507063 4_1:+46349570 Msa0550800:CDS
AGAAGATGTTGTGAAGCAGT+TGG 0.507699 4_1:+46349463 Msa0550800:CDS
ACTCTCATCCACCATCACTT+TGG 0.511098 4_1:-46347714 Msa0550790:intron
GATTGTCGATTTCTGGATCA+AGG 0.513618 4_1:+46349911 Msa0550800:three_prime_UTR
AAGCAGTTGGAAGAAGCAAC+TGG 0.518116 4_1:+46349476 Msa0550800:CDS
TTTGAGAAATGAAATGAAAG+AGG 0.521063 4_1:-46347444 Msa0550790:intron
AGAACCCAAATCATCACGGC+GGG 0.527975 4_1:+46349735 Msa0550800:CDS
AAAGCTTAGCACACAATTGG+TGG 0.528041 4_1:+46347853 Msa0550800:CDS
CCAAGGACTGGACATTGTAC+TGG 0.532343 4_1:+46349872 Msa0550800:three_prime_UTR
GTGAAGGAAAGGAAAGAACT+TGG 0.535787 4_1:+46347806 Msa0550800:CDS
AATGTCCAGTCCTTGGGTAT+CGG 0.547091 4_1:-46349865 Msa0550790:intron
GATCAAGGAACACTTGTATG+AGG 0.553111 4_1:+46349926 Msa0550800:three_prime_UTR
TGAAACTACATCGTCGCCAT+TGG 0.556171 4_1:+46347736 Msa0550800:CDS
TTGGAAGAAGGAATAAAGAG+AGG 0.559901 4_1:-46347467 Msa0550790:intron
ACGGTAACGGCGGTTGTGAA+CGG 0.569654 4_1:-46347409 Msa0550790:intron
TGGATAAGAAATATGGTGAA+CGG 0.571212 4_1:-46347535 Msa0550790:intron
GAAGATGACGGTGACGGTAA+CGG 0.572355 4_1:-46347422 Msa0550790:intron
TGAAGTTGAACCTTCAACGA+AGG 0.575257 4_1:-46347606 Msa0550790:intron
ACATACCGATACCCAAGGAC+TGG 0.576045 4_1:+46349860 Msa0550800:three_prime_UTR
CGAGTTTGAGTGTGAAGGAA+AGG 0.578460 4_1:+46347795 Msa0550800:CDS
CATCACGGCGGGGTTCGCCA+TGG 0.588212 4_1:+46349746 Msa0550800:CDS
GATCCAGAAATCGACAATCC+CGG 0.588392 4_1:-46349907 Msa0550790:intron
GGTCTTATGCACATAGTTTG+GGG 0.589830 4_1:+46347828 Msa0550800:CDS
CCTTCAACGAAGGAAGAAAG+AGG 0.590228 4_1:-46347596 Msa0550790:intron
ACAACATCTTCTAACTCACC+TGG 0.594667 4_1:-46349452 Msa0550790:intron
GAGAACGACGAGGAGGTGAG+AGG 0.594830 4_1:-46347387 Msa0550790:intron
CATTTACAGATTAAAATACA+CGG 0.607337 4_1:+46349422 Msa0550800:intron
GTTTCGTCGAAGGATTGTTG+TGG 0.608084 4_1:+46349800 Msa0550800:three_prime_UTR
ACAATCCAAAACAGAGATGA+CGG 0.613980 4_1:+46347349 Msa0550800:exon
TAAACACGTAGTTTCGTCGA+AGG 0.615826 4_1:+46349790 Msa0550800:exon
TTATGAAGATACCAAAGTGA+TGG 0.617568 4_1:+46347703 Msa0550800:CDS
TGAAGATACCAAAGTGATGG+TGG 0.621891 4_1:+46347706 Msa0550800:CDS
ACCTTCAATTTGGAGAGACT+AGG 0.627384 4_1:-46349545 Msa0550790:intron
AAGCTTAGCACACAATTGGT+GGG 0.629215 4_1:+46347854 Msa0550800:CDS
GCAACTGGTTCAGTGACCGT+TGG 0.632856 4_1:+46349491 Msa0550800:CDS
CAACGAAGGAAGAAAGAGGA+GGG 0.633433 4_1:-46347592 Msa0550790:intron
ATTTACAGATTAAAATACAC+GGG 0.633460 4_1:+46349423 Msa0550800:intron
TGAAGGAAAGGAAAGAACTT+GGG 0.637854 4_1:+46347807 Msa0550800:CDS
AAAGAGGAAGATGACGGTGA+CGG 0.641972 4_1:-46347428 Msa0550790:intron
TCAACGAAGGAAGAAAGAGG+AGG 0.642176 4_1:-46347593 Msa0550790:intron
TGCTTTGTGACCAGAGCTAG+AGG 0.644427 4_1:+46349959 Msa0550800:three_prime_UTR
GAAATGAAAGAGGAAGATGA+CGG 0.644772 4_1:-46347434 Msa0550790:intron
AACAAGAACCCAAATCATCA+CGG 0.648444 4_1:+46349731 Msa0550800:CDS
ACGAAGACTACTAATAAACA+GGG 0.650052 4_1:+46349619 Msa0550800:CDS
GGTTCGACCAATCTGGCCAA+CGG 0.657872 4_1:-46349507 Msa0550790:intron
GGTTCGCCATGGAAAGCGAG+AGG 0.664200 4_1:+46349757 Msa0550800:CDS
TGCGTACATACCGATACCCA+AGG 0.670314 4_1:+46349855 Msa0550800:three_prime_UTR
GAACCCAAATCATCACGGCG+GGG 0.716097 4_1:+46349736 Msa0550800:CDS
AGTGCCGAGTTTGAGTGTGA+AGG 0.720831 4_1:+46347790 Msa0550800:CDS
GTGAACGGAGAACGACGAGG+AGG 0.727474 4_1:-46347394 Msa0550790:intron
GATGACGGTGACGGTAACGG+CGG 0.733207 4_1:-46347419 Msa0550790:intron
AAGAACCCAAATCATCACGG+CGG 0.750849 4_1:+46349734 Msa0550800:CDS
GTTGTGAACGGAGAACGACG+AGG 0.796015 4_1:-46347397 Msa0550790:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTATTGTTTGATATATTT+TGG + chr4_1:46348018-46348037 Msa0550800:intron 15.0%
!!! TTATAATCATCTTTATTTGA+AGG + chr4_1:46349121-46349140 Msa0550800:intron 15.0%
!!! ATTAAATTGCAATTTTTTCA+TGG + chr4_1:46350089-46350108 Msa0550800:three_prime_UTR 15.0%
!!! TGATATATTTTGGTAATACA+TGG + chr4_1:46348028-46348047 Msa0550800:intron 20.0%
!!! GATATATTTTGGTAATACAT+GGG + chr4_1:46348029-46348048 Msa0550800:intron 20.0%
!! TTGTCATTGATGTTAATTAT+TGG + chr4_1:46348213-46348232 Msa0550800:intron 20.0%
!! ATAGATACTGAGAATAATTT+AGG - chr4_1:46348657-46348676 Msa0550790:intron 20.0%
!!! ATCAATATATAGACCATTTT+AGG - chr4_1:46348977-46348996 Msa0550790:intron 20.0%
!!! ATTAATTTGTACTTGCAATT+TGG + chr4_1:46349395-46349414 Msa0550800:intron 20.0%
!! CATTTACAGATTAAAATACA+CGG + chr4_1:46349422-46349441 Msa0550800:intron 20.0%
!! ATTTACAGATTAAAATACAC+GGG + chr4_1:46349423-46349442 Msa0550800:intron 20.0%
!! ATGAAGTCTTAAATTAAGTT+TGG + chr4_1:46349982-46350001 Msa0550800:three_prime_UTR 20.0%
!! ATCATATAAACTAGAATTAC+AGG + chr4_1:46350158-46350177 Msa0550800:three_prime_UTR 20.0%
! TTTGAGAAATGAAATGAAAG+AGG - chr4_1:46347447-46347466 Msa0550790:intron 25.0%
!! AAATTTTCGAAGGGTAATAT+TGG - chr4_1:46347489-46347508 Msa0550790:intron 25.0%
! TAATGAACTTCTTAAGGTAA+TGG + chr4_1:46347931-46347950 Msa0550800:intron 25.0%
!!! AATGTGTTATTGTTTTCATG+TGG + chr4_1:46348129-46348148 Msa0550800:intron 25.0%
! AATTACAGATGCTAAACATA+CGG - chr4_1:46348165-46348184 Msa0550790:intron 25.0%
! AAAGTGAATGCAAATTCATT+AGG + chr4_1:46348269-46348288 Msa0550800:intron 25.0%
! AATAGCAGATTGTTTCAATT+CGG + chr4_1:46348325-46348344 Msa0550800:intron 25.0%
! ACAAAATTATTGTCAACTAG+TGG - chr4_1:46348381-46348400 Msa0550790:intron 25.0%
! TTGTTAAATACCATCTATAG+TGG - chr4_1:46348470-46348489 Msa0550790:intron 25.0%
! TAGATGGTATTTAACAACAT+TGG + chr4_1:46348473-46348492 Msa0550800:intron 25.0%
! AGATGGTATTTAACAACATT+GGG + chr4_1:46348474-46348493 Msa0550800:intron 25.0%
!! GATTTAGCAAGAGTATATTT+AGG + chr4_1:46348532-46348551 Msa0550800:intron 25.0%
! CTGAGAATAATTTAGGAAAA+TGG - chr4_1:46348650-46348669 Msa0550790:intron 25.0%
!! ACTTCAGAGTGTAATTTTTA+TGG + chr4_1:46349095-46349114 Msa0550800:intron 25.0%
!! TAATCATCTTTATTTGAAGG+AGG + chr4_1:46349124-46349143 Msa0550800:intron 25.0%
!! AATCATCTTTATTTGAAGGA+GGG + chr4_1:46349125-46349144 Msa0550800:intron 25.0%
! ACAAAGCAATATACTTTCAT+TGG + chr4_1:46349254-46349273 Msa0550800:intron 25.0%
!!! ACTTGTGCATTTTAATGATT+AGG - chr4_1:46349347-46349366 Msa0550790:intron 25.0%
! AAGAAAAGAAGAAACAAGTT+CGG + chr4_1:46349570-46349589 Msa0550800:CDS 25.0%
!! ATTAAGTTTGGTTTATTCTG+TGG + chr4_1:46349994-46350013 Msa0550800:three_prime_UTR 25.0%
TTTGGATTGTGAAATGAAAC+TGG - chr4_1:46347339-46347358 Msa0550790:intron 30.0%
TGGATAAGAAATATGGTGAA+CGG - chr4_1:46347538-46347557 Msa0550790:intron 30.0%
TTCAATTTCGTCTTCTTCTA+TGG - chr4_1:46347636-46347655 Msa0550790:intron 30.0%
TTATGAAGATACCAAAGTGA+TGG + chr4_1:46347703-46347722 Msa0550800:CDS 30.0%
CTGAAAGCAGTAATAAGATT+GGG - chr4_1:46347896-46347915 Msa0550790:intron 30.0%
ACTGAAAGCAGTAATAAGAT+TGG - chr4_1:46347897-46347916 Msa0550790:intron 30.0%
! TAAGAAGTTCATTAGCTTCA+AGG - chr4_1:46347925-46347944 Msa0550790:intron 30.0%
TGAAGCTAATGAACTTCTTA+AGG + chr4_1:46347925-46347944 Msa0550800:CDS 30.0%
! CTGAAAAATGTCTCTGTTTT+CGG + chr4_1:46347986-46348005 Msa0550800:intron 30.0%
CATTGGGCAATACAAATAAA+TGG + chr4_1:46348490-46348509 Msa0550800:intron 30.0%
CAATACAAATAAATGGCCTT+GGG + chr4_1:46348497-46348516 Msa0550800:intron 30.0%
! AATACAAATAAATGGCCTTG+GGG + chr4_1:46348498-46348517 Msa0550800:intron 30.0%
AGAGTATATTTAGGAACTAG+TGG + chr4_1:46348541-46348560 Msa0550800:intron 30.0%
TATAACTTCAAGTGTCATGT+TGG - chr4_1:46348615-46348634 Msa0550790:intron 30.0%
TGTAAAACGATTGTTTGAGT+TGG + chr4_1:46348732-46348751 Msa0550800:intron 30.0%
! TGGTCTATATATTGATTAGC+TGG + chr4_1:46348981-46349000 Msa0550800:intron 30.0%
! GGTCTATATATTGATTAGCT+GGG + chr4_1:46348982-46349001 Msa0550800:intron 30.0%
! ATCATCTTTATTTGAAGGAG+GGG + chr4_1:46349126-46349145 Msa0550800:intron 30.0%
TACTGTAAAACTGTTCTACA+CGG + chr4_1:46349281-46349300 Msa0550800:intron 30.0%
!! TGTGCATTTTAATGATTAGG+AGG - chr4_1:46349344-46349363 Msa0550790:intron 30.0%
ACTAGGCCTGTATAAAATAA+GGG - chr4_1:46349531-46349550 Msa0550790:intron 30.0%
! CTTTTCTTCTACCTTCAATT+TGG - chr4_1:46349558-46349577 Msa0550790:intron 30.0%
AACGAAGACTACTAATAAAC+AGG + chr4_1:46349618-46349637 Msa0550800:CDS 30.0%
ACGAAGACTACTAATAAACA+GGG + chr4_1:46349619-46349638 Msa0550800:CDS 30.0%
GAAGAGATCAAAATAATTCG+AGG - chr4_1:46349671-46349690 Msa0550790:intron 30.0%
!! TGCTACTATTTTTCTCCAAA+TGG - chr4_1:46350127-46350146 Msa0550790:intron 30.0%
ACAATCCAAAACAGAGATGA+CGG + chr4_1:46347349-46347368 Msa0550800:exon 35.0%
GAAATGAAAGAGGAAGATGA+CGG - chr4_1:46347437-46347456 Msa0550790:intron 35.0%
TTGGAAGAAGGAATAAAGAG+AGG - chr4_1:46347470-46347489 Msa0550790:intron 35.0%
!! AAATATGGTGAACGGGTTTT+TGG - chr4_1:46347530-46347549 Msa0550790:intron 35.0%
GGATAAGAAATATGGTGAAC+GGG - chr4_1:46347537-46347556 Msa0550790:intron 35.0%
TGAAGGAAAGGAAAGAACTT+GGG + chr4_1:46347807-46347826 Msa0550800:CDS 35.0%
GAAAAAGCTTAGCACACAAT+TGG + chr4_1:46347850-46347869 Msa0550800:CDS 35.0%
! AAATGTCTCTGTTTTCGGTT+TGG + chr4_1:46347991-46348010 Msa0550800:intron 35.0%
!! TTTTGGTAATACATGGGAAG+AGG + chr4_1:46348035-46348054 Msa0550800:intron 35.0%
GTAGGTGTATGTGTTCTTTA+AGG + chr4_1:46348069-46348088 Msa0550800:intron 35.0%
GCAATACAAATAAATGGCCT+TGG + chr4_1:46348496-46348515 Msa0550800:intron 35.0%
! ATACAAATAAATGGCCTTGG+GGG + chr4_1:46348499-46348518 Msa0550800:intron 35.0%
ACCGACACTTTAGATTGAAA+GGG + chr4_1:46348579-46348598 Msa0550800:intron 35.0%
! ACCCTTTCAATCTAAAGTGT+CGG - chr4_1:46348583-46348602 Msa0550790:intron 35.0%
ACATACGCAATCATCAAACA+AGG - chr4_1:46348681-46348700 Msa0550790:intron 35.0%
! CGTTTTACATACATCAAGTC+TGG - chr4_1:46348721-46348740 Msa0550790:intron 35.0%
!! AACGATTGTTTGAGTTGGTT+TGG + chr4_1:46348737-46348756 Msa0550800:intron 35.0%
CATGCAATCTTATTCTAGTG+TGG + chr4_1:46348847-46348866 Msa0550800:intron 35.0%
ATCTTATTCTAGTGTGGAAG+TGG + chr4_1:46348853-46348872 Msa0550800:intron 35.0%
! CTTAAGTGTTGCACCTAAAA+TGG + chr4_1:46348961-46348980 Msa0550800:intron 35.0%
TGCGTGATTCAATTATGTCT+CGG + chr4_1:46349055-46349074 Msa0550800:intron 35.0%
CACGATGAAAAGGATATGTA+TGG - chr4_1:46349308-46349327 Msa0550790:intron 35.0%
AGAGAAAACACACGATGAAA+AGG - chr4_1:46349318-46349337 Msa0550790:intron 35.0%
AGATGCAAAGATTGTGAACA+AGG - chr4_1:46349374-46349393 Msa0550790:intron 35.0%
!!! GTCGAACCCTTATTTTATAC+AGG + chr4_1:46349522-46349541 Msa0550800:CDS 35.0%
GACTAGGCCTGTATAAAATA+AGG - chr4_1:46349532-46349551 Msa0550790:intron 35.0%
!! ACAAGTTCGGAAACTTTTTC+TGG + chr4_1:46349583-46349602 Msa0550800:CDS 35.0%
AGACTACTAATAAACAGGGT+AGG + chr4_1:46349623-46349642 Msa0550800:intron 35.0%
CTAATAAACAGGGTAGGTTA+TGG + chr4_1:46349629-46349648 Msa0550800:intron 35.0%
CAAGAACATTAGTGAAGCAT+AGG - chr4_1:46349693-46349712 Msa0550790:intron 35.0%
AACAAGAACCCAAATCATCA+CGG + chr4_1:46349731-46349750 Msa0550800:CDS 35.0%
AAAGAGTCTCATTCTTGTTC+AGG - chr4_1:46349833-46349852 Msa0550790:intron 35.0%
CGAAGGGTAATATTGGAAGA+AGG - chr4_1:46347482-46347501 Msa0550790:intron 40.0%
! GTGAGGGTGAAATTTTCGAA+GGG - chr4_1:46347498-46347517 Msa0550790:intron 40.0%
! AAAAAGCGCGGGAAGAAAAA+GGG - chr4_1:46347565-46347584 Msa0550790:intron 40.0%
TGAAGTTGAACCTTCAACGA+AGG - chr4_1:46347609-46347628 Msa0550790:intron 40.0%
TGAAGATACCAAAGTGATGG+TGG + chr4_1:46347706-46347725 Msa0550800:CDS 40.0%
TCTTCTCTCTTTGTCACCAA+TGG - chr4_1:46347755-46347774 Msa0550790:intron 40.0%
GAGAGAAGAGAGATTGAAAC+TGG + chr4_1:46347766-46347785 Msa0550800:CDS 40.0%
CTTTCCTTCACACTCAAACT+CGG - chr4_1:46347797-46347816 Msa0550790:intron 40.0%
GTGAAGGAAAGGAAAGAACT+TGG + chr4_1:46347806-46347825 Msa0550800:CDS 40.0%
! TGGGTCTTATGCACATAGTT+TGG + chr4_1:46347826-46347845 Msa0550800:CDS 40.0%
! GGGTCTTATGCACATAGTTT+GGG + chr4_1:46347827-46347846 Msa0550800:CDS 40.0%
! GGTCTTATGCACATAGTTTG+GGG + chr4_1:46347828-46347847 Msa0550800:CDS 40.0%
AAAGCTTAGCACACAATTGG+TGG + chr4_1:46347853-46347872 Msa0550800:CDS 40.0%
AAGCTTAGCACACAATTGGT+GGG + chr4_1:46347854-46347873 Msa0550800:CDS 40.0%
TACATGGGAAGAGGAATTTG+AGG + chr4_1:46348044-46348063 Msa0550800:intron 40.0%
AATGCCAGAGTTGTCAATTG+TGG + chr4_1:46348293-46348312 Msa0550800:intron 40.0%
CTATCCACAATTGACAACTC+TGG - chr4_1:46348300-46348319 Msa0550790:intron 40.0%
TTGTCAACTAGTGGTTACAG+TGG - chr4_1:46348372-46348391 Msa0550790:intron 40.0%
!! GTCCAAATTCCGATTTGCTA+CGG + chr4_1:46348434-46348453 Msa0550800:intron 40.0%
AATCCAACAAAATACCCCCA+AGG - chr4_1:46348516-46348535 Msa0550790:intron 40.0%
CACCGACACTTTAGATTGAA+AGG + chr4_1:46348578-46348597 Msa0550800:intron 40.0%
TCAAGTGTCATGTTGGACAT+CGG - chr4_1:46348608-46348627 Msa0550790:intron 40.0%
TGCAATAGTCTTTGCAGTCT+TGG + chr4_1:46348760-46348779 Msa0550800:intron 40.0%
!!! TCTTGGTGCTTTTTGATGGT+TGG + chr4_1:46348777-46348796 Msa0550800:intron 40.0%
TGTGTTTGACAACTTTCCGT+TGG + chr4_1:46348901-46348920 Msa0550800:intron 40.0%
GCGTGATTCAATTATGTCTC+GGG + chr4_1:46349056-46349075 Msa0550800:intron 40.0%
CGTGATTCAATTATGTCTCG+GGG + chr4_1:46349057-46349076 Msa0550800:intron 40.0%
GTGATTCAATTATGTCTCGG+GGG + chr4_1:46349058-46349077 Msa0550800:intron 40.0%
ACAACATCTTCTAACTCACC+TGG - chr4_1:46349455-46349474 Msa0550790:intron 40.0%
AGAAGATGTTGTGAAGCAGT+TGG + chr4_1:46349463-46349482 Msa0550800:CDS 40.0%
AAATAAGGGTTCGACCAATC+TGG - chr4_1:46349517-46349536 Msa0550790:intron 40.0%
ACCTTCAATTTGGAGAGACT+AGG - chr4_1:46349548-46349567 Msa0550790:intron 40.0%
TTCTTGTGAAACTGCAGAGT+AGG + chr4_1:46349707-46349726 Msa0550800:intron 40.0%
TCTTGTGAAACTGCAGAGTA+GGG + chr4_1:46349708-46349727 Msa0550800:intron 40.0%
TAAACACGTAGTTTCGTCGA+AGG + chr4_1:46349790-46349809 Msa0550800:exon 40.0%
!! GATTGTCGATTTCTGGATCA+AGG + chr4_1:46349911-46349930 Msa0550800:three_prime_UTR 40.0%
GATCAAGGAACACTTGTATG+AGG + chr4_1:46349926-46349945 Msa0550800:three_prime_UTR 40.0%
! TGGAGAATGTTGCTTCCATT+TGG + chr4_1:46350109-46350128 Msa0550800:three_prime_UTR 40.0%
! TGATGCCGTCATCTCTGTTT+TGG - chr4_1:46347357-46347376 Msa0550790:intron 45.0%
! AAAGAGGAAGATGACGGTGA+CGG - chr4_1:46347431-46347450 Msa0550790:intron 45.0%
! GGTGAGGGTGAAATTTTCGA+AGG - chr4_1:46347499-46347518 Msa0550790:intron 45.0%
!! TTTTTGGAAGGGATGGGTGA+GGG - chr4_1:46347514-46347533 Msa0550790:intron 45.0%
!! AACGGGTTTTTGGAAGGGAT+GGG - chr4_1:46347520-46347539 Msa0550790:intron 45.0%
!! TGGTGAACGGGTTTTTGGAA+GGG - chr4_1:46347525-46347544 Msa0550790:intron 45.0%
!! ATGGTGAACGGGTTTTTGGA+AGG - chr4_1:46347526-46347545 Msa0550790:intron 45.0%
! GGGGGTGTGGATAAGAAATA+TGG - chr4_1:46347545-46347564 Msa0550790:intron 45.0%
! AAAAGCGCGGGAAGAAAAAG+GGG - chr4_1:46347564-46347583 Msa0550790:intron 45.0%
! GAAAAAGCGCGGGAAGAAAA+AGG - chr4_1:46347566-46347585 Msa0550790:intron 45.0%
CAACGAAGGAAGAAAGAGGA+GGG - chr4_1:46347595-46347614 Msa0550790:intron 45.0%
TCAACGAAGGAAGAAAGAGG+AGG - chr4_1:46347596-46347615 Msa0550790:intron 45.0%
CCTTCAACGAAGGAAGAAAG+AGG - chr4_1:46347599-46347618 Msa0550790:intron 45.0%
CCTCTTTCTTCCTTCGTTGA+AGG + chr4_1:46347596-46347615 Msa0550800:CDS 45.0%
ACTCTCATCCACCATCACTT+TGG - chr4_1:46347717-46347736 Msa0550790:intron 45.0%
TGAAACTACATCGTCGCCAT+TGG + chr4_1:46347736-46347755 Msa0550800:CDS 45.0%
CGAGTTTGAGTGTGAAGGAA+AGG + chr4_1:46347795-46347814 Msa0550800:CDS 45.0%
! ACACAATTGGTGGGTAAGTC+TGG + chr4_1:46347863-46347882 Msa0550800:CDS 45.0%
ATGGGAAGAGGAATTTGAGG+TGG + chr4_1:46348047-46348066 Msa0550800:intron 45.0%
! GAAGAGGAATTTGAGGTGGT+AGG + chr4_1:46348051-46348070 Msa0550800:intron 45.0%
CACCGTAGCAAATCGGAATT+TGG - chr4_1:46348439-46348458 Msa0550790:intron 45.0%
!! CAAATTCCGATTTGCTACGG+TGG + chr4_1:46348437-46348456 Msa0550800:intron 45.0%
!!! GCAGTCTTGGTGCTTTTTGA+TGG + chr4_1:46348773-46348792 Msa0550800:intron 45.0%
AAAATACACGGGAGTTGTCC+AGG + chr4_1:46349434-46349453 Msa0550800:CDS 45.0%
AAGCAGTTGGAAGAAGCAAC+TGG + chr4_1:46349476-46349495 Msa0550800:CDS 45.0%
GCCTAGTCTCTCCAAATTGA+AGG + chr4_1:46349544-46349563 Msa0550800:CDS 45.0%
AAGAACCCAAATCATCACGG+CGG + chr4_1:46349734-46349753 Msa0550800:CDS 45.0%
CTATTTCCTCTCGCTTTCCA+TGG - chr4_1:46349766-46349785 Msa0550790:intron 45.0%
CATGGAAAGCGAGAGGAAAT+AGG + chr4_1:46349764-46349783 Msa0550800:CDS 45.0%
GTTTCGTCGAAGGATTGTTG+TGG + chr4_1:46349800-46349819 Msa0550800:three_prime_UTR 45.0%
AATGTCCAGTCCTTGGGTAT+CGG - chr4_1:46349868-46349887 Msa0550790:intron 45.0%
CAGTACAATGTCCAGTCCTT+GGG - chr4_1:46349874-46349893 Msa0550790:intron 45.0%
! GTACTGGCAGATGAGAATTC+CGG + chr4_1:46349888-46349907 Msa0550800:three_prime_UTR 45.0%
TACTGGCAGATGAGAATTCC+GGG + chr4_1:46349889-46349908 Msa0550800:three_prime_UTR 45.0%
!! ATTCCGGGATTGTCGATTTC+TGG + chr4_1:46349904-46349923 Msa0550800:three_prime_UTR 45.0%
GATCCAGAAATCGACAATCC+CGG - chr4_1:46349910-46349929 Msa0550790:intron 45.0%
GGAACACTTGTATGAGGTTG+TGG + chr4_1:46349932-46349951 Msa0550800:three_prime_UTR 45.0%
! AAGACTTCATCCTCTAGCTC+TGG - chr4_1:46349972-46349991 Msa0550790:intron 45.0%
! GAAGATGACGGTGACGGTAA+CGG - chr4_1:46347425-46347444 Msa0550790:intron 50.0%
!! GTTTTTGGAAGGGATGGGTG+AGG - chr4_1:46347515-46347534 Msa0550790:intron 50.0%
!! GAACGGGTTTTTGGAAGGGA+TGG - chr4_1:46347521-46347540 Msa0550790:intron 50.0%
AAAGCGCGGGAAGAAAAAGG+GGG - chr4_1:46347563-46347582 Msa0550790:intron 50.0%
! AGGGATGTAGGAAAAAGCGC+GGG - chr4_1:46347576-46347595 Msa0550790:intron 50.0%
GAGGGATGTAGGAAAAAGCG+CGG - chr4_1:46347577-46347596 Msa0550790:intron 50.0%
GGAAGAAAGAGGAGGGATGT+AGG - chr4_1:46347588-46347607 Msa0550790:intron 50.0%
! AGTGCCGAGTTTGAGTGTGA+AGG + chr4_1:46347790-46347809 Msa0550800:CDS 50.0%
!!! TGGCCTTGGGGGTATTTTGT+TGG + chr4_1:46348510-46348529 Msa0550800:intron 50.0%
GTGGCATTGCATGCAAAGCA+TGG + chr4_1:46348872-46348891 Msa0550800:intron 50.0%
ACAGTCAAACCAGTGGCCAA+CGG - chr4_1:46348920-46348939 Msa0550790:intron 50.0%
TCCAGTGACAGTCAAACCAG+TGG - chr4_1:46348927-46348946 Msa0550790:intron 50.0%
AGAACCCAAATCATCACGGC+GGG + chr4_1:46349735-46349754 Msa0550800:CDS 50.0%
TGCGTACATACCGATACCCA+AGG + chr4_1:46349855-46349874 Msa0550800:three_prime_UTR 50.0%
ACATACCGATACCCAAGGAC+TGG + chr4_1:46349860-46349879 Msa0550800:three_prime_UTR 50.0%
CCAGTACAATGTCCAGTCCT+TGG - chr4_1:46349875-46349894 Msa0550790:intron 50.0%
CCAAGGACTGGACATTGTAC+TGG + chr4_1:46349872-46349891 Msa0550800:three_prime_UTR 50.0%
TGCTTTGTGACCAGAGCTAG+AGG + chr4_1:46349959-46349978 Msa0550800:three_prime_UTR 50.0%
GTTGTGAACGGAGAACGACG+AGG - chr4_1:46347400-46347419 Msa0550790:intron 55.0%
! ACGGTAACGGCGGTTGTGAA+CGG - chr4_1:46347412-46347431 Msa0550790:intron 55.0%
!! TCCGATTTGCTACGGTGGTC+TGG + chr4_1:46348442-46348461 Msa0550800:intron 55.0%
GCCAGACCACCGTAGCAAAT+CGG - chr4_1:46348446-46348465 Msa0550790:intron 55.0%
TGGTCTGGCGCCACTATAGA+TGG + chr4_1:46348457-46348476 Msa0550800:intron 55.0%
TTGCAGCAGCTGCGTGACAA+TGG - chr4_1:46348806-46348825 Msa0550790:intron 55.0%
GACAACTTTCCGTTGGCCAC+TGG + chr4_1:46348908-46348927 Msa0550800:intron 55.0%
!! GCCACTGGTTTGACTGTCAC+TGG + chr4_1:46348923-46348942 Msa0550800:intron 55.0%
! GCAACTGGTTCAGTGACCGT+TGG + chr4_1:46349491-46349510 Msa0550800:CDS 55.0%
TCAGTGACCGTTGGCCAGAT+TGG + chr4_1:46349500-46349519 Msa0550800:CDS 55.0%
GGTTCGACCAATCTGGCCAA+CGG - chr4_1:46349510-46349529 Msa0550790:intron 55.0%
GAACCCAAATCATCACGGCG+GGG + chr4_1:46349736-46349755 Msa0550800:CDS 55.0%
GAACCCCGCCGTGATGATTT+GGG - chr4_1:46349742-46349761 Msa0550790:intron 55.0%
GAGAACGACGAGGAGGTGAG+AGG - chr4_1:46347390-46347409 Msa0550790:intron 60.0%
GTGAACGGAGAACGACGAGG+AGG - chr4_1:46347397-46347416 Msa0550790:intron 60.0%
! GATGACGGTGACGGTAACGG+CGG - chr4_1:46347422-46347441 Msa0550790:intron 60.0%
GCGGGAAGAAAAAGGGGGTG+TGG - chr4_1:46347558-46347577 Msa0550790:intron 60.0%
GTCACGCAGCTGCTGCAAAG+TGG + chr4_1:46348808-46348827 Msa0550800:intron 60.0%
CGAACCCCGCCGTGATGATT+TGG - chr4_1:46349743-46349762 Msa0550790:intron 60.0%
GGTTCGCCATGGAAAGCGAG+AGG + chr4_1:46349757-46349776 Msa0550800:CDS 60.0%
CATCACGGCGGGGTTCGCCA+TGG + chr4_1:46349746-46349765 Msa0550800:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46347329 46350185 46347329 ID=Msa0550800;Name=Msa0550800
chr4_1 mRNA 46347329 46350185 46347329 ID=Msa0550800-mRNA-1;Parent=Msa0550800;Name=Msa0550800-mRNA-1;_AED=0.01;_eAED=0.01;_QI=36|1|1|1|1|1|3|393|286
chr4_1 exon 46347329 46347946 46347329 ID=Msa0550800-mRNA-1:exon:12398;Parent=Msa0550800-mRNA-1
chr4_1 exon 46349431 46349640 46349431 ID=Msa0550800-mRNA-1:exon:12399;Parent=Msa0550800-mRNA-1
chr4_1 exon 46349724 46350185 46349724 ID=Msa0550800-mRNA-1:exon:12400;Parent=Msa0550800-mRNA-1
chr4_1 five_prime_UTR 46347329 46347364 46347329 ID=Msa0550800-mRNA-1:five_prime_utr;Parent=Msa0550800-mRNA-1
chr4_1 CDS 46347365 46347946 46347365 ID=Msa0550800-mRNA-1:cds;Parent=Msa0550800-mRNA-1
chr4_1 CDS 46349431 46349640 46349431 ID=Msa0550800-mRNA-1:cds;Parent=Msa0550800-mRNA-1
chr4_1 CDS 46349724 46349792 46349724 ID=Msa0550800-mRNA-1:cds;Parent=Msa0550800-mRNA-1
chr4_1 three_prime_UTR 46349793 46350185 46349793 ID=Msa0550800-mRNA-1:three_prime_utr;Parent=Msa0550800-mRNA-1
Gene Sequence

>Msa0550800

ATGACGGCATCATCATCAGTATCCTCTCACCTCCTCGTCGTTCTCCGTTCACAACCGCCGTTACCGTCACCGTCATCTTCCTCTTTCATTTCATTTCTCAAACCTCTCTTTATTCCTTCTTCCAATATTACCCTTCGAAAATTTCACCCTCACCCATCCCTTCCAAAAACCCGTTCACCATATTTCTTATCCACACCCCCTTTTTCTTCCCGCGCTTTTTCCTACATCCCTCCTCTTTCTTCCTTCGTTGAAGGTTCAACTTCAAAATCCATAGAAGAAGACGAAATTGAAGATGAATATGATGAAGAAAGAGATGAATTTGAAAGTGAAAGAGAGAATTATGAAGATACCAAAGTGATGGTGGATGAGAGTGAAACTACATCGTCGCCATTGGTGACAAAGAGAGAAGAGAGATTGAAACTGGAAGTGCCGAGTTTGAGTGTGAAGGAAAGGAAAGAACTTGGGTCTTATGCACATAGTTTGGGGAAAAAGCTTAGCACACAATTGGTGGGTAAGTCTGGTGTTACACCCAATCTTATTACTGCTTTCAGTGATAACCTTGAAGCTAATGAACTTCTTAAGATTAAAATACACGGGAGTTGTCCAGGTGAGTTAGAAGATGTTGTGAAGCAGTTGGAAGAAGCAACTGGTTCAGTGACCGTTGGCCAGATTGGTCGAACCCTTATTTTATACAGGCCTAGTCTCTCCAAATTGAAGGTAGAAGAAAAGAAGAAACAAGTTCGGAAACTTTTTCTGGAAAAACAAAATAAACGAAGACTACTAATAAACAGGAGTAGGGAACAAGAACCCAAATCATCACGGCGGGGTTCGCCATGGAAAGCGAGAGGAAATAGGTCATAA

Protein sequence

>Msa0550800

MTASSSVSSHLLVVLRSQPPLPSPSSSSFISFLKPLFIPSSNITLRKFHPHPSLPKTRSPYFLSTPPFSSRAFSYIPPLSSFVEGSTSKSIEEDEIEDEYDEERDEFESERENYEDTKVMVDESETTSSPLVTKREERLKLEVPSLSVKERKELGSYAHSLGKKLSTQLVGKSGVTPNLITAFSDNLEANELLKIKIHGSCPGELEDVVKQLEEATGSVTVGQIGRTLILYRPSLSKLKVEEKKKQVRKLFLEKQNKRRLLINRSREQEPKSSRRGSPWKARGNRS*