AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0189150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0189150 MtrunA17_Chr2g0278051 77.959 245 14 2 1 207 1 243 8.07e-128 360
Msa0189150 MtrunA17_Chr2g0278261 51.256 199 56 3 49 206 49 247 5.75e-62 193
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0189150 AT3G26070.1 52.151 186 48 2 62 206 56 241 3.61e-61 191
Msa0189150 AT3G26080.1 47.917 192 60 3 55 206 42 233 2.89e-52 168
Msa0189150 AT3G26080.2 41.629 221 60 4 55 206 42 262 5.43e-46 153

Find 66 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCTAACTTGAAGCATTT+TGG 0.105595 2_1:-4466830 Msa0189150:three_prime_UTR
AAATTTGATACCTTCAAAAT+TGG 0.195834 2_1:-4467993 Msa0189150:CDS
ATCAAGAAGTTCTTCTTTAA+TGG 0.206372 2_1:+4469805 None:intergenic
GCCACTTTCTTTGCATTTAG+AGG 0.223580 2_1:+4468020 None:intergenic
TCAACCCTTTGTTGGTCTTC+AGG 0.234480 2_1:+4469746 None:intergenic
CACTCTCAGGGCCCAAAATA+TGG 0.237918 2_1:-4468175 Msa0189150:CDS
AAACTTGTTCATCTTGAAAA+TGG 0.247984 2_1:-4467017 Msa0189150:CDS
ACGGTCCAGATTCCATATTT+TGG 0.250687 2_1:+4468163 None:intergenic
TGAACTTGAAATAACATATT+TGG 0.312424 2_1:-4467224 Msa0189150:CDS
TTGCCTTTCTTAAAGATTGC+AGG 0.324447 2_1:+4469839 None:intergenic
ATCGTTTGTTTGGTTTGGTT+TGG 0.348834 2_1:+4470067 None:intergenic
TTTAAATCGTTTGTTTGGTT+TGG 0.352423 2_1:+4470062 None:intergenic
CAATCAATGCTGACACTCTC+AGG 0.359671 2_1:-4468188 Msa0189150:CDS
AATGAATATAATAATGTAAT+GGG 0.376709 2_1:-4466755 Msa0189150:three_prime_UTR
GTGAGTTTAAATCGTTTGTT+TGG 0.379679 2_1:+4470057 None:intergenic
AGGGCCCAAAATATGGAATC+TGG 0.402604 2_1:-4468168 Msa0189150:CDS
TGCCTCCAGAGCAAAGCTTT+AGG 0.407184 2_1:+4466662 None:intergenic
AACGATTTAAACTCACCTAA+TGG 0.414557 2_1:-4470050 Msa0189150:exon
TTTGATACCTTCAAAATTGG+AGG 0.416449 2_1:-4467990 Msa0189150:CDS
CAACCTGATCAACCCTTTGT+TGG 0.421516 2_1:+4469738 None:intergenic
TAGTAGCAAGGTTGTGATTG+TGG 0.421596 2_1:+4469897 None:intergenic
TTCCCTGCAATCTTTAAGAA+AGG 0.424398 2_1:-4469842 Msa0189150:CDS
AAATGGTGGATCCATCTTAC+CGG 0.426574 2_1:-4467000 Msa0189150:CDS
CTTCAAGTTAGCTTGAATAG+TGG 0.427481 2_1:+4466838 None:intergenic
AAGTAGAAGATAAGGCCATT+AGG 0.430468 2_1:+4470035 None:intergenic
TTTATGATGTGAATGATTTG+TGG 0.440863 2_1:+4469991 None:intergenic
AGTTCACCACGAGCTGTGTC+AGG 0.463279 2_1:+4467241 None:intergenic
AGACCAACAAAGGGTTGATC+AGG 0.472264 2_1:-4469741 Msa0189150:intron
GAATAAGAATAAGAAGATAG+TGG 0.474828 2_1:+4469953 None:intergenic
CACCTAAAGCTTTGCTCTGG+AGG 0.479558 2_1:-4466664 Msa0189150:three_prime_UTR
AAAGAGTGAAGTAGAAGATA+AGG 0.481353 2_1:+4470027 None:intergenic
TATCACCTAAAGCTTTGCTC+TGG 0.481924 2_1:-4466667 Msa0189150:three_prime_UTR
AATAAGAAGATAGTGGTGAA+TGG 0.489559 2_1:+4469960 None:intergenic
TGCCTTTCTTAAAGATTGCA+GGG 0.492269 2_1:+4469840 None:intergenic
GAATGAATATAATAATGTAA+TGG 0.492853 2_1:-4466756 Msa0189150:three_prime_UTR
CATGCAGGAACCCGGTAAGA+TGG 0.494136 2_1:+4466989 None:intergenic
CGACTTCAGAAAGCGCTGAC+GGG 0.508365 2_1:+4466895 None:intergenic
ACCTCTAAATGCAAAGAAAG+TGG 0.508669 2_1:-4468021 Msa0189150:CDS
CTTGTTCATCTTGAAAATGG+TGG 0.510401 2_1:-4467014 Msa0189150:CDS
CCTTTGTTGGTCTTCAGGAG+TGG 0.511583 2_1:+4469751 None:intergenic
TCGACTTCAGAAAGCGCTGA+CGG 0.520533 2_1:+4466894 None:intergenic
AAGAAAACACAACAGTGATA+AGG 0.521202 2_1:+4466939 None:intergenic
GGGTTTATTTCTCTTGAATG+TGG 0.527364 2_1:-4466734 Msa0189150:three_prime_UTR
ATCTGGACCGTTCTTCAACC+AGG 0.530767 2_1:-4468151 Msa0189150:intron
GCTGTGTCAGGAGCCTTGAC+AGG 0.549937 2_1:+4467253 None:intergenic
CACTCCTGAAGACCAACAAA+GGG 0.562257 2_1:-4469750 Msa0189150:CDS
TCCTCGATCAAGTGATGCAA+TGG 0.566938 2_1:+4469781 None:intergenic
AAGAAGATAGTGGTGAATGG+AGG 0.568929 2_1:+4469963 None:intergenic
CAGTATATCATGCAGGAACC+CGG 0.569836 2_1:+4466981 None:intergenic
GGTTGTGATTGTGGTAGATG+AGG 0.590635 2_1:+4469906 None:intergenic
AATCAATGCTGACACTCTCA+GGG 0.592341 2_1:-4468187 Msa0189150:CDS
CCACTCCTGAAGACCAACAA+AGG 0.595548 2_1:-4469751 Msa0189150:CDS
AATGGTGGATCCATCTTACC+GGG 0.603396 2_1:-4466999 Msa0189150:CDS
ATAATGACAGTATATCATGC+AGG 0.622717 2_1:+4466974 None:intergenic
GTTGTGATTGTGGTAGATGA+GGG 0.623766 2_1:+4469907 None:intergenic
TGTGTCACCTGGTTGAAGAA+CGG 0.624616 2_1:+4468144 None:intergenic
ACATTTGCAGATACCTGTCA+AGG 0.625872 2_1:-4467266 Msa0189150:intron
TAATTTGACAGGGTATCAAG+AGG 0.636818 2_1:-4467049 Msa0189150:intron
AGGGTATCAAGAGGTGACAA+AGG 0.637311 2_1:-4467040 Msa0189150:CDS
GAATGATTTGTGGTGTTGAG+AGG 0.643015 2_1:+4470001 None:intergenic
CTCGAGTGAACTGTTAATTG+AGG 0.645432 2_1:+4466557 None:intergenic
ATGAATATAATAATGTAATG+GGG 0.645736 2_1:-4466754 Msa0189150:three_prime_UTR
AAGGCTCCTGACACAGCTCG+TGG 0.649152 2_1:-4467247 Msa0189150:CDS
GCCATTGCATCACTTGATCG+AGG 0.654824 2_1:-4469782 Msa0189150:CDS
TTGTGATTGTGGTAGATGAG+GGG 0.690034 2_1:+4469908 None:intergenic
CATATTTGGATGAAGAACTG+AGG 0.704904 2_1:-4467210 Msa0189150:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAATATAATAATGTAAT+GGG - chr2_1:4469871-4469890 Msa0189150:CDS 10.0%
!! TAACAAGATAAAAATAGAAA+AGG - chr2_1:4467303-4467322 Msa0189150:intron 15.0%
!!! TTCTGAAAATAAGATAAAAA+TGG - chr2_1:4467374-4467393 Msa0189150:intron 15.0%
!! TTAGATTTGATATGATAAAT+TGG - chr2_1:4467760-4467779 Msa0189150:intron 15.0%
!! TATTTATACTCATATAATGA+AGG - chr2_1:4467876-4467895 Msa0189150:intron 15.0%
!! ATTTCTACAAATTAATGATT+TGG + chr2_1:4468844-4468863 None:intergenic 15.0%
!! TTAAAAATGAAATTCTATTG+AGG - chr2_1:4469128-4469147 Msa0189150:intron 15.0%
!! GAATGAATATAATAATGTAA+TGG - chr2_1:4469870-4469889 Msa0189150:CDS 15.0%
!! ATGAATATAATAATGTAATG+GGG - chr2_1:4469872-4469891 Msa0189150:CDS 15.0%
!! TTAAGTAGTTTATCCAAATA+GGG + chr2_1:4467145-4467164 None:intergenic 20.0%
!! ATTAAGTAGTTTATCCAAAT+AGG + chr2_1:4467146-4467165 None:intergenic 20.0%
!! TTGGATAAACTACTTAATTA+AGG - chr2_1:4467148-4467167 Msa0189150:intron 20.0%
!! AATAAGATAAAAATGGCTTA+TGG - chr2_1:4467381-4467400 Msa0189150:intron 20.0%
!! AAATCTAACAAAAAACAAAG+GGG + chr2_1:4467748-4467767 None:intergenic 20.0%
!! CAAATCTAACAAAAAACAAA+GGG + chr2_1:4467749-4467768 None:intergenic 20.0%
!! TCAAATCTAACAAAAAACAA+AGG + chr2_1:4467750-4467769 None:intergenic 20.0%
!! AAAACAAGTATATAGAGTAT+AGG + chr2_1:4468038-4468057 None:intergenic 20.0%
!! GATTTCATTCAAACTTAAAT+AGG - chr2_1:4468209-4468228 Msa0189150:CDS 20.0%
!! AAATTTGATACCTTCAAAAT+TGG - chr2_1:4468633-4468652 Msa0189150:intron 20.0%
!! TATGATGATCAAAGTAATTA+TGG + chr2_1:4469336-4469355 None:intergenic 20.0%
!! TGAACTTGAAATAACATATT+TGG - chr2_1:4469402-4469421 Msa0189150:intron 20.0%
!! TTTCTCATTATAATTTGACA+GGG - chr2_1:4469567-4469586 Msa0189150:intron 20.0%
! TTTAAATCGTTTGTTTGGTT+TGG + chr2_1:4466567-4466586 None:intergenic 25.0%
! TTTATGATGTGAATGATTTG+TGG + chr2_1:4466638-4466657 None:intergenic 25.0%
! GAATAAGAATAAGAAGATAG+TGG + chr2_1:4466676-4466695 None:intergenic 25.0%
! ATCAAGAAGTTCTTCTTTAA+TGG + chr2_1:4466824-4466843 None:intergenic 25.0%
! TAGTTTACTTGATGGAAAAT+GGG - chr2_1:4467045-4467064 Msa0189150:intron 25.0%
! ATATGGTAAGGAAAAAGAAA+TGG + chr2_1:4467117-4467136 None:intergenic 25.0%
! ATATAGAAGCTGAAAATTAG+AGG + chr2_1:4467956-4467975 None:intergenic 25.0%
!! GATTTACAGTATGTATTTTG+TGG + chr2_1:4468061-4468080 None:intergenic 25.0%
! ACATATGCAAATGTTAGAAT+TGG + chr2_1:4468547-4468566 None:intergenic 25.0%
! TAAACGAATCAATATTCTGT+AGG - chr2_1:4468566-4468585 Msa0189150:intron 25.0%
! TTGTAATATTCTAGATGTGA+TGG - chr2_1:4468709-4468728 Msa0189150:intron 25.0%
!! GTTTCTCTTAAAGTTTTTCT+AGG - chr2_1:4468873-4468892 Msa0189150:intron 25.0%
!!! GTAACATGTATAAGTTTTGT+TGG + chr2_1:4469185-4469204 None:intergenic 25.0%
! ACTGTGGAATTAAATACATA+GGG + chr2_1:4469241-4469260 None:intergenic 25.0%
! AACTGTGGAATTAAATACAT+AGG + chr2_1:4469242-4469261 None:intergenic 25.0%
! GTTTGTTTATATTACTGCAT+TGG - chr2_1:4469458-4469477 Msa0189150:intron 25.0%
! TAATGTCTATATATACCACA+TGG + chr2_1:4469527-4469546 None:intergenic 25.0%
! CTTTCTCATTATAATTTGAC+AGG - chr2_1:4469566-4469585 Msa0189150:intron 25.0%
!! AAACTTGTTCATCTTGAAAA+TGG - chr2_1:4469609-4469628 Msa0189150:intron 25.0%
!!! TGTTTCAAATTGCTTTTTGT+TGG - chr2_1:4470029-4470048 Msa0189150:CDS 25.0%
GTGAGTTTAAATCGTTTGTT+TGG + chr2_1:4466572-4466591 None:intergenic 30.0%
AACGATTTAAACTCACCTAA+TGG - chr2_1:4466576-4466595 Msa0189150:three_prime_UTR 30.0%
AAAGAGTGAAGTAGAAGATA+AGG + chr2_1:4466602-4466621 None:intergenic 30.0%
! AATAAGAAGATAGTGGTGAA+TGG + chr2_1:4466669-4466688 None:intergenic 30.0%
! ATTTTTGTGAGATAGTAGCA+AGG + chr2_1:4466744-4466763 None:intergenic 30.0%
TTGCTACTATCTCACAAAAA+TGG - chr2_1:4466743-4466762 Msa0189150:three_prime_UTR 30.0%
ATGAAATGTTGCAGAAAACA+AGG + chr2_1:4466924-4466943 None:intergenic 30.0%
CTAGTTTACTTGATGGAAAA+TGG - chr2_1:4467044-4467063 Msa0189150:intron 30.0%
TTATGATATGGCAATCCTAA+TGG + chr2_1:4467194-4467213 None:intergenic 30.0%
ATTTGCAACTTATAGCACAA+GGG + chr2_1:4467218-4467237 None:intergenic 30.0%
TATTTGCAACTTATAGCACA+AGG + chr2_1:4467219-4467238 None:intergenic 30.0%
GACTTATTTCATCTCATCTA+CGG + chr2_1:4467463-4467482 None:intergenic 30.0%
! TTGTTGCTACTAGCTTAAAT+AGG - chr2_1:4467847-4467866 Msa0189150:intron 30.0%
!! TTAGTCTTGCGAAAATGAAA+GGG + chr2_1:4467994-4468013 None:intergenic 30.0%
!! TTTAGTCTTGCGAAAATGAA+AGG + chr2_1:4467995-4468014 None:intergenic 30.0%
!!! CAACTTTTTTCACTCTGTTT+CGG - chr2_1:4468138-4468157 Msa0189150:intron 30.0%
GTTTGAATGAAATCCAAAAC+AGG + chr2_1:4468203-4468222 None:intergenic 30.0%
! CTGATAATGAATGACCTTAA+AGG - chr2_1:4468302-4468321 Msa0189150:intron 30.0%
AATGACCTTAAAGGTTTACT+TGG - chr2_1:4468311-4468330 Msa0189150:intron 30.0%
ATGACCTTAAAGGTTTACTT+GGG - chr2_1:4468312-4468331 Msa0189150:intron 30.0%
GTTACTGATCTCAAAAACTT+TGG + chr2_1:4468407-4468426 None:intergenic 30.0%
TTTGATACCTTCAAAATTGG+AGG - chr2_1:4468636-4468655 Msa0189150:intron 30.0%
ATATATCTGACCTCACTTTA+CGG + chr2_1:4468776-4468795 None:intergenic 30.0%
AGAAGAGTAGATATGATGAA+GGG + chr2_1:4468927-4468946 None:intergenic 30.0%
AAGAAGAGTAGATATGATGA+AGG + chr2_1:4468928-4468947 None:intergenic 30.0%
TAGAAAAGAAGGTGAAAACT+TGG + chr2_1:4468996-4469015 None:intergenic 30.0%
!!! TAAGTTTTGTTGGAACTTGT+TGG + chr2_1:4469175-4469194 None:intergenic 30.0%
! AGCAATTTGAAGTTGAGATT+AGG + chr2_1:4469494-4469513 None:intergenic 30.0%
ATAATGACAGTATATCATGC+AGG + chr2_1:4469655-4469674 None:intergenic 30.0%
AAGAAAACACAACAGTGATA+AGG + chr2_1:4469690-4469709 None:intergenic 30.0%
! TTGTGTTTTCTTCCTTTCAA+GGG - chr2_1:4469698-4469717 Msa0189150:intron 30.0%
!! AAGCTAACTTGAAGCATTTT+GGG - chr2_1:4469797-4469816 Msa0189150:CDS 30.0%
!! ATCGTTTGTTTGGTTTGGTT+TGG + chr2_1:4466562-4466581 None:intergenic 35.0%
AAGTAGAAGATAAGGCCATT+AGG + chr2_1:4466594-4466613 None:intergenic 35.0%
! TTCCCTGCAATCTTTAAGAA+AGG - chr2_1:4466784-4466803 Msa0189150:three_prime_UTR 35.0%
TGCCTTTCTTAAAGATTGCA+GGG + chr2_1:4466789-4466808 None:intergenic 35.0%
TTGCCTTTCTTAAAGATTGC+AGG + chr2_1:4466790-4466809 None:intergenic 35.0%
GCAGAAAACAAGGCATATAA+AGG + chr2_1:4466914-4466933 None:intergenic 35.0%
TTGGATTAACTGCTTCAAGT+TGG + chr2_1:4467006-4467025 None:intergenic 35.0%
TCAAGTAAACTAGACTTGAG+AGG + chr2_1:4467037-4467056 None:intergenic 35.0%
! CTCAAGTCTAGTTTACTTGA+TGG - chr2_1:4467037-4467056 Msa0189150:CDS 35.0%
TCAGTCAATCTTGCAAACTA+AGG - chr2_1:4467087-4467106 Msa0189150:intron 35.0%
! TCTTTTTCCTTACCATATGC+AGG - chr2_1:4467119-4467138 Msa0189150:intron 35.0%
CTACTTAATTAAGGCCTGTT+TGG - chr2_1:4467157-4467176 Msa0189150:intron 35.0%
AATAAGCTGTTTGTCCAAAC+AGG - chr2_1:4467235-4467254 Msa0189150:CDS 35.0%
!! TTTTCAGAAGCTCTCTAAGA+TGG + chr2_1:4467363-4467382 None:intergenic 35.0%
TATGAACTATGAGTCTGTCT+GGG + chr2_1:4467488-4467507 None:intergenic 35.0%
GTCTATGTCAATGCTTCATA+GGG + chr2_1:4467517-4467536 None:intergenic 35.0%
TGTCTATGTCAATGCTTCAT+AGG + chr2_1:4467518-4467537 None:intergenic 35.0%
!! GCACTGACACTTTTAATTGA+AGG + chr2_1:4467611-4467630 None:intergenic 35.0%
ACACGTTTGATGCATCATAA+TGG + chr2_1:4467688-4467707 None:intergenic 35.0%
TAGATGGTTAGTGAAATGAG+TGG + chr2_1:4467818-4467837 None:intergenic 35.0%
GCAACAATGATCAATCTAGA+TGG + chr2_1:4467834-4467853 None:intergenic 35.0%
TAACACTGTCAAAATGTACC+AGG + chr2_1:4468255-4468274 None:intergenic 35.0%
ACCTCTAAATGCAAAGAAAG+TGG - chr2_1:4468605-4468624 Msa0189150:intron 35.0%
! TACTAAGCCTCCAATTTTGA+AGG + chr2_1:4468646-4468665 None:intergenic 35.0%
TCACTTTACGGGATAAGATT+TGG + chr2_1:4468764-4468783 None:intergenic 35.0%
AAATCTTATCCCGTAAAGTG+AGG - chr2_1:4468763-4468782 Msa0189150:intron 35.0%
TATATCTGACCTCACTTTAC+GGG + chr2_1:4468775-4468794 None:intergenic 35.0%
GTAAAGTGAGGTCAGATATA+TGG - chr2_1:4468775-4468794 Msa0189150:intron 35.0%
AGGATCTATCGTAGAAAAGA+AGG + chr2_1:4469007-4469026 None:intergenic 35.0%
GTGGTAAGACTAGACAATAT+AGG + chr2_1:4469073-4469092 None:intergenic 35.0%
AAGAGATGAGAATGTTGTGT+TGG + chr2_1:4469100-4469119 None:intergenic 35.0%
CAACATTCTCATCTCTTCTT+AGG - chr2_1:4469103-4469122 Msa0189150:intron 35.0%
ACATAGGGAATTGCAGATAA+AGG + chr2_1:4469226-4469245 None:intergenic 35.0%
GAGTATTATGGTACTAACTG+TGG + chr2_1:4469257-4469276 None:intergenic 35.0%
!! TACACACATCAGGAGTATTA+TGG + chr2_1:4469269-4469288 None:intergenic 35.0%
CATATTTGGATGAAGAACTG+AGG - chr2_1:4469416-4469435 Msa0189150:intron 35.0%
AAGTTGAGATTAGGTACACT+GGG + chr2_1:4469485-4469504 None:intergenic 35.0%
TTGCTTAACTATCAACCATG+TGG - chr2_1:4469509-4469528 Msa0189150:intron 35.0%
! TAATTTGACAGGGTATCAAG+AGG - chr2_1:4469577-4469596 Msa0189150:intron 35.0%
CTTGTTCATCTTGAAAATGG+TGG - chr2_1:4469612-4469631 Msa0189150:intron 35.0%
! GTTGTGTTTTCTTCCTTTCA+AGG - chr2_1:4469697-4469716 Msa0189150:intron 35.0%
! TGTGTTTTCTTCCTTTCAAG+GGG - chr2_1:4469699-4469718 Msa0189150:intron 35.0%
! CTTCAAGTTAGCTTGAATAG+TGG + chr2_1:4469791-4469810 None:intergenic 35.0%
!! CAAGCTAACTTGAAGCATTT+TGG - chr2_1:4469796-4469815 Msa0189150:CDS 35.0%
! GGGTTTATTTCTCTTGAATG+TGG - chr2_1:4469892-4469911 Msa0189150:CDS 35.0%
!! TGCTTTTTGTTGGATAAGTG+TGG - chr2_1:4470039-4470058 Msa0189150:exon 35.0%
! GAATGATTTGTGGTGTTGAG+AGG + chr2_1:4466628-4466647 None:intergenic 40.0%
! AAGAAGATAGTGGTGAATGG+AGG + chr2_1:4466666-4466685 None:intergenic 40.0%
TTGTGATTGTGGTAGATGAG+GGG + chr2_1:4466721-4466740 None:intergenic 40.0%
GTTGTGATTGTGGTAGATGA+GGG + chr2_1:4466722-4466741 None:intergenic 40.0%
TAGTAGCAAGGTTGTGATTG+TGG + chr2_1:4466732-4466751 None:intergenic 40.0%
AGTTTGCAAGATTGACTGAG+AGG + chr2_1:4467086-4467105 None:intergenic 40.0%
ATTAAGGCCTGTTTGGACTT+TGG - chr2_1:4467164-4467183 Msa0189150:intron 40.0%
TTGGACTTTGGATTGCCATT+AGG - chr2_1:4467176-4467195 Msa0189150:intron 40.0%
TAGCACAAGGGCTTATGATA+TGG + chr2_1:4467206-4467225 None:intergenic 40.0%
ACTTATGCTATGAGCACTCA+GGG + chr2_1:4467261-4467280 None:intergenic 40.0%
CTTCCATAAGCTCTCTCAAA+CGG - chr2_1:4467419-4467438 Msa0189150:intron 40.0%
CTATGAACTATGAGTCTGTC+TGG + chr2_1:4467489-4467508 None:intergenic 40.0%
CATTGACACATGTCAAACAC+CGG - chr2_1:4467580-4467599 Msa0189150:intron 40.0%
!! CTTTTAATTGAAGGCGTGTC+CGG + chr2_1:4467602-4467621 None:intergenic 40.0%
! AACAAAAAACAAAGGGGCAC+TGG + chr2_1:4467742-4467761 None:intergenic 40.0%
AGCACCCAAGTAAACCTTTA+AGG + chr2_1:4468319-4468338 None:intergenic 40.0%
AATCAATGCTGACACTCTCA+GGG - chr2_1:4468439-4468458 Msa0189150:intron 40.0%
! CGGTCCAGATTCCATATTTT+GGG + chr2_1:4468465-4468484 None:intergenic 40.0%
! ACGGTCCAGATTCCATATTT+TGG + chr2_1:4468466-4468485 None:intergenic 40.0%
TCAATTTCACTTGTGTCACC+TGG + chr2_1:4468496-4468515 None:intergenic 40.0%
! GCCACTTTCTTTGCATTTAG+AGG + chr2_1:4468609-4468628 None:intergenic 40.0%
CTTTACGGGATAAGATTTGG+TGG + chr2_1:4468761-4468780 None:intergenic 40.0%
AAAACTTGGCTTAGGTGGTT+TGG + chr2_1:4468982-4469001 None:intergenic 40.0%
AGAAGGTGAAAACTTGGCTT+AGG + chr2_1:4468990-4469009 None:intergenic 40.0%
AGATGAGAATGTTGTGTTGG+CGG + chr2_1:4469097-4469116 None:intergenic 40.0%
! CAGAAGCATATACACACATC+AGG + chr2_1:4469279-4469298 None:intergenic 40.0%
ACATTTGCAGATACCTGTCA+AGG - chr2_1:4469360-4469379 Msa0189150:intron 40.0%
GAAGTTGAGATTAGGTACAC+TGG + chr2_1:4469486-4469505 None:intergenic 40.0%
!! AAATGGTGGATCCATCTTAC+CGG - chr2_1:4469626-4469645 Msa0189150:intron 40.0%
!!! GGTAGTTTTAACCCCTTGAA+AGG + chr2_1:4469713-4469732 None:intergenic 40.0%
TATCACCTAAAGCTTTGCTC+TGG - chr2_1:4469959-4469978 Msa0189150:CDS 40.0%
CTCGAGTGAACTGTTAATTG+AGG + chr2_1:4470072-4470091 None:intergenic 40.0%
GGTTGTGATTGTGGTAGATG+AGG + chr2_1:4466723-4466742 None:intergenic 45.0%
TCCTCGATCAAGTGATGCAA+TGG + chr2_1:4466848-4466867 None:intergenic 45.0%
CACTCCTGAAGACCAACAAA+GGG - chr2_1:4466876-4466895 Msa0189150:three_prime_UTR 45.0%
!! TCAACCCTTTGTTGGTCTTC+AGG + chr2_1:4466883-4466902 None:intergenic 45.0%
! AGACCAACAAAGGGTTGATC+AGG - chr2_1:4466885-4466904 Msa0189150:three_prime_UTR 45.0%
CAACCTGATCAACCCTTTGT+TGG + chr2_1:4466891-4466910 None:intergenic 45.0%
AATAGGGCCTGCATATGGTA+AGG + chr2_1:4467129-4467148 None:intergenic 45.0%
TACCATATGCAGGCCCTATT+TGG - chr2_1:4467129-4467148 Msa0189150:intron 45.0%
ATCCAAATAGGGCCTGCATA+TGG + chr2_1:4467134-4467153 None:intergenic 45.0%
TGGCAATCCAAAGTCCAAAC+AGG + chr2_1:4467174-4467193 None:intergenic 45.0%
CACTTATGCTATGAGCACTC+AGG + chr2_1:4467262-4467281 None:intergenic 45.0%
AGACCGTTTGAGAGAGCTTA+TGG + chr2_1:4467425-4467444 None:intergenic 45.0%
CATCTACGGACATAATCACG+TGG + chr2_1:4467449-4467468 None:intergenic 45.0%
CGTGATTAGATGTGTCAGTG+CGG - chr2_1:4467544-4467563 Msa0189150:intron 45.0%
AGGTCTCCTAAACTACCATC+TGG - chr2_1:4468229-4468248 Msa0189150:intron 45.0%
TCAAAATGTACCAGGCCAGA+TGG + chr2_1:4468247-4468266 None:intergenic 45.0%
CAATCAATGCTGACACTCTC+AGG - chr2_1:4468438-4468457 Msa0189150:intron 45.0%
AGGGCCCAAAATATGGAATC+TGG - chr2_1:4468458-4468477 Msa0189150:intron 45.0%
TGTGTCACCTGGTTGAAGAA+CGG + chr2_1:4468485-4468504 None:intergenic 45.0%
! GGTGGTTGGTGTATTCGTAT+AGG + chr2_1:4468743-4468762 None:intergenic 45.0%
!! ACGGGATAAGATTTGGTGGT+TGG + chr2_1:4468757-4468776 None:intergenic 45.0%
AGGTGAAAACTTGGCTTAGG+TGG + chr2_1:4468987-4469006 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAGTT+GGG + chr2_1:4469032-4469051 None:intergenic 45.0%
TAGAGAGAGAGAGAGAGAGT+TGG + chr2_1:4469033-4469052 None:intergenic 45.0%
! AGGGTATCAAGAGGTGACAA+AGG - chr2_1:4469586-4469605 Msa0189150:intron 45.0%
!! AATGGTGGATCCATCTTACC+GGG - chr2_1:4469627-4469646 Msa0189150:intron 45.0%
CAGTATATCATGCAGGAACC+CGG + chr2_1:4469648-4469667 None:intergenic 45.0%
GCCATTGCATCACTTGATCG+AGG - chr2_1:4466844-4466863 Msa0189150:three_prime_UTR 50.0%
!! CCTTTGTTGGTCTTCAGGAG+TGG + chr2_1:4466878-4466897 None:intergenic 50.0%
CCACTCCTGAAGACCAACAA+AGG - chr2_1:4466875-4466894 Msa0189150:three_prime_UTR 50.0%
! GACTTGAGAGGCTGCTTTGT+TGG + chr2_1:4467025-4467044 None:intergenic 50.0%
AAATCCAAAACAGGCCAGCC+CGG + chr2_1:4468194-4468213 None:intergenic 50.0%
TCCTAAACTACCATCTGGCC+TGG - chr2_1:4468234-4468253 Msa0189150:intron 50.0%
ACCAGGCCAGATGGTAGTTT+AGG + chr2_1:4468238-4468257 None:intergenic 50.0%
CACTCTCAGGGCCCAAAATA+TGG - chr2_1:4468451-4468470 Msa0189150:intron 50.0%
ATCTGGACCGTTCTTCAACC+AGG - chr2_1:4468475-4468494 Msa0189150:intron 50.0%
GAGAGAGAGAGAGAGAGTTG+GGG + chr2_1:4469031-4469050 None:intergenic 50.0%
! AGAATGTTGTGTTGGCGGTG+TGG + chr2_1:4469092-4469111 None:intergenic 50.0%
!! TCGACTTCAGAAAGCGCTGA+CGG + chr2_1:4469735-4469754 None:intergenic 50.0%
CACCTAAAGCTTTGCTCTGG+AGG - chr2_1:4469962-4469981 Msa0189150:CDS 50.0%
TGCCTCCAGAGCAAAGCTTT+AGG + chr2_1:4469967-4469986 None:intergenic 50.0%
ATGAGCACTCAGGGCCTGTT+TGG + chr2_1:4467252-4467271 None:intergenic 55.0%
!! TGAGTTAACTTGCTGCCCGC+CGG - chr2_1:4468166-4468185 Msa0189150:CDS 55.0%
GAGAGAGAGAGAGTTGGGGT+AGG + chr2_1:4469027-4469046 None:intergenic 55.0%
AGTTCACCACGAGCTGTGTC+AGG + chr2_1:4469388-4469407 None:intergenic 55.0%
CATGCAGGAACCCGGTAAGA+TGG + chr2_1:4469640-4469659 None:intergenic 55.0%
!! CGACTTCAGAAAGCGCTGAC+GGG + chr2_1:4469734-4469753 None:intergenic 55.0%
GCTGTGTCAGGAGCCTTGAC+AGG + chr2_1:4469376-4469395 None:intergenic 60.0%
AAGGCTCCTGACACAGCTCG+TGG - chr2_1:4469379-4469398 Msa0189150:intron 60.0%
AAAACAGGCCAGCCCGGCGC+CGG + chr2_1:4468188-4468207 None:intergenic 70.0%
!! AACTTGCTGCCCGCCGGCGC+CGG - chr2_1:4468172-4468191 Msa0189150:CDS 75.0%
!!! GGCGCCGGGCTGGCCTGTTT+TGG - chr2_1:4468187-4468206 Msa0189150:CDS 75.0%
!! ACTTGCTGCCCGCCGGCGCC+GGG - chr2_1:4468173-4468192 Msa0189150:CDS 80.0%
!! ACAGGCCAGCCCGGCGCCGG+CGG + chr2_1:4468185-4468204 None:intergenic 85.0%
!!! CAGGCCAGCCCGGCGCCGGC+GGG + chr2_1:4468184-4468203 None:intergenic 90.0%
!! GCTGCCCGCCGGCGCCGGGC+TGG - chr2_1:4468177-4468196 Msa0189150:CDS 95.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 4466553 4470095 4466553 ID=Msa0189150;Name=Msa0189150
chr2_1 mRNA 4466553 4470095 4466553 ID=Msa0189150-mRNA-1;Parent=Msa0189150;Name=Msa0189150-mRNA-1;_AED=0.28;_eAED=0.28;_QI=42|0.75|1|1|1|1|5|435|207
chr2_1 exon 4466553 4467060 4466553 ID=Msa0189150-mRNA-1:exon:2003;Parent=Msa0189150-mRNA-1
chr2_1 exon 4467211 4467278 4467211 ID=Msa0189150-mRNA-1:exon:2002;Parent=Msa0189150-mRNA-1
chr2_1 exon 4467986 4468060 4467986 ID=Msa0189150-mRNA-1:exon:2001;Parent=Msa0189150-mRNA-1
chr2_1 exon 4468152 4468247 4468152 ID=Msa0189150-mRNA-1:exon:2000;Parent=Msa0189150-mRNA-1
chr2_1 exon 4469742 4470095 4469742 ID=Msa0189150-mRNA-1:exon:1999;Parent=Msa0189150-mRNA-1
chr2_1 five_prime_UTR 4470054 4470095 4470054 ID=Msa0189150-mRNA-1:five_prime_utr;Parent=Msa0189150-mRNA-1
chr2_1 CDS 4469742 4470053 4469742 ID=Msa0189150-mRNA-1:cds;Parent=Msa0189150-mRNA-1
chr2_1 CDS 4468152 4468247 4468152 ID=Msa0189150-mRNA-1:cds;Parent=Msa0189150-mRNA-1
chr2_1 CDS 4467986 4468060 4467986 ID=Msa0189150-mRNA-1:cds;Parent=Msa0189150-mRNA-1
chr2_1 CDS 4467211 4467278 4467211 ID=Msa0189150-mRNA-1:cds;Parent=Msa0189150-mRNA-1
chr2_1 CDS 4466988 4467060 4466988 ID=Msa0189150-mRNA-1:cds;Parent=Msa0189150-mRNA-1
chr2_1 three_prime_UTR 4466553 4466987 4466553 ID=Msa0189150-mRNA-1:three_prime_utr;Parent=Msa0189150-mRNA-1
Gene Sequence

>Msa0189150

ATGGCCTTATCTTCTACTTCACTCTTTTCACCTCTCAACACCACAAATCATTCACATCATAAACTACTCCTCCATTCACCACTATCTTCTTATTCTTATTCTTCTTCTCACTTTCTAATCACACCCCTCATCTACCACAATCACAACCTTGCTACTATCTCACAAAAATGGAGAACAAATGTTTCATTTTTCCCTGCAATCTTTAAGAAAGGCAAAGATGCAAACACCATTAAAGAAGAACTTCTTGATGCCATTGCATCACTTGATCGAGGAGCTGATGCCACTCCTGAAGACCAACAAAGGGTTGATCAGAGACCAAAGTTTTTGAGATCAGTAACAAATTATCAAGCAATCAATGCTGACACTCTCAGGGCCCAAAATATGGAATCTGGACCGTTCTTCAACCAGGTGACAGCAGATTTAACACCTCTAAATGCAAAGAAAGTGGCTGTGAAATTTGATACCTTCAAAATTGGAGGCTTAATACCTGTCAAGGCTCCTGACACAGCTCGTGGTGAACTTGAAATAACATATTTGGATGAAGAACTGAGGGTATCAAGAGGTGACAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCCATCTTACCGGGTTCCTGCATGA

Protein sequence

>Msa0189150

MALSSTSLFSPLNTTNHSHHKLLLHSPLSSYSYSSSHFLITPLIYHNHNLATISQKWRTNVSFFPAIFKKGKDANTIKEELLDAIASLDRGADATPEDQQRVDQRPKFLRSVTNYQAINADTLRAQNMESGPFFNQVTADLTPLNAKKVAVKFDTFKIGGLIPVKAPDTARGELEITYLDEELRVSRGDKGNLFILKMVDPSYRVPA*