AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0061060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0061060 MtrunA17_Chr1g0160901 89.730 185 15 2 1 182 1 184 6.65e-108 306
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0061060 AT2G01590.1 46.218 119 54 3 66 182 64 174 1.15e-29 107
Msa0061060 AT2G01590.2 46.218 119 54 3 66 182 64 174 1.17e-29 107

Find 61 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATGGATGATGCCAATT+TGG 0.174687 1_2:-19032866 Msa0061060:CDS
GAGGAGGAGAATCTGGGTTT+TGG 0.221469 1_2:+19034658 None:intergenic
GGAGAGTGGCTGGGTGAAAA+TGG 0.232098 1_2:-19034200 Msa0061060:CDS
TGATGACTCCAGAAGCTATT+AGG 0.284836 1_2:+19032832 None:intergenic
TGGAGGAAGATTGGTTTGTT+TGG 0.288556 1_2:+19034617 None:intergenic
GGTCGACGGGGAAGCTTGTT+TGG 0.309086 1_2:+19034543 None:intergenic
ATTAGTAATAAGAATGGATT+TGG 0.315469 1_2:+19034692 None:intergenic
GAATAATTGTAAATTACTTA+AGG 0.320937 1_2:-19032737 Msa0061060:three_prime_UTR
TCAATGGATGATGCCAATTT+GGG 0.347182 1_2:-19032865 Msa0061060:CDS
GGAGGAAGATTGGTTTGTTT+GGG 0.355312 1_2:+19034618 None:intergenic
AATAATTGTAAATTACTTAA+GGG 0.357061 1_2:-19032736 Msa0061060:three_prime_UTR
GACCACGATGGATTTGTTCT+TGG 0.365556 1_2:-19034267 Msa0061060:CDS
ATATCCTTCCTAATAGCTTC+TGG 0.373907 1_2:-19032840 Msa0061060:CDS
TGTTGCAGGAAGAGGAATTC+TGG 0.376018 1_2:-19032898 Msa0061060:intron
GGTGAAGAAGGAGGAGGAGG+AGG 0.376464 1_2:+19034639 None:intergenic
ACCACGATGGATTTGTTCTT+GGG 0.379690 1_2:-19034266 Msa0061060:CDS
AGGAAGGATATAGCCCAAAT+TGG 0.383783 1_2:+19032852 None:intergenic
ATTTAATGACTTTGCCGAAC+AGG 0.386369 1_2:-19034857 None:intergenic
GAGAGTGGCTGGGTGAAAAT+GGG 0.391269 1_2:-19034199 Msa0061060:CDS
GGTGTTAGTGGAGCGAAATC+TGG 0.391808 1_2:+19034172 None:intergenic
TTCTGGTGTTTGCATTTCAA+TGG 0.404184 1_2:-19032881 Msa0061060:CDS
TATCATCTATTTATCCTGTT+CGG 0.410137 1_2:+19034843 None:intergenic
TAATAACTGTGAGCTATATC+AGG 0.416563 1_2:+19034799 None:intergenic
TTGGGTGAAGAAGGAGGAGG+AGG 0.416670 1_2:+19034636 None:intergenic
TTGCTACTTACTGGTGTTAG+TGG 0.422960 1_2:+19034160 None:intergenic
TTGGTTTGTTTGGGTGAAGA+AGG 0.439191 1_2:+19034627 None:intergenic
CGAAGATGGTGATGGTCGAC+GGG 0.447807 1_2:+19034530 None:intergenic
GAGGGAAACAGGAGAGTGGC+TGG 0.452230 1_2:-19034210 Msa0061060:CDS
TCAATTTGCATGAGCGAAGA+TGG 0.459616 1_2:+19034516 None:intergenic
AGGAGGAGGTCATCAAGAAA+AGG 0.472004 1_2:+19032792 None:intergenic
AGTTGCATTAGTAATAAGAA+TGG 0.478683 1_2:+19034686 None:intergenic
TTCTTGGGACAAGTATTTGA+AGG 0.485835 1_2:-19034251 Msa0061060:CDS
AACTGGATGTTCACAGGAGG+AGG 0.486947 1_2:+19032778 None:intergenic
ATTGAACGTGCCCTTGGCGC+TGG 0.500974 1_2:-19034498 Msa0061060:CDS
TCAAGAAAAGGGACACTGAA+TGG 0.508495 1_2:+19032804 None:intergenic
ATGCAAATTGAACGTGCCCT+TGG 0.511985 1_2:-19034504 Msa0061060:CDS
ATAGAAGAAGTGTTGATAAG+AGG 0.516204 1_2:-19034823 Msa0061060:five_prime_UTR
GACAGAGCATACTTGAGGTC+AGG 0.519678 1_2:+19034456 None:intergenic
CTCTGAAGCTACCAGCGCCA+AGG 0.529782 1_2:+19034487 None:intergenic
GGAGGAGGTCATCAAGAAAA+GGG 0.540475 1_2:+19032793 None:intergenic
ATAATTGTAAATTACTTAAG+GGG 0.542003 1_2:-19032735 Msa0061060:three_prime_UTR
GCGAAGATGGTGATGGTCGA+CGG 0.545160 1_2:+19034529 None:intergenic
AAAAGAAACTGGATGTTCAC+AGG 0.549219 1_2:+19032772 None:intergenic
GTTTGTTTGGGTGAAGAAGG+AGG 0.558804 1_2:+19034630 None:intergenic
TCTTGGGACAAGTATTTGAA+GGG 0.567555 1_2:-19034250 Msa0061060:CDS
CGACGGGGAAGCTTGTTTGG+AGG 0.576924 1_2:+19034546 None:intergenic
TGTTTGGGTGAAGAAGGAGG+AGG 0.589219 1_2:+19034633 None:intergenic
AGAGTGGCTGGGTGAAAATG+GGG 0.590303 1_2:-19034198 Msa0061060:CDS
TCTGAAGCTACCAGCGCCAA+GGG 0.590855 1_2:+19034488 None:intergenic
GTTTGGAGGTAATGAAGTAG+TGG 0.605102 1_2:+19034560 None:intergenic
GACTCCAGAAGCTATTAGGA+AGG 0.610571 1_2:+19032836 None:intergenic
AGGGAAACAGGAGAGTGGCT+GGG 0.620803 1_2:-19034209 Msa0061060:CDS
GGCGCTGGTAGCTTCAGAGA+CGG 0.635842 1_2:-19034483 Msa0061060:CDS
CATAAGCAAAACATTGCAGA+GGG 0.641080 1_2:+19034732 None:intergenic
GCATAAGCAAAACATTGCAG+AGG 0.658841 1_2:+19034731 None:intergenic
AGCTGAGGGAAACAGGAGAG+TGG 0.671817 1_2:-19034214 Msa0061060:CDS
AGAAACTGGATGTTCACAGG+AGG 0.686209 1_2:+19032775 None:intergenic
GAAGATGGTGATGGTCGACG+GGG 0.719959 1_2:+19034531 None:intergenic
TGCATGAGCGAAGATGGTGA+TGG 0.732147 1_2:+19034522 None:intergenic
TCCCAAGAACAAATCCATCG+TGG 0.736351 1_2:+19034265 None:intergenic
AGACGTAAAGAAGACCACGA+TGG 0.745068 1_2:-19034279 Msa0061060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTGAATAAATAATAAATAA+AGG + chr1_2:19034557-19034576 None:intergenic 10.0%
!! AATAATTGTAAATTACTTAA+GGG - chr1_2:19034748-19034767 Msa0061060:five_prime_UTR 10.0%
!!! TTTTTTTTTTTTTTGAATGA+AGG - chr1_2:19034845-19034864 Msa0061060:five_prime_UTR 10.0%
!! ACTGAATAAATAATAAATAA+AGG + chr1_2:19034557-19034576 None:intergenic 10.0%
!! AATAATTGTAAATTACTTAA+GGG - chr1_2:19034748-19034767 Msa0061060:five_prime_UTR 10.0%
!! ATTATAACATTATGATGAAT+AGG - chr1_2:19033081-19033100 Msa0061060:intron 15.0%
!!! TTGTTTTTTAAATAAGAAAC+TGG - chr1_2:19033516-19033535 Msa0061060:intron 15.0%
!! GAATAATTGTAAATTACTTA+AGG - chr1_2:19034747-19034766 Msa0061060:five_prime_UTR 15.0%
!! ATAATTGTAAATTACTTAAG+GGG - chr1_2:19034749-19034768 Msa0061060:five_prime_UTR 15.0%
!! ATTATAACATTATGATGAAT+AGG - chr1_2:19033081-19033100 Msa0061060:intron 15.0%
!!! TTGTTTTTTAAATAAGAAAC+TGG - chr1_2:19033516-19033535 Msa0061060:intron 15.0%
!! GAATAATTGTAAATTACTTA+AGG - chr1_2:19034747-19034766 Msa0061060:five_prime_UTR 15.0%
!! ATAATTGTAAATTACTTAAG+GGG - chr1_2:19034749-19034768 Msa0061060:five_prime_UTR 15.0%
!!! ATTAGTAATAAGAATGGATT+TGG + chr1_2:19032795-19032814 None:intergenic 20.0%
!!! CACTTTTAACATTATGAAAT+TGG + chr1_2:19033123-19033142 None:intergenic 20.0%
!! TGTTAAAGAGACAAAAAATA+CGG + chr1_2:19033369-19033388 None:intergenic 20.0%
!!! TATTTTTTGTCTCTTTAACA+AGG - chr1_2:19033369-19033388 Msa0061060:intron 20.0%
!! GACTTTCTTGAAAAAATAAT+TGG + chr1_2:19034170-19034189 None:intergenic 20.0%
!!! ATGTTGATAAATGAAAGAAT+GGG + chr1_2:19034452-19034471 None:intergenic 20.0%
!!! AATGTTGATAAATGAAAGAA+TGG + chr1_2:19034453-19034472 None:intergenic 20.0%
!! ATTTAATAGTAAAAACACGT+TGG - chr1_2:19034799-19034818 Msa0061060:five_prime_UTR 20.0%
!!! ATTAGTAATAAGAATGGATT+TGG + chr1_2:19032795-19032814 None:intergenic 20.0%
!!! CACTTTTAACATTATGAAAT+TGG + chr1_2:19033123-19033142 None:intergenic 20.0%
!! TGTTAAAGAGACAAAAAATA+CGG + chr1_2:19033369-19033388 None:intergenic 20.0%
!!! TATTTTTTGTCTCTTTAACA+AGG - chr1_2:19033369-19033388 Msa0061060:intron 20.0%
!! GACTTTCTTGAAAAAATAAT+TGG + chr1_2:19034170-19034189 None:intergenic 20.0%
!!! ATGTTGATAAATGAAAGAAT+GGG + chr1_2:19034452-19034471 None:intergenic 20.0%
!!! AATGTTGATAAATGAAAGAA+TGG + chr1_2:19034453-19034472 None:intergenic 20.0%
!! ATTTAATAGTAAAAACACGT+TGG - chr1_2:19034799-19034818 Msa0061060:five_prime_UTR 20.0%
! TATCATCTATTTATCCTGTT+CGG + chr1_2:19032644-19032663 None:intergenic 25.0%
! AGTTGCATTAGTAATAAGAA+TGG + chr1_2:19032801-19032820 None:intergenic 25.0%
! ATCAAAATCCAGAATGAAAT+TGG + chr1_2:19033148-19033167 None:intergenic 25.0%
!!! CATGTCTTTTGCTTTATTAT+AGG - chr1_2:19033399-19033418 Msa0061060:intron 25.0%
! AGATTATTACTTCTTACAAC+TGG + chr1_2:19033574-19033593 None:intergenic 25.0%
! GTTGTAAGAAGTAATAATCT+TGG - chr1_2:19033574-19033593 Msa0061060:intron 25.0%
! AAATAATTGGTCACACAATA+CGG + chr1_2:19034157-19034176 None:intergenic 25.0%
! AAGGAATAAAATGACTTTCT+TGG + chr1_2:19034350-19034369 None:intergenic 25.0%
!! TTGAATTGTAGCATATTTTG+CGG - chr1_2:19034475-19034494 Msa0061060:CDS 25.0%
! TTCAATCTACAAAAAGAAAC+TGG + chr1_2:19034726-19034745 None:intergenic 25.0%
! TATCATCTATTTATCCTGTT+CGG + chr1_2:19032644-19032663 None:intergenic 25.0%
! AGTTGCATTAGTAATAAGAA+TGG + chr1_2:19032801-19032820 None:intergenic 25.0%
! ATCAAAATCCAGAATGAAAT+TGG + chr1_2:19033148-19033167 None:intergenic 25.0%
!!! CATGTCTTTTGCTTTATTAT+AGG - chr1_2:19033399-19033418 Msa0061060:intron 25.0%
! AGATTATTACTTCTTACAAC+TGG + chr1_2:19033574-19033593 None:intergenic 25.0%
! GTTGTAAGAAGTAATAATCT+TGG - chr1_2:19033574-19033593 Msa0061060:intron 25.0%
! AAATAATTGGTCACACAATA+CGG + chr1_2:19034157-19034176 None:intergenic 25.0%
! AAGGAATAAAATGACTTTCT+TGG + chr1_2:19034350-19034369 None:intergenic 25.0%
!! TTGAATTGTAGCATATTTTG+CGG - chr1_2:19034475-19034494 Msa0061060:CDS 25.0%
! TTCAATCTACAAAAAGAAAC+TGG + chr1_2:19034726-19034745 None:intergenic 25.0%
!! ATAGAAGAAGTGTTGATAAG+AGG - chr1_2:19032661-19032680 Msa0061060:three_prime_UTR 30.0%
TAATAACTGTGAGCTATATC+AGG + chr1_2:19032688-19032707 None:intergenic 30.0%
! ATAAGTGAAGGTTTTTGCTT+TGG + chr1_2:19032890-19032909 None:intergenic 30.0%
!!! TTTTTGGAGCTTATAAGTGA+AGG + chr1_2:19032902-19032921 None:intergenic 30.0%
!! TAATGAAGTAGTGGAGTTTT+TGG + chr1_2:19032918-19032937 None:intergenic 30.0%
ATTATAGGTGATTATGAGTG+AGG - chr1_2:19033414-19033433 Msa0061060:intron 30.0%
!! TTTTGTTTGGAGAAAAGCAA+TGG + chr1_2:19033646-19033665 None:intergenic 30.0%
!!! ACTTCAGAGTAAGTTTTGTT+TGG + chr1_2:19033659-19033678 None:intergenic 30.0%
!! ACAAAACTTACTCTGAAGTT+TGG - chr1_2:19033660-19033679 Msa0061060:intron 30.0%
AAGGATGATACTTTCAAACT+AGG + chr1_2:19033726-19033745 None:intergenic 30.0%
!! TAGTTTGAAAGTATCATCCT+TGG - chr1_2:19033725-19033744 Msa0061060:intron 30.0%
!! AGTTTGAAAGTATCATCCTT+GGG - chr1_2:19033726-19033745 Msa0061060:intron 30.0%
! TATCTAGTTCAAACACTACA+TGG - chr1_2:19033778-19033797 Msa0061060:intron 30.0%
ATGATGTCTCATATTGTTGA+GGG + chr1_2:19033868-19033887 None:intergenic 30.0%
!! TTTTCAAGAAAGTCAGATCA+AGG - chr1_2:19034176-19034195 Msa0061060:CDS 30.0%
!! ATAGAAGAAGTGTTGATAAG+AGG - chr1_2:19032661-19032680 Msa0061060:three_prime_UTR 30.0%
TAATAACTGTGAGCTATATC+AGG + chr1_2:19032688-19032707 None:intergenic 30.0%
! ATAAGTGAAGGTTTTTGCTT+TGG + chr1_2:19032890-19032909 None:intergenic 30.0%
!!! TTTTTGGAGCTTATAAGTGA+AGG + chr1_2:19032902-19032921 None:intergenic 30.0%
!! TAATGAAGTAGTGGAGTTTT+TGG + chr1_2:19032918-19032937 None:intergenic 30.0%
ATTATAGGTGATTATGAGTG+AGG - chr1_2:19033414-19033433 Msa0061060:intron 30.0%
!! TTTTGTTTGGAGAAAAGCAA+TGG + chr1_2:19033646-19033665 None:intergenic 30.0%
!!! ACTTCAGAGTAAGTTTTGTT+TGG + chr1_2:19033659-19033678 None:intergenic 30.0%
!! ACAAAACTTACTCTGAAGTT+TGG - chr1_2:19033660-19033679 Msa0061060:intron 30.0%
AAGGATGATACTTTCAAACT+AGG + chr1_2:19033726-19033745 None:intergenic 30.0%
!! TAGTTTGAAAGTATCATCCT+TGG - chr1_2:19033725-19033744 Msa0061060:intron 30.0%
!! AGTTTGAAAGTATCATCCTT+GGG - chr1_2:19033726-19033745 Msa0061060:intron 30.0%
! TATCTAGTTCAAACACTACA+TGG - chr1_2:19033778-19033797 Msa0061060:intron 30.0%
ATGATGTCTCATATTGTTGA+GGG + chr1_2:19033868-19033887 None:intergenic 30.0%
!! TTTTCAAGAAAGTCAGATCA+AGG - chr1_2:19034176-19034195 Msa0061060:CDS 30.0%
CATAAGCAAAACATTGCAGA+GGG + chr1_2:19032755-19032774 None:intergenic 35.0%
!!! TTTTTGCTTTGGAGGAAGAT+TGG + chr1_2:19032879-19032898 None:intergenic 35.0%
! AAAGTGCTCCAATTTCATTC+TGG - chr1_2:19033137-19033156 Msa0061060:intron 35.0%
TTCTTGGGACAAGTATTTGA+AGG - chr1_2:19033233-19033252 Msa0061060:intron 35.0%
TCTTGGGACAAGTATTTGAA+GGG - chr1_2:19033234-19033253 Msa0061060:intron 35.0%
AGATCTTGTTCTTAATCCCA+AGG + chr1_2:19033745-19033764 None:intergenic 35.0%
GAACAAGATCTACAAGTCTT+TGG - chr1_2:19033754-19033773 Msa0061060:intron 35.0%
GATGATGTCTCATATTGTTG+AGG + chr1_2:19033869-19033888 None:intergenic 35.0%
TTCAAGTGTAATGTAGACAC+AGG + chr1_2:19033973-19033992 None:intergenic 35.0%
TGTGTCTACATTACACTTGA+AGG - chr1_2:19033972-19033991 Msa0061060:intron 35.0%
TTACACTTGAAGGATCATGA+TGG - chr1_2:19033982-19034001 Msa0061060:intron 35.0%
ATTTGAGGGCTTACTACAAA+GGG + chr1_2:19034120-19034139 None:intergenic 35.0%
AATTTGAGGGCTTACTACAA+AGG + chr1_2:19034121-19034140 None:intergenic 35.0%
AGGAATCTGCTAGAATTTGA+GGG + chr1_2:19034134-19034153 None:intergenic 35.0%
! GACAAACATCCAAACTGTTT+TGG - chr1_2:19034309-19034328 Msa0061060:intron 35.0%
GCTAATGGTAGAGATATGAA+AGG + chr1_2:19034369-19034388 None:intergenic 35.0%
TTATCTTGAGGATTTCCTAC+AGG + chr1_2:19034395-19034414 None:intergenic 35.0%
AGGAAATCCTCAAGATAACT+TGG - chr1_2:19034397-19034416 Msa0061060:intron 35.0%
AAATCCTCAAGATAACTTGG+AGG - chr1_2:19034400-19034419 Msa0061060:intron 35.0%
AATCCTCAAGATAACTTGGA+GGG - chr1_2:19034401-19034420 Msa0061060:intron 35.0%
TCAGTGATTTAAACTGTTGC+AGG - chr1_2:19034572-19034591 Msa0061060:CDS 35.0%
ATTTAAACTGTTGCAGGAAG+AGG - chr1_2:19034578-19034597 Msa0061060:CDS 35.0%
TTCTGGTGTTTGCATTTCAA+TGG - chr1_2:19034603-19034622 Msa0061060:CDS 35.0%
TTCAATGGATGATGCCAATT+TGG - chr1_2:19034618-19034637 Msa0061060:CDS 35.0%
TCAATGGATGATGCCAATTT+GGG - chr1_2:19034619-19034638 Msa0061060:CDS 35.0%
ATATCCTTCCTAATAGCTTC+TGG - chr1_2:19034644-19034663 Msa0061060:CDS 35.0%
AAAAGAAACTGGATGTTCAC+AGG + chr1_2:19034715-19034734 None:intergenic 35.0%
CATAAGCAAAACATTGCAGA+GGG + chr1_2:19032755-19032774 None:intergenic 35.0%
!!! TTTTTGCTTTGGAGGAAGAT+TGG + chr1_2:19032879-19032898 None:intergenic 35.0%
! AAAGTGCTCCAATTTCATTC+TGG - chr1_2:19033137-19033156 Msa0061060:intron 35.0%
TTCTTGGGACAAGTATTTGA+AGG - chr1_2:19033233-19033252 Msa0061060:intron 35.0%
TCTTGGGACAAGTATTTGAA+GGG - chr1_2:19033234-19033253 Msa0061060:intron 35.0%
AGATCTTGTTCTTAATCCCA+AGG + chr1_2:19033745-19033764 None:intergenic 35.0%
GAACAAGATCTACAAGTCTT+TGG - chr1_2:19033754-19033773 Msa0061060:intron 35.0%
GATGATGTCTCATATTGTTG+AGG + chr1_2:19033869-19033888 None:intergenic 35.0%
TTCAAGTGTAATGTAGACAC+AGG + chr1_2:19033973-19033992 None:intergenic 35.0%
TGTGTCTACATTACACTTGA+AGG - chr1_2:19033972-19033991 Msa0061060:intron 35.0%
TTACACTTGAAGGATCATGA+TGG - chr1_2:19033982-19034001 Msa0061060:intron 35.0%
ATTTGAGGGCTTACTACAAA+GGG + chr1_2:19034120-19034139 None:intergenic 35.0%
AATTTGAGGGCTTACTACAA+AGG + chr1_2:19034121-19034140 None:intergenic 35.0%
AGGAATCTGCTAGAATTTGA+GGG + chr1_2:19034134-19034153 None:intergenic 35.0%
! GACAAACATCCAAACTGTTT+TGG - chr1_2:19034309-19034328 Msa0061060:intron 35.0%
GCTAATGGTAGAGATATGAA+AGG + chr1_2:19034369-19034388 None:intergenic 35.0%
TTATCTTGAGGATTTCCTAC+AGG + chr1_2:19034395-19034414 None:intergenic 35.0%
AGGAAATCCTCAAGATAACT+TGG - chr1_2:19034397-19034416 Msa0061060:intron 35.0%
AAATCCTCAAGATAACTTGG+AGG - chr1_2:19034400-19034419 Msa0061060:intron 35.0%
AATCCTCAAGATAACTTGGA+GGG - chr1_2:19034401-19034420 Msa0061060:intron 35.0%
TCAGTGATTTAAACTGTTGC+AGG - chr1_2:19034572-19034591 Msa0061060:CDS 35.0%
ATTTAAACTGTTGCAGGAAG+AGG - chr1_2:19034578-19034597 Msa0061060:CDS 35.0%
TTCTGGTGTTTGCATTTCAA+TGG - chr1_2:19034603-19034622 Msa0061060:CDS 35.0%
TTCAATGGATGATGCCAATT+TGG - chr1_2:19034618-19034637 Msa0061060:CDS 35.0%
TCAATGGATGATGCCAATTT+GGG - chr1_2:19034619-19034638 Msa0061060:CDS 35.0%
ATATCCTTCCTAATAGCTTC+TGG - chr1_2:19034644-19034663 Msa0061060:CDS 35.0%
AAAAGAAACTGGATGTTCAC+AGG + chr1_2:19034715-19034734 None:intergenic 35.0%
GCATAAGCAAAACATTGCAG+AGG + chr1_2:19032756-19032775 None:intergenic 40.0%
!! TTGGTTTGTTTGGGTGAAGA+AGG + chr1_2:19032860-19032879 None:intergenic 40.0%
!! GGAGGAAGATTGGTTTGTTT+GGG + chr1_2:19032869-19032888 None:intergenic 40.0%
!! TGGAGGAAGATTGGTTTGTT+TGG + chr1_2:19032870-19032889 None:intergenic 40.0%
! AGTGAAGGTTTTTGCTTTGG+AGG + chr1_2:19032887-19032906 None:intergenic 40.0%
GTTTGGAGGTAATGAAGTAG+TGG + chr1_2:19032927-19032946 None:intergenic 40.0%
TCAATTTGCATGAGCGAAGA+TGG + chr1_2:19032971-19032990 None:intergenic 40.0%
AAACAGACAGAGCATACTTG+AGG + chr1_2:19033036-19033055 None:intergenic 40.0%
! ACCACGATGGATTTGTTCTT+GGG - chr1_2:19033218-19033237 Msa0061060:intron 40.0%
! TTGCTACTTACTGGTGTTAG+TGG + chr1_2:19033327-19033346 None:intergenic 40.0%
ACAGAATTGGTGAGAACCTT+TGG + chr1_2:19033943-19033962 None:intergenic 40.0%
TTTGACCATTGTCCAACCAA+GGG - chr1_2:19034045-19034064 Msa0061060:intron 40.0%
TTTGAGGGCTTACTACAAAG+GGG + chr1_2:19034119-19034138 None:intergenic 40.0%
GAGGAATCTGCTAGAATTTG+AGG + chr1_2:19034135-19034154 None:intergenic 40.0%
TAATTGGTCACACAATACGG+AGG + chr1_2:19034154-19034173 None:intergenic 40.0%
GTCAGATCAAGGAAAATACC+TGG - chr1_2:19034187-19034206 Msa0061060:CDS 40.0%
ATGTTGTCGAGGAATGTTCA+AGG + chr1_2:19034213-19034232 None:intergenic 40.0%
ACCTTCAACATAGCAATTCC+TGG + chr1_2:19034273-19034292 None:intergenic 40.0%
!!! ACATCCAAACTGTTTTGGCA+TGG - chr1_2:19034314-19034333 Msa0061060:intron 40.0%
CTATCCATGCCAAAACAGTT+TGG + chr1_2:19034321-19034340 None:intergenic 40.0%
! ATTTCCTACAGGTTGGCTAA+TGG + chr1_2:19034384-19034403 None:intergenic 40.0%
ATACCCTCCAAGTTATCTTG+AGG + chr1_2:19034407-19034426 None:intergenic 40.0%
AGGAAGGATATAGCCCAAAT+TGG + chr1_2:19034635-19034654 None:intergenic 40.0%
TGATGACTCCAGAAGCTATT+AGG + chr1_2:19034655-19034674 None:intergenic 40.0%
TCAAGAAAAGGGACACTGAA+TGG + chr1_2:19034683-19034702 None:intergenic 40.0%
GCATAAGCAAAACATTGCAG+AGG + chr1_2:19032756-19032775 None:intergenic 40.0%
!! TTGGTTTGTTTGGGTGAAGA+AGG + chr1_2:19032860-19032879 None:intergenic 40.0%
!! GGAGGAAGATTGGTTTGTTT+GGG + chr1_2:19032869-19032888 None:intergenic 40.0%
!! TGGAGGAAGATTGGTTTGTT+TGG + chr1_2:19032870-19032889 None:intergenic 40.0%
! AGTGAAGGTTTTTGCTTTGG+AGG + chr1_2:19032887-19032906 None:intergenic 40.0%
GTTTGGAGGTAATGAAGTAG+TGG + chr1_2:19032927-19032946 None:intergenic 40.0%
TCAATTTGCATGAGCGAAGA+TGG + chr1_2:19032971-19032990 None:intergenic 40.0%
AAACAGACAGAGCATACTTG+AGG + chr1_2:19033036-19033055 None:intergenic 40.0%
! ACCACGATGGATTTGTTCTT+GGG - chr1_2:19033218-19033237 Msa0061060:intron 40.0%
! TTGCTACTTACTGGTGTTAG+TGG + chr1_2:19033327-19033346 None:intergenic 40.0%
ACAGAATTGGTGAGAACCTT+TGG + chr1_2:19033943-19033962 None:intergenic 40.0%
TTTGACCATTGTCCAACCAA+GGG - chr1_2:19034045-19034064 Msa0061060:intron 40.0%
TTTGAGGGCTTACTACAAAG+GGG + chr1_2:19034119-19034138 None:intergenic 40.0%
GAGGAATCTGCTAGAATTTG+AGG + chr1_2:19034135-19034154 None:intergenic 40.0%
TAATTGGTCACACAATACGG+AGG + chr1_2:19034154-19034173 None:intergenic 40.0%
GTCAGATCAAGGAAAATACC+TGG - chr1_2:19034187-19034206 Msa0061060:CDS 40.0%
ATGTTGTCGAGGAATGTTCA+AGG + chr1_2:19034213-19034232 None:intergenic 40.0%
ACCTTCAACATAGCAATTCC+TGG + chr1_2:19034273-19034292 None:intergenic 40.0%
!!! ACATCCAAACTGTTTTGGCA+TGG - chr1_2:19034314-19034333 Msa0061060:intron 40.0%
CTATCCATGCCAAAACAGTT+TGG + chr1_2:19034321-19034340 None:intergenic 40.0%
! ATTTCCTACAGGTTGGCTAA+TGG + chr1_2:19034384-19034403 None:intergenic 40.0%
ATACCCTCCAAGTTATCTTG+AGG + chr1_2:19034407-19034426 None:intergenic 40.0%
AGGAAGGATATAGCCCAAAT+TGG + chr1_2:19034635-19034654 None:intergenic 40.0%
TGATGACTCCAGAAGCTATT+AGG + chr1_2:19034655-19034674 None:intergenic 40.0%
TCAAGAAAAGGGACACTGAA+TGG + chr1_2:19034683-19034702 None:intergenic 40.0%
! AGGAGGAGAATCTGGGTTTT+GGG + chr1_2:19032828-19032847 None:intergenic 45.0%
GTTTGTTTGGGTGAAGAAGG+AGG + chr1_2:19032857-19032876 None:intergenic 45.0%
ATGCAAATTGAACGTGCCCT+TGG - chr1_2:19032980-19032999 Msa0061060:intron 45.0%
AGACGTAAAGAAGACCACGA+TGG - chr1_2:19033205-19033224 Msa0061060:intron 45.0%
! GACCACGATGGATTTGTTCT+TGG - chr1_2:19033217-19033236 Msa0061060:intron 45.0%
TCCCAAGAACAAATCCATCG+TGG + chr1_2:19033222-19033241 None:intergenic 45.0%
GACTGTGCAGAAAAAGCTGA+GGG - chr1_2:19033256-19033275 Msa0061060:intron 45.0%
CAGAAAAAGCTGAGGGAAAC+AGG - chr1_2:19033263-19033282 Msa0061060:intron 45.0%
ACCAGTAAGTAGCAAGCAAC+TGG - chr1_2:19033332-19033351 Msa0061060:intron 45.0%
! ACCAGTTGCTTGCTACTTAC+TGG + chr1_2:19033336-19033355 None:intergenic 45.0%
ACGAGGCCTTTGCTAAATTG+TGG - chr1_2:19033613-19033632 Msa0061060:intron 45.0%
CGAGGCCTTTGCTAAATTGT+GGG - chr1_2:19033614-19033633 Msa0061060:intron 45.0%
TTGGAGAAAAGCAATGGACG+AGG + chr1_2:19033640-19033659 None:intergenic 45.0%
ATTGTTGAGGGAGAGGCAAT+AGG + chr1_2:19033856-19033875 None:intergenic 45.0%
GTCTCATATTGTTGAGGGAG+AGG + chr1_2:19033863-19033882 None:intergenic 45.0%
TTCCAGATGCAAAGTTGAGC+AGG - chr1_2:19034022-19034041 Msa0061060:intron 45.0%
AACCTGCTCAACTTTGCATC+TGG + chr1_2:19034027-19034046 None:intergenic 45.0%
GTTTGACCATTGTCCAACCA+AGG - chr1_2:19034044-19034063 Msa0061060:intron 45.0%
TTGACCATTGTCCAACCAAG+GGG - chr1_2:19034046-19034065 Msa0061060:intron 45.0%
! AATTTAAGACCCCCCTTGGT+TGG + chr1_2:19034060-19034079 None:intergenic 45.0%
AACCAAGGGGGGTCTTAAAT+TGG - chr1_2:19034059-19034078 Msa0061060:intron 45.0%
ACCAAGGGGGGTCTTAAATT+GGG - chr1_2:19034060-19034079 Msa0061060:intron 45.0%
TTCCTCGACAACATAGCATC+CGG - chr1_2:19034219-19034238 Msa0061060:CDS 45.0%
CTCAAGGTTTATCATGCACC+CGG + chr1_2:19034241-19034260 None:intergenic 45.0%
GCCAGGAATTGCTATGTTGA+AGG - chr1_2:19034269-19034288 Msa0061060:CDS 45.0%
TCTACCATTAGCCAACCTGT+AGG - chr1_2:19034377-19034396 Msa0061060:intron 45.0%
CTTGAGGATTTCCTACAGGT+TGG + chr1_2:19034391-19034410 None:intergenic 45.0%
TGTTGCAGGAAGAGGAATTC+TGG - chr1_2:19034586-19034605 Msa0061060:CDS 45.0%
GACTCCAGAAGCTATTAGGA+AGG + chr1_2:19034651-19034670 None:intergenic 45.0%
GGAGGAGGTCATCAAGAAAA+GGG + chr1_2:19034694-19034713 None:intergenic 45.0%
AGGAGGAGGTCATCAAGAAA+AGG + chr1_2:19034695-19034714 None:intergenic 45.0%
AGAAACTGGATGTTCACAGG+AGG + chr1_2:19034712-19034731 None:intergenic 45.0%
! AGGAGGAGAATCTGGGTTTT+GGG + chr1_2:19032828-19032847 None:intergenic 45.0%
GTTTGTTTGGGTGAAGAAGG+AGG + chr1_2:19032857-19032876 None:intergenic 45.0%
ATGCAAATTGAACGTGCCCT+TGG - chr1_2:19032980-19032999 Msa0061060:intron 45.0%
AGACGTAAAGAAGACCACGA+TGG - chr1_2:19033205-19033224 Msa0061060:intron 45.0%
! GACCACGATGGATTTGTTCT+TGG - chr1_2:19033217-19033236 Msa0061060:intron 45.0%
TCCCAAGAACAAATCCATCG+TGG + chr1_2:19033222-19033241 None:intergenic 45.0%
GACTGTGCAGAAAAAGCTGA+GGG - chr1_2:19033256-19033275 Msa0061060:intron 45.0%
CAGAAAAAGCTGAGGGAAAC+AGG - chr1_2:19033263-19033282 Msa0061060:intron 45.0%
ACCAGTAAGTAGCAAGCAAC+TGG - chr1_2:19033332-19033351 Msa0061060:intron 45.0%
! ACCAGTTGCTTGCTACTTAC+TGG + chr1_2:19033336-19033355 None:intergenic 45.0%
ACGAGGCCTTTGCTAAATTG+TGG - chr1_2:19033613-19033632 Msa0061060:intron 45.0%
CGAGGCCTTTGCTAAATTGT+GGG - chr1_2:19033614-19033633 Msa0061060:intron 45.0%
TTGGAGAAAAGCAATGGACG+AGG + chr1_2:19033640-19033659 None:intergenic 45.0%
ATTGTTGAGGGAGAGGCAAT+AGG + chr1_2:19033856-19033875 None:intergenic 45.0%
GTCTCATATTGTTGAGGGAG+AGG + chr1_2:19033863-19033882 None:intergenic 45.0%
TTCCAGATGCAAAGTTGAGC+AGG - chr1_2:19034022-19034041 Msa0061060:intron 45.0%
AACCTGCTCAACTTTGCATC+TGG + chr1_2:19034027-19034046 None:intergenic 45.0%
GTTTGACCATTGTCCAACCA+AGG - chr1_2:19034044-19034063 Msa0061060:intron 45.0%
TTGACCATTGTCCAACCAAG+GGG - chr1_2:19034046-19034065 Msa0061060:intron 45.0%
! AATTTAAGACCCCCCTTGGT+TGG + chr1_2:19034060-19034079 None:intergenic 45.0%
AACCAAGGGGGGTCTTAAAT+TGG - chr1_2:19034059-19034078 Msa0061060:intron 45.0%
ACCAAGGGGGGTCTTAAATT+GGG - chr1_2:19034060-19034079 Msa0061060:intron 45.0%
TTCCTCGACAACATAGCATC+CGG - chr1_2:19034219-19034238 Msa0061060:CDS 45.0%
CTCAAGGTTTATCATGCACC+CGG + chr1_2:19034241-19034260 None:intergenic 45.0%
GCCAGGAATTGCTATGTTGA+AGG - chr1_2:19034269-19034288 Msa0061060:CDS 45.0%
TCTACCATTAGCCAACCTGT+AGG - chr1_2:19034377-19034396 Msa0061060:intron 45.0%
CTTGAGGATTTCCTACAGGT+TGG + chr1_2:19034391-19034410 None:intergenic 45.0%
TGTTGCAGGAAGAGGAATTC+TGG - chr1_2:19034586-19034605 Msa0061060:CDS 45.0%
GACTCCAGAAGCTATTAGGA+AGG + chr1_2:19034651-19034670 None:intergenic 45.0%
GGAGGAGGTCATCAAGAAAA+GGG + chr1_2:19034694-19034713 None:intergenic 45.0%
AGGAGGAGGTCATCAAGAAA+AGG + chr1_2:19034695-19034714 None:intergenic 45.0%
AGAAACTGGATGTTCACAGG+AGG + chr1_2:19034712-19034731 None:intergenic 45.0%
! GGAGGAGAATCTGGGTTTTG+GGG + chr1_2:19032827-19032846 None:intergenic 50.0%
! GAGGAGGAGAATCTGGGTTT+TGG + chr1_2:19032829-19032848 None:intergenic 50.0%
TGTTTGGGTGAAGAAGGAGG+AGG + chr1_2:19032854-19032873 None:intergenic 50.0%
TGCATGAGCGAAGATGGTGA+TGG + chr1_2:19032965-19032984 None:intergenic 50.0%
GACAGAGCATACTTGAGGTC+AGG + chr1_2:19033031-19033050 None:intergenic 50.0%
GGACTGTGCAGAAAAAGCTG+AGG - chr1_2:19033255-19033274 Msa0061060:intron 50.0%
GAGAGTGGCTGGGTGAAAAT+GGG - chr1_2:19033285-19033304 Msa0061060:intron 50.0%
AGAGTGGCTGGGTGAAAATG+GGG - chr1_2:19033286-19033305 Msa0061060:intron 50.0%
GGTGTTAGTGGAGCGAAATC+TGG + chr1_2:19033315-19033334 None:intergenic 50.0%
! GAGACTAGCTGATGAAGACG+AGG - chr1_2:19033596-19033615 Msa0061060:intron 50.0%
CGAGGCCCACAATTTAGCAA+AGG + chr1_2:19033622-19033641 None:intergenic 50.0%
!! TTGTGTTGGGTGGTTGGCTT+GGG + chr1_2:19033815-19033834 None:intergenic 50.0%
! ATTGTGTTGGGTGGTTGGCT+TGG + chr1_2:19033816-19033835 None:intergenic 50.0%
CAACCACCCAACACAATGCA+GGG - chr1_2:19033819-19033838 Msa0061060:intron 50.0%
AGAGGCAATAGGTCTGCTGA+CGG + chr1_2:19033845-19033864 None:intergenic 50.0%
AGTGCGTCAGAGAAGAGACA+CGG + chr1_2:19033918-19033937 None:intergenic 50.0%
TTCTCTGACGCACTTGCCAA+AGG - chr1_2:19033924-19033943 Msa0061060:intron 50.0%
CACAGGCTGCAACACAGAAT+TGG + chr1_2:19033956-19033975 None:intergenic 50.0%
TGACCATTGTCCAACCAAGG+GGG - chr1_2:19034047-19034066 Msa0061060:intron 50.0%
! TCCCAATTTAAGACCCCCCT+TGG + chr1_2:19034064-19034083 None:intergenic 50.0%
TCCTCGACAACATAGCATCC+GGG - chr1_2:19034220-19034239 Msa0061060:CDS 50.0%
CGGGTGCATGATAAACCTTG+AGG - chr1_2:19034239-19034258 Msa0061060:CDS 50.0%
! AACCTTGAGGCTTGTTTGCC+AGG - chr1_2:19034252-19034271 Msa0061060:CDS 50.0%
TTCCTGGCAAACAAGCCTCA+AGG + chr1_2:19034257-19034276 None:intergenic 50.0%
AACTGGATGTTCACAGGAGG+AGG + chr1_2:19034709-19034728 None:intergenic 50.0%
! GGAGGAGAATCTGGGTTTTG+GGG + chr1_2:19032827-19032846 None:intergenic 50.0%
! GAGGAGGAGAATCTGGGTTT+TGG + chr1_2:19032829-19032848 None:intergenic 50.0%
TGTTTGGGTGAAGAAGGAGG+AGG + chr1_2:19032854-19032873 None:intergenic 50.0%
TGCATGAGCGAAGATGGTGA+TGG + chr1_2:19032965-19032984 None:intergenic 50.0%
GACAGAGCATACTTGAGGTC+AGG + chr1_2:19033031-19033050 None:intergenic 50.0%
GGACTGTGCAGAAAAAGCTG+AGG - chr1_2:19033255-19033274 Msa0061060:intron 50.0%
GAGAGTGGCTGGGTGAAAAT+GGG - chr1_2:19033285-19033304 Msa0061060:intron 50.0%
AGAGTGGCTGGGTGAAAATG+GGG - chr1_2:19033286-19033305 Msa0061060:intron 50.0%
GGTGTTAGTGGAGCGAAATC+TGG + chr1_2:19033315-19033334 None:intergenic 50.0%
! GAGACTAGCTGATGAAGACG+AGG - chr1_2:19033596-19033615 Msa0061060:intron 50.0%
CGAGGCCCACAATTTAGCAA+AGG + chr1_2:19033622-19033641 None:intergenic 50.0%
!! TTGTGTTGGGTGGTTGGCTT+GGG + chr1_2:19033815-19033834 None:intergenic 50.0%
! ATTGTGTTGGGTGGTTGGCT+TGG + chr1_2:19033816-19033835 None:intergenic 50.0%
CAACCACCCAACACAATGCA+GGG - chr1_2:19033819-19033838 Msa0061060:intron 50.0%
AGAGGCAATAGGTCTGCTGA+CGG + chr1_2:19033845-19033864 None:intergenic 50.0%
AGTGCGTCAGAGAAGAGACA+CGG + chr1_2:19033918-19033937 None:intergenic 50.0%
TTCTCTGACGCACTTGCCAA+AGG - chr1_2:19033924-19033943 Msa0061060:intron 50.0%
CACAGGCTGCAACACAGAAT+TGG + chr1_2:19033956-19033975 None:intergenic 50.0%
TGACCATTGTCCAACCAAGG+GGG - chr1_2:19034047-19034066 Msa0061060:intron 50.0%
! TCCCAATTTAAGACCCCCCT+TGG + chr1_2:19034064-19034083 None:intergenic 50.0%
TCCTCGACAACATAGCATCC+GGG - chr1_2:19034220-19034239 Msa0061060:CDS 50.0%
CGGGTGCATGATAAACCTTG+AGG - chr1_2:19034239-19034258 Msa0061060:CDS 50.0%
! AACCTTGAGGCTTGTTTGCC+AGG - chr1_2:19034252-19034271 Msa0061060:CDS 50.0%
TTCCTGGCAAACAAGCCTCA+AGG + chr1_2:19034257-19034276 None:intergenic 50.0%
AACTGGATGTTCACAGGAGG+AGG + chr1_2:19034709-19034728 None:intergenic 50.0%
GAGGAGGAGGAGGAGAATCT+GGG + chr1_2:19032835-19032854 None:intergenic 55.0%
TTGGGTGAAGAAGGAGGAGG+AGG + chr1_2:19032851-19032870 None:intergenic 55.0%
!! GAAGATGGTGATGGTCGACG+GGG + chr1_2:19032956-19032975 None:intergenic 55.0%
!! CGAAGATGGTGATGGTCGAC+GGG + chr1_2:19032957-19032976 None:intergenic 55.0%
!! GCGAAGATGGTGATGGTCGA+CGG + chr1_2:19032958-19032977 None:intergenic 55.0%
! TCTGAAGCTACCAGCGCCAA+GGG + chr1_2:19032999-19033018 None:intergenic 55.0%
AGCTGAGGGAAACAGGAGAG+TGG - chr1_2:19033270-19033289 Msa0061060:intron 55.0%
AGGGAAACAGGAGAGTGGCT+GGG - chr1_2:19033275-19033294 Msa0061060:intron 55.0%
GGAGAGTGGCTGGGTGAAAA+TGG - chr1_2:19033284-19033303 Msa0061060:intron 55.0%
CCTGCATTGTGTTGGGTGGT+TGG + chr1_2:19033821-19033840 None:intergenic 55.0%
CCAACCACCCAACACAATGC+AGG - chr1_2:19033818-19033837 Msa0061060:intron 55.0%
TGACGGCCCTGCATTGTGTT+GGG + chr1_2:19033828-19033847 None:intergenic 55.0%
GACCATTGTCCAACCAAGGG+GGG - chr1_2:19034048-19034067 Msa0061060:intron 55.0%
GTCGAGGAATGTTCAAGGCC+AGG + chr1_2:19034208-19034227 None:intergenic 55.0%
ACCCGGATGCTATGTTGTCG+AGG + chr1_2:19034224-19034243 None:intergenic 55.0%
GAGGAGGAGGAGGAGAATCT+GGG + chr1_2:19032835-19032854 None:intergenic 55.0%
TTGGGTGAAGAAGGAGGAGG+AGG + chr1_2:19032851-19032870 None:intergenic 55.0%
!! GAAGATGGTGATGGTCGACG+GGG + chr1_2:19032956-19032975 None:intergenic 55.0%
!! CGAAGATGGTGATGGTCGAC+GGG + chr1_2:19032957-19032976 None:intergenic 55.0%
!! GCGAAGATGGTGATGGTCGA+CGG + chr1_2:19032958-19032977 None:intergenic 55.0%
! TCTGAAGCTACCAGCGCCAA+GGG + chr1_2:19032999-19033018 None:intergenic 55.0%
AGCTGAGGGAAACAGGAGAG+TGG - chr1_2:19033270-19033289 Msa0061060:intron 55.0%
AGGGAAACAGGAGAGTGGCT+GGG - chr1_2:19033275-19033294 Msa0061060:intron 55.0%
GGAGAGTGGCTGGGTGAAAA+TGG - chr1_2:19033284-19033303 Msa0061060:intron 55.0%
CCTGCATTGTGTTGGGTGGT+TGG + chr1_2:19033821-19033840 None:intergenic 55.0%
CCAACCACCCAACACAATGC+AGG - chr1_2:19033818-19033837 Msa0061060:intron 55.0%
TGACGGCCCTGCATTGTGTT+GGG + chr1_2:19033828-19033847 None:intergenic 55.0%
GACCATTGTCCAACCAAGGG+GGG - chr1_2:19034048-19034067 Msa0061060:intron 55.0%
GTCGAGGAATGTTCAAGGCC+AGG + chr1_2:19034208-19034227 None:intergenic 55.0%
ACCCGGATGCTATGTTGTCG+AGG + chr1_2:19034224-19034243 None:intergenic 55.0%
GGAGGAGGAGGAGGAGAATC+TGG + chr1_2:19032836-19032855 None:intergenic 60.0%
GAAGAAGGAGGAGGAGGAGG+AGG + chr1_2:19032845-19032864 None:intergenic 60.0%
GGTGAAGAAGGAGGAGGAGG+AGG + chr1_2:19032848-19032867 None:intergenic 60.0%
! CGACGGGGAAGCTTGTTTGG+AGG + chr1_2:19032941-19032960 None:intergenic 60.0%
! GGTCGACGGGGAAGCTTGTT+TGG + chr1_2:19032944-19032963 None:intergenic 60.0%
ATTGAACGTGCCCTTGGCGC+TGG - chr1_2:19032986-19033005 Msa0061060:intron 60.0%
!! CTCTGAAGCTACCAGCGCCA+AGG + chr1_2:19033000-19033019 None:intergenic 60.0%
!! GGCGCTGGTAGCTTCAGAGA+CGG - chr1_2:19033001-19033020 Msa0061060:intron 60.0%
GAGGGAAACAGGAGAGTGGC+TGG - chr1_2:19033274-19033293 Msa0061060:intron 60.0%
CTGACGGCCCTGCATTGTGT+TGG + chr1_2:19033829-19033848 None:intergenic 60.0%
GACCCCCCTTGGTTGGACAA+TGG + chr1_2:19034053-19034072 None:intergenic 60.0%
GGAGGAGGAGGAGGAGAATC+TGG + chr1_2:19032836-19032855 None:intergenic 60.0%
GAAGAAGGAGGAGGAGGAGG+AGG + chr1_2:19032845-19032864 None:intergenic 60.0%
GGTGAAGAAGGAGGAGGAGG+AGG + chr1_2:19032848-19032867 None:intergenic 60.0%
! CGACGGGGAAGCTTGTTTGG+AGG + chr1_2:19032941-19032960 None:intergenic 60.0%
! GGTCGACGGGGAAGCTTGTT+TGG + chr1_2:19032944-19032963 None:intergenic 60.0%
ATTGAACGTGCCCTTGGCGC+TGG - chr1_2:19032986-19033005 Msa0061060:intron 60.0%
!! CTCTGAAGCTACCAGCGCCA+AGG + chr1_2:19033000-19033019 None:intergenic 60.0%
!! GGCGCTGGTAGCTTCAGAGA+CGG - chr1_2:19033001-19033020 Msa0061060:intron 60.0%
GAGGGAAACAGGAGAGTGGC+TGG - chr1_2:19033274-19033293 Msa0061060:intron 60.0%
CTGACGGCCCTGCATTGTGT+TGG + chr1_2:19033829-19033848 None:intergenic 60.0%
GACCCCCCTTGGTTGGACAA+TGG + chr1_2:19034053-19034072 None:intergenic 60.0%
CGGCCCTGCATTGTGTTGGG+TGG + chr1_2:19033825-19033844 None:intergenic 65.0%
CGGCCCTGCATTGTGTTGGG+TGG + chr1_2:19033825-19033844 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 19032640 19034866 19032640 ID=Msa0061060;Name=Msa0061060
chr1_2 mRNA 19032640 19034866 19032640 ID=Msa0061060-mRNA-1;Parent=Msa0061060;Name=Msa0061060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=121|1|1|1|1|1|3|148|182
chr1_2 exon 19032640 19032912 19032640 ID=Msa0061060-mRNA-1:exon:7384;Parent=Msa0061060-mRNA-1
chr1_2 exon 19034171 19034316 19034171 ID=Msa0061060-mRNA-1:exon:7383;Parent=Msa0061060-mRNA-1
chr1_2 exon 19034468 19034866 19034468 ID=Msa0061060-mRNA-1:exon:7382;Parent=Msa0061060-mRNA-1
chr1_2 five_prime_UTR 19034746 19034866 19034746 ID=Msa0061060-mRNA-1:five_prime_utr;Parent=Msa0061060-mRNA-1
chr1_2 CDS 19034468 19034745 19034468 ID=Msa0061060-mRNA-1:cds;Parent=Msa0061060-mRNA-1
chr1_2 CDS 19034171 19034316 19034171 ID=Msa0061060-mRNA-1:cds;Parent=Msa0061060-mRNA-1
chr1_2 CDS 19032788 19032912 19032788 ID=Msa0061060-mRNA-1:cds;Parent=Msa0061060-mRNA-1
chr1_2 three_prime_UTR 19032640 19032787 19032640 ID=Msa0061060-mRNA-1:three_prime_utr;Parent=Msa0061060-mRNA-1
Gene Sequence

>Msa0061060

ATGTTTTGCTTATGCAACAATCTTTCTATAACCAAATCCATTCTTATTACTAATGCAACTCTTCCCCAAAACCCAGATTCTCCTCCTCCTCCTCCTCCTTCTTCACCCAAACAAACCAATCTTCCTCCAAAGCAAAAACCTTCACTTATAAGCTCCAAAAACTCCACTACTTCATTACCTCCAAACAAGCTTCCCCGTCGACCATCACCATCTTCGCTCATGCAAATTGAACGTGCCCTTGGCGCTGGTAGCTTCAGAGACGGTGAACCTGACCTCAAAATGAAGAACGATTCAGACGTAAAGAAGACCACGATGGATTTGTTCTTGGGACAAGTATTTGAAGGGACTGTGCAGAAAAAGCTGAGGGAAACAGGAGAGTGGCTGGGTGAAAATGGGGAGACCAGATTTCGCTCCACTAACACCAGAAGAGGAATTCTGGTGTTTGCATTTCAATGGATGATGCCAATTTGGGCTATATCCTTCCTAATAGCTTCTGGAGTCATCAAATTACCATTCAGTGTCCCTTTTCTTGATGACCTCCTCCTGTGA

Protein sequence

>Msa0061060

MFCLCNNLSITKSILITNATLPQNPDSPPPPPPSSPKQTNLPPKQKPSLISSKNSTTSLPPNKLPRRPSPSSLMQIERALGAGSFRDGEPDLKMKNDSDVKKTTMDLFLGQVFEGTVQKKLRETGEWLGENGETRFRSTNTRRGILVFAFQWMMPIWAISFLIASGVIKLPFSVPFLDDLLL*