AlfalfaGEDB | Msa0285420

M. sativa cultivar zhongmu-4 / Msa0285420

KEGG: K00485
GO: GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542
PFAM: PF00743.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285420	XP_013463626.2	95.793	523	22	0	1	523	1	523	0.0	997

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285420	sp\|Q9LMA1\|FMO1_ARATH	61.793	513	194	2	9	520	8	519	0.0	698

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285420	A0A396JBD7	95.793	523	22	0	1	523	1	523	0.0	997

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006080	Msa0285420	0.808784	2.612611e-50	-8.615850e-47
Msa0007810	Msa0285420	-0.804486	2.111050e-49	-8.615850e-47
Msa0011060	Msa0285420	-0.804549	2.047708e-49	-8.615850e-47
Msa0011100	Msa0285420	-0.802457	5.558546e-49	-8.615850e-47
Msa0017300	Msa0285420	-0.808012	3.816415e-50	-8.615850e-47
Msa0021240	Msa0285420	-0.817478	3.229917e-52	-8.615850e-47
Msa0024500	Msa0285420	-0.807998	3.843637e-50	-8.615850e-47
Msa0024650	Msa0285420	0.805445	1.330222e-49	-8.615850e-47
Msa0025570	Msa0285420	0.827480	1.528236e-54	-8.615850e-47
Msa0028940	Msa0285420	-0.800018	1.754450e-48	-8.615850e-47

Showing 1 to 10 of 772 entries

Previous1 2 3 4 5…78Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285420	MtrunA17_Chr2g0301661	95.793	523	22	0	1	523	1	523	0.0	997
Msa0285420	MtrunA17_Chr2g0301471	92.352	523	40	0	1	523	1	523	0.0	949
Msa0285420	MtrunA17_Chr4g0070101	67.048	525	167	4	1	523	3	523	0.0	715
Msa0285420	MtrunA17_Chr4g0070111	74.113	282	73	0	242	523	1	282	7.52e-168	476
Msa0285420	MtrunA17_Chr2g0286701	82.479	234	41	0	1	234	1	234	1.91e-141	410
Msa0285420	MtrunA17_Chr2g0305211	39.961	513	298	7	14	519	5	514	6.55e-141	416
Msa0285420	MtrunA17_Chr2g0305231	39.961	513	298	7	14	519	5	514	6.55e-141	416
Msa0285420	MtrunA17_Chr2g0304721	41.910	513	287	8	13	519	4	511	8.06e-141	416
Msa0285420	MtrunA17_Chr2g0304651	39.147	516	298	8	13	519	4	512	3.64e-132	394
Msa0285420	MtrunA17_Chr4g0070121	62.857	210	75	2	27	234	29	237	8.61e-85	262

Showing 1 to 10 of 19 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285420	AT1G19250.1	61.793	513	194	2	9	520	8	519	0.0	698
Msa0285420	AT5G45180.1	56.082	485	173	4	12	496	11	455	0.0	575
Msa0285420	AT2G33230.1	27.202	386	190	20	16	381	34	348	1.39e-15	79.3
Msa0285420	AT1G04610.1	26.400	375	207	18	16	381	39	353	1.57e-14	76.3
Msa0285420	AT1G12200.1	27.027	259	134	8	1	231	1	232	3.05e-13	72.4
Msa0285420	AT1G12200.2	27.027	259	134	8	1	231	1	232	3.08e-13	72.0
Msa0285420	AT4G13260.2	25.703	249	145	10	16	262	30	240	3.21e-12	68.2
Msa0285420	AT4G13260.1	23.118	372	220	13	16	381	30	341	4.00e-12	68.6
Msa0285420	AT1G62620.2	24.291	247	133	8	14	233	13	232	4.95e-12	68.2
Msa0285420	AT1G62620.1	24.303	251	136	8	8	231	7	230	5.17e-12	68.6

Showing 1 to 10 of 17 entries

Previous1 2Next

Find 133 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGCTACAAACTCGAAG+TGG	0.642911	2_3:-25166077	None:intergenic
AAACTTCATTTCCACCACTT+TGG	0.481987	2_3:-25165240	None:intergenic
AAACTTCCGTTTGAGAAGTA+TGG	0.319264	2_3:+25169731	Msa0285420:CDS
AAATATGTGAAGATTTGGGT+TGG	0.584905	2_3:+25170557	Msa0285420:CDS
AACAAGCTACAGAAAGGCTC+AGG	0.566868	2_3:-25169983	None:intergenic
AACACCACCAATTGAATTAG+TGG	0.384296	2_3:-25165039	None:intergenic
AACCATGCACAATGATCATA+AGG	0.486955	2_3:+25168637	Msa0285420:CDS
AACCCTGATTTGGTGTTTGG+TGG	0.497741	2_3:-25168743	None:intergenic
AAGATTTGGGTTGGCATACT+TGG	0.370246	2_3:+25170566	Msa0285420:CDS
AAGCCACATGGAACGTATCT+CGG	0.538091	2_3:-25170389	None:intergenic

Showing 1 to 10 of 133 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CCAATTCTAGACACTATAAT+TGG	-	chr2_3:25164945-25164964	None:intergenic	30.0%
TAGTGGCTTCAAAAACAATA+GGG	-	chr2_3:25165025-25165044	None:intergenic	30.0%
TTAGTGGCTTCAAAAACAAT+AGG	-	chr2_3:25165026-25165045	None:intergenic	30.0%
TTCTGTCCAAACTAATGAAT+CGG	+	chr2_3:25165346-25165365	Msa0285420:CDS	30.0%
CATTGACAACATCAAAATAG+TGG	+	chr2_3:25165568-25165587	Msa0285420:intron	30.0%
AGACATGCATGTGTAAAAAT+TGG	+	chr2_3:25165673-25165692	Msa0285420:intron	30.0%
AATCATAATGCATACAAGTC+TGG	+	chr2_3:25166457-25166476	Msa0285420:intron	30.0%
AAAATCAAACGATTTCTTGG+AGG	-	chr2_3:25166779-25166798	None:intergenic	30.0%
TAGTGTTAACGAAATTGAGA+TGG	+	chr2_3:25166993-25167012	Msa0285420:intron	30.0%
AGAAAGGATACACATAAACT+CGG	+	chr2_3:25167041-25167060	Msa0285420:intron	30.0%

Showing 1 to 10 of 356 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	25164876	25170830	25164876	ID=Msa0285420;Name=Msa0285420
chr2_3	mRNA	25164876	25170830	25164876	ID=Msa0285420-mRNA-1;Parent=Msa0285420;Name=Msa0285420-mRNA-1;_AED=0.18;_eAED=0.18;_QI=45\|1\|1\|1\|1\|1\|5\|173\|523
chr2_3	exon	25164876	25165379	25164876	ID=Msa0285420-mRNA-1:exon:9366;Parent=Msa0285420-mRNA-1
chr2_3	exon	25166072	25166312	25166072	ID=Msa0285420-mRNA-1:exon:9367;Parent=Msa0285420-mRNA-1
chr2_3	exon	25168625	25168803	25168625	ID=Msa0285420-mRNA-1:exon:9368;Parent=Msa0285420-mRNA-1
chr2_3	exon	25169689	25170038	25169689	ID=Msa0285420-mRNA-1:exon:9369;Parent=Msa0285420-mRNA-1
chr2_3	exon	25170315	25170830	25170315	ID=Msa0285420-mRNA-1:exon:9370;Parent=Msa0285420-mRNA-1
chr2_3	five_prime_UTR	25164876	25164920	25164876	ID=Msa0285420-mRNA-1:five_prime_utr;Parent=Msa0285420-mRNA-1
chr2_3	CDS	25164921	25165379	25164921	ID=Msa0285420-mRNA-1:cds;Parent=Msa0285420-mRNA-1
chr2_3	CDS	25166072	25166312	25166072	ID=Msa0285420-mRNA-1:cds;Parent=Msa0285420-mRNA-1
chr2_3	CDS	25168625	25168803	25168625	ID=Msa0285420-mRNA-1:cds;Parent=Msa0285420-mRNA-1
chr2_3	CDS	25169689	25170038	25169689	ID=Msa0285420-mRNA-1:cds;Parent=Msa0285420-mRNA-1
chr2_3	CDS	25170315	25170657	25170315	ID=Msa0285420-mRNA-1:cds;Parent=Msa0285420-mRNA-1
chr2_3	three_prime_UTR	25170658	25170830	25170658	ID=Msa0285420-mRNA-1:three_prime_utr;Parent=Msa0285420-mRNA-1

Gene Sequence

>Msa0285420

ATGGCCACTCAAGGCAACTTACCAATTATAGTGTCTAGAATTGGCATCATAGGTGCTGGAGTGAGTGGTTTAGCCGTAGCAAAACAACTATCACACTACAACCCTATTGTTTTTGAAGCCACTAATTCAATTGGTGGTGTTTGGAGACATTGTTCCTATAGGTGTACTAAGCTTCAGTCACAAACATGGAATTATGAATTTAGTGATTTTCCATGGCCTAAAAGAGAGAGTACTGATTACCCTTCTCATGCTGAGATTTTGGAATACTTGCATATTTATGCTGTTCAATTTGATTTGTTCAAGTATGTTAAGTTCAACACCAAAGTGGTGGAAATGAAGTTTGTTCGGGACAAAGAAGGTTTTGATTTCGGACGTCTACCCAATGACCACGGAAATCCACTTCCTGGTCGTCCTGTGTGGGAGCTTTCTGTCCAAACTAATGAATCGGACGCAATTCAGCGGTACCACTTCGAGTTTGTAGCGGTTTGCACTGGAAAATATGGAGACATACCATTGATGCCAACATTTCCATGCAACAAGGGACCTGAGGTGTTCAAGGGTAAGGTTTTGCATAGCATTGATTATTGTAAACTTGACAAAGAAGCAACTAGTGACCTTGTTAAGGGAAAGAAGGTTGTGGTTGTGGGTTACAAAAAATCAGCTATTGATCTAGCCATGGAATGTGCACAGGCAAACCAAGGACCAGAAGGGCAACCATGCACAATGATCATAAGGAGTTTGCATTGGACACTTCCACATTATAGGATGTGGGGAGTACCATTTTTCATGTTCTATGCAACAAGATCCGCACAGTTCCTCCACCAAACACCAAATCAGGGTTTACTTAAAAGTCTTTTATGCCTCCTATTATCTCCAATGAGACGTGGGATTTCAAAGTTCATAGAGTCCTACTTGCTGTGGAAACTTCCGTTTGAGAAGTATGGATTGAAACCAGAACACCCATTTGAGGAAGATTTTGCATCTTGTCAAATAGCTATAACACCAGAGAGTTTTTTCAATGAGGCTGATAAGGGAAAAATAATCTTCAAAAGAGCATCAAAGTGGTGGTTTTGTAATGAAGGAATTGAATTTGATGACAACACTAAAATTGATGCTGATGTTGTTCTCCTTGCAACTGGTTATGATGGGAAAAAGAAGCTCAAAACACTTTTGCCTGAGCCTTTCTGTAGCTTGTTGGAATACCCTACTGGTACCATGCCACTATACAGGGGAACCGTCCATCCATCGATTCCAAACATGGCCTTTGTGGGTTATGTTGAGAGTGTTTCAAATCTTTACACATCCGAGATACGTTCCATGTGGCTTGCTGGTCTATTAGATAACAAATTTAAGCTTCCAAATGCTGAGAAAATGCTTTCACAAACAATTAAGGACATGGAAACAATGAAAAAGTCTACAAGGTTTTACAAAAGGAACTGCATCACAACATTTGGTATCAATCATAATGATGAAATATGTGAAGATTTGGGTTGGCATACTTGGAGGAAGAAGAACTTCATCAAAGAAGCATTTACTCCTTACACTGCTGGTGACTATAAGAAGAAAGATTGA

Protein sequence

>Msa0285420

MATQGNLPIIVSRIGIIGAGVSGLAVAKQLSHYNPIVFEATNSIGGVWRHCSYRCTKLQSQTWNYEFSDFPWPKRESTDYPSHAEILEYLHIYAVQFDLFKYVKFNTKVVEMKFVRDKEGFDFGRLPNDHGNPLPGRPVWELSVQTNESDAIQRYHFEFVAVCTGKYGDIPLMPTFPCNKGPEVFKGKVLHSIDYCKLDKEATSDLVKGKKVVVVGYKKSAIDLAMECAQANQGPEGQPCTMIIRSLHWTLPHYRMWGVPFFMFYATRSAQFLHQTPNQGLLKSLLCLLLSPMRRGISKFIESYLLWKLPFEKYGLKPEHPFEEDFASCQIAITPESFFNEADKGKIIFKRASKWWFCNEGIEFDDNTKIDADVVLLATGYDGKKKLKTLLPEPFCSLLEYPTGTMPLYRGTVHPSIPNMAFVGYVESVSNLYTSEIRSMWLAGLLDNKFKLPNAEKMLSQTIKDMETMKKSTRFYKRNCITTFGINHNDEICEDLGWHTWRKKNFIKEAFTPYTAGDYKKKD*