AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0285420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0285420 MtrunA17_Chr2g0301661 95.793 523 22 0 1 523 1 523 0.0 997
Msa0285420 MtrunA17_Chr2g0301471 92.352 523 40 0 1 523 1 523 0.0 949
Msa0285420 MtrunA17_Chr4g0070101 67.048 525 167 4 1 523 3 523 0.0 715
Msa0285420 MtrunA17_Chr4g0070111 74.113 282 73 0 242 523 1 282 7.52e-168 476
Msa0285420 MtrunA17_Chr2g0286701 82.479 234 41 0 1 234 1 234 1.91e-141 410
Msa0285420 MtrunA17_Chr2g0305211 39.961 513 298 7 14 519 5 514 6.55e-141 416
Msa0285420 MtrunA17_Chr2g0305231 39.961 513 298 7 14 519 5 514 6.55e-141 416
Msa0285420 MtrunA17_Chr2g0304721 41.910 513 287 8 13 519 4 511 8.06e-141 416
Msa0285420 MtrunA17_Chr2g0304651 39.147 516 298 8 13 519 4 512 3.64e-132 394
Msa0285420 MtrunA17_Chr4g0070121 62.857 210 75 2 27 234 29 237 8.61e-85 262
Msa0285420 MtrunA17_Chr2g0286671 88.462 104 12 0 420 523 1 104 2.28e-62 199
Msa0285420 MtrunA17_Chr2g0286681 70.796 113 32 1 284 395 5 117 4.13e-51 170
Msa0285420 MtrunA17_Chr2g0286691 72.059 68 19 0 233 300 10 77 2.37e-30 113
Msa0285420 MtrunA17_Chr1g0169111 25.916 382 219 16 6 381 94 417 1.04e-17 85.9
Msa0285420 MtrunA17_Chr8g0352481 27.686 242 117 8 13 229 3 211 2.94e-16 81.3
Msa0285420 MtrunA17_Chr1g0182991 25.946 370 211 16 16 381 27 337 2.49e-15 78.2
Msa0285420 MtrunA17_Chr2g0301651 90.909 33 3 0 420 452 1 33 4.60e-14 66.6
Msa0285420 MtrunA17_Chr3g0091441 29.167 240 121 9 14 227 13 229 8.54e-14 73.6
Msa0285420 MtrunA17_Chr7g0262591 24.895 474 268 19 16 484 26 416 1.07e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0285420 AT1G19250.1 61.793 513 194 2 9 520 8 519 0.0 698
Msa0285420 AT5G45180.1 56.082 485 173 4 12 496 11 455 0.0 575
Msa0285420 AT2G33230.1 27.202 386 190 20 16 381 34 348 1.39e-15 79.3
Msa0285420 AT1G04610.1 26.400 375 207 18 16 381 39 353 1.57e-14 76.3
Msa0285420 AT1G12200.1 27.027 259 134 8 1 231 1 232 3.05e-13 72.4
Msa0285420 AT1G12200.2 27.027 259 134 8 1 231 1 232 3.08e-13 72.0
Msa0285420 AT4G13260.2 25.703 249 145 10 16 262 30 240 3.21e-12 68.2
Msa0285420 AT4G13260.1 23.118 372 220 13 16 381 30 341 4.00e-12 68.6
Msa0285420 AT1G62620.2 24.291 247 133 8 14 233 13 232 4.95e-12 68.2
Msa0285420 AT1G62620.1 24.303 251 136 8 8 231 7 230 5.17e-12 68.6
Msa0285420 AT1G65860.1 26.587 252 123 12 9 231 8 226 8.71e-12 67.8
Msa0285420 AT1G62560.2 24.303 251 131 10 9 231 8 227 9.01e-12 67.4
Msa0285420 AT1G63370.1 23.904 251 137 8 8 231 7 230 1.20e-11 67.4
Msa0285420 AT1G63370.2 23.887 247 134 8 14 233 13 232 1.20e-11 66.6
Msa0285420 AT1G62560.1 24.303 251 131 10 9 231 8 227 1.34e-11 67.0
Msa0285420 AT5G11320.2 24.728 368 213 15 16 381 19 324 2.14e-11 65.9
Msa0285420 AT5G61290.1 27.572 243 128 9 14 231 16 235 6.15e-11 65.1

Find 133 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTCTCATGCTGAGATTT+TGG 0.081241 2_3:+25165160 Msa0285420:CDS
TCTTCCTCAAATGGGTGTTC+TGG 0.276233 2_3:-25169761 None:intergenic
AATGCTTTCACAAACAATTA+AGG 0.289580 2_3:+25170456 Msa0285420:CDS
ATTGGACACTTCCACATTAT+AGG 0.303294 2_3:+25168667 Msa0285420:CDS
CTAATTCAATTGGTGGTGTT+TGG 0.306081 2_3:+25165042 Msa0285420:CDS
TGATGAAATATGTGAAGATT+TGG 0.311891 2_3:+25170552 Msa0285420:CDS
TTGCGTCCGATTCATTAGTT+TGG 0.314121 2_3:-25165352 None:intergenic
CCAATTCTAGACACTATAAT+TGG 0.315773 2_3:-25164942 None:intergenic
GAAAGATTGAGATTTCTATT+TGG 0.316351 2_3:+25170648 Msa0285420:exon
ATTGTGCATGGTTGCCCTTC+TGG 0.318883 2_3:-25168627 None:intergenic
AAACTTCCGTTTGAGAAGTA+TGG 0.319264 2_3:+25169731 Msa0285420:CDS
TAATGAATCGGACGCAATTC+AGG 0.324489 2_3:+25165358 Msa0285420:CDS
TATTTACCATTGGAGATAAT+AGG 0.327759 2_3:-25168788 None:intergenic
GATGCAAAATCTTCCTCAAA+TGG 0.353751 2_3:-25169770 None:intergenic
GGGAAAGAAGGTTGTGGTTG+TGG 0.353865 2_3:+25166236 Msa0285420:CDS
TGAGCCTTTCTGTAGCTTGT+TGG 0.361255 2_3:+25169985 Msa0285420:CDS
ATACGTTCCATGTGGCTTGC+TGG 0.361433 2_3:+25170394 Msa0285420:CDS
AAGATTTGGGTTGGCATACT+TGG 0.370246 2_3:+25170566 Msa0285420:CDS
TTTGGAGACATTGTTCCTAT+AGG 0.379655 2_3:+25165060 Msa0285420:CDS
CCAATTATAGTGTCTAGAAT+TGG 0.380149 2_3:+25164942 Msa0285420:CDS
CCTCCACCAAACACCAAATC+AGG 0.382770 2_3:+25168740 Msa0285420:CDS
AACACCACCAATTGAATTAG+TGG 0.384296 2_3:-25165039 None:intergenic
AGCAACTAGTGACCTTGTTA+AGG 0.385691 2_3:+25166215 Msa0285420:CDS
GCGGTTTGCACTGGAAAATA+TGG 0.387290 2_3:+25166093 Msa0285420:CDS
TTTGAAGCCACTAATTCAAT+TGG 0.393284 2_3:+25165032 Msa0285420:CDS
TAACCCACAAAGGCCATGTT+TGG 0.399285 2_3:-25170337 None:intergenic
GATGTTGTTCTCCTTGCAAC+TGG 0.404208 2_3:+25169926 Msa0285420:CDS
GTAAACCCTGATTTGGTGTT+TGG 0.407304 2_3:-25168746 None:intergenic
AGGAACTGCATCACAACATT+TGG 0.413647 2_3:+25170517 Msa0285420:CDS
GGAAAGAAGGTTGTGGTTGT+GGG 0.417388 2_3:+25166237 Msa0285420:CDS
GATGAAATATGTGAAGATTT+GGG 0.417877 2_3:+25170553 Msa0285420:CDS
TGGTGGAAATGAAGTTTGTT+CGG 0.419334 2_3:+25165246 Msa0285420:CDS
AAGTGGATTTCCGTGGTCAT+TGG 0.424567 2_3:-25165300 None:intergenic
GGTGGAAATGAAGTTTGTTC+GGG 0.424789 2_3:+25165247 Msa0285420:CDS
GATTCCAAACATGGCCTTTG+TGG 0.425206 2_3:+25170333 Msa0285420:CDS
AATTGTGTTTACCTGTATAG+TGG 0.425289 2_3:-25170028 None:intergenic
CTCCTTGCAACTGGTTATGA+TGG 0.429093 2_3:+25169935 Msa0285420:CDS
GTGTCTAGAATTGGCATCAT+AGG 0.439915 2_3:+25164951 Msa0285420:CDS
TAGGGCTGTAGTGAAAGAAT+TGG 0.441584 2_3:-25164899 None:intergenic
CAAGGGACCTGAGGTGTTCA+AGG 0.445930 2_3:+25166149 Msa0285420:CDS
CATGGAAATGTTGGCATCAA+TGG 0.446961 2_3:-25166123 None:intergenic
AGTGGATTTCCGTGGTCATT+GGG 0.457189 2_3:-25165299 None:intergenic
TTCAATCCATACTTCTCAAA+CGG 0.458388 2_3:-25169737 None:intergenic
TTCTGTCCAAACTAATGAAT+CGG 0.467681 2_3:+25165346 Msa0285420:CDS
GCAACTAGTGACCTTGTTAA+GGG 0.468058 2_3:+25166216 Msa0285420:CDS
CTGGTACCATGCCACTATAC+AGG 0.469016 2_3:+25170017 Msa0285420:CDS
CACTTCCACATTATAGGATG+TGG 0.475745 2_3:+25168673 Msa0285420:CDS
AAGTTGCCTTGAGTGGCCAT+AGG 0.476345 2_3:-25164918 None:intergenic
GACCACGGAAATCCACTTCC+TGG 0.476622 2_3:+25165305 Msa0285420:CDS
ATTCCAAACATGGCCTTTGT+GGG 0.477703 2_3:+25170334 Msa0285420:CDS
ACCTGAGGTGTTCAAGGGTA+AGG 0.478572 2_3:+25166155 Msa0285420:CDS
AAACTTCATTTCCACCACTT+TGG 0.481987 2_3:-25165240 None:intergenic
TGACCTTGTTAAGGGAAAGA+AGG 0.483185 2_3:+25166224 Msa0285420:CDS
GAAACCAGAACACCCATTTG+AGG 0.486081 2_3:+25169757 Msa0285420:CDS
GTTTGCCTGTGCACATTCCA+TGG 0.486634 2_3:-25166286 None:intergenic
AACCATGCACAATGATCATA+AGG 0.486955 2_3:+25168637 Msa0285420:CDS
ATGCAAAATCTTCCTCAAAT+GGG 0.488179 2_3:-25169769 None:intergenic
CACTTCCTGGTCGTCCTGTG+TGG 0.488678 2_3:+25165318 Msa0285420:CDS
CCATCCATCGATTCCAAACA+TGG 0.490544 2_3:+25170324 Msa0285420:CDS
GAGTTTGTAGCGGTTTGCAC+TGG 0.495955 2_3:+25166084 Msa0285420:CDS
TTATAGTCACCAGCAGTGTA+AGG 0.496419 2_3:-25170622 None:intergenic
GAAGCCACTAATTCAATTGG+TGG 0.496741 2_3:+25165035 Msa0285420:CDS
AACCCTGATTTGGTGTTTGG+TGG 0.497741 2_3:-25168743 None:intergenic
GCATTTACTCCTTACACTGC+TGG 0.499416 2_3:+25170613 Msa0285420:CDS
AGAATTGGCATCATAGGTGC+TGG 0.500736 2_3:+25164957 Msa0285420:CDS
AGCTCCCACACAGGACGACC+AGG 0.506825 2_3:-25165323 None:intergenic
ATTCTTTCACTACAGCCCTA+TGG 0.509923 2_3:+25164902 Msa0285420:exon
AAGTTTGTTCGGGACAAAGA+AGG 0.514045 2_3:+25165257 Msa0285420:CDS
CTGAAGCTTAGTACACCTAT+AGG 0.515356 2_3:-25165075 None:intergenic
ACCTCAGGTCCCTTGTTGCA+TGG 0.517460 2_3:-25166141 None:intergenic
TCCAAAATCTCAGCATGAGA+AGG 0.520143 2_3:-25165161 None:intergenic
ATGCCTCCTATTATCTCCAA+TGG 0.520516 2_3:+25168782 Msa0285420:CDS
ACCTTACCCTTGAACACCTC+AGG 0.522344 2_3:-25166156 None:intergenic
TGATCATAAGGAGTTTGCAT+TGG 0.525875 2_3:+25168649 Msa0285420:CDS
CCTGATTTGGTGTTTGGTGG+AGG 0.527093 2_3:-25168740 None:intergenic
CAACCTTCTTTCCCTTAACA+AGG 0.529813 2_3:-25166227 None:intergenic
CCCTTGTTGCATGGAAATGT+TGG 0.530793 2_3:-25166132 None:intergenic
AGTTGCCTTGAGTGGCCATA+GGG 0.533034 2_3:-25164917 None:intergenic
TCCCATCATAACCAGTTGCA+AGG 0.534071 2_3:-25169937 None:intergenic
AAGCCACATGGAACGTATCT+CGG 0.538091 2_3:-25170389 None:intergenic
ATTTGGGTTGGCATACTTGG+AGG 0.538869 2_3:+25170569 Msa0285420:CDS
CCAAAATCTCAGCATGAGAA+GGG 0.542021 2_3:-25165160 None:intergenic
AATTGGTAAGTTGCCTTGAG+TGG 0.544028 2_3:-25164925 None:intergenic
ACTTCCTGGTCGTCCTGTGT+GGG 0.544048 2_3:+25165319 Msa0285420:CDS
CACACAGGACGACCAGGAAG+TGG 0.544605 2_3:-25165317 None:intergenic
TCCTTGCAACTGGTTATGAT+GGG 0.545738 2_3:+25169936 Msa0285420:CDS
AAGGCCATGTTTGGAATCGA+TGG 0.546006 2_3:-25170328 None:intergenic
TTACCATTGGAGATAATAGG+AGG 0.558881 2_3:-25168785 None:intergenic
CTAAGCTTCAGTCACAAACA+TGG 0.565932 2_3:+25165087 Msa0285420:CDS
AACAAGCTACAGAAAGGCTC+AGG 0.566868 2_3:-25169983 None:intergenic
TCATAGAGTCCTACTTGCTG+TGG 0.569108 2_3:+25169708 Msa0285420:CDS
TCCATGCAACAAGGGACCTG+AGG 0.570241 2_3:+25166140 Msa0285420:CDS
GTTTGGAATCGATGGATGGA+CGG 0.572935 2_3:-25170320 None:intergenic
AGCTTGTTGGAATACCCTAC+TGG 0.573175 2_3:+25169998 Msa0285420:CDS
TGTTAAGGGAAAGAAGGTTG+TGG 0.573393 2_3:+25166230 Msa0285420:CDS
TATAGTGGCATGGTACCAGT+AGG 0.579959 2_3:-25170013 None:intergenic
CCATGTTTGGAATCGATGGA+TGG 0.583448 2_3:-25170324 None:intergenic
ATCAGCTATTGATCTAGCCA+TGG 0.583633 2_3:+25166269 Msa0285420:CDS
AAATATGTGAAGATTTGGGT+TGG 0.584905 2_3:+25170557 Msa0285420:CDS
ACTTGTTATGAAGGACCAGA+AGG 0.585320 2_3:+25168612 Msa0285420:intron
TCAAAAGAGCATCAAAGTGG+TGG 0.590237 2_3:+25169855 Msa0285420:CDS
ACTTCCACATTATAGGATGT+GGG 0.591116 2_3:+25168674 Msa0285420:CDS
ATCATAGGTGCTGGAGTGAG+TGG 0.592554 2_3:+25164966 Msa0285420:CDS
TTCACAAACAATTAAGGACA+TGG 0.592895 2_3:+25170462 Msa0285420:CDS
TCTAGCCATGGAATGTGCAC+AGG 0.594425 2_3:+25166281 Msa0285420:CDS
GCCAACATTTCCATGCAACA+AGG 0.599576 2_3:+25166131 Msa0285420:CDS
TATTCCAACAAGCTACAGAA+AGG 0.603701 2_3:-25169989 None:intergenic
TGTTTACCTGTATAGTGGCA+TGG 0.612113 2_3:-25170023 None:intergenic
CGGAAGTTTCCACAGCAAGT+AGG 0.614813 2_3:-25169717 None:intergenic
AAGGGACCTGAGGTGTTCAA+GGG 0.619139 2_3:+25166150 Msa0285420:CDS
TACAGCCCTATGGCCACTCA+AGG 0.619181 2_3:+25164912 Msa0285420:exon
ATGATATTAAACAGAGACGT+GGG 0.621879 2_3:+25169675 Msa0285420:intron
CTCCTTATGATCATTGTGCA+TGG 0.626136 2_3:-25168639 None:intergenic
CTCCACCAAACACCAAATCA+GGG 0.629606 2_3:+25168741 Msa0285420:CDS
TAAGTTCAACACCAAAGTGG+TGG 0.633478 2_3:+25165229 Msa0285420:CDS
TGGACAGAAAGCTCCCACAC+AGG 0.633526 2_3:-25165332 None:intergenic
ACTCCCCACATCCTATAATG+TGG 0.633850 2_3:-25168678 None:intergenic
CTTGTTATGAAGGACCAGAA+GGG 0.637745 2_3:+25168613 Msa0285420:intron
AAACCGCTACAAACTCGAAG+TGG 0.642911 2_3:-25166077 None:intergenic
TAATAGACCAGCAAGCCACA+TGG 0.644884 2_3:-25170401 None:intergenic
CTTCCACATTATAGGATGTG+GGG 0.652290 2_3:+25168675 Msa0285420:CDS
GTACCACTTCGAGTTTGTAG+CGG 0.667747 2_3:+25166074 Msa0285420:CDS
TCTTCAAAAGAGCATCAAAG+TGG 0.668843 2_3:+25169852 Msa0285420:CDS
GAATGTGCACAGGCAAACCA+AGG 0.670081 2_3:+25166291 Msa0285420:CDS
TGTTAAGTTCAACACCAAAG+TGG 0.674646 2_3:+25165226 Msa0285420:CDS
ACTCTCAACATAACCCACAA+AGG 0.682237 2_3:-25170347 None:intergenic
GACCAGGAAGTGGATTTCCG+TGG 0.691453 2_3:-25165307 None:intergenic
GGACGTCTACCCAATGACCA+CGG 0.697303 2_3:+25165290 Msa0285420:CDS
ATAGTGGCATGGTACCAGTA+GGG 0.697965 2_3:-25170012 None:intergenic
CCAACATTTCCATGCAACAA+GGG 0.700966 2_3:+25166132 Msa0285420:CDS
AATGATATTAAACAGAGACG+TGG 0.716066 2_3:+25169674 Msa0285420:intron
CATCCGAGATACGTTCCATG+TGG 0.741395 2_3:+25170386 Msa0285420:CDS
TGTTTGGTGGAGGAACTGTG+CGG 0.784861 2_3:-25168730 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATATATATTAATTAA+AGG - chr2_3:25167291-25167310 None:intergenic 0.0%
!!! ATTTAATTTTTTTTTTTATA+CGG - chr2_3:25169329-25169348 None:intergenic 0.0%
!!! AAAAATATCAAATTTTAACT+CGG - chr2_3:25165599-25165618 None:intergenic 10.0%
!!! ATATATTAAGTTACTTTTAT+AGG + chr2_3:25165718-25165737 Msa0285420:intron 10.0%
!!! TATATTAAGTTACTTTTATA+GGG + chr2_3:25165719-25165738 Msa0285420:intron 10.0%
!! ATGACTATTATATAAATAAA+TGG + chr2_3:25166827-25166846 Msa0285420:intron 10.0%
!! CTAAAATTAGAATAATTATA+TGG - chr2_3:25167136-25167155 None:intergenic 10.0%
!!! ACTAATTTTAAAAAATAAGA+AGG + chr2_3:25167847-25167866 Msa0285420:intron 10.0%
!! GAATTTAAAAAATAATTCAA+TGG - chr2_3:25168828-25168847 None:intergenic 10.0%
!!! TAAACAATTTCTTTTTATAA+GGG + chr2_3:25169535-25169554 Msa0285420:intron 10.0%
!!! CTAGAAAATTAATTAATTTT+AGG - chr2_3:25169608-25169627 None:intergenic 10.0%
!!! TTGTTCTTTAAAAATAATAA+TGG + chr2_3:25170764-25170783 Msa0285420:three_prime_UTR 10.0%
!!! TAATTTTAAGTGTTTAATTG+TGG - chr2_3:25165526-25165545 None:intergenic 15.0%
!!! TTTAAAATGTCAAATGTTAT+TGG + chr2_3:25165624-25165643 Msa0285420:intron 15.0%
!!! AAAATGTACAATAATCTTTT+TGG - chr2_3:25166575-25166594 None:intergenic 15.0%
!!! TTTGAATGATTTTTTTTTTC+TGG - chr2_3:25167701-25167720 None:intergenic 15.0%
!!! AAAATATTTTTAGCTGAATA+TGG - chr2_3:25167948-25167967 None:intergenic 15.0%
!! AATAAGGAATCATAAAATAA+AGG - chr2_3:25168039-25168058 None:intergenic 15.0%
!! GAGAAAGATAATATAAAATA+AGG - chr2_3:25168055-25168074 None:intergenic 15.0%
!! ATCTTATCAATTAGAAATAA+TGG - chr2_3:25168352-25168371 None:intergenic 15.0%
!!! TTTTAAATTCATGTTTTTAG+TGG + chr2_3:25168838-25168857 Msa0285420:intron 15.0%
!!! TTTTTTTTTTTTTTCTCATG+AGG - chr2_3:25169050-25169069 None:intergenic 15.0%
!! TTAATTATTGTCTCTAAATA+TGG + chr2_3:25169214-25169233 Msa0285420:intron 15.0%
!! TCTATAATTGAAAGATTATT+TGG + chr2_3:25169355-25169374 Msa0285420:intron 15.0%
!!! CTAAACAATTTCTTTTTATA+AGG + chr2_3:25169534-25169553 Msa0285420:intron 15.0%
!!! AAACAATTTCTTTTTATAAG+GGG + chr2_3:25169536-25169555 Msa0285420:intron 15.0%
!!! TCTTTAAAAATAATAATGGA+TGG + chr2_3:25170768-25170787 Msa0285420:three_prime_UTR 15.0%
!!! GATAAAATCATCTTATTTGA+GGG - chr2_3:25165898-25165917 None:intergenic 20.0%
!!! AGATAAAATCATCTTATTTG+AGG - chr2_3:25165899-25165918 None:intergenic 20.0%
!! TGAATATCTCATATATATCA+AGG + chr2_3:25165925-25165944 Msa0285420:intron 20.0%
!! AATTAACAAAAAAATCCACA+TGG + chr2_3:25166535-25166554 Msa0285420:intron 20.0%
!! TAAAAAATCAAACGATTTCT+TGG - chr2_3:25166782-25166801 None:intergenic 20.0%
!! ATATAAATAAATGGATCGTT+TGG + chr2_3:25166836-25166855 Msa0285420:intron 20.0%
!! AATATATATGAGCTAAAACT+CGG + chr2_3:25167090-25167109 Msa0285420:intron 20.0%
!! TAGAAATATTAGTTATATCG+AGG - chr2_3:25167412-25167431 None:intergenic 20.0%
!!! TTTAAACCATTTTTCTTATG+TGG - chr2_3:25167525-25167544 None:intergenic 20.0%
!! AAATCATTCAAAAGAAAGAT+AGG + chr2_3:25167709-25167728 Msa0285420:intron 20.0%
!!! TTTTCATTGGTTAAAAACAA+TGG + chr2_3:25168150-25168169 Msa0285420:intron 20.0%
!!! CAAATAAAGAAAAGCATAAA+AGG - chr2_3:25168505-25168524 None:intergenic 20.0%
!! TTAAAAAACGCAAAAGTTTA+TGG - chr2_3:25168560-25168579 None:intergenic 20.0%
!! AGATCATATTTATTTACCAT+TGG - chr2_3:25168801-25168820 None:intergenic 20.0%
!! AATAACTAAAATTTAGAGAC+TGG + chr2_3:25168880-25168899 Msa0285420:intron 20.0%
!! TAACATAGTATAGAGAAAAT+TGG + chr2_3:25168953-25168972 Msa0285420:intron 20.0%
!!! AAATTAAAGTATTTGACCAA+TGG - chr2_3:25169165-25169184 None:intergenic 20.0%
!! CTTATCAAAAAAAATGTTGA+TGG + chr2_3:25169191-25169210 Msa0285420:intron 20.0%
!! TAATCTTTCAATTATAGAGA+TGG - chr2_3:25169353-25169372 None:intergenic 20.0%
!!! ATTGAAAGATTATTTGGTTT+TGG + chr2_3:25169361-25169380 Msa0285420:intron 20.0%
!! GCATCAAATTTCAAAATTTA+AGG + chr2_3:25169390-25169409 Msa0285420:intron 20.0%
!! GTTAATATATGTTTATTCCT+CGG - chr2_3:25169585-25169604 None:intergenic 20.0%
!!! ATTTTGATGTATTTTTTGTC+AGG + chr2_3:25170293-25170312 Msa0285420:intron 20.0%
!!! TTTTGATGTATTTTTTGTCA+GGG + chr2_3:25170294-25170313 Msa0285420:intron 20.0%
!!! ATGCACTTTTTTTATTCATA+CGG - chr2_3:25170722-25170741 None:intergenic 20.0%
!!! GAAATTTTTTATGAAAAGCT+AGG - chr2_3:25170794-25170813 None:intergenic 20.0%
!! ATGAATTTAGTGATTTTCCA+TGG + chr2_3:25165114-25165133 Msa0285420:CDS 25.0%
! AGGGACAAAAAAAAATTATG+AGG + chr2_3:25165738-25165757 Msa0285420:intron 25.0%
! AACAAAAATTCGAATTTGTC+TGG + chr2_3:25165845-25165864 Msa0285420:intron 25.0%
! AGATTAAGAACTAGAAAGAA+AGG + chr2_3:25167025-25167044 Msa0285420:intron 25.0%
! TAAACTCGGGTAAAATAATA+TGG + chr2_3:25167055-25167074 Msa0285420:intron 25.0%
!! TACTTGCTAACAAAGTTATA+GGG - chr2_3:25167239-25167258 None:intergenic 25.0%
!! ATACTTGCTAACAAAGTTAT+AGG - chr2_3:25167240-25167259 None:intergenic 25.0%
!! TTGTTAGCAAGTATTTTACA+TGG + chr2_3:25167246-25167265 Msa0285420:intron 25.0%
! ATATGTTATATATGCACTCA+GGG - chr2_3:25167377-25167396 None:intergenic 25.0%
! TTTCCACCATAAATTAAACT+CGG - chr2_3:25167553-25167572 None:intergenic 25.0%
!! ACGAAATTTTACTTACCTAA+CGG + chr2_3:25167582-25167601 Msa0285420:intron 25.0%
!!! TTTTGTTGGTGTTATTCTTA+TGG - chr2_3:25167637-25167656 None:intergenic 25.0%
!!! TTTTTTTTCTGGCTTAACTT+AGG - chr2_3:25167690-25167709 None:intergenic 25.0%
! CTGAATAAATGAAAAATTCG+AGG - chr2_3:25167808-25167827 None:intergenic 25.0%
!! CTCGAATTTTTCATTTATTC+AGG + chr2_3:25167806-25167825 Msa0285420:intron 25.0%
!!! ATTTTTAGCTGAATATGGTA+CGG - chr2_3:25167943-25167962 None:intergenic 25.0%
!!! TCTTTTCTCTCTTTTTTCAT+TGG + chr2_3:25168137-25168156 Msa0285420:intron 25.0%
! TATTTACCATTGGAGATAAT+AGG - chr2_3:25168791-25168810 None:intergenic 25.0%
!!! ACTTTTGAAATTGACCATTT+CGG + chr2_3:25169013-25169032 Msa0285420:intron 25.0%
!!! AATTTTGAAATTTGATGCCA+AGG - chr2_3:25169388-25169407 None:intergenic 25.0%
!!! ATAATATTCTAAAGCGAACA+CGG + chr2_3:25170084-25170103 Msa0285420:intron 25.0%
!!! TTTGATGTATTTTTTGTCAG+GGG + chr2_3:25170295-25170314 Msa0285420:intron 25.0%
! AATGCTTTCACAAACAATTA+AGG + chr2_3:25170456-25170475 Msa0285420:CDS 25.0%
! AAACAATGAAAAAGTCTACA+AGG + chr2_3:25170485-25170504 Msa0285420:CDS 25.0%
! TGATGAAATATGTGAAGATT+TGG + chr2_3:25170552-25170571 Msa0285420:CDS 25.0%
! GATGAAATATGTGAAGATTT+GGG + chr2_3:25170553-25170572 Msa0285420:CDS 25.0%
! GAAAGATTGAGATTTCTATT+TGG + chr2_3:25170648-25170667 Msa0285420:exon 25.0%
CCAATTCTAGACACTATAAT+TGG - chr2_3:25164945-25164964 None:intergenic 30.0%
! CCAATTATAGTGTCTAGAAT+TGG + chr2_3:25164942-25164961 Msa0285420:CDS 30.0%
TAGTGGCTTCAAAAACAATA+GGG - chr2_3:25165025-25165044 None:intergenic 30.0%
TTAGTGGCTTCAAAAACAAT+AGG - chr2_3:25165026-25165045 None:intergenic 30.0%
! TTTGAAGCCACTAATTCAAT+TGG + chr2_3:25165032-25165051 Msa0285420:CDS 30.0%
! TAATCAGTACTCTCTCTTTT+AGG - chr2_3:25165140-25165159 None:intergenic 30.0%
!!! GACAAAGAAGGTTTTGATTT+CGG + chr2_3:25165269-25165288 Msa0285420:CDS 30.0%
TTCTGTCCAAACTAATGAAT+CGG + chr2_3:25165346-25165365 Msa0285420:CDS 30.0%
CATTGACAACATCAAAATAG+TGG + chr2_3:25165568-25165587 Msa0285420:intron 30.0%
AGACATGCATGTGTAAAAAT+TGG + chr2_3:25165673-25165692 Msa0285420:intron 30.0%
! ATTTTTGTTCACTACGTTGT+GGG - chr2_3:25165834-25165853 None:intergenic 30.0%
! AATTTTTGTTCACTACGTTG+TGG - chr2_3:25165835-25165854 None:intergenic 30.0%
!! ACGTAACTTGTTCTAAATTG+CGG + chr2_3:25166366-25166385 Msa0285420:intron 30.0%
AATCATAATGCATACAAGTC+TGG + chr2_3:25166457-25166476 Msa0285420:intron 30.0%
! GTTCATTTCTTTTATCCATG+TGG - chr2_3:25166553-25166572 None:intergenic 30.0%
! AATCCTAGTTTAGAGTCATT+TGG - chr2_3:25166648-25166667 None:intergenic 30.0%
AAAATCAAACGATTTCTTGG+AGG - chr2_3:25166779-25166798 None:intergenic 30.0%
TAGTGTTAACGAAATTGAGA+TGG + chr2_3:25166993-25167012 Msa0285420:intron 30.0%
AGAAAGGATACACATAAACT+CGG + chr2_3:25167041-25167060 Msa0285420:intron 30.0%
AATCAACTACATCCACAATT+GGG - chr2_3:25167161-25167180 None:intergenic 30.0%
AAATCAACTACATCCACAAT+TGG - chr2_3:25167162-25167181 None:intergenic 30.0%
! ACTTGCTAACAAAGTTATAG+GGG - chr2_3:25167238-25167257 None:intergenic 30.0%
TATGTTATATATGCACTCAG+GGG - chr2_3:25167376-25167395 None:intergenic 30.0%
GATATGTTATATATGCACTC+AGG - chr2_3:25167378-25167397 None:intergenic 30.0%
! TTGTTACTTAACCAAGTGAT+TGG + chr2_3:25167479-25167498 Msa0285420:intron 30.0%
TGAACTCCACATAAGAAAAA+TGG + chr2_3:25167516-25167535 Msa0285420:intron 30.0%
! AACAACCCGAGTTTAATTTA+TGG + chr2_3:25167544-25167563 Msa0285420:intron 30.0%
TTCCACCATAAATTAAACTC+GGG - chr2_3:25167552-25167571 None:intergenic 30.0%
!! GGTGTTATTCTTATGGAAAA+AGG - chr2_3:25167630-25167649 None:intergenic 30.0%
! GTAAGTAGGTAAACTTTTGT+TGG - chr2_3:25167651-25167670 None:intergenic 30.0%
! AACAAGTTCTAGTAGTAAGT+AGG - chr2_3:25167665-25167684 None:intergenic 30.0%
CAAGTATAACTTACTTAGCA+AGG + chr2_3:25167744-25167763 Msa0285420:intron 30.0%
AATGAAAAATTCGAGGTTTG+CGG - chr2_3:25167801-25167820 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr2_3:25168163-25168182 Msa0285420:intron 30.0%
AAGAGAATAATGTGAGTATG+AGG + chr2_3:25168198-25168217 Msa0285420:intron 30.0%
AGAGAATAATGTGAGTATGA+GGG + chr2_3:25168199-25168218 Msa0285420:intron 30.0%
ATTTAGATATTGCGATTGTG+TGG + chr2_3:25168447-25168466 Msa0285420:intron 30.0%
!! TTGCTTCAAACTTGTTATGA+AGG + chr2_3:25168603-25168622 Msa0285420:intron 30.0%
GTTGCATAGAACATGAAAAA+TGG - chr2_3:25168705-25168724 None:intergenic 30.0%
!! CTTTTAAGTAAACCCTGATT+TGG - chr2_3:25168756-25168775 None:intergenic 30.0%
CAGAATCATGAGGTATAATA+TGG - chr2_3:25168906-25168925 None:intergenic 30.0%
ATTGGTTGTAGGAATATCTT+TGG + chr2_3:25169132-25169151 Msa0285420:intron 30.0%
! TAAAGTATTTGACCAATGGT+AGG - chr2_3:25169161-25169180 None:intergenic 30.0%
AAAAACCGCTAATATTAGAG+GGG - chr2_3:25169298-25169317 None:intergenic 30.0%
CAAAAACCGCTAATATTAGA+GGG - chr2_3:25169299-25169318 None:intergenic 30.0%
TCAAAAACCGCTAATATTAG+AGG - chr2_3:25169300-25169319 None:intergenic 30.0%
CCTGTAATTTGAGCAAATTT+CGG + chr2_3:25169424-25169443 Msa0285420:intron 30.0%
!! ACTCGAAGATTCTTTGATTT+TGG - chr2_3:25169500-25169519 None:intergenic 30.0%
AATGATATTAAACAGAGACG+TGG + chr2_3:25169674-25169693 Msa0285420:intron 30.0%
ATGATATTAAACAGAGACGT+GGG + chr2_3:25169675-25169694 Msa0285420:intron 30.0%
TTCAATCCATACTTCTCAAA+CGG - chr2_3:25169740-25169759 None:intergenic 30.0%
ATGCAAAATCTTCCTCAAAT+GGG - chr2_3:25169772-25169791 None:intergenic 30.0%
!!! TTTTTTCAATGAGGCTGATA+AGG + chr2_3:25169820-25169839 Msa0285420:CDS 30.0%
!! TTTTTCAATGAGGCTGATAA+GGG + chr2_3:25169821-25169840 Msa0285420:CDS 30.0%
AATTGTGTTTACCTGTATAG+TGG - chr2_3:25170031-25170050 None:intergenic 30.0%
!! GTGTTCGCTTTAGAATATTA+TGG - chr2_3:25170085-25170104 None:intergenic 30.0%
ATTCTCAACTATGCTTAGAA+AGG - chr2_3:25170263-25170282 None:intergenic 30.0%
TTCACAAACAATTAAGGACA+TGG + chr2_3:25170462-25170481 Msa0285420:CDS 30.0%
! AGTCTACAAGGTTTTACAAA+AGG + chr2_3:25170497-25170516 Msa0285420:CDS 30.0%
AAATATGTGAAGATTTGGGT+TGG + chr2_3:25170557-25170576 Msa0285420:CDS 30.0%
!! GTGTGATAGTTGTTTTGCTA+CGG - chr2_3:25164997-25165016 None:intergenic 35.0%
AACACCACCAATTGAATTAG+TGG - chr2_3:25165042-25165061 None:intergenic 35.0%
!! CTAATTCAATTGGTGGTGTT+TGG + chr2_3:25165042-25165061 Msa0285420:CDS 35.0%
TTTGGAGACATTGTTCCTAT+AGG + chr2_3:25165060-25165079 Msa0285420:CDS 35.0%
TGTTAAGTTCAACACCAAAG+TGG + chr2_3:25165226-25165245 Msa0285420:CDS 35.0%
AAACTTCATTTCCACCACTT+TGG - chr2_3:25165243-25165262 None:intergenic 35.0%
! TGGTGGAAATGAAGTTTGTT+CGG + chr2_3:25165246-25165265 Msa0285420:CDS 35.0%
GTCCATTTCTTATCCTTCTA+CGG - chr2_3:25165766-25165785 None:intergenic 35.0%
AATTCGAATTTGTCTGGTAG+TGG + chr2_3:25165851-25165870 Msa0285420:intron 35.0%
TTGTCTACTTGATGTTTCAG+CGG + chr2_3:25166052-25166071 Msa0285420:intron 35.0%
CTAAGAGCAAATTGTTACCT+TGG - chr2_3:25166311-25166330 None:intergenic 35.0%
ACGAGACATCCAAATTCAAA+GGG - chr2_3:25166483-25166502 None:intergenic 35.0%
TACGAGACATCCAAATTCAA+AGG - chr2_3:25166484-25166503 None:intergenic 35.0%
GAACCAAATGACTCTAAACT+AGG + chr2_3:25166642-25166661 Msa0285420:intron 35.0%
ATATTACACAATAGCACGCA+TGG + chr2_3:25166722-25166741 Msa0285420:intron 35.0%
ATATACGACACTGACACTTA+TGG + chr2_3:25166935-25166954 Msa0285420:intron 35.0%
TTAACGAAATTGAGATGGAG+AGG + chr2_3:25166998-25167017 Msa0285420:intron 35.0%
GAAAGGATACACATAAACTC+GGG + chr2_3:25167042-25167061 Msa0285420:intron 35.0%
!!! CTAATTTTAGAGCCCAATTG+TGG + chr2_3:25167146-25167165 Msa0285420:intron 35.0%
TTTGAGTGCCCCTAAAAATA+TGG + chr2_3:25167310-25167329 Msa0285420:intron 35.0%
! AACCCGAGTTTAATTTATGG+TGG + chr2_3:25167547-25167566 Msa0285420:intron 35.0%
CAAGGTCACTACGATATTAT+GGG + chr2_3:25167762-25167781 Msa0285420:intron 35.0%
CCTTGATCAACTAGCAAAAT+GGG - chr2_3:25167982-25168001 None:intergenic 35.0%
! CCATTTTGCTAGTTGATCAA+GGG + chr2_3:25167980-25167999 Msa0285420:intron 35.0%
!! GAATGGCTTTACTGTTTTGA+TGG + chr2_3:25168008-25168027 Msa0285420:intron 35.0%
GTCACAAAAGTTGTCTCAAA+TGG - chr2_3:25168113-25168132 None:intergenic 35.0%
GTCAAAAAGTTGTCACAAAG+TGG + chr2_3:25168230-25168249 Msa0285420:intron 35.0%
AATACCTAATACCACCTGAA+AGG - chr2_3:25168309-25168328 None:intergenic 35.0%
! TCAGGTGGTATTAGGTATTT+TGG + chr2_3:25168310-25168329 Msa0285420:intron 35.0%
AACCATGCACAATGATCATA+AGG + chr2_3:25168637-25168656 Msa0285420:CDS 35.0%
TGATCATAAGGAGTTTGCAT+TGG + chr2_3:25168649-25168668 Msa0285420:CDS 35.0%
ATTGGACACTTCCACATTAT+AGG + chr2_3:25168667-25168686 Msa0285420:CDS 35.0%
ACTTCCACATTATAGGATGT+GGG + chr2_3:25168674-25168693 Msa0285420:CDS 35.0%
TTACCATTGGAGATAATAGG+AGG - chr2_3:25168788-25168807 None:intergenic 35.0%
TTGTGAATGACAGAATCATG+AGG - chr2_3:25168916-25168935 None:intergenic 35.0%
GTTTACCCCTCTAATATTAG+CGG + chr2_3:25169290-25169309 Msa0285420:intron 35.0%
!!! GATTATTTGGTTTTGGACCT+TGG + chr2_3:25169368-25169387 Msa0285420:intron 35.0%
! CCGAAATTTGCTCAAATTAC+AGG - chr2_3:25169427-25169446 None:intergenic 35.0%
ACTGTGCAAAATCGATGATA+TGG - chr2_3:25169461-25169480 None:intergenic 35.0%
TGCACAGTCAAAATTCATGA+AGG + chr2_3:25169473-25169492 Msa0285420:intron 35.0%
TGTTTATTCCTCGGTATAGT+TGG - chr2_3:25169576-25169595 None:intergenic 35.0%
AAACTTCCGTTTGAGAAGTA+TGG + chr2_3:25169731-25169750 Msa0285420:CDS 35.0%
GATGCAAAATCTTCCTCAAA+TGG - chr2_3:25169773-25169792 None:intergenic 35.0%
!!! ACCAGAGAGTTTTTTCAATG+AGG + chr2_3:25169811-25169830 Msa0285420:CDS 35.0%
!! TCTTCAAAAGAGCATCAAAG+TGG + chr2_3:25169852-25169871 Msa0285420:CDS 35.0%
TATTCCAACAAGCTACAGAA+AGG - chr2_3:25169992-25170011 None:intergenic 35.0%
TGCTTGTAGATAATGACAAC+AGG - chr2_3:25170114-25170133 None:intergenic 35.0%
TACAAGCAATCATGTCATCA+GGG + chr2_3:25170126-25170145 Msa0285420:intron 35.0%
ATCTGACTATCTGATCTCAA+TGG + chr2_3:25170168-25170187 Msa0285420:intron 35.0%
!!! GAAAGCATTTTCTCAGCATT+TGG - chr2_3:25170445-25170464 None:intergenic 35.0%
TAGGGCTGTAGTGAAAGAAT+TGG - chr2_3:25164902-25164921 None:intergenic 40.0%
ATTCTTTCACTACAGCCCTA+TGG + chr2_3:25164902-25164921 Msa0285420:exon 40.0%
AATTGGTAAGTTGCCTTGAG+TGG - chr2_3:25164928-25164947 None:intergenic 40.0%
! GTGTCTAGAATTGGCATCAT+AGG + chr2_3:25164951-25164970 Msa0285420:CDS 40.0%
GAAGCCACTAATTCAATTGG+TGG + chr2_3:25165035-25165054 Msa0285420:CDS 40.0%
CTGAAGCTTAGTACACCTAT+AGG - chr2_3:25165078-25165097 None:intergenic 40.0%
CTAAGCTTCAGTCACAAACA+TGG + chr2_3:25165087-25165106 Msa0285420:CDS 40.0%
CCAAAATCTCAGCATGAGAA+GGG - chr2_3:25165163-25165182 None:intergenic 40.0%
TCCAAAATCTCAGCATGAGA+AGG - chr2_3:25165164-25165183 None:intergenic 40.0%
TAAGTTCAACACCAAAGTGG+TGG + chr2_3:25165229-25165248 Msa0285420:CDS 40.0%
! GGTGGAAATGAAGTTTGTTC+GGG + chr2_3:25165247-25165266 Msa0285420:CDS 40.0%
! AAGTTTGTTCGGGACAAAGA+AGG + chr2_3:25165257-25165276 Msa0285420:CDS 40.0%
TTGCGTCCGATTCATTAGTT+TGG - chr2_3:25165355-25165374 None:intergenic 40.0%
TAATGAATCGGACGCAATTC+AGG + chr2_3:25165358-25165377 Msa0285420:CDS 40.0%
GTTTAATTGTGGTCACGTCA+AGG - chr2_3:25165515-25165534 None:intergenic 40.0%
!! AAATTATGAGGTGCCGTAGA+AGG + chr2_3:25165750-25165769 Msa0285420:intron 40.0%
TGCCGTAGAAGGATAAGAAA+TGG + chr2_3:25165761-25165780 Msa0285420:intron 40.0%
GAAAATCGAGTCTGACAGAA+TGG + chr2_3:25165800-25165819 Msa0285420:intron 40.0%
CATGGAAATGTTGGCATCAA+TGG - chr2_3:25166126-25166145 None:intergenic 40.0%
CCAACATTTCCATGCAACAA+GGG + chr2_3:25166132-25166151 Msa0285420:CDS 40.0%
AGCAACTAGTGACCTTGTTA+AGG + chr2_3:25166215-25166234 Msa0285420:CDS 40.0%
GCAACTAGTGACCTTGTTAA+GGG + chr2_3:25166216-25166235 Msa0285420:CDS 40.0%
TGACCTTGTTAAGGGAAAGA+AGG + chr2_3:25166224-25166243 Msa0285420:CDS 40.0%
CAACCTTCTTTCCCTTAACA+AGG - chr2_3:25166230-25166249 None:intergenic 40.0%
TGTTAAGGGAAAGAAGGTTG+TGG + chr2_3:25166230-25166249 Msa0285420:CDS 40.0%
ATCAGCTATTGATCTAGCCA+TGG + chr2_3:25166269-25166288 Msa0285420:CDS 40.0%
GTGCAAAAAGAATACGAGTG+TGG + chr2_3:25166606-25166625 Msa0285420:intron 40.0%
ATCAAACGATTTCTTGGAGG+AGG - chr2_3:25166776-25166795 None:intergenic 40.0%
! GACACTGACACTTATGGTTT+TGG + chr2_3:25166941-25166960 Msa0285420:intron 40.0%
!!! CCAGTGCACCATATTTTTAG+GGG - chr2_3:25167321-25167340 None:intergenic 40.0%
!! CCCAGTGCACCATATTTTTA+GGG - chr2_3:25167322-25167341 None:intergenic 40.0%
CCCTAAAAATATGGTGCACT+GGG + chr2_3:25167319-25167338 Msa0285420:intron 40.0%
ATCACGTAAGTCCAATCACT+TGG - chr2_3:25167493-25167512 None:intergenic 40.0%
TAAGCTGAAGTTTGACCGTT+AGG - chr2_3:25167600-25167619 None:intergenic 40.0%
GCAAGGTCACTACGATATTA+TGG + chr2_3:25167761-25167780 Msa0285420:intron 40.0%
GTCACTACGATATTATGGGA+CGG + chr2_3:25167766-25167785 Msa0285420:intron 40.0%
TGATCAACTAGCAAAATGGG+TGG - chr2_3:25167979-25167998 None:intergenic 40.0%
! CCCATTTTGCTAGTTGATCA+AGG + chr2_3:25167979-25167998 Msa0285420:intron 40.0%
CCCTTGATCAACTAGCAAAA+TGG - chr2_3:25167983-25168002 None:intergenic 40.0%
ATGGAGAGAGAAAAAGGAAG+AGG + chr2_3:25168169-25168188 Msa0285420:intron 40.0%
TGGAGAGAGAAAAAGGAAGA+GGG + chr2_3:25168170-25168189 Msa0285420:intron 40.0%
!! ACTTGTTATGAAGGACCAGA+AGG + chr2_3:25168612-25168631 Msa0285420:intron 40.0%
! CTTGTTATGAAGGACCAGAA+GGG + chr2_3:25168613-25168632 Msa0285420:intron 40.0%
CTCCTTATGATCATTGTGCA+TGG - chr2_3:25168642-25168661 None:intergenic 40.0%
CACTTCCACATTATAGGATG+TGG + chr2_3:25168673-25168692 Msa0285420:CDS 40.0%
CTTCCACATTATAGGATGTG+GGG + chr2_3:25168675-25168694 Msa0285420:CDS 40.0%
!! GTAAACCCTGATTTGGTGTT+TGG - chr2_3:25168749-25168768 None:intergenic 40.0%
ATGCCTCCTATTATCTCCAA+TGG + chr2_3:25168782-25168801 Msa0285420:CDS 40.0%
TTGGGTATATGTCCTCATGT+CGG - chr2_3:25169098-25169117 None:intergenic 40.0%
ATATACCCAACCGACACAAA+TGG + chr2_3:25169108-25169127 Msa0285420:intron 40.0%
TATACCCAACCGACACAAAT+GGG + chr2_3:25169109-25169128 Msa0285420:intron 40.0%
ACAACCAATCCCATTTGTGT+CGG - chr2_3:25169121-25169140 None:intergenic 40.0%
!! ACACAAATGGGATTGGTTGT+AGG + chr2_3:25169121-25169140 Msa0285420:intron 40.0%
TATCTTTGGATGCCTACCAT+TGG + chr2_3:25169146-25169165 Msa0285420:intron 40.0%
CAAAATCGATGATATGGCAG+GGG - chr2_3:25169455-25169474 None:intergenic 40.0%
GCAAAATCGATGATATGGCA+GGG - chr2_3:25169456-25169475 None:intergenic 40.0%
TGCAAAATCGATGATATGGC+AGG - chr2_3:25169457-25169476 None:intergenic 40.0%
TTATTCCTCGGTATAGTTGG+TGG - chr2_3:25169573-25169592 None:intergenic 40.0%
GCCTCATTGAAAAAACTCTC+TGG - chr2_3:25169815-25169834 None:intergenic 40.0%
TCCTTGCAACTGGTTATGAT+GGG + chr2_3:25169936-25169955 Msa0285420:CDS 40.0%
TGTTTACCTGTATAGTGGCA+TGG - chr2_3:25170026-25170045 None:intergenic 40.0%
CTACAAGCAATCATGTCATC+AGG + chr2_3:25170125-25170144 Msa0285420:intron 40.0%
ATTCCAAACATGGCCTTTGT+GGG + chr2_3:25170334-25170353 Msa0285420:CDS 40.0%
ACTCTCAACATAACCCACAA+AGG - chr2_3:25170350-25170369 None:intergenic 40.0%
AGGAACTGCATCACAACATT+TGG + chr2_3:25170517-25170536 Msa0285420:CDS 40.0%
!! AAGATTTGGGTTGGCATACT+TGG + chr2_3:25170566-25170585 Msa0285420:CDS 40.0%
TTATAGTCACCAGCAGTGTA+AGG - chr2_3:25170625-25170644 None:intergenic 40.0%
AGAATTGGCATCATAGGTGC+TGG + chr2_3:25164957-25164976 Msa0285420:CDS 45.0%
! GTACTCTCTCTTTTAGGCCA+TGG - chr2_3:25165134-25165153 None:intergenic 45.0%
! CCCTTCTCATGCTGAGATTT+TGG + chr2_3:25165160-25165179 Msa0285420:CDS 45.0%
! AGTGGATTTCCGTGGTCATT+GGG - chr2_3:25165302-25165321 None:intergenic 45.0%
! AAGTGGATTTCCGTGGTCAT+TGG - chr2_3:25165303-25165322 None:intergenic 45.0%
! CTGTCAGACTCGATTTTCGT+TGG - chr2_3:25165798-25165817 None:intergenic 45.0%
! GTACCACTTCGAGTTTGTAG+CGG + chr2_3:25166074-25166093 Msa0285420:CDS 45.0%
AAACCGCTACAAACTCGAAG+TGG - chr2_3:25166080-25166099 None:intergenic 45.0%
GCGGTTTGCACTGGAAAATA+TGG + chr2_3:25166093-25166112 Msa0285420:CDS 45.0%
GCCAACATTTCCATGCAACA+AGG + chr2_3:25166131-25166150 Msa0285420:CDS 45.0%
CCCTTGTTGCATGGAAATGT+TGG - chr2_3:25166135-25166154 None:intergenic 45.0%
GGAAAGAAGGTTGTGGTTGT+GGG + chr2_3:25166237-25166256 Msa0285420:CDS 45.0%
CAAGTCTGGCCCTTTGAATT+TGG + chr2_3:25166471-25166490 Msa0285420:intron 45.0%
AAACGATTTCTTGGAGGAGG+AGG - chr2_3:25166773-25166792 None:intergenic 45.0%
CCCCTAAAAATATGGTGCAC+TGG + chr2_3:25167318-25167337 Msa0285420:intron 45.0%
! GCCCAGTGCACCATATTTTT+AGG - chr2_3:25167323-25167342 None:intergenic 45.0%
TAGCTGAATATGGTACGGCT+CGG - chr2_3:25167938-25167957 None:intergenic 45.0%
GTTGATCAAGGGAGCAAGAA+TGG + chr2_3:25167991-25168010 Msa0285420:intron 45.0%
ACTATAGCTGCATGCCTTTC+AGG + chr2_3:25168292-25168311 Msa0285420:intron 45.0%
! CATGCCTTTCAGGTGGTATT+AGG + chr2_3:25168302-25168321 Msa0285420:intron 45.0%
ACTCCCCACATCCTATAATG+TGG - chr2_3:25168681-25168700 None:intergenic 45.0%
CTCCACCAAACACCAAATCA+GGG + chr2_3:25168741-25168760 Msa0285420:CDS 45.0%
!! AACCCTGATTTGGTGTTTGG+TGG - chr2_3:25168746-25168765 None:intergenic 45.0%
GTATATGTCCTCATGTCGGT+AGG - chr2_3:25169094-25169113 None:intergenic 45.0%
!! CAATCCCATTTGTGTCGGTT+GGG - chr2_3:25169116-25169135 None:intergenic 45.0%
!! TCGGTATAGTTGGTGGTTTC+TGG - chr2_3:25169566-25169585 None:intergenic 45.0%
AGAAACCACCAACTATACCG+AGG + chr2_3:25169565-25169584 Msa0285420:intron 45.0%
! TCATAGAGTCCTACTTGCTG+TGG + chr2_3:25169708-25169727 Msa0285420:CDS 45.0%
GAAACCAGAACACCCATTTG+AGG + chr2_3:25169757-25169776 Msa0285420:CDS 45.0%
TCTTCCTCAAATGGGTGTTC+TGG - chr2_3:25169764-25169783 None:intergenic 45.0%
GATGTTGTTCTCCTTGCAAC+TGG + chr2_3:25169926-25169945 Msa0285420:CDS 45.0%
CTCCTTGCAACTGGTTATGA+TGG + chr2_3:25169935-25169954 Msa0285420:CDS 45.0%
TCCCATCATAACCAGTTGCA+AGG - chr2_3:25169940-25169959 None:intergenic 45.0%
AACAAGCTACAGAAAGGCTC+AGG - chr2_3:25169986-25170005 None:intergenic 45.0%
! TGAGCCTTTCTGTAGCTTGT+TGG + chr2_3:25169985-25170004 Msa0285420:CDS 45.0%
!! AGCTTGTTGGAATACCCTAC+TGG + chr2_3:25169998-25170017 Msa0285420:CDS 45.0%
ATAGTGGCATGGTACCAGTA+GGG - chr2_3:25170015-25170034 None:intergenic 45.0%
TATAGTGGCATGGTACCAGT+AGG - chr2_3:25170016-25170035 None:intergenic 45.0%
GATCTCCTTCGCTACATGAT+TGG + chr2_3:25170199-25170218 Msa0285420:intron 45.0%
TGCAACCAATCATGTAGCGA+AGG - chr2_3:25170207-25170226 None:intergenic 45.0%
ACTATGCTTAGAAAGGAGCG+CGG - chr2_3:25170256-25170275 None:intergenic 45.0%
! GTTTGGAATCGATGGATGGA+CGG - chr2_3:25170323-25170342 None:intergenic 45.0%
! CCATGTTTGGAATCGATGGA+TGG - chr2_3:25170327-25170346 None:intergenic 45.0%
!! CCATCCATCGATTCCAAACA+TGG + chr2_3:25170324-25170343 Msa0285420:CDS 45.0%
! AAGGCCATGTTTGGAATCGA+TGG - chr2_3:25170331-25170350 None:intergenic 45.0%
GATTCCAAACATGGCCTTTG+TGG + chr2_3:25170333-25170352 Msa0285420:CDS 45.0%
TAACCCACAAAGGCCATGTT+TGG - chr2_3:25170340-25170359 None:intergenic 45.0%
AAGCCACATGGAACGTATCT+CGG - chr2_3:25170392-25170411 None:intergenic 45.0%
TAATAGACCAGCAAGCCACA+TGG - chr2_3:25170404-25170423 None:intergenic 45.0%
!! ATTTGGGTTGGCATACTTGG+AGG + chr2_3:25170569-25170588 Msa0285420:CDS 45.0%
GCATTTACTCCTTACACTGC+TGG + chr2_3:25170613-25170632 Msa0285420:CDS 45.0%
!! TTTATATATAAGTAAAATTA+AGG + chr2_3:25169257-25169276 Msa0285420:intron 5.0%
!! TTATATATAAGTAAAATTAA+GGG + chr2_3:25169258-25169277 Msa0285420:intron 5.0%
!!! TAGAAAATTAATTAATTTTA+GGG - chr2_3:25169607-25169626 None:intergenic 5.0%
AGTTGCCTTGAGTGGCCATA+GGG - chr2_3:25164920-25164939 None:intergenic 50.0%
AAGTTGCCTTGAGTGGCCAT+AGG - chr2_3:25164921-25164940 None:intergenic 50.0%
!! ATCATAGGTGCTGGAGTGAG+TGG + chr2_3:25164966-25164985 Msa0285420:CDS 50.0%
GAGTTTGTAGCGGTTTGCAC+TGG + chr2_3:25166084-25166103 Msa0285420:CDS 50.0%
! AAGGGACCTGAGGTGTTCAA+GGG + chr2_3:25166150-25166169 Msa0285420:CDS 50.0%
! ACCTGAGGTGTTCAAGGGTA+AGG + chr2_3:25166155-25166174 Msa0285420:CDS 50.0%
ACCTTACCCTTGAACACCTC+AGG - chr2_3:25166159-25166178 None:intergenic 50.0%
GGGAAAGAAGGTTGTGGTTG+TGG + chr2_3:25166236-25166255 Msa0285420:CDS 50.0%
TCTAGCCATGGAATGTGCAC+AGG + chr2_3:25166281-25166300 Msa0285420:CDS 50.0%
GTTTGCCTGTGCACATTCCA+TGG - chr2_3:25166289-25166308 None:intergenic 50.0%
GAATGTGCACAGGCAAACCA+AGG + chr2_3:25166291-25166310 Msa0285420:CDS 50.0%
ATAGCTGCATGCCTTTCAGG+TGG + chr2_3:25168295-25168314 Msa0285420:intron 50.0%
ATTGTGCATGGTTGCCCTTC+TGG - chr2_3:25168630-25168649 None:intergenic 50.0%
! TGTTTGGTGGAGGAACTGTG+CGG - chr2_3:25168733-25168752 None:intergenic 50.0%
!! CCTGATTTGGTGTTTGGTGG+AGG - chr2_3:25168743-25168762 None:intergenic 50.0%
CCTCCACCAAACACCAAATC+AGG + chr2_3:25168740-25168759 Msa0285420:CDS 50.0%
AGGCTGAATCGTCTCCGAAA+TGG - chr2_3:25169030-25169049 None:intergenic 50.0%
GATATCCTCCTACCGACATG+AGG + chr2_3:25169083-25169102 Msa0285420:intron 50.0%
TATGTCCTCATGTCGGTAGG+AGG - chr2_3:25169091-25169110 None:intergenic 50.0%
! CCAATCCCATTTGTGTCGGT+TGG - chr2_3:25169117-25169136 None:intergenic 50.0%
CCAACCGACACAAATGGGAT+TGG + chr2_3:25169114-25169133 Msa0285420:intron 50.0%
CGGAAGTTTCCACAGCAAGT+AGG - chr2_3:25169720-25169739 None:intergenic 50.0%
CTGGTACCATGCCACTATAC+AGG + chr2_3:25170017-25170036 Msa0285420:CDS 50.0%
CATCCGAGATACGTTCCATG+TGG + chr2_3:25170386-25170405 Msa0285420:CDS 50.0%
! ATACGTTCCATGTGGCTTGC+TGG + chr2_3:25170394-25170413 Msa0285420:CDS 50.0%
TACAGCCCTATGGCCACTCA+AGG + chr2_3:25164912-25164931 Msa0285420:exon 55.0%
GGACGTCTACCCAATGACCA+CGG + chr2_3:25165290-25165309 Msa0285420:CDS 55.0%
GACCACGGAAATCCACTTCC+TGG + chr2_3:25165305-25165324 Msa0285420:CDS 55.0%
! GACCAGGAAGTGGATTTCCG+TGG - chr2_3:25165310-25165329 None:intergenic 55.0%
ACTTCCTGGTCGTCCTGTGT+GGG + chr2_3:25165319-25165338 Msa0285420:CDS 55.0%
TGGACAGAAAGCTCCCACAC+AGG - chr2_3:25165335-25165354 None:intergenic 55.0%
TCCATGCAACAAGGGACCTG+AGG + chr2_3:25166140-25166159 Msa0285420:CDS 55.0%
ACCTCAGGTCCCTTGTTGCA+TGG - chr2_3:25166144-25166163 None:intergenic 55.0%
! CAAGGGACCTGAGGTGTTCA+AGG + chr2_3:25166149-25166168 Msa0285420:CDS 55.0%
ACCCTGAACATAGGCCGAAG+GGG - chr2_3:25167351-25167370 None:intergenic 55.0%
GACCCTGAACATAGGCCGAA+GGG - chr2_3:25167352-25167371 None:intergenic 55.0%
TGACCCTGAACATAGGCCGA+AGG - chr2_3:25167353-25167372 None:intergenic 55.0%
TCAGGGGTGACCCTGAACAT+AGG - chr2_3:25167360-25167379 None:intergenic 55.0%
CACACAGGACGACCAGGAAG+TGG - chr2_3:25165320-25165339 None:intergenic 60.0%
CACTTCCTGGTCGTCCTGTG+TGG + chr2_3:25165318-25165337 Msa0285420:CDS 60.0%
CTGAACATAGGCCGAAGGGG+CGG - chr2_3:25167348-25167367 None:intergenic 60.0%
GCCCCTTCGGCCTATGTTCA+GGG + chr2_3:25167347-25167366 Msa0285420:intron 60.0%
AGCTCCCACACAGGACGACC+AGG - chr2_3:25165326-25165345 None:intergenic 65.0%
CGCCCCTTCGGCCTATGTTC+AGG + chr2_3:25167346-25167365 Msa0285420:intron 65.0%
GCACTGGGCTGCCGCCCCTT+CGG + chr2_3:25167334-25167353 Msa0285420:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 25164876 25170830 25164876 ID=Msa0285420;Name=Msa0285420
chr2_3 mRNA 25164876 25170830 25164876 ID=Msa0285420-mRNA-1;Parent=Msa0285420;Name=Msa0285420-mRNA-1;_AED=0.18;_eAED=0.18;_QI=45|1|1|1|1|1|5|173|523
chr2_3 exon 25164876 25165379 25164876 ID=Msa0285420-mRNA-1:exon:9366;Parent=Msa0285420-mRNA-1
chr2_3 exon 25166072 25166312 25166072 ID=Msa0285420-mRNA-1:exon:9367;Parent=Msa0285420-mRNA-1
chr2_3 exon 25168625 25168803 25168625 ID=Msa0285420-mRNA-1:exon:9368;Parent=Msa0285420-mRNA-1
chr2_3 exon 25169689 25170038 25169689 ID=Msa0285420-mRNA-1:exon:9369;Parent=Msa0285420-mRNA-1
chr2_3 exon 25170315 25170830 25170315 ID=Msa0285420-mRNA-1:exon:9370;Parent=Msa0285420-mRNA-1
chr2_3 five_prime_UTR 25164876 25164920 25164876 ID=Msa0285420-mRNA-1:five_prime_utr;Parent=Msa0285420-mRNA-1
chr2_3 CDS 25164921 25165379 25164921 ID=Msa0285420-mRNA-1:cds;Parent=Msa0285420-mRNA-1
chr2_3 CDS 25166072 25166312 25166072 ID=Msa0285420-mRNA-1:cds;Parent=Msa0285420-mRNA-1
chr2_3 CDS 25168625 25168803 25168625 ID=Msa0285420-mRNA-1:cds;Parent=Msa0285420-mRNA-1
chr2_3 CDS 25169689 25170038 25169689 ID=Msa0285420-mRNA-1:cds;Parent=Msa0285420-mRNA-1
chr2_3 CDS 25170315 25170657 25170315 ID=Msa0285420-mRNA-1:cds;Parent=Msa0285420-mRNA-1
chr2_3 three_prime_UTR 25170658 25170830 25170658 ID=Msa0285420-mRNA-1:three_prime_utr;Parent=Msa0285420-mRNA-1
Gene Sequence

>Msa0285420

ATGGCCACTCAAGGCAACTTACCAATTATAGTGTCTAGAATTGGCATCATAGGTGCTGGAGTGAGTGGTTTAGCCGTAGCAAAACAACTATCACACTACAACCCTATTGTTTTTGAAGCCACTAATTCAATTGGTGGTGTTTGGAGACATTGTTCCTATAGGTGTACTAAGCTTCAGTCACAAACATGGAATTATGAATTTAGTGATTTTCCATGGCCTAAAAGAGAGAGTACTGATTACCCTTCTCATGCTGAGATTTTGGAATACTTGCATATTTATGCTGTTCAATTTGATTTGTTCAAGTATGTTAAGTTCAACACCAAAGTGGTGGAAATGAAGTTTGTTCGGGACAAAGAAGGTTTTGATTTCGGACGTCTACCCAATGACCACGGAAATCCACTTCCTGGTCGTCCTGTGTGGGAGCTTTCTGTCCAAACTAATGAATCGGACGCAATTCAGCGGTACCACTTCGAGTTTGTAGCGGTTTGCACTGGAAAATATGGAGACATACCATTGATGCCAACATTTCCATGCAACAAGGGACCTGAGGTGTTCAAGGGTAAGGTTTTGCATAGCATTGATTATTGTAAACTTGACAAAGAAGCAACTAGTGACCTTGTTAAGGGAAAGAAGGTTGTGGTTGTGGGTTACAAAAAATCAGCTATTGATCTAGCCATGGAATGTGCACAGGCAAACCAAGGACCAGAAGGGCAACCATGCACAATGATCATAAGGAGTTTGCATTGGACACTTCCACATTATAGGATGTGGGGAGTACCATTTTTCATGTTCTATGCAACAAGATCCGCACAGTTCCTCCACCAAACACCAAATCAGGGTTTACTTAAAAGTCTTTTATGCCTCCTATTATCTCCAATGAGACGTGGGATTTCAAAGTTCATAGAGTCCTACTTGCTGTGGAAACTTCCGTTTGAGAAGTATGGATTGAAACCAGAACACCCATTTGAGGAAGATTTTGCATCTTGTCAAATAGCTATAACACCAGAGAGTTTTTTCAATGAGGCTGATAAGGGAAAAATAATCTTCAAAAGAGCATCAAAGTGGTGGTTTTGTAATGAAGGAATTGAATTTGATGACAACACTAAAATTGATGCTGATGTTGTTCTCCTTGCAACTGGTTATGATGGGAAAAAGAAGCTCAAAACACTTTTGCCTGAGCCTTTCTGTAGCTTGTTGGAATACCCTACTGGTACCATGCCACTATACAGGGGAACCGTCCATCCATCGATTCCAAACATGGCCTTTGTGGGTTATGTTGAGAGTGTTTCAAATCTTTACACATCCGAGATACGTTCCATGTGGCTTGCTGGTCTATTAGATAACAAATTTAAGCTTCCAAATGCTGAGAAAATGCTTTCACAAACAATTAAGGACATGGAAACAATGAAAAAGTCTACAAGGTTTTACAAAAGGAACTGCATCACAACATTTGGTATCAATCATAATGATGAAATATGTGAAGATTTGGGTTGGCATACTTGGAGGAAGAAGAACTTCATCAAAGAAGCATTTACTCCTTACACTGCTGGTGACTATAAGAAGAAAGATTGA

Protein sequence

>Msa0285420

MATQGNLPIIVSRIGIIGAGVSGLAVAKQLSHYNPIVFEATNSIGGVWRHCSYRCTKLQSQTWNYEFSDFPWPKRESTDYPSHAEILEYLHIYAVQFDLFKYVKFNTKVVEMKFVRDKEGFDFGRLPNDHGNPLPGRPVWELSVQTNESDAIQRYHFEFVAVCTGKYGDIPLMPTFPCNKGPEVFKGKVLHSIDYCKLDKEATSDLVKGKKVVVVGYKKSAIDLAMECAQANQGPEGQPCTMIIRSLHWTLPHYRMWGVPFFMFYATRSAQFLHQTPNQGLLKSLLCLLLSPMRRGISKFIESYLLWKLPFEKYGLKPEHPFEEDFASCQIAITPESFFNEADKGKIIFKRASKWWFCNEGIEFDDNTKIDADVVLLATGYDGKKKLKTLLPEPFCSLLEYPTGTMPLYRGTVHPSIPNMAFVGYVESVSNLYTSEIRSMWLAGLLDNKFKLPNAEKMLSQTIKDMETMKKSTRFYKRNCITTFGINHNDEICEDLGWHTWRKKNFIKEAFTPYTAGDYKKKD*