Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1095510 | XP_003621892.1 | 90.981 | 377 | 27 | 4 | 1 | 374 | 1 | 373 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1095510 | sp|Q9M2U1|DOF36_ARATH | 39.643 | 280 | 119 | 12 | 1 | 274 | 1 | 236 | 5.15e-41 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1095510 | G7KXU5 | 90.981 | 377 | 27 | 4 | 1 | 374 | 1 | 373 | 0.0 | 622 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1095510 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1095510 | 0.806333 | 8.656128e-50 | -8.615850e-47 |
| Msa0011500 | Msa1095510 | 0.815466 | 9.113070e-52 | -8.615850e-47 |
| Msa0014570 | Msa1095510 | 0.816212 | 6.211485e-52 | -8.615850e-47 |
| Msa0061340 | Msa1095510 | 0.810544 | 1.093220e-50 | -8.615850e-47 |
| Msa0074240 | Msa1095510 | 0.800322 | 1.521715e-48 | -8.615850e-47 |
| Msa0626510 | Msa1095510 | 0.808976 | 2.376152e-50 | -8.615850e-47 |
| Msa0637900 | Msa1095510 | 0.813398 | 2.611948e-51 | -8.615850e-47 |
| Msa0662340 | Msa1095510 | 0.832201 | 1.081913e-55 | -8.615850e-47 |
| Msa0685750 | Msa1095510 | 0.808236 | 3.419316e-50 | -8.615850e-47 |
| Msa0731940 | Msa1095510 | 0.806474 | 8.083358e-50 | -8.615850e-47 |
| Msa0733390 | Msa1095510 | 0.804797 | 1.818113e-49 | -8.615850e-47 |
| Msa0816710 | Msa1095510 | 0.802285 | 6.031490e-49 | -8.615850e-47 |
| Msa0824660 | Msa1095510 | 0.803569 | 3.274968e-49 | -8.615850e-47 |
| Msa0828560 | Msa1095510 | 0.824492 | 7.839896e-54 | -8.615850e-47 |
| Msa0152400 | Msa1095510 | 0.805928 | 1.053096e-49 | -8.615850e-47 |
| Msa0225860 | Msa1095510 | 0.800536 | 1.376332e-48 | -8.615850e-47 |
| Msa0378720 | Msa1095510 | 0.821936 | 3.096667e-53 | -8.615850e-47 |
| Msa0393440 | Msa1095510 | 0.809481 | 1.851928e-50 | -8.615850e-47 |
| Msa0422280 | Msa1095510 | 0.805105 | 1.567451e-49 | -8.615850e-47 |
| Msa0471670 | Msa1095510 | 0.804437 | 2.161197e-49 | -8.615850e-47 |
| Msa1004840 | Msa1095510 | 0.804136 | 2.497125e-49 | -8.615850e-47 |
| Msa1030970 | Msa1095510 | 0.803004 | 4.286259e-49 | -8.615850e-47 |
| Msa1031930 | Msa1095510 | 0.829222 | 5.808333e-55 | -8.615850e-47 |
| Msa1035960 | Msa1095510 | 0.832502 | 9.113669e-56 | -8.615850e-47 |
| Msa1038080 | Msa1095510 | 0.803448 | 3.469570e-49 | -8.615850e-47 |
| Msa1075540 | Msa1095510 | 0.800462 | 1.425217e-48 | -8.615850e-47 |
| Msa1095510 | Msa1108790 | 0.802869 | 4.571175e-49 | -8.615850e-47 |
| Msa1095510 | Msa1121490 | 0.806495 | 8.000373e-50 | -8.615850e-47 |
| Msa1095510 | Msa1122520 | 0.836325 | 9.999156e-57 | -8.615850e-47 |
| Msa1095510 | Msa1158310 | 0.808530 | 2.960869e-50 | -8.615850e-47 |
| Msa1095510 | Msa1199570 | 0.802930 | 4.439738e-49 | -8.615850e-47 |
| Msa1095510 | Msa1276660 | 0.807988 | 3.863128e-50 | -8.615850e-47 |
| Msa1095510 | Msa1307210 | 0.824758 | 6.786118e-54 | -8.615850e-47 |
| Msa1095510 | Msa1368430 | 0.821099 | 4.834928e-53 | -8.615850e-47 |
| Msa1095510 | Msa1413610 | 0.812773 | 3.582040e-51 | -8.615850e-47 |
| Msa1095510 | Msa1440740 | 0.804687 | 1.917039e-49 | -8.615850e-47 |
| Msa1095510 | Msa1464810 | 0.803233 | 3.844543e-49 | -8.615850e-47 |
| Msa1095510 | Msa1466540 | 0.809912 | 1.496263e-50 | -8.615850e-47 |
| Msa0258310 | Msa1095510 | 0.814004 | 1.920584e-51 | -8.615850e-47 |
| Msa0264780 | Msa1095510 | 0.802739 | 4.863793e-49 | -8.615850e-47 |
| Msa0265850 | Msa1095510 | 0.801949 | 7.072110e-49 | -8.615850e-47 |
| Msa0300270 | Msa1095510 | 0.814803 | 1.278855e-51 | -8.615850e-47 |
| Msa0300320 | Msa1095510 | 0.812534 | 4.040306e-51 | -8.615850e-47 |
| Msa0358890 | Msa1095510 | 0.834813 | 2.412943e-56 | -8.615850e-47 |
| Msa0363200 | Msa1095510 | 0.806423 | 8.284151e-50 | -8.615850e-47 |
| Msa0488790 | Msa1095510 | 0.801244 | 9.867823e-49 | -8.615850e-47 |
| Msa0498060 | Msa1095510 | 0.820351 | 7.180463e-53 | -8.615850e-47 |
| Msa0598160 | Msa1095510 | 0.808549 | 2.933363e-50 | -8.615850e-47 |
| Msa0856920 | Msa1095510 | 0.807770 | 4.297705e-50 | -8.615850e-47 |
| Msa0861510 | Msa1095510 | 0.825010 | 5.916889e-54 | -8.615850e-47 |
| Msa0861530 | Msa1095510 | 0.815273 | 1.005779e-51 | -8.615850e-47 |
| Msa0861600 | Msa1095510 | 0.830205 | 3.347209e-55 | -8.615850e-47 |
| Msa0866520 | Msa1095510 | 0.803326 | 3.677321e-49 | -8.615850e-47 |
| Msa0875290 | Msa1095510 | 0.816604 | 5.077463e-52 | -8.615850e-47 |
| Msa0880950 | Msa1095510 | 0.800591 | 1.341223e-48 | -8.615850e-47 |
| Msa0898750 | Msa1095510 | 0.821183 | 4.622578e-53 | -8.615850e-47 |
| Msa0900620 | Msa1095510 | 0.801718 | 7.888124e-49 | -8.615850e-47 |
| Msa0923030 | Msa1095510 | 0.801071 | 1.070585e-48 | -8.615850e-47 |
| Msa0926890 | Msa1095510 | 0.810846 | 9.405946e-51 | -8.615850e-47 |
| Msa0928130 | Msa1095510 | 0.813578 | 2.384820e-51 | -8.615850e-47 |
| Msa0964310 | Msa1095510 | 0.801772 | 7.690178e-49 | -8.615850e-47 |
| Msa0969520 | Msa1095510 | 0.803019 | 4.255556e-49 | -8.615850e-47 |
| Msa0972100 | Msa1095510 | 0.800304 | 1.534474e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1095510 | MtrunA17_Chr7g0223311 | 90.981 | 377 | 27 | 4 | 1 | 374 | 1 | 373 | 0.0 | 622 |
| Msa1095510 | MtrunA17_Chr4g0010151 | 38.547 | 358 | 185 | 11 | 1 | 347 | 1 | 334 | 4.24e-51 | 174 |
| Msa1095510 | MtrunA17_Chr4g0031411 | 40.196 | 306 | 132 | 12 | 1 | 291 | 1 | 270 | 6.59e-46 | 160 |
| Msa1095510 | MtrunA17_Chr7g0237921 | 35.676 | 370 | 191 | 12 | 1 | 362 | 1 | 331 | 1.07e-45 | 160 |
| Msa1095510 | MtrunA17_Chr2g0328021 | 40.288 | 278 | 95 | 12 | 1 | 274 | 1 | 211 | 4.24e-44 | 154 |
| Msa1095510 | MtrunA17_Chr8g0374251 | 77.778 | 63 | 14 | 0 | 78 | 140 | 69 | 131 | 1.38e-31 | 122 |
| Msa1095510 | MtrunA17_Chr8g0374111 | 59.551 | 89 | 29 | 2 | 79 | 161 | 31 | 118 | 3.30e-30 | 115 |
| Msa1095510 | MtrunA17_Chr8g0367161 | 56.044 | 91 | 30 | 1 | 51 | 141 | 16 | 96 | 7.96e-30 | 117 |
| Msa1095510 | MtrunA17_Chr3g0127201 | 62.353 | 85 | 27 | 1 | 47 | 131 | 2 | 81 | 2.27e-29 | 115 |
| Msa1095510 | MtrunA17_Chr3g0117601 | 58.889 | 90 | 32 | 2 | 38 | 127 | 27 | 111 | 4.00e-29 | 115 |
| Msa1095510 | MtrunA17_Chr2g0282441 | 56.311 | 103 | 37 | 2 | 62 | 157 | 11 | 112 | 7.96e-29 | 114 |
| Msa1095510 | MtrunA17_Chr8g0341671 | 66.667 | 75 | 24 | 1 | 59 | 132 | 1 | 75 | 1.09e-28 | 111 |
| Msa1095510 | MtrunA17_Chr5g0411951 | 88.000 | 50 | 6 | 0 | 78 | 127 | 44 | 93 | 1.68e-28 | 113 |
| Msa1095510 | MtrunA17_Chr3g0126201 | 47.414 | 116 | 50 | 2 | 76 | 191 | 50 | 154 | 1.75e-28 | 113 |
| Msa1095510 | MtrunA17_Chr4g0061761 | 86.538 | 52 | 7 | 0 | 76 | 127 | 39 | 90 | 1.81e-28 | 113 |
| Msa1095510 | MtrunA17_Chr4g0030051 | 83.333 | 54 | 9 | 0 | 76 | 129 | 40 | 93 | 5.79e-28 | 111 |
| Msa1095510 | MtrunA17_Chr8g0346551 | 72.464 | 69 | 14 | 1 | 79 | 142 | 26 | 94 | 1.67e-27 | 109 |
| Msa1095510 | MtrunA17_Chr1g0188851 | 75.862 | 58 | 14 | 0 | 76 | 133 | 42 | 99 | 3.25e-27 | 109 |
| Msa1095510 | MtrunA17_Chr2g0326001 | 78.571 | 56 | 12 | 0 | 76 | 131 | 39 | 94 | 4.58e-27 | 108 |
| Msa1095510 | MtrunA17_Chr2g0308011 | 88.000 | 50 | 6 | 0 | 76 | 125 | 36 | 85 | 7.76e-27 | 106 |
| Msa1095510 | MtrunA17_Chr2g0282511 | 86.000 | 50 | 7 | 0 | 76 | 125 | 44 | 93 | 1.74e-26 | 107 |
| Msa1095510 | MtrunA17_Chr1g0177251 | 79.245 | 53 | 11 | 0 | 79 | 131 | 14 | 66 | 4.09e-26 | 106 |
| Msa1095510 | MtrunA17_Chr2g0282051 | 69.697 | 66 | 18 | 1 | 69 | 134 | 38 | 101 | 6.39e-26 | 105 |
| Msa1095510 | MtrunA17_Chr4g0047761 | 73.770 | 61 | 14 | 1 | 74 | 134 | 69 | 127 | 4.21e-25 | 103 |
| Msa1095510 | MtrunA17_Chr6g0453321 | 76.471 | 51 | 12 | 0 | 79 | 129 | 138 | 188 | 1.58e-23 | 101 |
| Msa1095510 | MtrunA17_Chr2g0283811 | 76.000 | 50 | 12 | 0 | 79 | 128 | 49 | 98 | 1.85e-23 | 95.5 |
| Msa1095510 | MtrunA17_Chr8g0355261 | 48.352 | 91 | 36 | 2 | 52 | 131 | 82 | 172 | 7.23e-23 | 99.4 |
| Msa1095510 | MtrunA17_Chr4g0042481 | 56.962 | 79 | 23 | 2 | 79 | 157 | 124 | 191 | 8.07e-23 | 99.4 |
| Msa1095510 | MtrunA17_Chr7g0217581 | 74.510 | 51 | 13 | 0 | 79 | 129 | 234 | 284 | 1.20e-22 | 99.8 |
| Msa1095510 | MtrunA17_Chr3g0092111 | 67.213 | 61 | 16 | 1 | 79 | 139 | 138 | 194 | 1.83e-22 | 98.6 |
| Msa1095510 | MtrunA17_Chr6g0460721 | 71.154 | 52 | 15 | 0 | 78 | 129 | 90 | 141 | 5.52e-22 | 95.5 |
| Msa1095510 | MtrunA17_Chr5g0417571 | 70.588 | 51 | 15 | 0 | 79 | 129 | 140 | 190 | 6.72e-22 | 95.1 |
| Msa1095510 | MtrunA17_Chr7g0254161 | 67.241 | 58 | 18 | 1 | 78 | 135 | 102 | 158 | 9.02e-22 | 95.9 |
| Msa1095510 | MtrunA17_Chr5g0417601 | 68.966 | 58 | 17 | 1 | 79 | 136 | 142 | 198 | 1.40e-21 | 95.1 |
| Msa1095510 | MtrunA17_Chr5g0417551 | 37.500 | 176 | 88 | 7 | 24 | 192 | 79 | 239 | 1.56e-21 | 94.7 |
| Msa1095510 | MtrunA17_Chr6g0460731 | 67.308 | 52 | 17 | 0 | 78 | 129 | 97 | 148 | 2.89e-21 | 94.0 |
| Msa1095510 | MtrunA17_Chr5g0417561 | 43.548 | 124 | 47 | 4 | 79 | 192 | 121 | 231 | 1.21e-20 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1095510 | AT3G55370.2 | 37.069 | 348 | 149 | 17 | 1 | 325 | 1 | 301 | 5.40e-43 | 153 |
| Msa1095510 | AT3G55370.1 | 39.643 | 280 | 119 | 12 | 1 | 274 | 1 | 236 | 5.23e-42 | 150 |
| Msa1095510 | AT3G55370.3 | 38.996 | 259 | 113 | 10 | 17 | 274 | 67 | 281 | 1.28e-37 | 139 |
| Msa1095510 | AT2G37590.1 | 48.299 | 147 | 60 | 3 | 1 | 133 | 1 | 145 | 3.88e-36 | 134 |
| Msa1095510 | AT1G07640.2 | 70.732 | 82 | 22 | 1 | 53 | 134 | 55 | 134 | 6.42e-34 | 128 |
| Msa1095510 | AT1G07640.3 | 70.732 | 82 | 22 | 1 | 53 | 134 | 63 | 142 | 8.17e-34 | 128 |
| Msa1095510 | AT1G07640.1 | 72.727 | 77 | 19 | 1 | 58 | 134 | 4 | 78 | 8.86e-34 | 127 |
| Msa1095510 | AT2G28810.1 | 32.383 | 386 | 164 | 12 | 1 | 350 | 1 | 325 | 3.36e-33 | 127 |
| Msa1095510 | AT5G02460.1 | 70.130 | 77 | 21 | 1 | 55 | 131 | 75 | 149 | 3.36e-32 | 125 |
| Msa1095510 | AT2G28810.2 | 34.768 | 302 | 130 | 8 | 61 | 350 | 62 | 308 | 1.11e-31 | 122 |
| Msa1095510 | AT1G51700.1 | 79.032 | 62 | 13 | 0 | 78 | 139 | 34 | 95 | 8.13e-31 | 116 |
| Msa1095510 | AT5G60200.1 | 58.889 | 90 | 31 | 2 | 76 | 161 | 54 | 141 | 2.96e-30 | 117 |
| Msa1095510 | AT5G65590.1 | 80.328 | 61 | 12 | 0 | 78 | 138 | 42 | 102 | 3.93e-30 | 118 |
| Msa1095510 | AT1G21340.1 | 56.322 | 87 | 37 | 1 | 49 | 134 | 9 | 95 | 4.32e-30 | 116 |
| Msa1095510 | AT2G28510.1 | 77.273 | 66 | 13 | 1 | 73 | 138 | 44 | 107 | 6.09e-30 | 117 |
| Msa1095510 | AT5G66940.1 | 52.294 | 109 | 45 | 2 | 79 | 180 | 34 | 142 | 9.06e-30 | 114 |
| Msa1095510 | AT5G60850.1 | 56.989 | 93 | 33 | 2 | 67 | 152 | 38 | 130 | 1.39e-29 | 116 |
| Msa1095510 | AT3G21270.1 | 83.929 | 56 | 9 | 0 | 78 | 133 | 30 | 85 | 2.77e-29 | 112 |
| Msa1095510 | AT5G62940.1 | 88.235 | 51 | 6 | 0 | 77 | 127 | 73 | 123 | 3.93e-28 | 113 |
| Msa1095510 | AT3G45610.1 | 50.485 | 103 | 40 | 2 | 39 | 141 | 10 | 101 | 6.82e-28 | 110 |
| Msa1095510 | AT4G38000.1 | 71.212 | 66 | 19 | 0 | 78 | 143 | 42 | 107 | 2.02e-27 | 108 |
| Msa1095510 | AT3G50410.1 | 75.439 | 57 | 14 | 0 | 79 | 135 | 32 | 88 | 2.56e-27 | 108 |
| Msa1095510 | AT1G28310.1 | 75.439 | 57 | 14 | 0 | 78 | 134 | 28 | 84 | 4.48e-27 | 109 |
| Msa1095510 | AT1G28310.2 | 75.439 | 57 | 14 | 0 | 78 | 134 | 52 | 108 | 6.92e-27 | 109 |
| Msa1095510 | AT3G52440.1 | 57.143 | 91 | 32 | 2 | 72 | 162 | 20 | 103 | 7.57e-27 | 107 |
| Msa1095510 | AT3G52440.2 | 64.474 | 76 | 24 | 2 | 73 | 146 | 40 | 114 | 1.16e-26 | 107 |
| Msa1095510 | AT4G00940.1 | 60.274 | 73 | 29 | 0 | 59 | 131 | 50 | 122 | 1.91e-25 | 104 |
| Msa1095510 | AT4G00940.3 | 60.274 | 73 | 29 | 0 | 59 | 131 | 50 | 122 | 1.91e-25 | 104 |
| Msa1095510 | AT4G00940.2 | 60.274 | 73 | 29 | 0 | 59 | 131 | 50 | 122 | 1.91e-25 | 104 |
| Msa1095510 | AT4G21050.1 | 64.706 | 68 | 23 | 1 | 76 | 143 | 23 | 89 | 2.51e-25 | 102 |
| Msa1095510 | AT3G61850.1 | 62.857 | 70 | 26 | 0 | 79 | 148 | 76 | 145 | 2.60e-25 | 104 |
| Msa1095510 | AT3G61850.2 | 62.857 | 70 | 26 | 0 | 79 | 148 | 64 | 133 | 2.65e-25 | 104 |
| Msa1095510 | AT3G61850.3 | 62.857 | 70 | 26 | 0 | 79 | 148 | 64 | 133 | 2.65e-25 | 104 |
| Msa1095510 | AT3G61850.5 | 62.857 | 70 | 26 | 0 | 79 | 148 | 64 | 133 | 3.84e-25 | 104 |
| Msa1095510 | AT3G61850.4 | 62.857 | 70 | 26 | 0 | 79 | 148 | 76 | 145 | 3.91e-25 | 104 |
| Msa1095510 | AT4G24060.1 | 75.000 | 56 | 14 | 0 | 76 | 131 | 52 | 107 | 5.02e-25 | 104 |
| Msa1095510 | AT1G47655.1 | 75.000 | 52 | 13 | 0 | 74 | 125 | 26 | 77 | 3.30e-23 | 96.7 |
| Msa1095510 | AT2G46590.1 | 84.783 | 46 | 7 | 0 | 79 | 124 | 70 | 115 | 4.05e-23 | 99.4 |
| Msa1095510 | AT2G46590.2 | 84.783 | 46 | 7 | 0 | 79 | 124 | 82 | 127 | 4.82e-23 | 99.4 |
| Msa1095510 | AT2G34140.1 | 46.939 | 98 | 34 | 2 | 34 | 131 | 32 | 111 | 5.80e-23 | 94.7 |
| Msa1095510 | AT1G29160.1 | 75.472 | 53 | 12 | 1 | 79 | 131 | 64 | 115 | 6.78e-23 | 94.7 |
| Msa1095510 | AT3G47500.1 | 74.510 | 51 | 13 | 0 | 79 | 129 | 112 | 162 | 6.87e-23 | 100 |
| Msa1095510 | AT1G64620.1 | 59.155 | 71 | 24 | 1 | 56 | 126 | 33 | 98 | 9.44e-23 | 98.2 |
| Msa1095510 | AT1G69570.1 | 74.510 | 51 | 13 | 0 | 79 | 129 | 134 | 184 | 1.97e-22 | 98.2 |
| Msa1095510 | AT5G39660.3 | 55.000 | 80 | 25 | 2 | 79 | 158 | 140 | 208 | 2.74e-22 | 98.2 |
| Msa1095510 | AT5G39660.1 | 55.000 | 80 | 25 | 2 | 79 | 158 | 140 | 208 | 2.74e-22 | 98.2 |
| Msa1095510 | AT5G39660.2 | 55.000 | 80 | 25 | 2 | 79 | 158 | 140 | 208 | 2.74e-22 | 98.2 |
| Msa1095510 | AT5G62430.1 | 70.588 | 51 | 15 | 0 | 79 | 129 | 56 | 106 | 7.01e-22 | 95.1 |
| Msa1095510 | AT4G21040.1 | 63.077 | 65 | 22 | 1 | 79 | 143 | 27 | 89 | 1.25e-21 | 92.8 |
| Msa1095510 | AT1G26790.1 | 70.588 | 51 | 15 | 0 | 79 | 129 | 113 | 163 | 1.65e-21 | 95.1 |
| Msa1095510 | AT4G21080.1 | 61.538 | 65 | 23 | 1 | 79 | 143 | 27 | 89 | 1.29e-20 | 90.5 |
| Msa1095510 | AT4G21030.1 | 57.692 | 52 | 22 | 0 | 79 | 130 | 23 | 74 | 3.03e-14 | 71.2 |
Find 103 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAACTTGTCGTCGTTAT+TGG | 0.174969 | 7_3:+18450614 | Msa1095510:CDS |
| GAAATAGTAATGATCTATTT+TGG | 0.191335 | 7_3:+18451319 | Msa1095510:CDS |
| CTAAACTTTGTATTTCTAAA+TGG | 0.208729 | 7_3:+18451607 | Msa1095510:three_prime_UTR |
| CAAATTGGATTATTTCAATT+TGG | 0.211059 | 7_3:+18451135 | Msa1095510:CDS |
| AGTAATTTGCAACCACAAAT+TGG | 0.232158 | 7_3:+18451120 | Msa1095510:CDS |
| ATCCTCAAATCTAGTGCTTT+TGG | 0.236518 | 7_3:+18451415 | Msa1095510:exon |
| GCAAATTCTTCTTCTAATAA+TGG | 0.247534 | 7_3:+18450799 | Msa1095510:CDS |
| GTGCTGCTGCAGCATCATTC+TGG | 0.303371 | 7_3:-18450510 | None:intergenic |
| ATTAGTTCACTTGCTAACTA+TGG | 0.312768 | 7_3:+18451515 | Msa1095510:three_prime_UTR |
| GAACGAAACAAATTTCTTTG+TGG | 0.335906 | 7_3:-18451177 | None:intergenic |
| CTTGATATTGCGGTAAAATC+AGG | 0.337125 | 7_3:+18451703 | Msa1095510:three_prime_UTR |
| TGAGGGCATTGGTTCTTTGT+TGG | 0.348674 | 7_3:+18450921 | Msa1095510:CDS |
| CAATTTGGTGGAGAAAATAA+TGG | 0.350809 | 7_3:+18451150 | Msa1095510:CDS |
| TGGAGATGATCGTTATGATT+AGG | 0.351307 | 7_3:-18450736 | None:intergenic |
| CTTGGTAGTGGTTCTTCAAT+TGG | 0.353175 | 7_3:+18450988 | Msa1095510:CDS |
| CAGGGTATAATTAGAGTGTT+AGG | 0.368380 | 7_3:+18451489 | Msa1095510:three_prime_UTR |
| TTTAATCAGCAAGTAGGAAT+TGG | 0.368947 | 7_3:+18450349 | Msa1095510:intron |
| TGATGAACTTGTAGCGAATT+CGG | 0.372887 | 7_3:-18451069 | None:intergenic |
| CAGGTCGGTGCCGGTGCTGC+TGG | 0.390469 | 7_3:+18450757 | Msa1095510:CDS |
| AATTGAAATAATCCAATTTG+TGG | 0.391831 | 7_3:-18451132 | None:intergenic |
| CTGTTGGAGGTGGTTGTAGA+AGG | 0.393447 | 7_3:+18450665 | Msa1095510:CDS |
| CATTGTTCACCAATGCCATT+TGG | 0.402281 | 7_3:-18451039 | None:intergenic |
| AAGAAATTTGTTTCGTTCGA+AGG | 0.419961 | 7_3:+18451182 | Msa1095510:CDS |
| GTGTTTGTTGATTCACATCT+TGG | 0.421696 | 7_3:-18450541 | None:intergenic |
| TTGGGTGGATCTAGATAGAT+TGG | 0.437111 | 7_3:-18449996 | None:intergenic |
| TCTATCTAGATCCACCCAAC+TGG | 0.440222 | 7_3:+18450000 | Msa1095510:CDS |
| ATTGGATTATTTCAATTTGG+TGG | 0.443223 | 7_3:+18451138 | Msa1095510:CDS |
| TATTCTTCAAGTGTTAGTAT+TGG | 0.447776 | 7_3:+18451210 | Msa1095510:CDS |
| TAACACACACATATAGCTAA+TGG | 0.455892 | 7_3:-18451555 | None:intergenic |
| CAGCAGCACCGGCACCGACC+TGG | 0.456075 | 7_3:-18450756 | None:intergenic |
| AACCAAAAGCACTAGATTTG+AGG | 0.456139 | 7_3:-18451417 | None:intergenic |
| TCAAGTTAATACAGTTAAAG+TGG | 0.456282 | 7_3:+18451242 | Msa1095510:CDS |
| GGTTGCAAATTACTCAAGAA+AGG | 0.462145 | 7_3:-18451111 | None:intergenic |
| GTTACAAATGGAAATTGTGT+TGG | 0.468460 | 7_3:-18450862 | None:intergenic |
| CGATGTAAAGAGGTTACAAA+TGG | 0.474364 | 7_3:-18450874 | None:intergenic |
| CTTCTACAACCACCTCCAAC+AGG | 0.475660 | 7_3:-18450664 | None:intergenic |
| GCTCGATCGATCATTGATAC+TGG | 0.475749 | 7_3:-18450469 | None:intergenic |
| CGAAACGTTCCTGTTGGAGG+TGG | 0.475928 | 7_3:+18450655 | Msa1095510:CDS |
| TCTTCAATTGGTAATGGTAA+TGG | 0.476358 | 7_3:+18451000 | Msa1095510:CDS |
| ATCATATATAGAAATGATCC+AGG | 0.478941 | 7_3:+18451470 | Msa1095510:three_prime_UTR |
| TCCACCCAACTGGACACAAC+AGG | 0.479085 | 7_3:+18450010 | Msa1095510:CDS |
| AGTGGTTCTTCAATTGGTAA+TGG | 0.485640 | 7_3:+18450994 | Msa1095510:CDS |
| CTTCGAAACGTTCCTGTTGG+AGG | 0.496892 | 7_3:+18450652 | Msa1095510:CDS |
| AGCTATATGTGTGTGTTATG+AGG | 0.506294 | 7_3:+18451560 | Msa1095510:three_prime_UTR |
| CTAGATAGATTGGAAGGGAG+GGG | 0.506776 | 7_3:-18449986 | None:intergenic |
| GTTGAGTTTCAACTTGGTAG+TGG | 0.507591 | 7_3:+18450976 | Msa1095510:CDS |
| ATATTCATCATTCTAAGTTG+TGG | 0.509679 | 7_3:+18451642 | Msa1095510:three_prime_UTR |
| ATACTGGTCTTCTAGACCCT+TGG | 0.510341 | 7_3:-18450453 | None:intergenic |
| AGTTATGTTTCTGAGGGCAT+TGG | 0.510514 | 7_3:+18450910 | Msa1095510:CDS |
| GTCGCTTTGACGATGTAAAG+AGG | 0.511568 | 7_3:-18450884 | None:intergenic |
| GTTGCAAATTACTCAAGAAA+GGG | 0.514735 | 7_3:-18451110 | None:intergenic |
| GGAAATTGTGTTGGAAAATG+AGG | 0.514769 | 7_3:-18450853 | None:intergenic |
| CACTGCGAACCTTGATATTG+CGG | 0.516181 | 7_3:+18451693 | Msa1095510:three_prime_UTR |
| TGGATATGTGAGTGTGTGTG+TGG | 0.517281 | 7_3:-18449915 | None:intergenic |
| CAGCAAGTAGGAATTGGTAT+TGG | 0.517909 | 7_3:+18450355 | Msa1095510:intron |
| GATCATCTCCAGGTCGGTGC+CGG | 0.519214 | 7_3:+18450748 | Msa1095510:CDS |
| GGCTCTTTGTTGATACCAAA+TGG | 0.520108 | 7_3:+18451024 | Msa1095510:CDS |
| GAAGCTGATGGCAGCTACCA+AGG | 0.525317 | 7_3:+18450436 | Msa1095510:CDS |
| CTGGTGGTTCTAGCTCAGCA+AGG | 0.527734 | 7_3:+18450776 | Msa1095510:CDS |
| CGACAATAGTTATGTTTCTG+AGG | 0.529372 | 7_3:+18450903 | Msa1095510:CDS |
| TCTAGATAGATTGGAAGGGA+GGG | 0.529881 | 7_3:-18449987 | None:intergenic |
| TATGTGAGTGTGTGTGTGGG+TGG | 0.537590 | 7_3:-18449911 | None:intergenic |
| GCTAGAACCACCAGCAGCAC+CGG | 0.537679 | 7_3:-18450767 | None:intergenic |
| AATACCTGTTGTGTCCAGTT+GGG | 0.542054 | 7_3:-18450014 | None:intergenic |
| ATCTAGATAGATTGGAAGGG+AGG | 0.542287 | 7_3:-18449988 | None:intergenic |
| GCACTTCGAAACGTTCCTGT+TGG | 0.543248 | 7_3:+18450649 | Msa1095510:CDS |
| ACTTTAACTGTATTAACTTG+AGG | 0.543542 | 7_3:-18451240 | None:intergenic |
| ACCTGTTGTGTCCAGTTGGG+TGG | 0.544400 | 7_3:-18450011 | None:intergenic |
| TCTGTCACTGTTGAAGCTGA+TGG | 0.547262 | 7_3:+18450424 | Msa1095510:CDS |
| ACTAATTCTAATGTGAATGT+TGG | 0.552195 | 7_3:+18450826 | Msa1095510:CDS |
| GGATATGTGAGTGTGTGTGT+GGG | 0.553399 | 7_3:-18449914 | None:intergenic |
| CAAGGTGGTGAAGTGAAACT+AGG | 0.554007 | 7_3:-18451390 | None:intergenic |
| CACTAGATTTGAGGATCACA+AGG | 0.554201 | 7_3:-18451408 | None:intergenic |
| GCTATATGTGTGTGTTATGA+GGG | 0.556952 | 7_3:+18451561 | Msa1095510:three_prime_UTR |
| GACAATAGTTATGTTTCTGA+GGG | 0.557481 | 7_3:+18450904 | Msa1095510:CDS |
| AAATAATTTAATCAGCAAGT+AGG | 0.559549 | 7_3:+18450343 | Msa1095510:intron |
| GTGGAAGAAAACAATCATCA+AGG | 0.560168 | 7_3:+18451261 | Msa1095510:CDS |
| GTGGATCTAGATAGATTGGA+AGG | 0.563359 | 7_3:-18449992 | None:intergenic |
| TAATCATAACGATCATCTCC+AGG | 0.573464 | 7_3:+18450738 | Msa1095510:CDS |
| TAAAAGAGAAAGCTTAGCCA+TGG | 0.573718 | 7_3:+18449959 | Msa1095510:exon |
| TGTGTTATGAGGGAAGATAA+AGG | 0.574143 | 7_3:+18451571 | Msa1095510:three_prime_UTR |
| ACTAATGTTGAGTTTCAACT+TGG | 0.576736 | 7_3:+18450970 | Msa1095510:CDS |
| GTCGGTGCCGGTGCTGCTGG+TGG | 0.577708 | 7_3:+18450760 | Msa1095510:CDS |
| TCAATTGGTAATGGTAATGG+TGG | 0.579040 | 7_3:+18451003 | Msa1095510:CDS |
| TAATACCTGTTGTGTCCAGT+TGG | 0.582298 | 7_3:-18450015 | None:intergenic |
| TCGTTATGATTAGGTTTCAG+AGG | 0.584218 | 7_3:-18450727 | None:intergenic |
| CGTCGTTATTGGACTAGAGG+TGG | 0.585783 | 7_3:+18450625 | Msa1095510:CDS |
| AAGCTGATGGCAGCTACCAA+GGG | 0.593247 | 7_3:+18450437 | Msa1095510:CDS |
| CAAATGGCATTGGTGAACAA+TGG | 0.594140 | 7_3:+18451040 | Msa1095510:CDS |
| TGTCGTCGTTATTGGACTAG+AGG | 0.602398 | 7_3:+18450622 | Msa1095510:CDS |
| ATGGCATTGGTGAACAATGG+AGG | 0.607659 | 7_3:+18451043 | Msa1095510:CDS |
| AATGGAAATGGAAATGGAAG+TGG | 0.608244 | 7_3:+18451342 | Msa1095510:CDS |
| GAAGTGGTAATGAAAATGCA+TGG | 0.613061 | 7_3:+18451358 | Msa1095510:CDS |
| TTGTTGATACCAAATGGCAT+TGG | 0.626903 | 7_3:+18451030 | Msa1095510:CDS |
| CTAACACTCTAATTATACCC+TGG | 0.627406 | 7_3:-18451488 | None:intergenic |
| GATAGCGGTTGCATAGCTGA+TGG | 0.634025 | 7_3:-18450388 | None:intergenic |
| TGGAAGGGAGGGGAAGACCA+TGG | 0.634957 | 7_3:-18449976 | None:intergenic |
| TGGTGGTTCTAGCTCAGCAA+GGG | 0.640666 | 7_3:+18450777 | Msa1095510:CDS |
| TGGATCTAGATAGATTGGAA+GGG | 0.667798 | 7_3:-18449991 | None:intergenic |
| GACATCGTTGAAGCTGATAG+CGG | 0.680206 | 7_3:-18450403 | None:intergenic |
| CATAACGATCATCTCCAGGT+CGG | 0.682152 | 7_3:+18450742 | Msa1095510:CDS |
| TCATATATAGAAATGATCCA+GGG | 0.708477 | 7_3:+18451471 | Msa1095510:three_prime_UTR |
| TAGATTTGAGGATCACAAGG+TGG | 0.736101 | 7_3:-18451405 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGTTTTGATGAATTTTT+TGG | - | chr7_3:18449938-18449957 | None:intergenic | 15.0% |
| !!! | TATTTTATAACAAAAGTGTA+AGG | - | chr7_3:18450328-18450347 | None:intergenic | 15.0% |
| !!! | AAAAGTTTTGATGAATTTTT+TGG | - | chr7_3:18449938-18449957 | None:intergenic | 15.0% |
| !!! | TATTTTATAACAAAAGTGTA+AGG | - | chr7_3:18450328-18450347 | None:intergenic | 15.0% |
| !! | AGAAAGAAAAAGTGAAAAAA+AGG | - | chr7_3:18450115-18450134 | None:intergenic | 20.0% |
| !! | AAATAATTTAATCAGCAAGT+AGG | + | chr7_3:18450343-18450362 | Msa1095510:intron | 20.0% |
| !! | AATTGAAATAATCCAATTTG+TGG | - | chr7_3:18451135-18451154 | None:intergenic | 20.0% |
| !! | CAAATTGGATTATTTCAATT+TGG | + | chr7_3:18451135-18451154 | Msa1095510:CDS | 20.0% |
| !!! | GAAATAGTAATGATCTATTT+TGG | + | chr7_3:18451319-18451338 | Msa1095510:CDS | 20.0% |
| !!! | CTAAACTTTGTATTTCTAAA+TGG | + | chr7_3:18451607-18451626 | Msa1095510:three_prime_UTR | 20.0% |
| !! | AGAAAGAAAAAGTGAAAAAA+AGG | - | chr7_3:18450115-18450134 | None:intergenic | 20.0% |
| !! | AAATAATTTAATCAGCAAGT+AGG | + | chr7_3:18450343-18450362 | Msa1095510:intron | 20.0% |
| !! | AATTGAAATAATCCAATTTG+TGG | - | chr7_3:18451135-18451154 | None:intergenic | 20.0% |
| !! | CAAATTGGATTATTTCAATT+TGG | + | chr7_3:18451135-18451154 | Msa1095510:CDS | 20.0% |
| !!! | GAAATAGTAATGATCTATTT+TGG | + | chr7_3:18451319-18451338 | Msa1095510:CDS | 20.0% |
| !!! | CTAAACTTTGTATTTCTAAA+TGG | + | chr7_3:18451607-18451626 | Msa1095510:three_prime_UTR | 20.0% |
| ! | CAAAGATGGAAAAAAGATAA+AGG | - | chr7_3:18449847-18449866 | None:intergenic | 25.0% |
| ! | AGAAAAAGTGATAACAAAGA+TGG | - | chr7_3:18449861-18449880 | None:intergenic | 25.0% |
| ! | GCAAATTCTTCTTCTAATAA+TGG | + | chr7_3:18450799-18450818 | Msa1095510:CDS | 25.0% |
| ! | ACTAATTCTAATGTGAATGT+TGG | + | chr7_3:18450826-18450845 | Msa1095510:CDS | 25.0% |
| !! | AGTACTATTGCTCATATTTT+TGG | - | chr7_3:18450947-18450966 | None:intergenic | 25.0% |
| ! | ATTGGATTATTTCAATTTGG+TGG | + | chr7_3:18451138-18451157 | Msa1095510:CDS | 25.0% |
| ! | TATTCTTCAAGTGTTAGTAT+TGG | + | chr7_3:18451210-18451229 | Msa1095510:CDS | 25.0% |
| !! | ACTTTAACTGTATTAACTTG+AGG | - | chr7_3:18451243-18451262 | None:intergenic | 25.0% |
| ! | TCAAGTTAATACAGTTAAAG+TGG | + | chr7_3:18451242-18451261 | Msa1095510:CDS | 25.0% |
| !!! | AGTAATGATCTATTTTGGAA+TGG | + | chr7_3:18451324-18451343 | Msa1095510:CDS | 25.0% |
| !!! | GCTTTTGGTTTCTTAATTAA+TGG | + | chr7_3:18451430-18451449 | Msa1095510:three_prime_UTR | 25.0% |
| ! | ATCATATATAGAAATGATCC+AGG | + | chr7_3:18451470-18451489 | Msa1095510:three_prime_UTR | 25.0% |
| ! | TCATATATAGAAATGATCCA+GGG | + | chr7_3:18451471-18451490 | Msa1095510:three_prime_UTR | 25.0% |
| ! | ATATTCATCATTCTAAGTTG+TGG | + | chr7_3:18451642-18451661 | Msa1095510:three_prime_UTR | 25.0% |
| ! | CAAAGATGGAAAAAAGATAA+AGG | - | chr7_3:18449847-18449866 | None:intergenic | 25.0% |
| ! | AGAAAAAGTGATAACAAAGA+TGG | - | chr7_3:18449861-18449880 | None:intergenic | 25.0% |
| ! | GCAAATTCTTCTTCTAATAA+TGG | + | chr7_3:18450799-18450818 | Msa1095510:CDS | 25.0% |
| ! | ACTAATTCTAATGTGAATGT+TGG | + | chr7_3:18450826-18450845 | Msa1095510:CDS | 25.0% |
| !! | AGTACTATTGCTCATATTTT+TGG | - | chr7_3:18450947-18450966 | None:intergenic | 25.0% |
| ! | ATTGGATTATTTCAATTTGG+TGG | + | chr7_3:18451138-18451157 | Msa1095510:CDS | 25.0% |
| ! | TATTCTTCAAGTGTTAGTAT+TGG | + | chr7_3:18451210-18451229 | Msa1095510:CDS | 25.0% |
| !! | ACTTTAACTGTATTAACTTG+AGG | - | chr7_3:18451243-18451262 | None:intergenic | 25.0% |
| ! | TCAAGTTAATACAGTTAAAG+TGG | + | chr7_3:18451242-18451261 | Msa1095510:CDS | 25.0% |
| !!! | AGTAATGATCTATTTTGGAA+TGG | + | chr7_3:18451324-18451343 | Msa1095510:CDS | 25.0% |
| !!! | GCTTTTGGTTTCTTAATTAA+TGG | + | chr7_3:18451430-18451449 | Msa1095510:three_prime_UTR | 25.0% |
| ! | ATCATATATAGAAATGATCC+AGG | + | chr7_3:18451470-18451489 | Msa1095510:three_prime_UTR | 25.0% |
| ! | TCATATATAGAAATGATCCA+GGG | + | chr7_3:18451471-18451490 | Msa1095510:three_prime_UTR | 25.0% |
| ! | ATATTCATCATTCTAAGTTG+TGG | + | chr7_3:18451642-18451661 | Msa1095510:three_prime_UTR | 25.0% |
| AGATTGATTATAGTGTGTGT+AGG | - | chr7_3:18450193-18450212 | None:intergenic | 30.0% | |
| TTTAATCAGCAAGTAGGAAT+TGG | + | chr7_3:18450349-18450368 | Msa1095510:intron | 30.0% | |
| GTTACAAATGGAAATTGTGT+TGG | - | chr7_3:18450865-18450884 | None:intergenic | 30.0% | |
| ! | GACAATAGTTATGTTTCTGA+GGG | + | chr7_3:18450904-18450923 | Msa1095510:CDS | 30.0% |
| ACTAATGTTGAGTTTCAACT+TGG | + | chr7_3:18450970-18450989 | Msa1095510:CDS | 30.0% | |
| !! | TCTTCAATTGGTAATGGTAA+TGG | + | chr7_3:18451000-18451019 | Msa1095510:CDS | 30.0% |
| GTTGCAAATTACTCAAGAAA+GGG | - | chr7_3:18451113-18451132 | None:intergenic | 30.0% | |
| ! | AGTAATTTGCAACCACAAAT+TGG | + | chr7_3:18451120-18451139 | Msa1095510:CDS | 30.0% |
| ! | CAATTTGGTGGAGAAAATAA+TGG | + | chr7_3:18451150-18451169 | Msa1095510:CDS | 30.0% |
| GAACGAAACAAATTTCTTTG+TGG | - | chr7_3:18451180-18451199 | None:intergenic | 30.0% | |
| ! | AAGAAATTTGTTTCGTTCGA+AGG | + | chr7_3:18451182-18451201 | Msa1095510:CDS | 30.0% |
| TTGCCAAAAAATCTCTTGAA+TGG | + | chr7_3:18451291-18451310 | Msa1095510:CDS | 30.0% | |
| !!! | GAACCATTCAAGAGATTTTT+TGG | - | chr7_3:18451297-18451316 | None:intergenic | 30.0% |
| AAAAATCTCTTGAATGGTTC+AGG | + | chr7_3:18451297-18451316 | Msa1095510:CDS | 30.0% | |
| !!! | GATCTATTTTGGAATGGAAA+TGG | + | chr7_3:18451330-18451349 | Msa1095510:CDS | 30.0% |
| !!! | TTTTGGAATGGAAATGGAAA+TGG | + | chr7_3:18451336-18451355 | Msa1095510:CDS | 30.0% |
| ! | ATTAGTTCACTTGCTAACTA+TGG | + | chr7_3:18451515-18451534 | Msa1095510:three_prime_UTR | 30.0% |
| TAACACACACATATAGCTAA+TGG | - | chr7_3:18451558-18451577 | None:intergenic | 30.0% | |
| AGATTGATTATAGTGTGTGT+AGG | - | chr7_3:18450193-18450212 | None:intergenic | 30.0% | |
| TTTAATCAGCAAGTAGGAAT+TGG | + | chr7_3:18450349-18450368 | Msa1095510:intron | 30.0% | |
| GTTACAAATGGAAATTGTGT+TGG | - | chr7_3:18450865-18450884 | None:intergenic | 30.0% | |
| ! | GACAATAGTTATGTTTCTGA+GGG | + | chr7_3:18450904-18450923 | Msa1095510:CDS | 30.0% |
| ACTAATGTTGAGTTTCAACT+TGG | + | chr7_3:18450970-18450989 | Msa1095510:CDS | 30.0% | |
| !! | TCTTCAATTGGTAATGGTAA+TGG | + | chr7_3:18451000-18451019 | Msa1095510:CDS | 30.0% |
| GTTGCAAATTACTCAAGAAA+GGG | - | chr7_3:18451113-18451132 | None:intergenic | 30.0% | |
| ! | AGTAATTTGCAACCACAAAT+TGG | + | chr7_3:18451120-18451139 | Msa1095510:CDS | 30.0% |
| ! | CAATTTGGTGGAGAAAATAA+TGG | + | chr7_3:18451150-18451169 | Msa1095510:CDS | 30.0% |
| GAACGAAACAAATTTCTTTG+TGG | - | chr7_3:18451180-18451199 | None:intergenic | 30.0% | |
| ! | AAGAAATTTGTTTCGTTCGA+AGG | + | chr7_3:18451182-18451201 | Msa1095510:CDS | 30.0% |
| TTGCCAAAAAATCTCTTGAA+TGG | + | chr7_3:18451291-18451310 | Msa1095510:CDS | 30.0% | |
| !!! | GAACCATTCAAGAGATTTTT+TGG | - | chr7_3:18451297-18451316 | None:intergenic | 30.0% |
| AAAAATCTCTTGAATGGTTC+AGG | + | chr7_3:18451297-18451316 | Msa1095510:CDS | 30.0% | |
| !!! | GATCTATTTTGGAATGGAAA+TGG | + | chr7_3:18451330-18451349 | Msa1095510:CDS | 30.0% |
| !!! | TTTTGGAATGGAAATGGAAA+TGG | + | chr7_3:18451336-18451355 | Msa1095510:CDS | 30.0% |
| ! | ATTAGTTCACTTGCTAACTA+TGG | + | chr7_3:18451515-18451534 | Msa1095510:three_prime_UTR | 30.0% |
| TAACACACACATATAGCTAA+TGG | - | chr7_3:18451558-18451577 | None:intergenic | 30.0% | |
| TAAAAGAGAAAGCTTAGCCA+TGG | + | chr7_3:18449959-18449978 | Msa1095510:exon | 35.0% | |
| TGGATCTAGATAGATTGGAA+GGG | - | chr7_3:18449994-18450013 | None:intergenic | 35.0% | |
| !! | GTGTTTGTTGATTCACATCT+TGG | - | chr7_3:18450544-18450563 | None:intergenic | 35.0% |
| ! | GACGACAAGTTTTGCAAAAA+TGG | - | chr7_3:18450609-18450628 | None:intergenic | 35.0% |
| TCGTTATGATTAGGTTTCAG+AGG | - | chr7_3:18450730-18450749 | None:intergenic | 35.0% | |
| TGGAGATGATCGTTATGATT+AGG | - | chr7_3:18450739-18450758 | None:intergenic | 35.0% | |
| TAATCATAACGATCATCTCC+AGG | + | chr7_3:18450738-18450757 | Msa1095510:CDS | 35.0% | |
| GGAAATTGTGTTGGAAAATG+AGG | - | chr7_3:18450856-18450875 | None:intergenic | 35.0% | |
| CGATGTAAAGAGGTTACAAA+TGG | - | chr7_3:18450877-18450896 | None:intergenic | 35.0% | |
| ! | CGACAATAGTTATGTTTCTG+AGG | + | chr7_3:18450903-18450922 | Msa1095510:CDS | 35.0% |
| AGTGGTTCTTCAATTGGTAA+TGG | + | chr7_3:18450994-18451013 | Msa1095510:CDS | 35.0% | |
| !! | TCAATTGGTAATGGTAATGG+TGG | + | chr7_3:18451003-18451022 | Msa1095510:CDS | 35.0% |
| TTGTTGATACCAAATGGCAT+TGG | + | chr7_3:18451030-18451049 | Msa1095510:CDS | 35.0% | |
| TGATGAACTTGTAGCGAATT+CGG | - | chr7_3:18451072-18451091 | None:intergenic | 35.0% | |
| GGTTGCAAATTACTCAAGAA+AGG | - | chr7_3:18451114-18451133 | None:intergenic | 35.0% | |
| GTGGAAGAAAACAATCATCA+AGG | + | chr7_3:18451261-18451280 | Msa1095510:CDS | 35.0% | |
| AATGGAAATGGAAATGGAAG+TGG | + | chr7_3:18451342-18451361 | Msa1095510:CDS | 35.0% | |
| ! | GAAGTGGTAATGAAAATGCA+TGG | + | chr7_3:18451358-18451377 | Msa1095510:CDS | 35.0% |
| ! | ATCCTCAAATCTAGTGCTTT+TGG | + | chr7_3:18451415-18451434 | Msa1095510:exon | 35.0% |
| !! | AACCAAAAGCACTAGATTTG+AGG | - | chr7_3:18451420-18451439 | None:intergenic | 35.0% |
| CTAACACTCTAATTATACCC+TGG | - | chr7_3:18451491-18451510 | None:intergenic | 35.0% | |
| ! | CAGGGTATAATTAGAGTGTT+AGG | + | chr7_3:18451489-18451508 | Msa1095510:three_prime_UTR | 35.0% |
| AGCTATATGTGTGTGTTATG+AGG | + | chr7_3:18451560-18451579 | Msa1095510:three_prime_UTR | 35.0% | |
| GCTATATGTGTGTGTTATGA+GGG | + | chr7_3:18451561-18451580 | Msa1095510:three_prime_UTR | 35.0% | |
| TGTGTTATGAGGGAAGATAA+AGG | + | chr7_3:18451571-18451590 | Msa1095510:three_prime_UTR | 35.0% | |
| ! | CTGATTTTACCGCAATATCA+AGG | - | chr7_3:18451705-18451724 | None:intergenic | 35.0% |
| CTTGATATTGCGGTAAAATC+AGG | + | chr7_3:18451703-18451722 | Msa1095510:three_prime_UTR | 35.0% | |
| TAAAAGAGAAAGCTTAGCCA+TGG | + | chr7_3:18449959-18449978 | Msa1095510:exon | 35.0% | |
| TGGATCTAGATAGATTGGAA+GGG | - | chr7_3:18449994-18450013 | None:intergenic | 35.0% | |
| !! | GTGTTTGTTGATTCACATCT+TGG | - | chr7_3:18450544-18450563 | None:intergenic | 35.0% |
| ! | GACGACAAGTTTTGCAAAAA+TGG | - | chr7_3:18450609-18450628 | None:intergenic | 35.0% |
| TCGTTATGATTAGGTTTCAG+AGG | - | chr7_3:18450730-18450749 | None:intergenic | 35.0% | |
| TGGAGATGATCGTTATGATT+AGG | - | chr7_3:18450739-18450758 | None:intergenic | 35.0% | |
| TAATCATAACGATCATCTCC+AGG | + | chr7_3:18450738-18450757 | Msa1095510:CDS | 35.0% | |
| GGAAATTGTGTTGGAAAATG+AGG | - | chr7_3:18450856-18450875 | None:intergenic | 35.0% | |
| CGATGTAAAGAGGTTACAAA+TGG | - | chr7_3:18450877-18450896 | None:intergenic | 35.0% | |
| ! | CGACAATAGTTATGTTTCTG+AGG | + | chr7_3:18450903-18450922 | Msa1095510:CDS | 35.0% |
| AGTGGTTCTTCAATTGGTAA+TGG | + | chr7_3:18450994-18451013 | Msa1095510:CDS | 35.0% | |
| !! | TCAATTGGTAATGGTAATGG+TGG | + | chr7_3:18451003-18451022 | Msa1095510:CDS | 35.0% |
| TTGTTGATACCAAATGGCAT+TGG | + | chr7_3:18451030-18451049 | Msa1095510:CDS | 35.0% | |
| TGATGAACTTGTAGCGAATT+CGG | - | chr7_3:18451072-18451091 | None:intergenic | 35.0% | |
| GGTTGCAAATTACTCAAGAA+AGG | - | chr7_3:18451114-18451133 | None:intergenic | 35.0% | |
| GTGGAAGAAAACAATCATCA+AGG | + | chr7_3:18451261-18451280 | Msa1095510:CDS | 35.0% | |
| AATGGAAATGGAAATGGAAG+TGG | + | chr7_3:18451342-18451361 | Msa1095510:CDS | 35.0% | |
| ! | GAAGTGGTAATGAAAATGCA+TGG | + | chr7_3:18451358-18451377 | Msa1095510:CDS | 35.0% |
| ! | ATCCTCAAATCTAGTGCTTT+TGG | + | chr7_3:18451415-18451434 | Msa1095510:exon | 35.0% |
| !! | AACCAAAAGCACTAGATTTG+AGG | - | chr7_3:18451420-18451439 | None:intergenic | 35.0% |
| CTAACACTCTAATTATACCC+TGG | - | chr7_3:18451491-18451510 | None:intergenic | 35.0% | |
| ! | CAGGGTATAATTAGAGTGTT+AGG | + | chr7_3:18451489-18451508 | Msa1095510:three_prime_UTR | 35.0% |
| AGCTATATGTGTGTGTTATG+AGG | + | chr7_3:18451560-18451579 | Msa1095510:three_prime_UTR | 35.0% | |
| GCTATATGTGTGTGTTATGA+GGG | + | chr7_3:18451561-18451580 | Msa1095510:three_prime_UTR | 35.0% | |
| TGTGTTATGAGGGAAGATAA+AGG | + | chr7_3:18451571-18451590 | Msa1095510:three_prime_UTR | 35.0% | |
| ! | CTGATTTTACCGCAATATCA+AGG | - | chr7_3:18451705-18451724 | None:intergenic | 35.0% |
| CTTGATATTGCGGTAAAATC+AGG | + | chr7_3:18451703-18451722 | Msa1095510:three_prime_UTR | 35.0% | |
| TCTAGATAGATTGGAAGGGA+GGG | - | chr7_3:18449990-18450009 | None:intergenic | 40.0% | |
| ATCTAGATAGATTGGAAGGG+AGG | - | chr7_3:18449991-18450010 | None:intergenic | 40.0% | |
| GTGGATCTAGATAGATTGGA+AGG | - | chr7_3:18449995-18450014 | None:intergenic | 40.0% | |
| TTGGGTGGATCTAGATAGAT+TGG | - | chr7_3:18449999-18450018 | None:intergenic | 40.0% | |
| AATACCTGTTGTGTCCAGTT+GGG | - | chr7_3:18450017-18450036 | None:intergenic | 40.0% | |
| TAATACCTGTTGTGTCCAGT+TGG | - | chr7_3:18450018-18450037 | None:intergenic | 40.0% | |
| CAGCAAGTAGGAATTGGTAT+TGG | + | chr7_3:18450355-18450374 | Msa1095510:intron | 40.0% | |
| ! | CAAGTTTTGCAAAAATGGCG+TGG | - | chr7_3:18450604-18450623 | None:intergenic | 40.0% |
| GCAAAACTTGTCGTCGTTAT+TGG | + | chr7_3:18450614-18450633 | Msa1095510:CDS | 40.0% | |
| ! | AGTTATGTTTCTGAGGGCAT+TGG | + | chr7_3:18450910-18450929 | Msa1095510:CDS | 40.0% |
| GTTGAGTTTCAACTTGGTAG+TGG | + | chr7_3:18450976-18450995 | Msa1095510:CDS | 40.0% | |
| !! | CTTGGTAGTGGTTCTTCAAT+TGG | + | chr7_3:18450988-18451007 | Msa1095510:CDS | 40.0% |
| GGCTCTTTGTTGATACCAAA+TGG | + | chr7_3:18451024-18451043 | Msa1095510:CDS | 40.0% | |
| CATTGTTCACCAATGCCATT+TGG | - | chr7_3:18451042-18451061 | None:intergenic | 40.0% | |
| !! | CAAATGGCATTGGTGAACAA+TGG | + | chr7_3:18451040-18451059 | Msa1095510:CDS | 40.0% |
| TAGATTTGAGGATCACAAGG+TGG | - | chr7_3:18451408-18451427 | None:intergenic | 40.0% | |
| CACTAGATTTGAGGATCACA+AGG | - | chr7_3:18451411-18451430 | None:intergenic | 40.0% | |
| TCTAGATAGATTGGAAGGGA+GGG | - | chr7_3:18449990-18450009 | None:intergenic | 40.0% | |
| ATCTAGATAGATTGGAAGGG+AGG | - | chr7_3:18449991-18450010 | None:intergenic | 40.0% | |
| GTGGATCTAGATAGATTGGA+AGG | - | chr7_3:18449995-18450014 | None:intergenic | 40.0% | |
| TTGGGTGGATCTAGATAGAT+TGG | - | chr7_3:18449999-18450018 | None:intergenic | 40.0% | |
| AATACCTGTTGTGTCCAGTT+GGG | - | chr7_3:18450017-18450036 | None:intergenic | 40.0% | |
| TAATACCTGTTGTGTCCAGT+TGG | - | chr7_3:18450018-18450037 | None:intergenic | 40.0% | |
| CAGCAAGTAGGAATTGGTAT+TGG | + | chr7_3:18450355-18450374 | Msa1095510:intron | 40.0% | |
| ! | CAAGTTTTGCAAAAATGGCG+TGG | - | chr7_3:18450604-18450623 | None:intergenic | 40.0% |
| GCAAAACTTGTCGTCGTTAT+TGG | + | chr7_3:18450614-18450633 | Msa1095510:CDS | 40.0% | |
| ! | AGTTATGTTTCTGAGGGCAT+TGG | + | chr7_3:18450910-18450929 | Msa1095510:CDS | 40.0% |
| GTTGAGTTTCAACTTGGTAG+TGG | + | chr7_3:18450976-18450995 | Msa1095510:CDS | 40.0% | |
| !! | CTTGGTAGTGGTTCTTCAAT+TGG | + | chr7_3:18450988-18451007 | Msa1095510:CDS | 40.0% |
| GGCTCTTTGTTGATACCAAA+TGG | + | chr7_3:18451024-18451043 | Msa1095510:CDS | 40.0% | |
| CATTGTTCACCAATGCCATT+TGG | - | chr7_3:18451042-18451061 | None:intergenic | 40.0% | |
| !! | CAAATGGCATTGGTGAACAA+TGG | + | chr7_3:18451040-18451059 | Msa1095510:CDS | 40.0% |
| TAGATTTGAGGATCACAAGG+TGG | - | chr7_3:18451408-18451427 | None:intergenic | 40.0% | |
| CACTAGATTTGAGGATCACA+AGG | - | chr7_3:18451411-18451430 | None:intergenic | 40.0% | |
| GGATATGTGAGTGTGTGTGT+GGG | - | chr7_3:18449917-18449936 | None:intergenic | 45.0% | |
| TGGATATGTGAGTGTGTGTG+TGG | - | chr7_3:18449918-18449937 | None:intergenic | 45.0% | |
| CTAGATAGATTGGAAGGGAG+GGG | - | chr7_3:18449989-18450008 | None:intergenic | 45.0% | |
| TCTATCTAGATCCACCCAAC+TGG | + | chr7_3:18450000-18450019 | Msa1095510:CDS | 45.0% | |
| GACATCGTTGAAGCTGATAG+CGG | - | chr7_3:18450406-18450425 | None:intergenic | 45.0% | |
| TCTGTCACTGTTGAAGCTGA+TGG | + | chr7_3:18450424-18450443 | Msa1095510:CDS | 45.0% | |
| !! | ATACTGGTCTTCTAGACCCT+TGG | - | chr7_3:18450456-18450475 | None:intergenic | 45.0% |
| GCTCGATCGATCATTGATAC+TGG | - | chr7_3:18450472-18450491 | None:intergenic | 45.0% | |
| ! | TGTCGTCGTTATTGGACTAG+AGG | + | chr7_3:18450622-18450641 | Msa1095510:CDS | 45.0% |
| CATAACGATCATCTCCAGGT+CGG | + | chr7_3:18450742-18450761 | Msa1095510:CDS | 45.0% | |
| ! | GTCGCTTTGACGATGTAAAG+AGG | - | chr7_3:18450887-18450906 | None:intergenic | 45.0% |
| !! | TGAGGGCATTGGTTCTTTGT+TGG | + | chr7_3:18450921-18450940 | Msa1095510:CDS | 45.0% |
| !! | ATGGCATTGGTGAACAATGG+AGG | + | chr7_3:18451043-18451062 | Msa1095510:CDS | 45.0% |
| CAAGGTGGTGAAGTGAAACT+AGG | - | chr7_3:18451393-18451412 | None:intergenic | 45.0% | |
| CACTGCGAACCTTGATATTG+CGG | + | chr7_3:18451693-18451712 | Msa1095510:three_prime_UTR | 45.0% | |
| GGATATGTGAGTGTGTGTGT+GGG | - | chr7_3:18449917-18449936 | None:intergenic | 45.0% | |
| TGGATATGTGAGTGTGTGTG+TGG | - | chr7_3:18449918-18449937 | None:intergenic | 45.0% | |
| CTAGATAGATTGGAAGGGAG+GGG | - | chr7_3:18449989-18450008 | None:intergenic | 45.0% | |
| TCTATCTAGATCCACCCAAC+TGG | + | chr7_3:18450000-18450019 | Msa1095510:CDS | 45.0% | |
| GACATCGTTGAAGCTGATAG+CGG | - | chr7_3:18450406-18450425 | None:intergenic | 45.0% | |
| TCTGTCACTGTTGAAGCTGA+TGG | + | chr7_3:18450424-18450443 | Msa1095510:CDS | 45.0% | |
| !! | ATACTGGTCTTCTAGACCCT+TGG | - | chr7_3:18450456-18450475 | None:intergenic | 45.0% |
| GCTCGATCGATCATTGATAC+TGG | - | chr7_3:18450472-18450491 | None:intergenic | 45.0% | |
| ! | TGTCGTCGTTATTGGACTAG+AGG | + | chr7_3:18450622-18450641 | Msa1095510:CDS | 45.0% |
| CATAACGATCATCTCCAGGT+CGG | + | chr7_3:18450742-18450761 | Msa1095510:CDS | 45.0% | |
| ! | GTCGCTTTGACGATGTAAAG+AGG | - | chr7_3:18450887-18450906 | None:intergenic | 45.0% |
| !! | TGAGGGCATTGGTTCTTTGT+TGG | + | chr7_3:18450921-18450940 | Msa1095510:CDS | 45.0% |
| !! | ATGGCATTGGTGAACAATGG+AGG | + | chr7_3:18451043-18451062 | Msa1095510:CDS | 45.0% |
| CAAGGTGGTGAAGTGAAACT+AGG | - | chr7_3:18451393-18451412 | None:intergenic | 45.0% | |
| CACTGCGAACCTTGATATTG+CGG | + | chr7_3:18451693-18451712 | Msa1095510:three_prime_UTR | 45.0% | |
| TATGTGAGTGTGTGTGTGGG+TGG | - | chr7_3:18449914-18449933 | None:intergenic | 50.0% | |
| ! | GATAGCGGTTGCATAGCTGA+TGG | - | chr7_3:18450391-18450410 | None:intergenic | 50.0% |
| AAGCTGATGGCAGCTACCAA+GGG | + | chr7_3:18450437-18450456 | Msa1095510:CDS | 50.0% | |
| ! | CGTCGTTATTGGACTAGAGG+TGG | + | chr7_3:18450625-18450644 | Msa1095510:CDS | 50.0% |
| GCACTTCGAAACGTTCCTGT+TGG | + | chr7_3:18450649-18450668 | Msa1095510:CDS | 50.0% | |
| CTTCGAAACGTTCCTGTTGG+AGG | + | chr7_3:18450652-18450671 | Msa1095510:CDS | 50.0% | |
| CTTCTACAACCACCTCCAAC+AGG | - | chr7_3:18450667-18450686 | None:intergenic | 50.0% | |
| CTGTTGGAGGTGGTTGTAGA+AGG | + | chr7_3:18450665-18450684 | Msa1095510:CDS | 50.0% | |
| !! | TGGTGGTTCTAGCTCAGCAA+GGG | + | chr7_3:18450777-18450796 | Msa1095510:CDS | 50.0% |
| TATGTGAGTGTGTGTGTGGG+TGG | - | chr7_3:18449914-18449933 | None:intergenic | 50.0% | |
| ! | GATAGCGGTTGCATAGCTGA+TGG | - | chr7_3:18450391-18450410 | None:intergenic | 50.0% |
| AAGCTGATGGCAGCTACCAA+GGG | + | chr7_3:18450437-18450456 | Msa1095510:CDS | 50.0% | |
| ! | CGTCGTTATTGGACTAGAGG+TGG | + | chr7_3:18450625-18450644 | Msa1095510:CDS | 50.0% |
| GCACTTCGAAACGTTCCTGT+TGG | + | chr7_3:18450649-18450668 | Msa1095510:CDS | 50.0% | |
| CTTCGAAACGTTCCTGTTGG+AGG | + | chr7_3:18450652-18450671 | Msa1095510:CDS | 50.0% | |
| CTTCTACAACCACCTCCAAC+AGG | - | chr7_3:18450667-18450686 | None:intergenic | 50.0% | |
| CTGTTGGAGGTGGTTGTAGA+AGG | + | chr7_3:18450665-18450684 | Msa1095510:CDS | 50.0% | |
| !! | TGGTGGTTCTAGCTCAGCAA+GGG | + | chr7_3:18450777-18450796 | Msa1095510:CDS | 50.0% |
| TCCACCCAACTGGACACAAC+AGG | + | chr7_3:18450010-18450029 | Msa1095510:CDS | 55.0% | |
| ACCTGTTGTGTCCAGTTGGG+TGG | - | chr7_3:18450014-18450033 | None:intergenic | 55.0% | |
| GAAGCTGATGGCAGCTACCA+AGG | + | chr7_3:18450436-18450455 | Msa1095510:CDS | 55.0% | |
| ! | GTGCTGCTGCAGCATCATTC+TGG | - | chr7_3:18450513-18450532 | None:intergenic | 55.0% |
| CGAAACGTTCCTGTTGGAGG+TGG | + | chr7_3:18450655-18450674 | Msa1095510:CDS | 55.0% | |
| !! | CTGGTGGTTCTAGCTCAGCA+AGG | + | chr7_3:18450776-18450795 | Msa1095510:CDS | 55.0% |
| TCCACCCAACTGGACACAAC+AGG | + | chr7_3:18450010-18450029 | Msa1095510:CDS | 55.0% | |
| ACCTGTTGTGTCCAGTTGGG+TGG | - | chr7_3:18450014-18450033 | None:intergenic | 55.0% | |
| GAAGCTGATGGCAGCTACCA+AGG | + | chr7_3:18450436-18450455 | Msa1095510:CDS | 55.0% | |
| ! | GTGCTGCTGCAGCATCATTC+TGG | - | chr7_3:18450513-18450532 | None:intergenic | 55.0% |
| CGAAACGTTCCTGTTGGAGG+TGG | + | chr7_3:18450655-18450674 | Msa1095510:CDS | 55.0% | |
| !! | CTGGTGGTTCTAGCTCAGCA+AGG | + | chr7_3:18450776-18450795 | Msa1095510:CDS | 55.0% |
| TGGAAGGGAGGGGAAGACCA+TGG | - | chr7_3:18449979-18449998 | None:intergenic | 60.0% | |
| GATCATCTCCAGGTCGGTGC+CGG | + | chr7_3:18450748-18450767 | Msa1095510:CDS | 60.0% | |
| GCTAGAACCACCAGCAGCAC+CGG | - | chr7_3:18450770-18450789 | None:intergenic | 60.0% | |
| TGGAAGGGAGGGGAAGACCA+TGG | - | chr7_3:18449979-18449998 | None:intergenic | 60.0% | |
| GATCATCTCCAGGTCGGTGC+CGG | + | chr7_3:18450748-18450767 | Msa1095510:CDS | 60.0% | |
| GCTAGAACCACCAGCAGCAC+CGG | - | chr7_3:18450770-18450789 | None:intergenic | 60.0% | |
| !! | CAGCAGCACCGGCACCGACC+TGG | - | chr7_3:18450759-18450778 | None:intergenic | 75.0% |
| !! | CAGGTCGGTGCCGGTGCTGC+TGG | + | chr7_3:18450757-18450776 | Msa1095510:CDS | 75.0% |
| !! | GTCGGTGCCGGTGCTGCTGG+TGG | + | chr7_3:18450760-18450779 | Msa1095510:CDS | 75.0% |
| !! | CAGCAGCACCGGCACCGACC+TGG | - | chr7_3:18450759-18450778 | None:intergenic | 75.0% |
| !! | CAGGTCGGTGCCGGTGCTGC+TGG | + | chr7_3:18450757-18450776 | Msa1095510:CDS | 75.0% |
| !! | GTCGGTGCCGGTGCTGCTGG+TGG | + | chr7_3:18450760-18450779 | Msa1095510:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 18449844 | 18451731 | 18449844 | ID=Msa1095510;Name=Msa1095510 |
| chr7_3 | mRNA | 18449844 | 18451731 | 18449844 | ID=Msa1095510-mRNA-1;Parent=Msa1095510;Name=Msa1095510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=134|1|1|1|0|0|2|303|374 |
| chr7_3 | exon | 18449844 | 18450031 | 18449844 | ID=Msa1095510-mRNA-1:exon:3992;Parent=Msa1095510-mRNA-1 |
| chr7_3 | exon | 18450358 | 18451731 | 18450358 | ID=Msa1095510-mRNA-1:exon:3993;Parent=Msa1095510-mRNA-1 |
| chr7_3 | five_prime_UTR | 18449844 | 18449977 | 18449844 | ID=Msa1095510-mRNA-1:five_prime_utr;Parent=Msa1095510-mRNA-1 |
| chr7_3 | CDS | 18449978 | 18450031 | 18449978 | ID=Msa1095510-mRNA-1:cds;Parent=Msa1095510-mRNA-1 |
| chr7_3 | CDS | 18450358 | 18451428 | 18450358 | ID=Msa1095510-mRNA-1:cds;Parent=Msa1095510-mRNA-1 |
| chr7_3 | three_prime_UTR | 18451429 | 18451731 | 18451429 | ID=Msa1095510-mRNA-1:three_prime_utr;Parent=Msa1095510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
