Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1300590 | XP_024637937.1 | 97.626 | 674 | 16 | 0 | 1 | 674 | 1 | 674 | 0.0 | 1371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1300590 | sp|Q43077|AMO_PEA | 87.259 | 675 | 85 | 1 | 1 | 675 | 1 | 674 | 0.0 | 1254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1300590 | A0A072URB1 | 97.626 | 674 | 16 | 0 | 1 | 674 | 1 | 674 | 0.0 | 1371 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa1300590 | 0.803627 | 3.184715e-49 | -8.615850e-47 |
| Msa0120450 | Msa1300590 | 0.804491 | 2.105622e-49 | -8.615850e-47 |
| Msa0605480 | Msa1300590 | 0.813989 | 1.936111e-51 | -8.615850e-47 |
| Msa0646430 | Msa1300590 | 0.804426 | 2.172940e-49 | -8.615850e-47 |
| Msa0646440 | Msa1300590 | 0.806296 | 8.812370e-50 | -8.615850e-47 |
| Msa0667600 | Msa1300590 | 0.816653 | 4.950129e-52 | -8.615850e-47 |
| Msa0692090 | Msa1300590 | 0.807321 | 5.351956e-50 | -8.615850e-47 |
| Msa0694790 | Msa1300590 | 0.801352 | 9.377512e-49 | -8.615850e-47 |
| Msa0798840 | Msa1300590 | 0.806961 | 6.379676e-50 | -8.615850e-47 |
| Msa0140270 | Msa1300590 | 0.808181 | 3.513268e-50 | -8.615850e-47 |
| Msa0203880 | Msa1300590 | 0.811371 | 7.239126e-51 | -8.615850e-47 |
| Msa0209060 | Msa1300590 | 0.802749 | 4.839389e-49 | -8.615850e-47 |
| Msa0218060 | Msa1300590 | 0.803913 | 2.777470e-49 | -8.615850e-47 |
| Msa1233620 | Msa1300590 | 0.814260 | 1.686969e-51 | -8.615850e-47 |
| Msa1250660 | Msa1300590 | 0.828904 | 6.935842e-55 | -8.615850e-47 |
| Msa1257200 | Msa1300590 | 0.804033 | 2.623484e-49 | -8.615850e-47 |
| Msa1275840 | Msa1300590 | 0.807188 | 5.711572e-50 | -8.615850e-47 |
| Msa1283980 | Msa1300590 | 0.824620 | 7.314941e-54 | -8.615850e-47 |
| Msa1284020 | Msa1300590 | 0.819002 | 1.459707e-52 | -8.615850e-47 |
| Msa1300590 | Msa1314020 | 0.807672 | 4.508944e-50 | -8.615850e-47 |
| Msa1300590 | Msa1314050 | 0.803716 | 3.053045e-49 | -8.615850e-47 |
| Msa1300590 | Msa1322980 | 0.845858 | 3.124985e-59 | -8.615850e-47 |
| Msa1300590 | Msa1323080 | 0.822868 | 1.881857e-53 | -8.615850e-47 |
| Msa1300590 | Msa1334670 | 0.800797 | 1.217623e-48 | -8.615850e-47 |
| Msa1300590 | Msa1380740 | 0.800953 | 1.131670e-48 | -8.615850e-47 |
| Msa1300590 | Msa1407810 | 0.813075 | 3.074982e-51 | -8.615850e-47 |
| Msa1300590 | Msa1409600 | 0.825214 | 5.296862e-54 | -8.615850e-47 |
| Msa1300590 | Msa1437780 | 0.810804 | 9.607046e-51 | -8.615850e-47 |
| Msa1300590 | Msa1455360 | 0.802484 | 5.489718e-49 | -8.615850e-47 |
| Msa0380680 | Msa1300590 | 0.803392 | 3.563837e-49 | -8.615850e-47 |
| Msa0987640 | Msa1300590 | 0.820690 | 6.002377e-53 | -8.615850e-47 |
| Msa0996980 | Msa1300590 | 0.806985 | 6.305427e-50 | -8.615850e-47 |
| Msa1029820 | Msa1300590 | 0.805963 | 1.035468e-49 | -8.615850e-47 |
| Msa1068940 | Msa1300590 | 0.808694 | 2.730126e-50 | -8.615850e-47 |
| Msa0247050 | Msa1300590 | 0.841975 | 3.428235e-58 | -8.615850e-47 |
| Msa0258010 | Msa1300590 | 0.816683 | 4.873719e-52 | -8.615850e-47 |
| Msa0285420 | Msa1300590 | 0.815661 | 8.244596e-52 | -8.615850e-47 |
| Msa0287630 | Msa1300590 | 0.801145 | 1.033580e-48 | -8.615850e-47 |
| Msa0288540 | Msa1300590 | 0.801531 | 8.619265e-49 | -8.615850e-47 |
| Msa0324220 | Msa1300590 | 0.814363 | 1.600421e-51 | -8.615850e-47 |
| Msa0326770 | Msa1300590 | 0.820625 | 6.213182e-53 | -8.615850e-47 |
| Msa0335340 | Msa1300590 | 0.808325 | 3.273804e-50 | -8.615850e-47 |
| Msa0349930 | Msa1300590 | 0.815523 | 8.852177e-52 | -8.615850e-47 |
| Msa1160540 | Msa1300590 | 0.806498 | 7.989780e-50 | -8.615850e-47 |
| Msa1165460 | Msa1300590 | 0.803079 | 4.136760e-49 | -8.615850e-47 |
| Msa1179190 | Msa1300590 | 0.812034 | 5.194723e-51 | -8.615850e-47 |
| Msa1206920 | Msa1300590 | 0.800955 | 1.130390e-48 | -8.615850e-47 |
| Msa1217890 | Msa1300590 | 0.802066 | 6.692576e-49 | -8.615850e-47 |
| Msa0531030 | Msa1300590 | 0.817470 | 3.242585e-52 | -8.615850e-47 |
| Msa0532660 | Msa1300590 | 0.808225 | 3.438288e-50 | -8.615850e-47 |
| Msa0556720 | Msa1300590 | 0.818679 | 1.728702e-52 | -8.615850e-47 |
| Msa0567330 | Msa1300590 | 0.812501 | 4.107683e-51 | -8.615850e-47 |
| Msa0567570 | Msa1300590 | 0.804117 | 2.519796e-49 | -8.615850e-47 |
| Msa0576320 | Msa1300590 | 0.816116 | 6.525839e-52 | -8.615850e-47 |
| Msa0589460 | Msa1300590 | 0.801790 | 7.623941e-49 | -8.615850e-47 |
| Msa0880910 | Msa1300590 | 0.800959 | 1.128332e-48 | -8.615850e-47 |
| Msa0896920 | Msa1300590 | 0.817958 | 2.516745e-52 | -8.615850e-47 |
| Msa0896950 | Msa1300590 | 0.816489 | 5.387753e-52 | -8.615850e-47 |
| Msa0913550 | Msa1300590 | 0.813049 | 3.116399e-51 | -8.615850e-47 |
| Msa0946010 | Msa1300590 | 0.801724 | 7.867613e-49 | -8.615850e-47 |
| Msa0946310 | Msa1300590 | 0.823230 | 1.549016e-53 | -8.615850e-47 |
| Msa0951150 | Msa1300590 | 0.833435 | 5.343550e-56 | -8.615850e-47 |
| Msa0959220 | Msa1300590 | 0.809856 | 1.538497e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1300590 | MtrunA17_Chr4g0065981 | 97.626 | 674 | 16 | 0 | 1 | 674 | 1 | 674 | 0.0 | 1371 |
| Msa1300590 | MtrunA17_Chr4g0065961 | 85.224 | 670 | 96 | 2 | 7 | 675 | 1 | 668 | 0.0 | 1199 |
| Msa1300590 | MtrunA17_Chr4g0065991 | 86.957 | 506 | 66 | 0 | 168 | 673 | 1 | 506 | 0.0 | 948 |
| Msa1300590 | MtrunA17_Chr1g0205571 | 57.143 | 672 | 284 | 2 | 7 | 674 | 1 | 672 | 0.0 | 821 |
| Msa1300590 | MtrunA17_Chr4g0023331 | 90.709 | 409 | 38 | 0 | 265 | 673 | 5 | 413 | 0.0 | 786 |
| Msa1300590 | MtrunA17_Chr1g0205541 | 47.741 | 664 | 325 | 6 | 4 | 660 | 10 | 658 | 0.0 | 660 |
| Msa1300590 | MtrunA17_Chr3g0119641 | 46.106 | 642 | 329 | 11 | 32 | 661 | 77 | 713 | 0.0 | 593 |
| Msa1300590 | MtrunA17_Chr4g0023321 | 74.242 | 264 | 66 | 2 | 1 | 264 | 1 | 262 | 9.17e-142 | 414 |
| Msa1300590 | MtrunA17_Chr3g0117081 | 26.599 | 688 | 445 | 18 | 21 | 660 | 61 | 736 | 2.81e-76 | 259 |
| Msa1300590 | MtrunA17_Chr5g0412801 | 26.883 | 677 | 434 | 19 | 33 | 660 | 44 | 708 | 6.14e-72 | 247 |
| Msa1300590 | MtrunA17_Chr8g0368011 | 26.908 | 498 | 297 | 18 | 33 | 481 | 82 | 561 | 9.01e-44 | 167 |
| Msa1300590 | MtrunA17_Chr8g0368021 | 38.583 | 127 | 76 | 2 | 544 | 668 | 37 | 163 | 1.39e-21 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1300590 | AT1G31690.1 | 52.074 | 651 | 299 | 6 | 33 | 674 | 27 | 673 | 0.0 | 716 |
| Msa1300590 | AT1G31710.1 | 52.566 | 643 | 289 | 7 | 32 | 662 | 27 | 665 | 0.0 | 713 |
| Msa1300590 | AT1G31670.1 | 50.226 | 665 | 303 | 10 | 20 | 674 | 91 | 737 | 0.0 | 668 |
| Msa1300590 | AT4G14940.1 | 46.412 | 655 | 335 | 6 | 13 | 660 | 4 | 649 | 0.0 | 636 |
| Msa1300590 | AT4G12290.1 | 44.260 | 662 | 341 | 12 | 32 | 673 | 81 | 734 | 0.0 | 585 |
| Msa1300590 | AT1G62810.1 | 44.240 | 651 | 351 | 9 | 32 | 673 | 59 | 706 | 0.0 | 577 |
| Msa1300590 | AT3G43670.1 | 44.828 | 638 | 340 | 9 | 32 | 660 | 40 | 674 | 0.0 | 571 |
| Msa1300590 | AT4G12290.2 | 42.905 | 599 | 314 | 12 | 32 | 610 | 81 | 671 | 1.18e-170 | 504 |
| Msa1300590 | AT4G12280.1 | 49.310 | 290 | 139 | 2 | 393 | 674 | 5 | 294 | 2.83e-98 | 304 |
| Msa1300590 | AT4G12270.1 | 38.442 | 385 | 204 | 11 | 32 | 390 | 83 | 460 | 2.09e-83 | 271 |
| Msa1300590 | AT2G42490.1 | 26.638 | 687 | 441 | 21 | 24 | 660 | 70 | 743 | 9.94e-69 | 239 |
Find 142 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAGACTTTCTTTGATTC+TGG | 0.192113 | 8_3:-62191446 | Msa1300590:CDS |
| AGATACTCTTGTTTGGTTAA+AGG | 0.225213 | 8_3:+62192907 | None:intergenic |
| TTCTTTGATTCTGGAGAGTT+TGG | 0.228823 | 8_3:-62191437 | Msa1300590:CDS |
| AGAAGATCTACATGGTAAAT+TGG | 0.228868 | 8_3:-62189839 | Msa1300590:CDS |
| ATGAGATACTAATAGATTTA+AGG | 0.230936 | 8_3:-62192705 | Msa1300590:CDS |
| TGGATTCCTCTCAAAGAAAT+TGG | 0.239294 | 8_3:+62189149 | None:intergenic |
| GATACTCTTGTTTGGTTAAA+GGG | 0.251643 | 8_3:+62192908 | None:intergenic |
| GGGATATTTGTTATGGACTA+TGG | 0.256011 | 8_3:+62192873 | None:intergenic |
| CATTTACTAATTATAATGTT+TGG | 0.263224 | 8_3:-62189477 | Msa1300590:CDS |
| GTGCTCAATAGTGGCATTAT+AGG | 0.281166 | 8_3:+62189192 | None:intergenic |
| CTAGCAAGACTATTCTGTTT+TGG | 0.288627 | 8_3:+62192292 | None:intergenic |
| ATTTGTGTGTTTGAACAATA+TGG | 0.304862 | 8_3:-62191299 | Msa1300590:CDS |
| GATTCTGGAGAGTTTGGATT+TGG | 0.307599 | 8_3:-62191431 | Msa1300590:CDS |
| ATTTATGTGAGGCCTATTAC+TGG | 0.312071 | 8_3:-62192439 | Msa1300590:CDS |
| GATAGCACTGTCGGGTATAT+TGG | 0.316058 | 8_3:-62189902 | Msa1300590:CDS |
| AGATCAATGGTCACAGTGTT+AGG | 0.319446 | 8_3:-62192243 | Msa1300590:intron |
| ATAAAAGGAGGATATTTCTT+TGG | 0.322288 | 8_3:+62192595 | None:intergenic |
| TTGAGGTGGGATATTTGTTA+TGG | 0.322352 | 8_3:+62192866 | None:intergenic |
| CACAAATTGCATTCTTCAAT+AGG | 0.324524 | 8_3:+62191315 | None:intergenic |
| AAAACTCTTACGAATTCATT+AGG | 0.331837 | 8_3:+62191242 | None:intergenic |
| GGTTTGTTCTAGTTTCACTA+TGG | 0.352508 | 8_3:-62192533 | Msa1300590:CDS |
| GTTCAAAGAGAAAGAGTTAC+TGG | 0.352872 | 8_3:-62189690 | Msa1300590:CDS |
| AGTTTCACTATGGGATGGTT+TGG | 0.355295 | 8_3:-62192523 | Msa1300590:CDS |
| CTGCTGAGAACACTGATTAC+AGG | 0.355435 | 8_3:-62192342 | Msa1300590:CDS |
| AGTGGATGAGCTGGAATTGC+TGG | 0.355513 | 8_3:+62189535 | None:intergenic |
| ATTTGTTATGGACTATGGTT+TGG | 0.358342 | 8_3:+62192878 | None:intergenic |
| ATTTACTAATTATAATGTTT+GGG | 0.363115 | 8_3:-62189476 | Msa1300590:CDS |
| ATGTGGCGTCACACTGAAAC+TGG | 0.375537 | 8_3:-62191269 | Msa1300590:CDS |
| TTGACAATTGCAAGTTCGCC+TGG | 0.394225 | 8_3:+62189607 | None:intergenic |
| ACCATGGTGATTCCAGTAAT+AGG | 0.398820 | 8_3:+62192427 | None:intergenic |
| TCTTCAGTTGGGTCTTGATA+AGG | 0.402994 | 8_3:+62191476 | None:intergenic |
| CCAGGCCATGCAACATCTCT+TGG | 0.403230 | 8_3:+62189108 | None:intergenic |
| GACAGTTAGATACTCTTGTT+TGG | 0.407189 | 8_3:+62192900 | None:intergenic |
| CAAGATAGTACATGTAGAAA+TGG | 0.407399 | 8_3:+62189785 | None:intergenic |
| GTAGTATCATTCCACTATAT+TGG | 0.413257 | 8_3:-62192838 | Msa1300590:CDS |
| TCAAAACAAAGCCCACCATT+TGG | 0.413926 | 8_3:-62192316 | Msa1300590:CDS |
| CTATTAGTATCTCATGGCTT+TGG | 0.418126 | 8_3:+62192713 | None:intergenic |
| GAGAAGACACATTAGCTGTT+TGG | 0.422613 | 8_3:-62189393 | Msa1300590:CDS |
| ATTGATGATAGCAATGATAA+AGG | 0.423843 | 8_3:+62192738 | None:intergenic |
| CGAGGGATTGTTATAACACT+TGG | 0.427479 | 8_3:+62192766 | None:intergenic |
| TGCTCAATAGTGGCATTATA+GGG | 0.429687 | 8_3:+62189193 | None:intergenic |
| TAAAGTAAAATTCTTCAGTT+GGG | 0.435063 | 8_3:+62191465 | None:intergenic |
| CCAAGAGATGTTGCATGGCC+TGG | 0.439050 | 8_3:-62189108 | Msa1300590:CDS |
| GTCGGGTATATTGGAAATCA+AGG | 0.439975 | 8_3:-62189893 | Msa1300590:CDS |
| TTTATCATTGCTATCATCAA+TGG | 0.443953 | 8_3:-62192736 | Msa1300590:CDS |
| TTAAAGTAAAATTCTTCAGT+TGG | 0.453876 | 8_3:+62191464 | None:intergenic |
| ATAGGGAAATCTTCTTGTGC+TGG | 0.453905 | 8_3:+62189210 | None:intergenic |
| TGAGCACTTCATTTGAGCTC+AGG | 0.454008 | 8_3:-62189176 | Msa1300590:CDS |
| GTAAATGCACCGCGTATTTG+TGG | 0.461547 | 8_3:+62189493 | None:intergenic |
| ATTGCATTCTTCAATAGGCT+TGG | 0.465210 | 8_3:+62191320 | None:intergenic |
| AGAGAAAAGAGCAAGTTTCA+TGG | 0.465842 | 8_3:+62192999 | None:intergenic |
| AAAAGATGCTATTCTCAAAT+GGG | 0.468868 | 8_3:-62192800 | Msa1300590:CDS |
| GACAATGTTTACAAAGGGAA+TGG | 0.472431 | 8_3:-62192664 | Msa1300590:CDS |
| GTTTGTTCTAGTTTCACTAT+GGG | 0.475203 | 8_3:-62192532 | Msa1300590:CDS |
| GAATGATACTACGTTCTTTG+AGG | 0.478924 | 8_3:+62192849 | None:intergenic |
| TCAGATGCTAAAATTACTCT+AGG | 0.479893 | 8_3:-62189637 | Msa1300590:CDS |
| TGTGGTGGACAATCACGATT+AGG | 0.480464 | 8_3:+62191386 | None:intergenic |
| TATTTGTGGGTAATCATCTT+CGG | 0.488384 | 8_3:+62189507 | None:intergenic |
| CTTTGGAAGTTCTATTGCAA+TGG | 0.490957 | 8_3:+62192612 | None:intergenic |
| TCTCTTTGAACTTCCATCAG+TGG | 0.498252 | 8_3:+62189702 | None:intergenic |
| AAGAGCAAGTTTCATGGTGG+TGG | 0.500374 | 8_3:+62193005 | None:intergenic |
| TCAAATGAAGTGCTCAATAG+TGG | 0.503411 | 8_3:+62189183 | None:intergenic |
| TAAATGCACCGCGTATTTGT+GGG | 0.503813 | 8_3:+62189494 | None:intergenic |
| GTTCTAGTTTCACTATGGGA+TGG | 0.505610 | 8_3:-62192528 | Msa1300590:CDS |
| TGTGTACAATTTATTTGCAT+TGG | 0.506079 | 8_3:-62189062 | None:intergenic |
| CTCTCTGACAATGTTTACAA+AGG | 0.506978 | 8_3:-62192670 | Msa1300590:CDS |
| TGCAATGGCTTGTTCATCAA+CGG | 0.510388 | 8_3:+62192627 | None:intergenic |
| TCTCTGACAATGTTTACAAA+GGG | 0.510485 | 8_3:-62192669 | Msa1300590:CDS |
| TTCCTCTCAAAGAAATTGGT+TGG | 0.512413 | 8_3:+62189153 | None:intergenic |
| TCGGTTAAAAGTGGATGAGC+TGG | 0.514297 | 8_3:+62189526 | None:intergenic |
| GGTCCTGGCTTTCAGATCAA+TGG | 0.514472 | 8_3:-62192256 | Msa1300590:CDS |
| GGCCAACCAATTTCTTTGAG+AGG | 0.515922 | 8_3:-62189155 | Msa1300590:CDS |
| GCCAACTGGAAGTTTCATAT+AGG | 0.519189 | 8_3:-62191608 | Msa1300590:CDS |
| TTGGTTTCAGCAAACAGCAT+TGG | 0.519974 | 8_3:-62189820 | Msa1300590:CDS |
| GGTCATCTAGACCAATATAG+TGG | 0.521997 | 8_3:+62192827 | None:intergenic |
| TGACAATTGCAAGTTCGCCT+GGG | 0.523851 | 8_3:+62189608 | None:intergenic |
| TAATCATCTTCGGTTAAAAG+TGG | 0.524051 | 8_3:+62189517 | None:intergenic |
| AGTCATCAACCTCAAGGTCC+TGG | 0.524906 | 8_3:-62192271 | Msa1300590:CDS |
| GCTATAGCTGCACTATGTCT+TGG | 0.527164 | 8_3:+62193049 | None:intergenic |
| TGATACTACGTTCTTTGAGG+TGG | 0.527568 | 8_3:+62192852 | None:intergenic |
| GTTCATCAACGGTTAGTGTA+GGG | 0.530380 | 8_3:+62192638 | None:intergenic |
| TTAAATCTATTAGTATCTCA+TGG | 0.531287 | 8_3:+62192707 | None:intergenic |
| TGTTCATCAACGGTTAGTGT+AGG | 0.531340 | 8_3:+62192637 | None:intergenic |
| AGGTTTGAATCTCTCTGAAG+TGG | 0.536529 | 8_3:-62192554 | Msa1300590:CDS |
| ATTGTGATGTGGCATGTAGT+TGG | 0.538927 | 8_3:-62189246 | Msa1300590:CDS |
| GATACTACGTTCTTTGAGGT+GGG | 0.539890 | 8_3:+62192853 | None:intergenic |
| CTGCTTCAACATCTCTATCA+TGG | 0.540780 | 8_3:+62192371 | None:intergenic |
| CTGGAATTGCTGGAATCAAA+CGG | 0.547335 | 8_3:+62189545 | None:intergenic |
| ACATACATTCACTCGGCTGA+TGG | 0.552985 | 8_3:-62191347 | Msa1300590:CDS |
| GTTTGGTTAAAGGGTCAAGT+GGG | 0.557487 | 8_3:+62192917 | None:intergenic |
| TGTTTGGTTAAAGGGTCAAG+TGG | 0.559486 | 8_3:+62192916 | None:intergenic |
| GTTTGGATTTGGTCTGTCAA+CGG | 0.560357 | 8_3:-62191420 | Msa1300590:CDS |
| TGACCATTGATCTGAAAGCC+AGG | 0.561232 | 8_3:+62192253 | None:intergenic |
| TGCTGAGAACACTGATTACA+GGG | 0.565785 | 8_3:-62192341 | Msa1300590:CDS |
| ATCTGAAAGCCAGGACCTTG+AGG | 0.566123 | 8_3:+62192262 | None:intergenic |
| AGAGAACTGATTGGAATGAG+AGG | 0.567695 | 8_3:+62192965 | None:intergenic |
| GATTGGGAGTTCAAAGCAAG+TGG | 0.571224 | 8_3:-62191052 | Msa1300590:CDS |
| CATTGATACATACATTCACT+CGG | 0.571742 | 8_3:-62191354 | Msa1300590:CDS |
| TGCACTGATGCAATAAAAGG+AGG | 0.581292 | 8_3:+62192583 | None:intergenic |
| AACAATATGGTAATATCATG+TGG | 0.585096 | 8_3:-62191286 | Msa1300590:CDS |
| TCTTACAATCAAATTCACTT+CGG | 0.586179 | 8_3:+62191111 | None:intergenic |
| ATAGGATTTGATGTACGAGC+TGG | 0.588121 | 8_3:-62191590 | Msa1300590:CDS |
| ACTTCCATCAGTGGTTCTCA+CGG | 0.589586 | 8_3:+62189711 | None:intergenic |
| GTGTAACAGAGAGAACTGAT+TGG | 0.595481 | 8_3:+62192956 | None:intergenic |
| ATGTACACAGATAGCACTGT+CGG | 0.599668 | 8_3:-62189911 | Msa1300590:intron |
| CTTTATGTTGATCATAGCCG+TGG | 0.601483 | 8_3:-62189415 | Msa1300590:CDS |
| CAGATGCTAAAATTACTCTA+GGG | 0.601732 | 8_3:-62189636 | Msa1300590:CDS |
| TTTCTCCAAGAGATGTTGCA+TGG | 0.603395 | 8_3:-62189113 | Msa1300590:CDS |
| TCCTATATGAAACTTCCAGT+TGG | 0.603457 | 8_3:+62191607 | None:intergenic |
| CTTGCTAGTCATCAACCTCA+AGG | 0.605823 | 8_3:-62192277 | Msa1300590:CDS |
| GACAATTGCAAGTTCGCCTG+GGG | 0.606200 | 8_3:+62189609 | None:intergenic |
| TGTACACAGATAGCACTGTC+GGG | 0.611207 | 8_3:-62189910 | Msa1300590:intron |
| AAAACCGTGAGAACCACTGA+TGG | 0.612676 | 8_3:-62189715 | Msa1300590:CDS |
| ATTGCATCAGTGCAAAAGAG+AGG | 0.614210 | 8_3:-62192574 | Msa1300590:CDS |
| AGTACATGTAGAAATGGTCA+TGG | 0.619144 | 8_3:+62189791 | None:intergenic |
| TCGGGTATATTGGAAATCAA+GGG | 0.619228 | 8_3:-62189892 | Msa1300590:CDS |
| AACATTGTCGTAGTTTCCGA+CGG | 0.621338 | 8_3:+62191078 | None:intergenic |
| GAATAGAGACATTGTGAACA+AGG | 0.621351 | 8_3:-62189271 | Msa1300590:CDS |
| TAATCAGTGTTCTCAGCAGT+AGG | 0.622872 | 8_3:+62192346 | None:intergenic |
| TGTGAAATGTAATCTCATCA+AGG | 0.627642 | 8_3:+62193081 | None:intergenic |
| ATTACTCTAGGGCTAGCCCC+AGG | 0.631330 | 8_3:-62189625 | Msa1300590:CDS |
| CAGCTAATGTGTCTTCTCCA+CGG | 0.637931 | 8_3:+62189398 | None:intergenic |
| ACTGCCGTTGGTAACGACAT+CGG | 0.650373 | 8_3:-62189571 | Msa1300590:CDS |
| GCAATGATAAAGGCTTTACG+AGG | 0.651377 | 8_3:+62192748 | None:intergenic |
| GGGAACAAATATCAAGCACA+AGG | 0.653827 | 8_3:-62189872 | Msa1300590:CDS |
| CTTAGCAATTTGAGTCTCAG+TGG | 0.653925 | 8_3:+62189666 | None:intergenic |
| GTACTGTAAATATTTATGTG+AGG | 0.660514 | 8_3:-62192450 | Msa1300590:CDS |
| AAGACTAAGATCAGCCACCA+TGG | 0.660961 | 8_3:+62192411 | None:intergenic |
| TCTCGTCGTGTACTCTACAA+AGG | 0.662469 | 8_3:-62191521 | Msa1300590:CDS |
| CAATGATAAAGGCTTTACGA+GGG | 0.668330 | 8_3:+62192749 | None:intergenic |
| GTATCCGATGTCGTTACCAA+CGG | 0.671647 | 8_3:+62189567 | None:intergenic |
| GCCTATTACTGGAATCACCA+TGG | 0.673137 | 8_3:-62192428 | Msa1300590:CDS |
| GAGATTAAAGAAGATCTACA+TGG | 0.678750 | 8_3:-62189847 | Msa1300590:CDS |
| TCAATGAACTGAGCATGTGG+TGG | 0.683271 | 8_3:+62191371 | None:intergenic |
| GTAAGAACAGTAGTCACCGT+CGG | 0.691841 | 8_3:-62191094 | Msa1300590:CDS |
| AGTGGGTGTTGAAAATGCAA+TGG | 0.695330 | 8_3:+62192934 | None:intergenic |
| GTATCAATGAACTGAGCATG+TGG | 0.702682 | 8_3:+62191368 | None:intergenic |
| GCTATAGCTATAGCTCACCA+TGG | 0.712010 | 8_3:-62193034 | Msa1300590:exon |
| TGAACAAGGACATTGTGATG+TGG | 0.719496 | 8_3:-62189257 | Msa1300590:CDS |
| GAAAAGAGCAAGTTTCATGG+TGG | 0.732765 | 8_3:+62193002 | None:intergenic |
| GATGATTACCCACAAATACG+CGG | 0.741074 | 8_3:-62189502 | Msa1300590:CDS |
| TATTACTGGAATCACCATGG+TGG | 0.761493 | 8_3:-62192425 | Msa1300590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTT+CGG | + | chr8_3:62192086-62192105 | None:intergenic | 0.0% |
| !! | CATTGTAAAAAAATAAATAA+GGG | + | chr8_3:62189977-62189996 | None:intergenic | 10.0% |
| !!! | TAATAACTTGAATTTTTTTA+CGG | - | chr8_3:62190416-62190435 | Msa1300590:intron | 10.0% |
| !! | AATAGATTAATTAAATTAGT+TGG | + | chr8_3:62190939-62190958 | None:intergenic | 10.0% |
| !! | TAAAAATTCATTTAATATTG+TGG | + | chr8_3:62191666-62191685 | None:intergenic | 10.0% |
| !! | ATTTACTAATTATAATGTTT+GGG | - | chr8_3:62192671-62192690 | Msa1300590:CDS | 10.0% |
| !!! | AAAAAAAAAATCATACTTTT+TGG | + | chr8_3:62192781-62192800 | None:intergenic | 10.0% |
| !!! | TTATTATATACTGATTAATT+TGG | - | chr8_3:62192842-62192861 | Msa1300590:CDS | 10.0% |
| !! | CCATTGTAAAAAAATAAATA+AGG | + | chr8_3:62189978-62189997 | None:intergenic | 15.0% |
| !!! | CCTTATTTATTTTTTTACAA+TGG | - | chr8_3:62189975-62189994 | Msa1300590:intron | 15.0% |
| !! | ATATCAATTAAAAGATTAGA+GGG | + | chr8_3:62190069-62190088 | None:intergenic | 15.0% |
| !!! | TCTAATCTTTTAATTGATAT+CGG | - | chr8_3:62190069-62190088 | Msa1300590:intron | 15.0% |
| !! | AAAATAAAAAACTTGAAATC+AGG | - | chr8_3:62190110-62190129 | Msa1300590:intron | 15.0% |
| !!! | TTTAATCATTTTAATAAGAG+AGG | + | chr8_3:62190328-62190347 | None:intergenic | 15.0% |
| !! | CTCTTATTAAAATGATTAAA+AGG | - | chr8_3:62190328-62190347 | Msa1300590:intron | 15.0% |
| !!! | TACAAATCGATATTTTAAAT+GGG | + | chr8_3:62190466-62190485 | None:intergenic | 15.0% |
| !!! | ATACAAATCGATATTTTAAA+TGG | + | chr8_3:62190467-62190486 | None:intergenic | 15.0% |
| !! | TATAAAACATTTAGTAAACA+TGG | + | chr8_3:62191166-62191185 | None:intergenic | 15.0% |
| !! | TTATATAAATAATGATATGC+AGG | - | chr8_3:62191181-62191200 | Msa1300590:intron | 15.0% |
| !! | ACAATTAAATGTAAGTAATA+TGG | - | chr8_3:62191217-62191236 | Msa1300590:intron | 15.0% |
| !!! | CTTTAATCTTATTGTTTTAT+TGG | - | chr8_3:62191593-62191612 | Msa1300590:CDS | 15.0% |
| !! | CATTTACTAATTATAATGTT+TGG | - | chr8_3:62192670-62192689 | Msa1300590:CDS | 15.0% |
| !! | TTATAATAGAACTGAAAAAT+GGG | - | chr8_3:62192701-62192720 | Msa1300590:CDS | 15.0% |
| !! | TTAAATCTATTAGTATCTCA+TGG | + | chr8_3:62189443-62189462 | None:intergenic | 20.0% |
| !! | ATGAGATACTAATAGATTTA+AGG | - | chr8_3:62189442-62189461 | Msa1300590:CDS | 20.0% |
| !! | GATATCAATTAAAAGATTAG+AGG | + | chr8_3:62190070-62190089 | None:intergenic | 20.0% |
| !!! | CTAATCTTTTAATTGATATC+GGG | - | chr8_3:62190070-62190089 | Msa1300590:intron | 20.0% |
| !! | CTCATTTATCTCTTATAAAA+AGG | + | chr8_3:62190243-62190262 | None:intergenic | 20.0% |
| !! | TAAAGTAAAATTCTTCAGTT+GGG | + | chr8_3:62190685-62190704 | None:intergenic | 20.0% |
| !! | TTAAAGTAAAATTCTTCAGT+TGG | + | chr8_3:62190686-62190705 | None:intergenic | 20.0% |
| !! | AAAGATTGAAAGATAAGATA+TGG | - | chr8_3:62191346-62191365 | Msa1300590:CDS | 20.0% |
| !!! | AATAGTTGGCAAATTTTAAT+TGG | + | chr8_3:62191929-62191948 | None:intergenic | 20.0% |
| !!! | AGAATTTTTCAAGAAATAGT+TGG | + | chr8_3:62191943-62191962 | None:intergenic | 20.0% |
| !! | TGGTTTATTGTCAAAAAAAA+AGG | - | chr8_3:62192014-62192033 | Msa1300590:intron | 20.0% |
| !!! | CATTTTTCAGTTCTATTATA+AGG | + | chr8_3:62192702-62192721 | None:intergenic | 20.0% |
| !! | CTTATAATAGAACTGAAAAA+TGG | - | chr8_3:62192700-62192719 | Msa1300590:CDS | 20.0% |
| !!! | AATTTGCTAATAATTGATCT+TGG | - | chr8_3:62192811-62192830 | Msa1300590:CDS | 20.0% |
| !!! | GATTAATTTGGAATTTATAC+AGG | - | chr8_3:62192854-62192873 | Msa1300590:CDS | 20.0% |
| ! | AAAAAGATGCTATTCTCAAA+TGG | - | chr8_3:62189346-62189365 | Msa1300590:intron | 25.0% |
| ! | AAAAGATGCTATTCTCAAAT+GGG | - | chr8_3:62189347-62189366 | Msa1300590:intron | 25.0% |
| !! | ATTGATGATAGCAATGATAA+AGG | + | chr8_3:62189412-62189431 | None:intergenic | 25.0% |
| ! | TTTATCATTGCTATCATCAA+TGG | - | chr8_3:62189411-62189430 | Msa1300590:CDS | 25.0% |
| ! | ATAAAAGGAGGATATTTCTT+TGG | + | chr8_3:62189555-62189574 | None:intergenic | 25.0% |
| ! | GTACTGTAAATATTTATGTG+AGG | - | chr8_3:62189697-62189716 | Msa1300590:CDS | 25.0% |
| !! | TTCCTTTTACTTTCCTTTTT+TGG | - | chr8_3:62189941-62189960 | Msa1300590:intron | 25.0% |
| !! | TCCTTTTACTTTCCTTTTTT+GGG | - | chr8_3:62189942-62189961 | Msa1300590:intron | 25.0% |
| !! | GGTTTTTCCTTATTCTAAAT+TGG | - | chr8_3:62189996-62190015 | Msa1300590:intron | 25.0% |
| ! | TTCCTTATTCTAAATTGGTA+TGG | - | chr8_3:62190001-62190020 | Msa1300590:intron | 25.0% |
| ! | TCCTTATTCTAAATTGGTAT+GGG | - | chr8_3:62190002-62190021 | Msa1300590:intron | 25.0% |
| ! | CTAAATAATGTATATGCCAT+TGG | + | chr8_3:62190207-62190226 | None:intergenic | 25.0% |
| !! | TTTAAGACTTTCTTTGATTC+TGG | - | chr8_3:62190701-62190720 | Msa1300590:intron | 25.0% |
| ! | ATTTGTGTGTTTGAACAATA+TGG | - | chr8_3:62190848-62190867 | Msa1300590:intron | 25.0% |
| ! | AACAATATGGTAATATCATG+TGG | - | chr8_3:62190861-62190880 | Msa1300590:intron | 25.0% |
| ! | AAAACTCTTACGAATTCATT+AGG | + | chr8_3:62190908-62190927 | None:intergenic | 25.0% |
| ! | TAATTAAATTAGTTGGTTGC+AGG | + | chr8_3:62190932-62190951 | None:intergenic | 25.0% |
| ! | TCTTACAATCAAATTCACTT+CGG | + | chr8_3:62191039-62191058 | None:intergenic | 25.0% |
| ! | ATAAACTAAATACTTACAGC+AGG | + | chr8_3:62191131-62191150 | None:intergenic | 25.0% |
| ! | AAAAATTCGTAGTGTATTAC+TGG | - | chr8_3:62191300-62191319 | Msa1300590:CDS | 25.0% |
| ! | ATAATTACACACTATTCTAG+TGG | + | chr8_3:62191428-62191447 | None:intergenic | 25.0% |
| ! | TAATTATGTATCTTGTCTCT+TGG | - | chr8_3:62191441-62191460 | Msa1300590:CDS | 25.0% |
| ! | AAATCGACTAACAAACTAAT+AGG | + | chr8_3:62191619-62191638 | None:intergenic | 25.0% |
| !!! | AGTAAGTTTTGACTTTTCAA+AGG | + | chr8_3:62191713-62191732 | None:intergenic | 25.0% |
| !!! | CCAAAAGAGACTTTTTTTTT+TGG | + | chr8_3:62191997-62192016 | None:intergenic | 25.0% |
| !! | CCAAAAAAAAAAGTCTCTTT+TGG | - | chr8_3:62191994-62192013 | Msa1300590:intron | 25.0% |
| ! | CGGTATATGCTAAATATAAT+AGG | + | chr8_3:62192123-62192142 | None:intergenic | 25.0% |
| !!! | ATTAGAGTTATTTTAGTCCA+AGG | + | chr8_3:62192188-62192207 | None:intergenic | 25.0% |
| !!! | TATCTTGATTTTGATATCGA+CGG | - | chr8_3:62192378-62192397 | Msa1300590:CDS | 25.0% |
| !!! | ACACATTCTCTAGTTTTAAT+TGG | + | chr8_3:62193070-62193089 | None:intergenic | 25.0% |
| TGTGAAATGTAATCTCATCA+AGG | + | chr8_3:62189069-62189088 | None:intergenic | 30.0% | |
| ! | GATACTCTTGTTTGGTTAAA+GGG | + | chr8_3:62189242-62189261 | None:intergenic | 30.0% |
| ! | AGATACTCTTGTTTGGTTAA+AGG | + | chr8_3:62189243-62189262 | None:intergenic | 30.0% |
| !! | ATTTGTTATGGACTATGGTT+TGG | + | chr8_3:62189272-62189291 | None:intergenic | 30.0% |
| GTAGTATCATTCCACTATAT+TGG | - | chr8_3:62189309-62189328 | Msa1300590:intron | 30.0% | |
| !! | TGAGAATAGCATCTTTTTCA+GGG | + | chr8_3:62189344-62189363 | None:intergenic | 30.0% |
| ! | TTGAGAATAGCATCTTTTTC+AGG | + | chr8_3:62189345-62189364 | None:intergenic | 30.0% |
| TCTCTGACAATGTTTACAAA+GGG | - | chr8_3:62189478-62189497 | Msa1300590:CDS | 30.0% | |
| !! | TTTTGCACTGATGCAATAAA+AGG | + | chr8_3:62189570-62189589 | None:intergenic | 30.0% |
| !! | GTTTGTTCTAGTTTCACTAT+GGG | - | chr8_3:62189615-62189634 | Msa1300590:CDS | 30.0% |
| TTGGAGAAAAAGAGAATAGA+AGG | - | chr8_3:62189643-62189662 | Msa1300590:CDS | 30.0% | |
| ACCCAAAAAAGGAAAGTAAA+AGG | + | chr8_3:62189946-62189965 | None:intergenic | 30.0% | |
| ! | ACCCATACCAATTTAGAATA+AGG | + | chr8_3:62190006-62190025 | None:intergenic | 30.0% |
| AAATTGGTATGGGTATTATC+TGG | - | chr8_3:62190012-62190031 | Msa1300590:intron | 30.0% | |
| ! | TTTGGATTTTGTGACATATG+TGG | - | chr8_3:62190036-62190055 | Msa1300590:intron | 30.0% |
| ! | GATTTTATCAGACGATCTAA+AGG | - | chr8_3:62190139-62190158 | Msa1300590:intron | 30.0% |
| GATTTGTATAACTTCTCCAA+TGG | - | chr8_3:62190188-62190207 | Msa1300590:intron | 30.0% | |
| CTCTTATAAAAAGGACAAGA+AGG | + | chr8_3:62190234-62190253 | None:intergenic | 30.0% | |
| ! | AGGTATTATTTCTCAAGGAA+TGG | + | chr8_3:62190499-62190518 | None:intergenic | 30.0% |
| CATTGATACATACATTCACT+CGG | - | chr8_3:62190793-62190812 | Msa1300590:intron | 30.0% | |
| CACAAATTGCATTCTTCAAT+AGG | + | chr8_3:62190835-62190854 | None:intergenic | 30.0% | |
| TTGTTTATACATCCACTGAT+AGG | - | chr8_3:62190998-62191017 | Msa1300590:intron | 30.0% | |
| !! | ACTACGACAATGTTTTAGAT+TGG | - | chr8_3:62191078-62191097 | Msa1300590:CDS | 30.0% |
| !! | CTACGACAATGTTTTAGATT+GGG | - | chr8_3:62191079-62191098 | Msa1300590:CDS | 30.0% |
| ! | GGTATATCTGGATTTTCTTA+AGG | - | chr8_3:62191462-62191481 | Msa1300590:CDS | 30.0% |
| !! | AAACGATTTGAAGTCTCTTT+TGG | - | chr8_3:62191751-62191770 | Msa1300590:intron | 30.0% |
| GAGATTAAAGAAGATCTACA+TGG | - | chr8_3:62192300-62192319 | Msa1300590:CDS | 30.0% | |
| AGAAGATCTACATGGTAAAT+TGG | - | chr8_3:62192308-62192327 | Msa1300590:CDS | 30.0% | |
| CAAGATAGTACATGTAGAAA+TGG | + | chr8_3:62192365-62192384 | None:intergenic | 30.0% | |
| TCAGATGCTAAAATTACTCT+AGG | - | chr8_3:62192510-62192529 | Msa1300590:CDS | 30.0% | |
| CAGATGCTAAAATTACTCTA+GGG | - | chr8_3:62192511-62192530 | Msa1300590:CDS | 30.0% | |
| TAATCATCTTCGGTTAAAAG+TGG | + | chr8_3:62192633-62192652 | None:intergenic | 30.0% | |
| TATTTGTGGGTAATCATCTT+CGG | + | chr8_3:62192643-62192662 | None:intergenic | 30.0% | |
| AGAGAAAAGAGCAAGTTTCA+TGG | + | chr8_3:62189151-62189170 | None:intergenic | 35.0% | |
| GACAGTTAGATACTCTTGTT+TGG | + | chr8_3:62189250-62189269 | None:intergenic | 35.0% | |
| !! | GGGATATTTGTTATGGACTA+TGG | + | chr8_3:62189277-62189296 | None:intergenic | 35.0% |
| ! | TTGAGGTGGGATATTTGTTA+TGG | + | chr8_3:62189284-62189303 | None:intergenic | 35.0% |
| GAATGATACTACGTTCTTTG+AGG | + | chr8_3:62189301-62189320 | None:intergenic | 35.0% | |
| CAATGATAAAGGCTTTACGA+GGG | + | chr8_3:62189401-62189420 | None:intergenic | 35.0% | |
| CTATTAGTATCTCATGGCTT+TGG | + | chr8_3:62189437-62189456 | None:intergenic | 35.0% | |
| CTCTCTGACAATGTTTACAA+AGG | - | chr8_3:62189477-62189496 | Msa1300590:CDS | 35.0% | |
| GACAATGTTTACAAAGGGAA+TGG | - | chr8_3:62189483-62189502 | Msa1300590:CDS | 35.0% | |
| ! | CTTTGGAAGTTCTATTGCAA+TGG | + | chr8_3:62189538-62189557 | None:intergenic | 35.0% |
| !! | GGTTTGTTCTAGTTTCACTA+TGG | - | chr8_3:62189614-62189633 | Msa1300590:CDS | 35.0% |
| ATTTATGTGAGGCCTATTAC+TGG | - | chr8_3:62189708-62189727 | Msa1300590:CDS | 35.0% | |
| !!! | CTATTCTGTTTTGGTCCAAA+TGG | + | chr8_3:62189849-62189868 | None:intergenic | 35.0% |
| ! | CTAGCAAGACTATTCTGTTT+TGG | + | chr8_3:62189858-62189877 | None:intergenic | 35.0% |
| GTATGGGTATTATCTGGATT+TGG | - | chr8_3:62190018-62190037 | Msa1300590:intron | 35.0% | |
| ! | TTTTGTGACATATGTGGATG+TGG | - | chr8_3:62190042-62190061 | Msa1300590:intron | 35.0% |
| TTTGTGACATATGTGGATGT+GGG | - | chr8_3:62190043-62190062 | Msa1300590:intron | 35.0% | |
| ! | TACGCAGGTATTATTTCTCA+AGG | + | chr8_3:62190504-62190523 | None:intergenic | 35.0% |
| TCCTATATGAAACTTCCAGT+TGG | + | chr8_3:62190543-62190562 | None:intergenic | 35.0% | |
| ! | TTCTTTGATTCTGGAGAGTT+TGG | - | chr8_3:62190710-62190729 | Msa1300590:intron | 35.0% |
| ATTGCATTCTTCAATAGGCT+TGG | + | chr8_3:62190830-62190849 | None:intergenic | 35.0% | |
| ATCTTGTCTCTTGGTATATC+TGG | - | chr8_3:62191450-62191469 | Msa1300590:CDS | 35.0% | |
| ! | ATCTGGATTTTCTTAAGGCT+AGG | - | chr8_3:62191467-62191486 | Msa1300590:CDS | 35.0% |
| TGACAATTGACAAGTGAAGT+GGG | + | chr8_3:62192162-62192181 | None:intergenic | 35.0% | |
| ATGACAATTGACAAGTGAAG+TGG | + | chr8_3:62192163-62192182 | None:intergenic | 35.0% | |
| TCGGGTATATTGGAAATCAA+GGG | - | chr8_3:62192255-62192274 | Msa1300590:CDS | 35.0% | |
| AGTACATGTAGAAATGGTCA+TGG | + | chr8_3:62192359-62192378 | None:intergenic | 35.0% | |
| GTTCAAAGAGAAAGAGTTAC+TGG | - | chr8_3:62192457-62192476 | Msa1300590:CDS | 35.0% | |
| AATAGAACTGAAAAATGGGC+TGG | - | chr8_3:62192705-62192724 | Msa1300590:CDS | 35.0% | |
| GAATAGAGACATTGTGAACA+AGG | - | chr8_3:62192876-62192895 | Msa1300590:CDS | 35.0% | |
| TGCTCAATAGTGGCATTATA+GGG | + | chr8_3:62192957-62192976 | None:intergenic | 35.0% | |
| ! | TCAAATGAAGTGCTCAATAG+TGG | + | chr8_3:62192967-62192986 | None:intergenic | 35.0% |
| TTCCTCTCAAAGAAATTGGT+TGG | + | chr8_3:62192997-62193016 | None:intergenic | 35.0% | |
| TGGATTCCTCTCAAAGAAAT+TGG | + | chr8_3:62193001-62193020 | None:intergenic | 35.0% | |
| !!! | CTCTTGGAGAAAGTGTTTTA+AGG | + | chr8_3:62193026-62193045 | None:intergenic | 35.0% |
| !!! | TAGTTTTAATTGGAGCAACC+AGG | + | chr8_3:62193060-62193079 | None:intergenic | 35.0% |
| GAAAAGAGCAAGTTTCATGG+TGG | + | chr8_3:62189148-62189167 | None:intergenic | 40.0% | |
| AGAGAACTGATTGGAATGAG+AGG | + | chr8_3:62189185-62189204 | None:intergenic | 40.0% | |
| GTGTAACAGAGAGAACTGAT+TGG | + | chr8_3:62189194-62189213 | None:intergenic | 40.0% | |
| !! | AGTGGGTGTTGAAAATGCAA+TGG | + | chr8_3:62189216-62189235 | None:intergenic | 40.0% |
| GTTTGGTTAAAGGGTCAAGT+GGG | + | chr8_3:62189233-62189252 | None:intergenic | 40.0% | |
| TGTTTGGTTAAAGGGTCAAG+TGG | + | chr8_3:62189234-62189253 | None:intergenic | 40.0% | |
| !! | GATACTACGTTCTTTGAGGT+GGG | + | chr8_3:62189297-62189316 | None:intergenic | 40.0% |
| ! | TGATACTACGTTCTTTGAGG+TGG | + | chr8_3:62189298-62189317 | None:intergenic | 40.0% |
| GGTCATCTAGACCAATATAG+TGG | + | chr8_3:62189323-62189342 | None:intergenic | 40.0% | |
| CGAGGGATTGTTATAACACT+TGG | + | chr8_3:62189384-62189403 | None:intergenic | 40.0% | |
| GCAATGATAAAGGCTTTACG+AGG | + | chr8_3:62189402-62189421 | None:intergenic | 40.0% | |
| GTTCATCAACGGTTAGTGTA+GGG | + | chr8_3:62189512-62189531 | None:intergenic | 40.0% | |
| TGTTCATCAACGGTTAGTGT+AGG | + | chr8_3:62189513-62189532 | None:intergenic | 40.0% | |
| !! | TGCAATGGCTTGTTCATCAA+CGG | + | chr8_3:62189523-62189542 | None:intergenic | 40.0% |
| ! | TGCACTGATGCAATAAAAGG+AGG | + | chr8_3:62189567-62189586 | None:intergenic | 40.0% |
| ATTGCATCAGTGCAAAAGAG+AGG | - | chr8_3:62189573-62189592 | Msa1300590:CDS | 40.0% | |
| ! | AGGTTTGAATCTCTCTGAAG+TGG | - | chr8_3:62189593-62189612 | Msa1300590:CDS | 40.0% |
| !! | GTTCTAGTTTCACTATGGGA+TGG | - | chr8_3:62189619-62189638 | Msa1300590:CDS | 40.0% |
| AGTTTCACTATGGGATGGTT+TGG | - | chr8_3:62189624-62189643 | Msa1300590:CDS | 40.0% | |
| ACCATGGTGATTCCAGTAAT+AGG | + | chr8_3:62189723-62189742 | None:intergenic | 40.0% | |
| TATTACTGGAATCACCATGG+TGG | - | chr8_3:62189722-62189741 | Msa1300590:CDS | 40.0% | |
| CTGCTTCAACATCTCTATCA+TGG | + | chr8_3:62189779-62189798 | None:intergenic | 40.0% | |
| TAATCAGTGTTCTCAGCAGT+AGG | + | chr8_3:62189804-62189823 | None:intergenic | 40.0% | |
| ! | TGCTGAGAACACTGATTACA+GGG | - | chr8_3:62189806-62189825 | Msa1300590:CDS | 40.0% |
| TCAAAACAAAGCCCACCATT+TGG | - | chr8_3:62189831-62189850 | Msa1300590:CDS | 40.0% | |
| !!! | TCTGTTTTGGTCCAAATGGT+GGG | + | chr8_3:62189845-62189864 | None:intergenic | 40.0% |
| !!! | TTCTGTTTTGGTCCAAATGG+TGG | + | chr8_3:62189846-62189865 | None:intergenic | 40.0% |
| AGATCAATGGTCACAGTGTT+AGG | - | chr8_3:62189904-62189923 | Msa1300590:CDS | 40.0% | |
| GGTCACAGTGTTAGGTAATA+AGG | - | chr8_3:62189912-62189931 | Msa1300590:intron | 40.0% | |
| !! | CTGCGTATGATTTTTCAGCT+GGG | - | chr8_3:62190517-62190536 | Msa1300590:intron | 40.0% |
| GCCAACTGGAAGTTTCATAT+AGG | - | chr8_3:62190539-62190558 | Msa1300590:intron | 40.0% | |
| ATAGGATTTGATGTACGAGC+TGG | - | chr8_3:62190557-62190576 | Msa1300590:intron | 40.0% | |
| TCTTCAGTTGGGTCTTGATA+AGG | + | chr8_3:62190674-62190693 | None:intergenic | 40.0% | |
| ! | GATTCTGGAGAGTTTGGATT+TGG | - | chr8_3:62190716-62190735 | Msa1300590:intron | 40.0% |
| ! | GTTTGGATTTGGTCTGTCAA+CGG | - | chr8_3:62190727-62190746 | Msa1300590:intron | 40.0% |
| GTATCAATGAACTGAGCATG+TGG | + | chr8_3:62190782-62190801 | None:intergenic | 40.0% | |
| TAGATTCTTCGACCTATCAG+TGG | + | chr8_3:62191013-62191032 | None:intergenic | 40.0% | |
| AACATTGTCGTAGTTTCCGA+CGG | + | chr8_3:62191072-62191091 | None:intergenic | 40.0% | |
| GGTAAACTCTCTCGAAGATT+GGG | + | chr8_3:62191398-62191417 | None:intergenic | 40.0% | |
| TGGTAAACTCTCTCGAAGAT+TGG | + | chr8_3:62191399-62191418 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | + | chr8_3:62191856-62191875 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr8_3:62191864-62191883 | Msa1300590:intron | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr8_3:62191867-62191886 | Msa1300590:intron | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | - | chr8_3:62191890-62191909 | Msa1300590:intron | 40.0% | |
| AAAAAGGTCCCACTTCACTT+TGG | - | chr8_3:62192030-62192049 | Msa1300590:intron | 40.0% | |
| AAAAGGTCCCACTTCACTTT+GGG | - | chr8_3:62192031-62192050 | Msa1300590:intron | 40.0% | |
| CTTGTCAATTGTCATGTCCT+TGG | - | chr8_3:62192168-62192187 | Msa1300590:intron | 40.0% | |
| ATGTACACAGATAGCACTGT+CGG | - | chr8_3:62192236-62192255 | Msa1300590:intron | 40.0% | |
| GTCGGGTATATTGGAAATCA+AGG | - | chr8_3:62192254-62192273 | Msa1300590:CDS | 40.0% | |
| GGGAACAAATATCAAGCACA+AGG | - | chr8_3:62192275-62192294 | Msa1300590:CDS | 40.0% | |
| TTGGTTTCAGCAAACAGCAT+TGG | - | chr8_3:62192327-62192346 | Msa1300590:CDS | 40.0% | |
| TCTCTTTGAACTTCCATCAG+TGG | + | chr8_3:62192448-62192467 | None:intergenic | 40.0% | |
| CTTAGCAATTTGAGTCTCAG+TGG | + | chr8_3:62192484-62192503 | None:intergenic | 40.0% | |
| !!! | CCAACGGCAGTTTTTTTGTT+AGG | + | chr8_3:62192567-62192586 | None:intergenic | 40.0% |
| CCTAACAAAAAAACTGCCGT+TGG | - | chr8_3:62192564-62192583 | Msa1300590:CDS | 40.0% | |
| CTGGAATTGCTGGAATCAAA+CGG | + | chr8_3:62192605-62192624 | None:intergenic | 40.0% | |
| GATGATTACCCACAAATACG+CGG | - | chr8_3:62192645-62192664 | Msa1300590:CDS | 40.0% | |
| TAAATGCACCGCGTATTTGT+GGG | + | chr8_3:62192656-62192675 | None:intergenic | 40.0% | |
| CTTTATGTTGATCATAGCCG+TGG | - | chr8_3:62192732-62192751 | Msa1300590:CDS | 40.0% | |
| GAGAAGACACATTAGCTGTT+TGG | - | chr8_3:62192754-62192773 | Msa1300590:CDS | 40.0% | |
| TGAACAAGGACATTGTGATG+TGG | - | chr8_3:62192890-62192909 | Msa1300590:CDS | 40.0% | |
| ATTGTGATGTGGCATGTAGT+TGG | - | chr8_3:62192901-62192920 | Msa1300590:CDS | 40.0% | |
| ATAGGGAAATCTTCTTGTGC+TGG | + | chr8_3:62192940-62192959 | None:intergenic | 40.0% | |
| GTGCTCAATAGTGGCATTAT+AGG | + | chr8_3:62192958-62192977 | None:intergenic | 40.0% | |
| !!! | GGAGAAAGTGTTTTAAGGAC+TGG | + | chr8_3:62193021-62193040 | None:intergenic | 40.0% |
| TTTCTCCAAGAGATGTTGCA+TGG | - | chr8_3:62193034-62193053 | Msa1300590:exon | 40.0% | |
| GCTATAGCTGCACTATGTCT+TGG | + | chr8_3:62189101-62189120 | None:intergenic | 45.0% | |
| GCTATAGCTATAGCTCACCA+TGG | - | chr8_3:62189113-62189132 | Msa1300590:CDS | 45.0% | |
| AAGAGCAAGTTTCATGGTGG+TGG | + | chr8_3:62189145-62189164 | None:intergenic | 45.0% | |
| GCCTATTACTGGAATCACCA+TGG | - | chr8_3:62189719-62189738 | Msa1300590:CDS | 45.0% | |
| AAGACTAAGATCAGCCACCA+TGG | + | chr8_3:62189739-62189758 | None:intergenic | 45.0% | |
| ! | CTGCTGAGAACACTGATTAC+AGG | - | chr8_3:62189805-62189824 | Msa1300590:CDS | 45.0% |
| CTTGCTAGTCATCAACCTCA+AGG | - | chr8_3:62189870-62189889 | Msa1300590:CDS | 45.0% | |
| TGACCATTGATCTGAAAGCC+AGG | + | chr8_3:62189897-62189916 | None:intergenic | 45.0% | |
| GGGAAACAGACACCCAAAAA+AGG | + | chr8_3:62189957-62189976 | None:intergenic | 45.0% | |
| CCAGCTGAAAAATCATACGC+AGG | + | chr8_3:62190519-62190538 | None:intergenic | 45.0% | |
| !! | CCTGCGTATGATTTTTCAGC+TGG | - | chr8_3:62190516-62190535 | Msa1300590:intron | 45.0% |
| TCTCGTCGTGTACTCTACAA+AGG | - | chr8_3:62190626-62190645 | Msa1300590:intron | 45.0% | |
| !! | TGTGGTGGACAATCACGATT+AGG | + | chr8_3:62190764-62190783 | None:intergenic | 45.0% |
| TCAATGAACTGAGCATGTGG+TGG | + | chr8_3:62190779-62190798 | None:intergenic | 45.0% | |
| ACATACATTCACTCGGCTGA+TGG | - | chr8_3:62190800-62190819 | Msa1300590:intron | 45.0% | |
| GTAAGAACAGTAGTCACCGT+CGG | - | chr8_3:62191053-62191072 | Msa1300590:CDS | 45.0% | |
| GATTGGGAGTTCAAAGCAAG+TGG | - | chr8_3:62191095-62191114 | Msa1300590:CDS | 45.0% | |
| CTTCGAGAGAGTTTACCAAG+CGG | - | chr8_3:62191401-62191420 | Msa1300590:CDS | 45.0% | |
| TTCGAGAGAGTTTACCAAGC+GGG | - | chr8_3:62191402-62191421 | Msa1300590:CDS | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr8_3:62191884-62191903 | Msa1300590:intron | 45.0% |
| CCTGTAACCCAAAGTGAAGT+GGG | + | chr8_3:62192041-62192060 | None:intergenic | 45.0% | |
| ACCTGTAACCCAAAGTGAAG+TGG | + | chr8_3:62192042-62192061 | None:intergenic | 45.0% | |
| AAGTGGGACAGTTGTTGTCT+TGG | + | chr8_3:62192146-62192165 | None:intergenic | 45.0% | |
| TGTACACAGATAGCACTGTC+GGG | - | chr8_3:62192237-62192256 | Msa1300590:intron | 45.0% | |
| GATAGCACTGTCGGGTATAT+TGG | - | chr8_3:62192245-62192264 | Msa1300590:CDS | 45.0% | |
| AAAACCGTGAGAACCACTGA+TGG | - | chr8_3:62192432-62192451 | Msa1300590:CDS | 45.0% | |
| ACTTCCATCAGTGGTTCTCA+CGG | + | chr8_3:62192439-62192458 | None:intergenic | 45.0% | |
| TGACAATTGCAAGTTCGCCT+GGG | + | chr8_3:62192542-62192561 | None:intergenic | 45.0% | |
| TTGACAATTGCAAGTTCGCC+TGG | + | chr8_3:62192543-62192562 | None:intergenic | 45.0% | |
| GTATCCGATGTCGTTACCAA+CGG | + | chr8_3:62192583-62192602 | None:intergenic | 45.0% | |
| TCGGTTAAAAGTGGATGAGC+TGG | + | chr8_3:62192624-62192643 | None:intergenic | 45.0% | |
| GTAAATGCACCGCGTATTTG+TGG | + | chr8_3:62192657-62192676 | None:intergenic | 45.0% | |
| !! | AGAACTGAAAAATGGGCTGG+TGG | - | chr8_3:62192708-62192727 | Msa1300590:CDS | 45.0% |
| CAGCTAATGTGTCTTCTCCA+CGG | + | chr8_3:62192752-62192771 | None:intergenic | 45.0% | |
| TGAGCACTTCATTTGAGCTC+AGG | - | chr8_3:62192971-62192990 | Msa1300590:CDS | 45.0% | |
| GGCCAACCAATTTCTTTGAG+AGG | - | chr8_3:62192992-62193011 | Msa1300590:CDS | 45.0% | |
| !! | CATGGTGGTGGAAAAAGCCA+TGG | + | chr8_3:62189133-62189152 | None:intergenic | 50.0% |
| AGTCATCAACCTCAAGGTCC+TGG | - | chr8_3:62189876-62189895 | Msa1300590:CDS | 50.0% | |
| ATCTGAAAGCCAGGACCTTG+AGG | + | chr8_3:62189888-62189907 | None:intergenic | 50.0% | |
| ! | GGTCCTGGCTTTCAGATCAA+TGG | - | chr8_3:62189891-62189910 | Msa1300590:CDS | 50.0% |
| !! | GATTTTTCAGCTGGGCCAAC+TGG | - | chr8_3:62190525-62190544 | Msa1300590:intron | 50.0% |
| ATGTGGCGTCACACTGAAAC+TGG | - | chr8_3:62190878-62190897 | Msa1300590:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr8_3:62191872-62191891 | Msa1300590:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | + | chr8_3:62191877-62191896 | None:intergenic | 50.0% | |
| ! | CCCACTTCACTTTGGGTTAC+AGG | - | chr8_3:62192038-62192057 | Msa1300590:intron | 50.0% |
| TGGGACAGTTGTTGTCTTGG+CGG | + | chr8_3:62192143-62192162 | None:intergenic | 50.0% | |
| GACAATTGCAAGTTCGCCTG+GGG | + | chr8_3:62192541-62192560 | None:intergenic | 50.0% | |
| !! | ACTGCCGTTGGTAACGACAT+CGG | - | chr8_3:62192576-62192595 | Msa1300590:CDS | 50.0% |
| AGTGGATGAGCTGGAATTGC+TGG | + | chr8_3:62192615-62192634 | None:intergenic | 50.0% | |
| CACTATTCTAGTGGCCCGCT+TGG | + | chr8_3:62191419-62191438 | None:intergenic | 55.0% | |
| !! | ATTACTCTAGGGCTAGCCCC+AGG | - | chr8_3:62192522-62192541 | Msa1300590:CDS | 55.0% |
| CCAGGCCATGCAACATCTCT+TGG | + | chr8_3:62193042-62193061 | None:intergenic | 55.0% | |
| CCAAGAGATGTTGCATGGCC+TGG | - | chr8_3:62193039-62193058 | Msa1300590:five_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 62189064 | 62193105 | 62189064 | ID=Msa1300590;Name=Msa1300590 |
| chr8_3 | mRNA | 62189064 | 62193105 | 62189064 | ID=Msa1300590-mRNA-1;Parent=Msa1300590;Name=Msa1300590-mRNA-1;_AED=0.02;_eAED=0.02;_QI=68|1|1|1|1|1|5|31|675 |
| chr8_3 | exon | 62189064 | 62189293 | 62189064 | ID=Msa1300590-mRNA-1:exon:18506;Parent=Msa1300590-mRNA-1 |
| chr8_3 | exon | 62189385 | 62189923 | 62189385 | ID=Msa1300590-mRNA-1:exon:18505;Parent=Msa1300590-mRNA-1 |
| chr8_3 | exon | 62191036 | 62191149 | 62191036 | ID=Msa1300590-mRNA-1:exon:18504;Parent=Msa1300590-mRNA-1 |
| chr8_3 | exon | 62191253 | 62191634 | 62191253 | ID=Msa1300590-mRNA-1:exon:18503;Parent=Msa1300590-mRNA-1 |
| chr8_3 | exon | 62192244 | 62193105 | 62192244 | ID=Msa1300590-mRNA-1:exon:18502;Parent=Msa1300590-mRNA-1 |
| chr8_3 | five_prime_UTR | 62193038 | 62193105 | 62193038 | ID=Msa1300590-mRNA-1:five_prime_utr;Parent=Msa1300590-mRNA-1 |
| chr8_3 | CDS | 62192244 | 62193037 | 62192244 | ID=Msa1300590-mRNA-1:cds;Parent=Msa1300590-mRNA-1 |
| chr8_3 | CDS | 62191253 | 62191634 | 62191253 | ID=Msa1300590-mRNA-1:cds;Parent=Msa1300590-mRNA-1 |
| chr8_3 | CDS | 62191036 | 62191149 | 62191036 | ID=Msa1300590-mRNA-1:cds;Parent=Msa1300590-mRNA-1 |
| chr8_3 | CDS | 62189385 | 62189923 | 62189385 | ID=Msa1300590-mRNA-1:cds;Parent=Msa1300590-mRNA-1 |
| chr8_3 | CDS | 62189095 | 62189293 | 62189095 | ID=Msa1300590-mRNA-1:cds;Parent=Msa1300590-mRNA-1 |
| chr8_3 | three_prime_UTR | 62189064 | 62189094 | 62189064 | ID=Msa1300590-mRNA-1:three_prime_utr;Parent=Msa1300590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
