AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0324220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0324220 MtrunA17_Chr2g0301661 96.367 523 19 0 1 523 1 523 0.0 1002
Msa0324220 MtrunA17_Chr2g0301471 92.543 523 39 0 1 523 1 523 0.0 949
Msa0324220 MtrunA17_Chr4g0070101 67.048 525 167 4 1 523 3 523 0.0 714
Msa0324220 MtrunA17_Chr4g0070111 74.113 282 73 0 242 523 1 282 1.26e-167 475
Msa0324220 MtrunA17_Chr2g0286701 83.761 234 38 0 1 234 1 234 1.62e-143 415
Msa0324220 MtrunA17_Chr2g0305211 39.766 513 299 7 14 519 5 514 1.31e-140 416
Msa0324220 MtrunA17_Chr2g0305231 39.766 513 299 7 14 519 5 514 1.31e-140 416
Msa0324220 MtrunA17_Chr2g0304721 41.715 513 288 8 13 519 4 511 1.42e-140 415
Msa0324220 MtrunA17_Chr2g0304651 38.953 516 299 8 13 519 4 512 7.35e-132 393
Msa0324220 MtrunA17_Chr4g0070121 63.810 210 73 2 27 234 29 237 2.34e-85 263
Msa0324220 MtrunA17_Chr2g0286671 88.462 104 12 0 420 523 1 104 2.73e-62 199
Msa0324220 MtrunA17_Chr2g0286681 70.796 113 32 1 284 395 5 117 4.26e-51 170
Msa0324220 MtrunA17_Chr2g0286691 72.059 68 19 0 233 300 10 77 2.60e-30 113
Msa0324220 MtrunA17_Chr1g0169111 26.178 382 218 16 6 381 94 417 7.20e-18 86.7
Msa0324220 MtrunA17_Chr8g0352481 27.686 242 117 8 13 229 3 211 5.92e-16 80.1
Msa0324220 MtrunA17_Chr1g0182991 26.216 370 210 16 16 381 27 337 3.38e-15 77.8
Msa0324220 MtrunA17_Chr7g0268621 27.966 236 126 9 16 246 8 204 2.64e-14 74.7
Msa0324220 MtrunA17_Chr2g0301651 90.909 33 3 0 420 452 1 33 4.78e-14 66.2
Msa0324220 MtrunA17_Chr7g0262591 25.105 474 267 19 16 484 26 416 6.18e-14 73.9
Msa0324220 MtrunA17_Chr3g0091441 29.167 240 121 9 14 227 13 229 1.82e-13 72.4
Msa0324220 MtrunA17_Chr1g0148801 24.054 370 215 14 16 381 18 325 4.03e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0324220 AT1G19250.1 61.598 513 195 2 9 520 8 519 0.0 697
Msa0324220 AT5G45180.1 55.876 485 174 4 12 496 11 455 0.0 573
Msa0324220 AT2G33230.1 27.202 386 190 20 16 381 34 348 3.11e-15 78.2
Msa0324220 AT1G04610.1 26.400 375 207 18 16 381 39 353 3.73e-14 75.1
Msa0324220 AT4G13260.2 26.506 249 143 10 16 262 30 240 2.71e-13 71.2
Msa0324220 AT4G13260.1 23.656 372 218 13 16 381 30 341 3.24e-13 72.0
Msa0324220 AT1G12200.1 27.027 259 134 8 1 231 1 232 5.73e-13 71.6
Msa0324220 AT1G12200.2 27.027 259 134 8 1 231 1 232 6.31e-13 70.9
Msa0324220 AT5G11320.1 25.543 368 210 15 16 381 19 324 1.17e-12 70.1
Msa0324220 AT5G11320.2 25.272 368 211 15 16 381 19 324 1.50e-12 69.7
Msa0324220 AT1G62620.2 24.291 247 133 8 14 233 13 232 6.89e-12 67.8
Msa0324220 AT1G62620.1 24.303 251 136 8 8 231 7 230 7.30e-12 67.8
Msa0324220 AT1G65860.1 26.587 252 123 12 9 231 8 226 1.34e-11 67.0
Msa0324220 AT1G63370.1 23.904 251 137 8 8 231 7 230 1.55e-11 67.0
Msa0324220 AT1G62560.2 24.400 250 130 10 9 230 8 226 1.65e-11 66.6
Msa0324220 AT1G63370.2 23.715 253 139 8 8 233 7 232 1.89e-11 65.9
Msa0324220 AT1G62560.1 24.303 251 131 10 9 231 8 227 1.98e-11 66.6

Find 135 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTCTCATGCTGAAATTT+TGG 0.072056 2_4:-29545824 Msa0324220:CDS
TCTTCCTCAAATGGGTGTTC+TGG 0.276233 2_4:+29541459 None:intergenic
AATGCTTTCACAAACAATTA+AGG 0.289580 2_4:-29540764 Msa0324220:CDS
ATTGGACACTTCCACATTAT+AGG 0.303294 2_4:-29542552 Msa0324220:CDS
CTAATTCAATTGGTGGTGTT+TGG 0.306081 2_4:-29545942 Msa0324220:CDS
TGATGAAATATGTGAAGATT+TGG 0.311891 2_4:-29540668 Msa0324220:CDS
TTGCGTCCGATTCATTAGTT+TGG 0.314121 2_4:+29545632 None:intergenic
CCAATTCTAGACACTATAAT+TGG 0.315773 2_4:+29546042 None:intergenic
GAAAGATTGAGATTTCTATT+TGG 0.316351 2_4:-29540572 Msa0324220:exon
ATTGTGCATGGTTGCCCTTC+TGG 0.318883 2_4:+29542592 None:intergenic
AAACTTCCGTTTGAGAAGTA+TGG 0.319264 2_4:-29541489 Msa0324220:CDS
TAATGAATCGGACGCAATTC+AGG 0.324489 2_4:-29545626 Msa0324220:intron
TATTTACCATTGGAGATAAT+AGG 0.327759 2_4:+29542431 None:intergenic
GATGCAAAATCTTCCTCAAA+TGG 0.353751 2_4:+29541450 None:intergenic
GGGAAAGAAGGTTGTGGTTG+TGG 0.353865 2_4:-29544748 Msa0324220:CDS
TGAGCCTTTCTGTAGCTTGT+TGG 0.361255 2_4:-29541235 Msa0324220:CDS
ATACGTTCCATGTGGCTTGC+TGG 0.361433 2_4:-29540826 Msa0324220:CDS
AAGATTTGGGTTGGCATACT+TGG 0.370246 2_4:-29540654 Msa0324220:CDS
AGCTACTAGTGACCTTGTTA+AGG 0.378740 2_4:-29544769 Msa0324220:CDS
TTTGGAGACATTGTTCCTAT+AGG 0.379655 2_4:-29545924 Msa0324220:CDS
CCAATTATAGTGTCTAGAAT+TGG 0.380149 2_4:-29546042 Msa0324220:CDS
GACCATGGAAATCCACTTCC+TGG 0.382588 2_4:-29545679 Msa0324220:CDS
CCTCCACCAAACACCAAATC+AGG 0.382770 2_4:-29542479 Msa0324220:CDS
AACACCACCAATTGAATTAG+TGG 0.384296 2_4:+29545945 None:intergenic
TTTGAAGCCACTAATTCAAT+TGG 0.393284 2_4:-29545952 Msa0324220:CDS
TAACCCACAAAGGCCATGTT+TGG 0.399285 2_4:+29540883 None:intergenic
GATGTTGTTCTCCTTGCAAC+TGG 0.404208 2_4:-29541294 Msa0324220:CDS
GTAAACCCTGATTTGGTGTT+TGG 0.407304 2_4:+29542473 None:intergenic
AGGAACTGCATCACAACATT+TGG 0.413647 2_4:-29540703 Msa0324220:CDS
GGAAAGAAGGTTGTGGTTGT+GGG 0.417388 2_4:-29544747 Msa0324220:CDS
GATGAAATATGTGAAGATTT+GGG 0.417877 2_4:-29540667 Msa0324220:CDS
TGGTGGAAATGAAGTTTGTT+CGG 0.419334 2_4:-29545738 Msa0324220:CDS
CATGGAAATGTCGGCATCAA+TGG 0.422700 2_4:+29544861 None:intergenic
GGTGGAAATGAAGTTTGTTC+GGG 0.424789 2_4:-29545737 Msa0324220:CDS
GATTCCAAACATGGCCTTTG+TGG 0.425206 2_4:-29540887 Msa0324220:CDS
AATTGTGTTTACCTGTATAG+TGG 0.425289 2_4:+29541192 None:intergenic
AAGTGGATTTCCATGGTCAT+TGG 0.427102 2_4:+29545684 None:intergenic
CTCCTTGCAACTGGTTATGA+TGG 0.429093 2_4:-29541285 Msa0324220:CDS
ATCAAGTTTACAATAATCAA+TGG 0.431413 2_4:+29544797 None:intergenic
GTGTCTAGAATTGGCATCAT+AGG 0.439915 2_4:-29546033 Msa0324220:CDS
TAGGGCTGTAGTGAAAGAAT+TGG 0.441584 2_4:+29546085 None:intergenic
CAAGGGCCCTGAGGTGTTCA+AGG 0.442534 2_4:-29544835 Msa0324220:CDS
AGTGGATTTCCATGGTCATT+GGG 0.451274 2_4:+29545685 None:intergenic
ACCTTACCCTTGAACACCTC+AGG 0.452350 2_4:+29544828 None:intergenic
GTGGTTTGCACTGGAAAATA+TGG 0.455978 2_4:-29544891 Msa0324220:CDS
ATTTGCCTGTGCACATTCCA+TGG 0.457913 2_4:+29544698 None:intergenic
TTCAATCCATACTTCTCAAA+CGG 0.458388 2_4:+29541483 None:intergenic
CCCTGAGGTGTTCAAGGGTA+AGG 0.458830 2_4:-29544829 Msa0324220:CDS
TTCTGTCCAAACTAATGAAT+CGG 0.467681 2_4:-29545638 Msa0324220:CDS
CTGGTACCATGCCACTATAC+AGG 0.469016 2_4:-29541203 Msa0324220:intron
GCTACTAGTGACCTTGTTAA+GGG 0.472706 2_4:-29544768 Msa0324220:CDS
CACTTCCACATTATAGGATG+TGG 0.475745 2_4:-29542546 Msa0324220:CDS
AAGTTGCCTTGAGTGGCCAT+AGG 0.476345 2_4:+29546066 None:intergenic
ATTCCAAACATGGCCTTTGT+GGG 0.477703 2_4:-29540886 Msa0324220:CDS
AAACTTCATTTCCACCACTT+TGG 0.481987 2_4:+29545744 None:intergenic
TGACCTTGTTAAGGGAAAGA+AGG 0.483185 2_4:-29544760 Msa0324220:CDS
GAAACCAGAACACCCATTTG+AGG 0.486081 2_4:-29541463 Msa0324220:CDS
AACCATGCACAATGATCATA+AGG 0.486955 2_4:-29542582 Msa0324220:CDS
ATGCAAAATCTTCCTCAAAT+GGG 0.488179 2_4:+29541451 None:intergenic
CACTTCCTGGTCGTCCTGTG+TGG 0.488678 2_4:-29545666 Msa0324220:CDS
CCAAAATTTCAGCATGAGAA+GGG 0.489328 2_4:+29545824 None:intergenic
CCATCCATCGATTCCAAACA+TGG 0.490544 2_4:-29540896 Msa0324220:CDS
TTATAGTCACCAGCAGTGTA+AGG 0.496419 2_4:+29540598 None:intergenic
GAAGCCACTAATTCAATTGG+TGG 0.496741 2_4:-29545949 Msa0324220:CDS
AACCCTGATTTGGTGTTTGG+TGG 0.497741 2_4:+29542476 None:intergenic
GCATTTACTCCTTACACTGC+TGG 0.499416 2_4:-29540607 Msa0324220:CDS
AGAATTGGCATCATAGGTGC+TGG 0.500736 2_4:-29546027 Msa0324220:CDS
AGCTCCCACACAGGACGACC+AGG 0.506825 2_4:+29545661 None:intergenic
ACCTCAGGGCCCTTGTTGCA+TGG 0.509062 2_4:+29544843 None:intergenic
ATTCTTTCACTACAGCCCTA+TGG 0.509923 2_4:-29546082 Msa0324220:exon
TCCAAAATTTCAGCATGAGA+AGG 0.510869 2_4:+29545823 None:intergenic
GAGTTTGTAGTGGTTTGCAC+TGG 0.512700 2_4:-29544900 Msa0324220:CDS
AAGTTTGTTCGGGACAAAGA+AGG 0.514045 2_4:-29545727 Msa0324220:CDS
CTGAAGCTTAGTACACCTAT+AGG 0.515356 2_4:+29545909 None:intergenic
ATGCCTCCTATTATCTCCAA+TGG 0.520516 2_4:-29542437 Msa0324220:intron
TGATCATAAGGAGTTTGCAT+TGG 0.525875 2_4:-29542570 Msa0324220:CDS
CCTGATTTGGTGTTTGGTGG+AGG 0.527093 2_4:+29542479 None:intergenic
CAACCTTCTTTCCCTTAACA+AGG 0.529813 2_4:+29544757 None:intergenic
AGTTGCCTTGAGTGGCCATA+GGG 0.533034 2_4:+29546067 None:intergenic
TCCCATCATAACCAGTTGCA+AGG 0.534071 2_4:+29541283 None:intergenic
AAGCCACATGGAACGTATCT+CGG 0.538091 2_4:+29540831 None:intergenic
ATTTGGGTTGGCATACTTGG+AGG 0.538869 2_4:-29540651 Msa0324220:CDS
AATTGGTAAGTTGCCTTGAG+TGG 0.544028 2_4:+29546059 None:intergenic
ACTTCCTGGTCGTCCTGTGT+GGG 0.544048 2_4:-29545665 Msa0324220:CDS
CACACAGGACGACCAGGAAG+TGG 0.544605 2_4:+29545667 None:intergenic
CCCTTGTTGCATGGAAATGT+CGG 0.545326 2_4:+29544852 None:intergenic
GAATGTGCACAGGCAAATCA+AGG 0.545568 2_4:-29544693 Msa0324220:intron
TCCTTGCAACTGGTTATGAT+GGG 0.545738 2_4:-29541284 Msa0324220:CDS
AAGGCCATGTTTGGAATCGA+TGG 0.546006 2_4:+29540892 None:intergenic
TTACCATTGGAGATAATAGG+AGG 0.558881 2_4:+29542434 None:intergenic
CTAAGCTTCAGTCACAAACA+TGG 0.565932 2_4:-29545897 Msa0324220:CDS
AACAAGCTACAGAAAGGCTC+AGG 0.566868 2_4:+29541237 None:intergenic
TCATAGAGTCCTACTTGCTG+TGG 0.569108 2_4:-29541512 Msa0324220:CDS
GTTTGGAATCGATGGATGGA+CGG 0.572935 2_4:+29540900 None:intergenic
AGCTTGTTGGAATACCCTAC+TGG 0.573175 2_4:-29541222 Msa0324220:CDS
TGTTAAGGGAAAGAAGGTTG+TGG 0.573393 2_4:-29544754 Msa0324220:CDS
TATAGTGGCATGGTACCAGT+AGG 0.579959 2_4:+29541207 None:intergenic
CCATGTTTGGAATCGATGGA+TGG 0.583448 2_4:+29540896 None:intergenic
ATCAGCTATTGATCTAGCCA+TGG 0.583633 2_4:-29544715 Msa0324220:CDS
AAATATGTGAAGATTTGGGT+TGG 0.584905 2_4:-29540663 Msa0324220:CDS
ACTTGTTATGAAGGACCAGA+AGG 0.585320 2_4:-29542607 Msa0324220:intron
TCAAAAGAGCATCAAAGTGG+TGG 0.590237 2_4:-29541365 Msa0324220:CDS
ACTTCCACATTATAGGATGT+GGG 0.591116 2_4:-29542545 Msa0324220:CDS
ATCATAGGTGCTGGAGTGAG+TGG 0.592554 2_4:-29546018 Msa0324220:CDS
TTCACAAACAATTAAGGACA+TGG 0.592895 2_4:-29540758 Msa0324220:CDS
TCTAGCCATGGAATGTGCAC+AGG 0.594425 2_4:-29544703 Msa0324220:CDS
GTACCACTTCGAGTTTGTAG+TGG 0.594431 2_4:-29544910 Msa0324220:CDS
TATTCCAACAAGCTACAGAA+AGG 0.603701 2_4:+29541231 None:intergenic
GCCGACATTTCCATGCAACA+AGG 0.605363 2_4:-29544853 Msa0324220:CDS
TGTTTACCTGTATAGTGGCA+TGG 0.612113 2_4:+29541197 None:intergenic
CGGAAGTTTCCACAGCAAGT+AGG 0.614813 2_4:+29541503 None:intergenic
AAGGGCCCTGAGGTGTTCAA+GGG 0.617677 2_4:-29544834 Msa0324220:CDS
TACAGCCCTATGGCCACTCA+AGG 0.619181 2_4:-29546072 Msa0324220:exon
ATGATATTAAACAGAGACGT+GGG 0.621879 2_4:-29541545 Msa0324220:intron
GGACGTCTACCCAATGACCA+TGG 0.623160 2_4:-29545694 Msa0324220:CDS
CCTTACCCTTGAACACCTCA+GGG 0.626128 2_4:+29544829 None:intergenic
CTCCTTATGATCATTGTGCA+TGG 0.626136 2_4:+29542580 None:intergenic
CTCCACCAAACACCAAATCA+GGG 0.629606 2_4:-29542478 Msa0324220:CDS
GACCAGGAAGTGGATTTCCA+TGG 0.632802 2_4:+29545677 None:intergenic
TATGTTCAACACCAAAGTGG+TGG 0.633153 2_4:-29545755 Msa0324220:CDS
TGGACAGAAAGCTCCCACAC+AGG 0.633526 2_4:+29545652 None:intergenic
ACTCCCCACATCCTATAATG+TGG 0.633850 2_4:+29542541 None:intergenic
CTTGTTATGAAGGACCAGAA+GGG 0.637745 2_4:-29542606 Msa0324220:intron
AAACCACTACAAACTCGAAG+TGG 0.640615 2_4:+29544907 None:intergenic
TAATAGACCAGCAAGCCACA+TGG 0.644884 2_4:+29540819 None:intergenic
CTTCCACATTATAGGATGTG+GGG 0.652290 2_4:-29542544 Msa0324220:CDS
TCTTCAAAAGAGCATCAAAG+TGG 0.668843 2_4:-29541368 Msa0324220:CDS
TCCATGCAACAAGGGCCCTG+AGG 0.681570 2_4:-29544844 Msa0324220:CDS
ACTCTCAACATAACCCACAA+AGG 0.682237 2_4:+29540873 None:intergenic
TGTTATGTTCAACACCAAAG+TGG 0.683704 2_4:-29545758 Msa0324220:CDS
ATAGTGGCATGGTACCAGTA+GGG 0.697965 2_4:+29541208 None:intergenic
CCGACATTTCCATGCAACAA+GGG 0.702622 2_4:-29544852 Msa0324220:CDS
AATGATATTAAACAGAGACG+TGG 0.716066 2_4:-29541546 Msa0324220:intron
CATCCGAGATACGTTCCATG+TGG 0.741395 2_4:-29540834 Msa0324220:CDS
TGTTTGGTGGAGGAACTGTG+CGG 0.784861 2_4:+29542489 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATAAATAAATAAA+TGG - chr2_4:29542510-29542529 Msa0324220:CDS 0.0%
!! ATTATATATATATAAATTAA+AGG + chr2_4:29542964-29542983 None:intergenic 0.0%
!!! ATTTAAATTTTTTTTTTATA+CGG + chr2_4:29544739-29544758 None:intergenic 0.0%
!!! AAAAATATCAAATTTTAACT+CGG + chr2_4:29541244-29541263 None:intergenic 10.0%
!!! TATATATTAAGTTACTTTTA+TGG - chr2_4:29541362-29541381 Msa0324220:CDS 10.0%
!!! ATATATTAAGTTACTTTTAT+GGG - chr2_4:29541363-29541382 Msa0324220:CDS 10.0%
!!! TTGTTAATTTTTTTTTATAG+GGG + chr2_4:29542171-29542190 None:intergenic 10.0%
!!! ACTAATTTTAAAAAATAAGA+AGG - chr2_4:29543518-29543537 Msa0324220:intron 10.0%
!!! TTTTTTAATTGAATTATTAC+AGG - chr2_4:29543575-29543594 Msa0324220:intron 10.0%
!! GAATTTAAAAAATAATTCAA+TGG + chr2_4:29544238-29544257 None:intergenic 10.0%
!!! TAAACAATTTCTTTTTATAA+GGG - chr2_4:29544944-29544963 Msa0324220:intron 10.0%
!!! CTAGAAAATTAATTAATTTT+AGG + chr2_4:29545017-29545036 None:intergenic 10.0%
!!! TAATTTTAAGTGTTTAATTG+TGG + chr2_4:29541171-29541190 None:intergenic 15.0%
!!! TTTAAAATGTCAAATGTTAT+TGG - chr2_4:29541269-29541288 Msa0324220:CDS 15.0%
!!! TATATTAAGTTACTTTTATG+GGG - chr2_4:29541364-29541383 Msa0324220:CDS 15.0%
!! AAATTAACAAAAAATACACA+TGG - chr2_4:29542181-29542200 Msa0324220:intron 15.0%
!!! AAAATGTACAATAATCTTTT+TGG + chr2_4:29542221-29542240 None:intergenic 15.0%
!! GTCAAAAAAAAAAATAAACT+CGG - chr2_4:29542711-29542730 Msa0324220:intron 15.0%
!! TCAAAAAAAAAAATAAACTC+GGG - chr2_4:29542712-29542731 Msa0324220:intron 15.0%
!! CTAAAATTAGAATAATGATA+TGG + chr2_4:29542806-29542825 None:intergenic 15.0%
!! AATAAGGAATCATAAAATAA+AGG + chr2_4:29543709-29543728 None:intergenic 15.0%
!! GAGAAAGATAATATAAAATA+AGG + chr2_4:29543725-29543744 None:intergenic 15.0%
!!! ATTTATGTTTTGTCTTAATT+AGG + chr2_4:29543820-29543839 None:intergenic 15.0%
!! CAAATAAAGAAAAACATAAA+AGG + chr2_4:29543915-29543934 None:intergenic 15.0%
!!! TTTTAAATTCATGTTTTTAG+TGG - chr2_4:29544248-29544267 Msa0324220:intron 15.0%
!! TTATCAAAAAAAAATGTTGA+TGG - chr2_4:29544602-29544621 Msa0324220:intron 15.0%
!! TTAATTATTGTCTCTAAATT+TGG - chr2_4:29544625-29544644 Msa0324220:intron 15.0%
!! TCTATAATTGAAAGATTATT+TGG - chr2_4:29544765-29544784 Msa0324220:CDS 15.0%
!!! CTAAACAATTTCTTTTTATA+AGG - chr2_4:29544943-29544962 Msa0324220:intron 15.0%
!!! AAACAATTTCTTTTTATAAG+GGG - chr2_4:29544945-29544964 Msa0324220:intron 15.0%
!!! GATAAAATCATCTTATTTGA+GGG + chr2_4:29541543-29541562 None:intergenic 20.0%
!!! AGATAAAATCATCTTATTTG+AGG + chr2_4:29541544-29541563 None:intergenic 20.0%
!! TGAATATCTCATATATATCA+AGG - chr2_4:29541570-29541589 Msa0324220:intron 20.0%
!! ATCAAGTTTACAATAATCAA+TGG + chr2_4:29541835-29541854 None:intergenic 20.0%
!! TAAAAAATCAAACGATTTCT+TGG + chr2_4:29542457-29542476 None:intergenic 20.0%
!! TAGAAATATTAGTTATATCG+AGG + chr2_4:29543085-29543104 None:intergenic 20.0%
!! TTTAAATCATTCTTCTTATG+TGG + chr2_4:29543196-29543215 None:intergenic 20.0%
!! TTTCCATCATAAATTAAACT+CGG + chr2_4:29543224-29543243 None:intergenic 20.0%
!!! TTTTTTTTCTGACTTAACTT+AGG + chr2_4:29543361-29543380 None:intergenic 20.0%
!! AAATCATTCAAAAGAAAGAT+AGG - chr2_4:29543380-29543399 Msa0324220:intron 20.0%
!! TTTGTCTTAATTAGGAATAA+TGG + chr2_4:29543812-29543831 None:intergenic 20.0%
!! TTAAAAAACGCAAAAGTTTA+TGG + chr2_4:29543970-29543989 None:intergenic 20.0%
!! AGATCATATTTATTTACCAT+TGG + chr2_4:29544211-29544230 None:intergenic 20.0%
!! AATAACTAAAATTTAGAGAC+TGG - chr2_4:29544290-29544309 Msa0324220:intron 20.0%
!! TAACATAGTATAGAGAAAAT+TGG - chr2_4:29544363-29544382 Msa0324220:intron 20.0%
!!! TTTTTTTTTCTTTTCTCATG+AGG + chr2_4:29544457-29544476 None:intergenic 20.0%
!!! AAATTAAAGTATTTGACCAA+TGG + chr2_4:29544575-29544594 None:intergenic 20.0%
!! TAATCTTTCAATTATAGAGA+TGG + chr2_4:29544763-29544782 None:intergenic 20.0%
!!! ATTGAAAGATTATTTGGTTT+TGG - chr2_4:29544771-29544790 Msa0324220:CDS 20.0%
!! GCATCAAATTTCAAAATTTA+AGG - chr2_4:29544800-29544819 Msa0324220:CDS 20.0%
!! GTTAATATATGTTTATTCCT+CGG + chr2_4:29544994-29545013 None:intergenic 20.0%
!!! ATTTTGATGTATTTTTTGTC+AGG - chr2_4:29545702-29545721 Msa0324220:CDS 20.0%
!!! TTTTGATGTATTTTTTGTCA+GGG - chr2_4:29545703-29545722 Msa0324220:CDS 20.0%
!! ATGAATTTAGTGATTTTCCA+TGG - chr2_4:29540759-29540778 Msa0324220:CDS 25.0%
! AACAAAAATTCGAATTTGTC+TGG - chr2_4:29541490-29541509 Msa0324220:CDS 25.0%
! TAGTGTTAACAAAATTGAGA+TGG - chr2_4:29542629-29542648 Msa0324220:intron 25.0%
! TAAACTCGGGTAAAATAATA+TGG - chr2_4:29542725-29542744 Msa0324220:intron 25.0%
! AATATATACGAGCTAAAACT+CGG - chr2_4:29542760-29542779 Msa0324220:intron 25.0%
!! TACTTGCTAACAAAGTTATA+GGG + chr2_4:29542913-29542932 None:intergenic 25.0%
!! ATACTTGCTAACAAAGTTAT+AGG + chr2_4:29542914-29542933 None:intergenic 25.0%
! ATATGTTATATATGCACTCA+GGG + chr2_4:29543050-29543069 None:intergenic 25.0%
! TAGTTACTTAACCAAATGAT+TGG - chr2_4:29543150-29543169 Msa0324220:intron 25.0%
! TTCCATCATAAATTAAACTC+GGG + chr2_4:29543223-29543242 None:intergenic 25.0%
!!! TTTTGTTGGTGTTATTCTTA+TGG + chr2_4:29543308-29543327 None:intergenic 25.0%
!!! ATTTTTAGCTGAATATGCTA+CGG + chr2_4:29543613-29543632 None:intergenic 25.0%
! TATTTACCATTGGAGATAAT+AGG + chr2_4:29544201-29544220 None:intergenic 25.0%
!!! AATTTTGAAATTTGATGCCA+AGG + chr2_4:29544798-29544817 None:intergenic 25.0%
!!! ATAATATTCTAAAGCGAACA+CGG - chr2_4:29545493-29545512 Msa0324220:intron 25.0%
!!! TTTGATGTATTTTTTGTCAG+GGG - chr2_4:29545704-29545723 Msa0324220:CDS 25.0%
! AATGCTTTCACAAACAATTA+AGG - chr2_4:29545865-29545884 Msa0324220:CDS 25.0%
! AAACAATGAAAAAGTCTACA+AGG - chr2_4:29545894-29545913 Msa0324220:CDS 25.0%
! TGATGAAATATGTGAAGATT+TGG - chr2_4:29545961-29545980 Msa0324220:CDS 25.0%
! GATGAAATATGTGAAGATTT+GGG - chr2_4:29545962-29545981 Msa0324220:CDS 25.0%
! GAAAGATTGAGATTTCTATT+TGG - chr2_4:29546057-29546076 Msa0324220:CDS 25.0%
CCAATTCTAGACACTATAAT+TGG + chr2_4:29540590-29540609 None:intergenic 30.0%
! CCAATTATAGTGTCTAGAAT+TGG - chr2_4:29540587-29540606 Msa0324220:CDS 30.0%
TAGTGGCTTCAAAAACAATA+GGG + chr2_4:29540670-29540689 None:intergenic 30.0%
TTAGTGGCTTCAAAAACAAT+AGG + chr2_4:29540671-29540690 None:intergenic 30.0%
! TTTGAAGCCACTAATTCAAT+TGG - chr2_4:29540677-29540696 Msa0324220:CDS 30.0%
! TAATCAGTACTCTCTCTTTT+AGG + chr2_4:29540785-29540804 None:intergenic 30.0%
!!! GACAAAGAAGGTTTTGATTT+CGG - chr2_4:29540914-29540933 Msa0324220:intron 30.0%
TTCTGTCCAAACTAATGAAT+CGG - chr2_4:29540991-29541010 Msa0324220:intron 30.0%
AGACATGCATGTGTAAAAAT+TGG - chr2_4:29541318-29541337 Msa0324220:CDS 30.0%
GGGGACAAAAAAAAATTATG+AGG - chr2_4:29541383-29541402 Msa0324220:CDS 30.0%
! ATTTTTGTTCACTACGTTGT+GGG + chr2_4:29541479-29541498 None:intergenic 30.0%
! AATTTTTGTTCACTACGTTG+TGG + chr2_4:29541480-29541499 None:intergenic 30.0%
AAAATCAAACGATTTCTTGG+AGG + chr2_4:29542454-29542473 None:intergenic 30.0%
AGATAGAGAACTAGAAAGAA+AGG - chr2_4:29542661-29542680 Msa0324220:intron 30.0%
AGAAAGGATACACATAAACT+CGG - chr2_4:29542677-29542696 Msa0324220:intron 30.0%
AATTAACTACATCCACAGTT+GGG + chr2_4:29542831-29542850 None:intergenic 30.0%
! ACTTGCTAACAAAGTTATAG+GGG + chr2_4:29542912-29542931 None:intergenic 30.0%
TATGTTATATATGCACTCAG+GGG + chr2_4:29543049-29543068 None:intergenic 30.0%
GATATGTTATATATGCACTC+AGG + chr2_4:29543051-29543070 None:intergenic 30.0%
ATCACTTAAGTCCAATCATT+TGG + chr2_4:29543164-29543183 None:intergenic 30.0%
! AACCCGAGTTTAATTTATGA+TGG - chr2_4:29543218-29543237 Msa0324220:intron 30.0%
! ACGAAACTTTATTTACCTAG+CGG - chr2_4:29543253-29543272 Msa0324220:intron 30.0%
!! GGTGTTATTCTTATGGAAAA+AGG + chr2_4:29543301-29543320 None:intergenic 30.0%
! GGAAGTAGGTAAATTTTTGT+TGG + chr2_4:29543322-29543341 None:intergenic 30.0%
! TTAGGTAAACAAGTTCTAGT+AGG + chr2_4:29543343-29543362 None:intergenic 30.0%
CAAGTATAACTTACTTAGCA+AGG - chr2_4:29543415-29543434 Msa0324220:intron 30.0%
CAAGGTCACTATGATATTAT+GGG - chr2_4:29543433-29543452 Msa0324220:intron 30.0%
CTGAATAAATGAAACTTTCG+AGG + chr2_4:29543479-29543498 None:intergenic 30.0%
CTCGAAAGTTTCATTTATTC+AGG - chr2_4:29543477-29543496 Msa0324220:intron 30.0%
ATTTAGATATTGCGATTGTG+TGG - chr2_4:29543856-29543875 Msa0324220:intron 30.0%
!! TTGCTTCAAACTTGTTATGA+AGG - chr2_4:29544013-29544032 Msa0324220:intron 30.0%
GTTGCATAGAACATGAAAAA+TGG + chr2_4:29544115-29544134 None:intergenic 30.0%
!! CTTTTAAGTAAACCCTGATT+TGG + chr2_4:29544166-29544185 None:intergenic 30.0%
TTGTGAATGATAGAATCATG+AGG + chr2_4:29544326-29544345 None:intergenic 30.0%
ATTGGTTGTAGGAATATCTT+TGG - chr2_4:29544542-29544561 Msa0324220:intron 30.0%
! TAAAGTATTTGACCAATGGT+AGG + chr2_4:29544571-29544590 None:intergenic 30.0%
TGTTTACCCTCTAATATTAG+CGG - chr2_4:29544700-29544719 Msa0324220:CDS 30.0%
CAAAAACCGCTAATATTAGA+GGG + chr2_4:29544709-29544728 None:intergenic 30.0%
TCAAAAACCGCTAATATTAG+AGG + chr2_4:29544710-29544729 None:intergenic 30.0%
CCTGTAATTTGAGCAAATTT+CGG - chr2_4:29544834-29544853 Msa0324220:CDS 30.0%
!! ACTCGAAGATTCTTTGATTT+TGG + chr2_4:29544910-29544929 None:intergenic 30.0%
AATGATATTAAACAGAGACG+TGG - chr2_4:29545083-29545102 Msa0324220:intron 30.0%
ATGATATTAAACAGAGACGT+GGG - chr2_4:29545084-29545103 Msa0324220:intron 30.0%
TTCAATCCATACTTCTCAAA+CGG + chr2_4:29545149-29545168 None:intergenic 30.0%
ATGCAAAATCTTCCTCAAAT+GGG + chr2_4:29545181-29545200 None:intergenic 30.0%
!!! TTTTTTCAATGAGGCTGATA+AGG - chr2_4:29545229-29545248 Msa0324220:intron 30.0%
!! TTTTTCAATGAGGCTGATAA+GGG - chr2_4:29545230-29545249 Msa0324220:intron 30.0%
AATTGTGTTTACCTGTATAG+TGG + chr2_4:29545440-29545459 None:intergenic 30.0%
!! GTGTTCGCTTTAGAATATTA+TGG + chr2_4:29545494-29545513 None:intergenic 30.0%
ATTCTCAACTATGCTTAGAA+AGG + chr2_4:29545672-29545691 None:intergenic 30.0%
TTCACAAACAATTAAGGACA+TGG - chr2_4:29545871-29545890 Msa0324220:CDS 30.0%
! AGTCTACAAGGTTTTACAAA+AGG - chr2_4:29545906-29545925 Msa0324220:CDS 30.0%
AAATATGTGAAGATTTGGGT+TGG - chr2_4:29545966-29545985 Msa0324220:CDS 30.0%
!! GTGTGATAGTTGTTTTGCTA+CGG + chr2_4:29540642-29540661 None:intergenic 35.0%
AACACCACCAATTGAATTAG+TGG + chr2_4:29540687-29540706 None:intergenic 35.0%
!! CTAATTCAATTGGTGGTGTT+TGG - chr2_4:29540687-29540706 Msa0324220:CDS 35.0%
TTTGGAGACATTGTTCCTAT+AGG - chr2_4:29540705-29540724 Msa0324220:CDS 35.0%
CCAAAATTTCAGCATGAGAA+GGG + chr2_4:29540808-29540827 None:intergenic 35.0%
TCCAAAATTTCAGCATGAGA+AGG + chr2_4:29540809-29540828 None:intergenic 35.0%
TGTTATGTTCAACACCAAAG+TGG - chr2_4:29540871-29540890 Msa0324220:CDS 35.0%
AAACTTCATTTCCACCACTT+TGG + chr2_4:29540888-29540907 None:intergenic 35.0%
! TGGTGGAAATGAAGTTTGTT+CGG - chr2_4:29540891-29540910 Msa0324220:CDS 35.0%
CATTGACAACATCAAAATCG+TGG - chr2_4:29541213-29541232 Msa0324220:CDS 35.0%
GTCCATTTCTTATCCTTCTA+CGG + chr2_4:29541411-29541430 None:intergenic 35.0%
AATTCGAATTTGTCTGGTAG+TGG - chr2_4:29541496-29541515 Msa0324220:CDS 35.0%
TTGTCTACTTGATGTTTCAG+CGG - chr2_4:29541697-29541716 Msa0324220:intron 35.0%
!! ACGTGACTTGTTCTAAATTG+CGG - chr2_4:29542013-29542032 Msa0324220:intron 35.0%
AATCACAATGCATACAAGTC+TGG - chr2_4:29542104-29542123 Msa0324220:intron 35.0%
! AATCCTAGTTTAGAGTCGTT+TGG + chr2_4:29542294-29542313 None:intergenic 35.0%
AAGAAGAAGTCTCTTCATAG+TGG + chr2_4:29542422-29542441 None:intergenic 35.0%
ATATACGACACTGACACTTA+TGG - chr2_4:29542568-29542587 Msa0324220:CDS 35.0%
TTAACAAAATTGAGATGGCG+AGG - chr2_4:29542634-29542653 Msa0324220:intron 35.0%
CAATTAACTACATCCACAGT+TGG + chr2_4:29542832-29542851 None:intergenic 35.0%
TTTGAGTGCCCCTAAAAATA+TGG - chr2_4:29542983-29543002 Msa0324220:intron 35.0%
! AACAAGTTCTAGTAGGAAGT+AGG + chr2_4:29543336-29543355 None:intergenic 35.0%
GCAAGGTCACTATGATATTA+TGG - chr2_4:29543432-29543451 Msa0324220:intron 35.0%
GTCACTATGATATTATGGGA+CGG - chr2_4:29543437-29543456 Msa0324220:intron 35.0%
CCTTGATCAACTAGCAAAAT+GGG + chr2_4:29543652-29543671 None:intergenic 35.0%
! CCATTTTGCTAGTTGATCAA+GGG - chr2_4:29543650-29543669 Msa0324220:intron 35.0%
!! GAATGGCTTTACTGTTTTGA+TGG - chr2_4:29543678-29543697 Msa0324220:intron 35.0%
AATACCTAATACCACCTGAA+AGG + chr2_4:29543769-29543788 None:intergenic 35.0%
! TCAGGTGGTATTAGGTATTT+TGG - chr2_4:29543770-29543789 Msa0324220:intron 35.0%
AACCATGCACAATGATCATA+AGG - chr2_4:29544047-29544066 Msa0324220:intron 35.0%
TGATCATAAGGAGTTTGCAT+TGG - chr2_4:29544059-29544078 Msa0324220:intron 35.0%
ATTGGACACTTCCACATTAT+AGG - chr2_4:29544077-29544096 Msa0324220:intron 35.0%
ACTTCCACATTATAGGATGT+GGG - chr2_4:29544084-29544103 Msa0324220:intron 35.0%
TTACCATTGGAGATAATAGG+AGG + chr2_4:29544198-29544217 None:intergenic 35.0%
!!! GATTATTTGGTTTTGGACCT+TGG - chr2_4:29544778-29544797 Msa0324220:CDS 35.0%
! CCGAAATTTGCTCAAATTAC+AGG + chr2_4:29544837-29544856 None:intergenic 35.0%
CAAAATCGATGATATGACAG+GGG + chr2_4:29544865-29544884 None:intergenic 35.0%
GCAAAATCGATGATATGACA+GGG + chr2_4:29544866-29544885 None:intergenic 35.0%
TGCAAAATCGATGATATGAC+AGG + chr2_4:29544867-29544886 None:intergenic 35.0%
TGCACAGTCAAAATTCATGA+AGG - chr2_4:29544883-29544902 Msa0324220:CDS 35.0%
TGTTTATTCCTCGGTATAGT+TGG + chr2_4:29544985-29545004 None:intergenic 35.0%
AAACTTCCGTTTGAGAAGTA+TGG - chr2_4:29545140-29545159 Msa0324220:intron 35.0%
GATGCAAAATCTTCCTCAAA+TGG + chr2_4:29545182-29545201 None:intergenic 35.0%
!!! ACCAGAGAGTTTTTTCAATG+AGG - chr2_4:29545220-29545239 Msa0324220:intron 35.0%
!! TCTTCAAAAGAGCATCAAAG+TGG - chr2_4:29545261-29545280 Msa0324220:intron 35.0%
!!! AAGTGGTGGTTTTGTAATGA+AGG - chr2_4:29545278-29545297 Msa0324220:intron 35.0%
TATTCCAACAAGCTACAGAA+AGG + chr2_4:29545401-29545420 None:intergenic 35.0%
TACAAGCAATCATGTCATCA+GGG - chr2_4:29545535-29545554 Msa0324220:intron 35.0%
ATCTGACTATCTGATCTCAA+TGG - chr2_4:29545577-29545596 Msa0324220:intron 35.0%
!!! GAAAGCATTTTCTCAGCATT+TGG + chr2_4:29545854-29545873 None:intergenic 35.0%
TAGGGCTGTAGTGAAAGAAT+TGG + chr2_4:29540547-29540566 None:intergenic 40.0%
ATTCTTTCACTACAGCCCTA+TGG - chr2_4:29540547-29540566 Msa0324220:three_prime_UTR 40.0%
AATTGGTAAGTTGCCTTGAG+TGG + chr2_4:29540573-29540592 None:intergenic 40.0%
! GTGTCTAGAATTGGCATCAT+AGG - chr2_4:29540596-29540615 Msa0324220:CDS 40.0%
GAAGCCACTAATTCAATTGG+TGG - chr2_4:29540680-29540699 Msa0324220:CDS 40.0%
CTGAAGCTTAGTACACCTAT+AGG + chr2_4:29540723-29540742 None:intergenic 40.0%
CTAAGCTTCAGTCACAAACA+TGG - chr2_4:29540732-29540751 Msa0324220:CDS 40.0%
! CCCTTCTCATGCTGAAATTT+TGG - chr2_4:29540805-29540824 Msa0324220:CDS 40.0%
TATGTTCAACACCAAAGTGG+TGG - chr2_4:29540874-29540893 Msa0324220:CDS 40.0%
! GGTGGAAATGAAGTTTGTTC+GGG - chr2_4:29540892-29540911 Msa0324220:CDS 40.0%
! AAGTTTGTTCGGGACAAAGA+AGG - chr2_4:29540902-29540921 Msa0324220:CDS 40.0%
! AGTGGATTTCCATGGTCATT+GGG + chr2_4:29540947-29540966 None:intergenic 40.0%
! AAGTGGATTTCCATGGTCAT+TGG + chr2_4:29540948-29540967 None:intergenic 40.0%
TTGCGTCCGATTCATTAGTT+TGG + chr2_4:29541000-29541019 None:intergenic 40.0%
TAATGAATCGGACGCAATTC+AGG - chr2_4:29541003-29541022 Msa0324220:intron 40.0%
GTTTAATTGTGGTCACGTCA+AGG + chr2_4:29541160-29541179 None:intergenic 40.0%
!! AAATTATGAGGTGCCGTAGA+AGG - chr2_4:29541395-29541414 Msa0324220:CDS 40.0%
TGCCGTAGAAGGATAAGAAA+TGG - chr2_4:29541406-29541425 Msa0324220:CDS 40.0%
GAAAATCGAGTCTGACAGAA+TGG - chr2_4:29541445-29541464 Msa0324220:CDS 40.0%
AAACCACTACAAACTCGAAG+TGG + chr2_4:29541725-29541744 None:intergenic 40.0%
! GTGGTTTGCACTGGAAAATA+TGG - chr2_4:29541738-29541757 Msa0324220:intron 40.0%
AGCTACTAGTGACCTTGTTA+AGG - chr2_4:29541860-29541879 Msa0324220:intron 40.0%
GCTACTAGTGACCTTGTTAA+GGG - chr2_4:29541861-29541880 Msa0324220:intron 40.0%
TGACCTTGTTAAGGGAAAGA+AGG - chr2_4:29541869-29541888 Msa0324220:intron 40.0%
CAACCTTCTTTCCCTTAACA+AGG + chr2_4:29541875-29541894 None:intergenic 40.0%
TGTTAAGGGAAAGAAGGTTG+TGG - chr2_4:29541875-29541894 Msa0324220:intron 40.0%
ATCAGCTATTGATCTAGCCA+TGG - chr2_4:29541914-29541933 Msa0324220:intron 40.0%
CCGAGACATCCAAATTCAAA+GGG + chr2_4:29542130-29542149 None:intergenic 40.0%
CCCTTTGAATTTGGATGTCT+CGG - chr2_4:29542127-29542146 Msa0324220:intron 40.0%
TCCGAGACATCCAAATTCAA+AGG + chr2_4:29542131-29542150 None:intergenic 40.0%
GTGCAAAAAGAATACGAGTG+TGG - chr2_4:29542252-29542271 Msa0324220:intron 40.0%
GAACCAAACGACTCTAAACT+AGG - chr2_4:29542288-29542307 Msa0324220:intron 40.0%
GTACTACACAATAGCACACA+TGG - chr2_4:29542368-29542387 Msa0324220:intron 40.0%
ATCAAACGATTTCTTGGAGG+AGG + chr2_4:29542451-29542470 None:intergenic 40.0%
! GACACTGACACTTATGGTTT+TGG - chr2_4:29542574-29542593 Msa0324220:CDS 40.0%
!!! CTAATTTTAGAGCCCAACTG+TGG - chr2_4:29542816-29542835 Msa0324220:intron 40.0%
!!! CCAGTGCACCATATTTTTAG+GGG + chr2_4:29542994-29543013 None:intergenic 40.0%
!! CCCAGTGCACCATATTTTTA+GGG + chr2_4:29542995-29543014 None:intergenic 40.0%
CCCTAAAAATATGGTGCACT+GGG - chr2_4:29542992-29543011 Msa0324220:intron 40.0%
TAAGATGAAGTTTGACCGCT+AGG + chr2_4:29543271-29543290 None:intergenic 40.0%
TGATCAACTAGCAAAATGGG+TGG + chr2_4:29543649-29543668 None:intergenic 40.0%
! CCCATTTTGCTAGTTGATCA+AGG - chr2_4:29543649-29543668 Msa0324220:intron 40.0%
CCCTTGATCAACTAGCAAAA+TGG + chr2_4:29543653-29543672 None:intergenic 40.0%
AAATAAGCTGCATGCCTTTC+AGG - chr2_4:29543752-29543771 Msa0324220:intron 40.0%
!! ACTTGTTATGAAGGACCAGA+AGG - chr2_4:29544022-29544041 Msa0324220:intron 40.0%
! CTTGTTATGAAGGACCAGAA+GGG - chr2_4:29544023-29544042 Msa0324220:intron 40.0%
CTCCTTATGATCATTGTGCA+TGG + chr2_4:29544052-29544071 None:intergenic 40.0%
CACTTCCACATTATAGGATG+TGG - chr2_4:29544083-29544102 Msa0324220:intron 40.0%
CTTCCACATTATAGGATGTG+GGG - chr2_4:29544085-29544104 Msa0324220:intron 40.0%
!! GTAAACCCTGATTTGGTGTT+TGG + chr2_4:29544159-29544178 None:intergenic 40.0%
ATGCCTCCTATTATCTCCAA+TGG - chr2_4:29544192-29544211 Msa0324220:intron 40.0%
TTGGGTATATGTCCTCATGT+CGG + chr2_4:29544508-29544527 None:intergenic 40.0%
ATATACCCAACCGACACAAA+TGG - chr2_4:29544518-29544537 Msa0324220:intron 40.0%
TATACCCAACCGACACAAAT+GGG - chr2_4:29544519-29544538 Msa0324220:intron 40.0%
ACAACCAATCCCATTTGTGT+CGG + chr2_4:29544531-29544550 None:intergenic 40.0%
!! ACACAAATGGGATTGGTTGT+AGG - chr2_4:29544531-29544550 Msa0324220:intron 40.0%
TATCTTTGGATGCCTACCAT+TGG - chr2_4:29544556-29544575 Msa0324220:intron 40.0%
TTATTCCTCGGTATAGTTGG+TGG + chr2_4:29544982-29545001 None:intergenic 40.0%
GCCTCATTGAAAAAACTCTC+TGG + chr2_4:29545224-29545243 None:intergenic 40.0%
!! TCAAAAGAGCATCAAAGTGG+TGG - chr2_4:29545264-29545283 Msa0324220:intron 40.0%
TCCTTGCAACTGGTTATGAT+GGG - chr2_4:29545345-29545364 Msa0324220:intron 40.0%
TGTTTACCTGTATAGTGGCA+TGG + chr2_4:29545435-29545454 None:intergenic 40.0%
CTACAAGCAATCATGTCATC+AGG - chr2_4:29545534-29545553 Msa0324220:intron 40.0%
ATTCCAAACATGGCCTTTGT+GGG - chr2_4:29545743-29545762 Msa0324220:CDS 40.0%
ACTCTCAACATAACCCACAA+AGG + chr2_4:29545759-29545778 None:intergenic 40.0%
AGGAACTGCATCACAACATT+TGG - chr2_4:29545926-29545945 Msa0324220:CDS 40.0%
!! AAGATTTGGGTTGGCATACT+TGG - chr2_4:29545975-29545994 Msa0324220:CDS 40.0%
TTATAGTCACCAGCAGTGTA+AGG + chr2_4:29546034-29546053 None:intergenic 40.0%
AGAATTGGCATCATAGGTGC+TGG - chr2_4:29540602-29540621 Msa0324220:CDS 45.0%
! GTACTCTCTCTTTTAGGCCA+TGG + chr2_4:29540779-29540798 None:intergenic 45.0%
! CTGTCAGACTCGATTTTCGT+TGG + chr2_4:29541443-29541462 None:intergenic 45.0%
! GTACCACTTCGAGTTTGTAG+TGG - chr2_4:29541719-29541738 Msa0324220:intron 45.0%
! GAGTTTGTAGTGGTTTGCAC+TGG - chr2_4:29541729-29541748 Msa0324220:intron 45.0%
CATGGAAATGTCGGCATCAA+TGG + chr2_4:29541771-29541790 None:intergenic 45.0%
CCCTTGTTGCATGGAAATGT+CGG + chr2_4:29541780-29541799 None:intergenic 45.0%
CCGACATTTCCATGCAACAA+GGG - chr2_4:29541777-29541796 Msa0324220:intron 45.0%
GGAAAGAAGGTTGTGGTTGT+GGG - chr2_4:29541882-29541901 Msa0324220:intron 45.0%
ATTTGCCTGTGCACATTCCA+TGG + chr2_4:29541934-29541953 None:intergenic 45.0%
GAATGTGCACAGGCAAATCA+AGG - chr2_4:29541936-29541955 Msa0324220:intron 45.0%
CAAGTCTGGCCCTTTGAATT+TGG - chr2_4:29542118-29542137 Msa0324220:intron 45.0%
AAACGATTTCTTGGAGGAGG+AGG + chr2_4:29542448-29542467 None:intergenic 45.0%
CCCCTAAAAATATGGTGCAC+TGG - chr2_4:29542991-29543010 Msa0324220:intron 45.0%
! GCCCAGTGCACCATATTTTT+AGG + chr2_4:29542996-29543015 None:intergenic 45.0%
TAGCTGAATATGCTACGGCT+CGG + chr2_4:29543608-29543627 None:intergenic 45.0%
GTTGATCAAGGGAGCAAGAA+TGG - chr2_4:29543661-29543680 Msa0324220:intron 45.0%
! CATGCCTTTCAGGTGGTATT+AGG - chr2_4:29543762-29543781 Msa0324220:intron 45.0%
ACTCCCCACATCCTATAATG+TGG + chr2_4:29544091-29544110 None:intergenic 45.0%
CTCCACCAAACACCAAATCA+GGG - chr2_4:29544151-29544170 Msa0324220:intron 45.0%
!! AACCCTGATTTGGTGTTTGG+TGG + chr2_4:29544156-29544175 None:intergenic 45.0%
! AGGCTGAATCGTCTCTGAAA+TGG + chr2_4:29544437-29544456 None:intergenic 45.0%
GTATATGTCCTCATGTCGGT+AGG + chr2_4:29544504-29544523 None:intergenic 45.0%
!! CAATCCCATTTGTGTCGGTT+GGG + chr2_4:29544526-29544545 None:intergenic 45.0%
!! TCGGTATAGTTGGTGGTTTC+TGG + chr2_4:29544975-29544994 None:intergenic 45.0%
AGAAACCACCAACTATACCG+AGG - chr2_4:29544974-29544993 Msa0324220:intron 45.0%
! TCATAGAGTCCTACTTGCTG+TGG - chr2_4:29545117-29545136 Msa0324220:intron 45.0%
GAAACCAGAACACCCATTTG+AGG - chr2_4:29545166-29545185 Msa0324220:intron 45.0%
TCTTCCTCAAATGGGTGTTC+TGG + chr2_4:29545173-29545192 None:intergenic 45.0%
GATGTTGTTCTCCTTGCAAC+TGG - chr2_4:29545335-29545354 Msa0324220:intron 45.0%
CTCCTTGCAACTGGTTATGA+TGG - chr2_4:29545344-29545363 Msa0324220:intron 45.0%
TCCCATCATAACCAGTTGCA+AGG + chr2_4:29545349-29545368 None:intergenic 45.0%
AACAAGCTACAGAAAGGCTC+AGG + chr2_4:29545395-29545414 None:intergenic 45.0%
! TGAGCCTTTCTGTAGCTTGT+TGG - chr2_4:29545394-29545413 Msa0324220:intron 45.0%
!! AGCTTGTTGGAATACCCTAC+TGG - chr2_4:29545407-29545426 Msa0324220:intron 45.0%
ATAGTGGCATGGTACCAGTA+GGG + chr2_4:29545424-29545443 None:intergenic 45.0%
TATAGTGGCATGGTACCAGT+AGG + chr2_4:29545425-29545444 None:intergenic 45.0%
GATCTCCTTCGCTACATGAT+TGG - chr2_4:29545608-29545627 Msa0324220:intron 45.0%
TGCAACCAATCATGTAGCGA+AGG + chr2_4:29545616-29545635 None:intergenic 45.0%
ACTATGCTTAGAAAGGAGCG+CGG + chr2_4:29545665-29545684 None:intergenic 45.0%
! GTTTGGAATCGATGGATGGA+CGG + chr2_4:29545732-29545751 None:intergenic 45.0%
! CCATGTTTGGAATCGATGGA+TGG + chr2_4:29545736-29545755 None:intergenic 45.0%
!! CCATCCATCGATTCCAAACA+TGG - chr2_4:29545733-29545752 Msa0324220:CDS 45.0%
! AAGGCCATGTTTGGAATCGA+TGG + chr2_4:29545740-29545759 None:intergenic 45.0%
GATTCCAAACATGGCCTTTG+TGG - chr2_4:29545742-29545761 Msa0324220:CDS 45.0%
TAACCCACAAAGGCCATGTT+TGG + chr2_4:29545749-29545768 None:intergenic 45.0%
AAGCCACATGGAACGTATCT+CGG + chr2_4:29545801-29545820 None:intergenic 45.0%
TAATAGACCAGCAAGCCACA+TGG + chr2_4:29545813-29545832 None:intergenic 45.0%
!! ATTTGGGTTGGCATACTTGG+AGG - chr2_4:29545978-29545997 Msa0324220:CDS 45.0%
GCATTTACTCCTTACACTGC+TGG - chr2_4:29546022-29546041 Msa0324220:CDS 45.0%
!!! TTTGTTAATTTTTTTTTATA+GGG + chr2_4:29542172-29542191 None:intergenic 5.0%
!!! TTTTGTTAATTTTTTTTTAT+AGG + chr2_4:29542173-29542192 None:intergenic 5.0%
!! TTTATATATAAGTAAAATTA+AGG - chr2_4:29544668-29544687 Msa0324220:intron 5.0%
!! TTATATATAAGTAAAATTAA+GGG - chr2_4:29544669-29544688 Msa0324220:intron 5.0%
!!! TAGAAAATTAATTAATTTTA+GGG + chr2_4:29545016-29545035 None:intergenic 5.0%
AGTTGCCTTGAGTGGCCATA+GGG + chr2_4:29540565-29540584 None:intergenic 50.0%
AAGTTGCCTTGAGTGGCCAT+AGG + chr2_4:29540566-29540585 None:intergenic 50.0%
!! ATCATAGGTGCTGGAGTGAG+TGG - chr2_4:29540611-29540630 Msa0324220:CDS 50.0%
GACCATGGAAATCCACTTCC+TGG - chr2_4:29540950-29540969 Msa0324220:intron 50.0%
! GACCAGGAAGTGGATTTCCA+TGG + chr2_4:29540955-29540974 None:intergenic 50.0%
GCCGACATTTCCATGCAACA+AGG - chr2_4:29541776-29541795 Msa0324220:intron 50.0%
CCTTACCCTTGAACACCTCA+GGG + chr2_4:29541803-29541822 None:intergenic 50.0%
ACCTTACCCTTGAACACCTC+AGG + chr2_4:29541804-29541823 None:intergenic 50.0%
GGGAAAGAAGGTTGTGGTTG+TGG - chr2_4:29541881-29541900 Msa0324220:intron 50.0%
TCTAGCCATGGAATGTGCAC+AGG - chr2_4:29541926-29541945 Msa0324220:intron 50.0%
TAAGCTGCATGCCTTTCAGG+TGG - chr2_4:29543755-29543774 Msa0324220:intron 50.0%
ATTGTGCATGGTTGCCCTTC+TGG + chr2_4:29544040-29544059 None:intergenic 50.0%
! TGTTTGGTGGAGGAACTGTG+CGG + chr2_4:29544143-29544162 None:intergenic 50.0%
!! CCTGATTTGGTGTTTGGTGG+AGG + chr2_4:29544153-29544172 None:intergenic 50.0%
CCTCCACCAAACACCAAATC+AGG - chr2_4:29544150-29544169 Msa0324220:intron 50.0%
GATATCCTCCTACCGACATG+AGG - chr2_4:29544493-29544512 Msa0324220:intron 50.0%
TATGTCCTCATGTCGGTAGG+AGG + chr2_4:29544501-29544520 None:intergenic 50.0%
! CCAATCCCATTTGTGTCGGT+TGG + chr2_4:29544527-29544546 None:intergenic 50.0%
CCAACCGACACAAATGGGAT+TGG - chr2_4:29544524-29544543 Msa0324220:intron 50.0%
CGGAAGTTTCCACAGCAAGT+AGG + chr2_4:29545129-29545148 None:intergenic 50.0%
CTGGTACCATGCCACTATAC+AGG - chr2_4:29545426-29545445 Msa0324220:intron 50.0%
CATCCGAGATACGTTCCATG+TGG - chr2_4:29545795-29545814 Msa0324220:CDS 50.0%
! ATACGTTCCATGTGGCTTGC+TGG - chr2_4:29545803-29545822 Msa0324220:CDS 50.0%
TACAGCCCTATGGCCACTCA+AGG - chr2_4:29540557-29540576 Msa0324220:three_prime_UTR 55.0%
GGACGTCTACCCAATGACCA+TGG - chr2_4:29540935-29540954 Msa0324220:intron 55.0%
ACTTCCTGGTCGTCCTGTGT+GGG - chr2_4:29540964-29540983 Msa0324220:intron 55.0%
TGGACAGAAAGCTCCCACAC+AGG + chr2_4:29540980-29540999 None:intergenic 55.0%
! AAGGGCCCTGAGGTGTTCAA+GGG - chr2_4:29541795-29541814 Msa0324220:intron 55.0%
! CCCTGAGGTGTTCAAGGGTA+AGG - chr2_4:29541800-29541819 Msa0324220:intron 55.0%
TCAGGGGTGACCTTGAGCAT+GGG + chr2_4:29543033-29543052 None:intergenic 55.0%
CACACAGGACGACCAGGAAG+TGG + chr2_4:29540965-29540984 None:intergenic 60.0%
CACTTCCTGGTCGTCCTGTG+TGG - chr2_4:29540963-29540982 Msa0324220:intron 60.0%
TCCATGCAACAAGGGCCCTG+AGG - chr2_4:29541785-29541804 Msa0324220:intron 60.0%
ACCTCAGGGCCCTTGTTGCA+TGG + chr2_4:29541789-29541808 None:intergenic 60.0%
! CAAGGGCCCTGAGGTGTTCA+AGG - chr2_4:29541794-29541813 Msa0324220:intron 60.0%
ACCTTGAGCATGGGCCGAAG+GGG + chr2_4:29543024-29543043 None:intergenic 60.0%
GACCTTGAGCATGGGCCGAA+GGG + chr2_4:29543025-29543044 None:intergenic 60.0%
TGACCTTGAGCATGGGCCGA+AGG + chr2_4:29543026-29543045 None:intergenic 60.0%
CTCAGGGGTGACCTTGAGCA+TGG + chr2_4:29543034-29543053 None:intergenic 60.0%
AGCTCCCACACAGGACGACC+AGG + chr2_4:29540971-29540990 None:intergenic 65.0%
TTGAGCATGGGCCGAAGGGG+CGG + chr2_4:29543021-29543040 None:intergenic 65.0%
GCCCCTTCGGCCCATGCTCA+AGG - chr2_4:29543020-29543039 Msa0324220:intron 70.0%
GCACTGGGCTGCCGCCCCTT+CGG - chr2_4:29543007-29543026 Msa0324220:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 29540521 29546130 29540521 ID=Msa0324220;Name=Msa0324220
chr2_4 mRNA 29540521 29546130 29540521 ID=Msa0324220-mRNA-1;Parent=Msa0324220;Name=Msa0324220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=45|1|1|1|1|1|5|64|523
chr2_4 exon 29540521 29540927 29540521 ID=Msa0324220-mRNA-1:exon:9996;Parent=Msa0324220-mRNA-1
chr2_4 exon 29541204 29541553 29541204 ID=Msa0324220-mRNA-1:exon:9995;Parent=Msa0324220-mRNA-1
chr2_4 exon 29542438 29542616 29542438 ID=Msa0324220-mRNA-1:exon:9994;Parent=Msa0324220-mRNA-1
chr2_4 exon 29544694 29544934 29544694 ID=Msa0324220-mRNA-1:exon:9993;Parent=Msa0324220-mRNA-1
chr2_4 exon 29545627 29546130 29545627 ID=Msa0324220-mRNA-1:exon:9992;Parent=Msa0324220-mRNA-1
chr2_4 five_prime_UTR 29546086 29546130 29546086 ID=Msa0324220-mRNA-1:five_prime_utr;Parent=Msa0324220-mRNA-1
chr2_4 CDS 29545627 29546085 29545627 ID=Msa0324220-mRNA-1:cds;Parent=Msa0324220-mRNA-1
chr2_4 CDS 29544694 29544934 29544694 ID=Msa0324220-mRNA-1:cds;Parent=Msa0324220-mRNA-1
chr2_4 CDS 29542438 29542616 29542438 ID=Msa0324220-mRNA-1:cds;Parent=Msa0324220-mRNA-1
chr2_4 CDS 29541204 29541553 29541204 ID=Msa0324220-mRNA-1:cds;Parent=Msa0324220-mRNA-1
chr2_4 CDS 29540585 29540927 29540585 ID=Msa0324220-mRNA-1:cds;Parent=Msa0324220-mRNA-1
chr2_4 three_prime_UTR 29540521 29540584 29540521 ID=Msa0324220-mRNA-1:three_prime_utr;Parent=Msa0324220-mRNA-1
Gene Sequence

>Msa0324220

ATGGCCACTCAAGGCAACTTACCAATTATAGTGTCTAGAATTGGCATCATAGGTGCTGGAGTGAGTGGTTTAGCCGTAGCAAAACAACTATCACACTACAACCCTATTGTTTTTGAAGCCACTAATTCAATTGGTGGTGTTTGGAGACATTGTTCCTATAGGTGTACTAAGCTTCAGTCACAAACATGGAATTATGAATTTAGTGATTTTCCATGGCCTAAAAGAGAGAGTACTGATTACCCTTCTCATGCTGAAATTTTGGAATACTTGCATATTTATGCTGTTCAATTTGATTTGTTCAAGTATGTTATGTTCAACACCAAAGTGGTGGAAATGAAGTTTGTTCGGGACAAAGAAGGTTTTGATTTCGGACGTCTACCCAATGACCATGGAAATCCACTTCCTGGTCGTCCTGTGTGGGAGCTTTCTGTCCAAACTAATGAATCGGACGCAATTCAGCGGTACCACTTCGAGTTTGTAGTGGTTTGCACTGGAAAATATGGTGACATACCATTGATGCCGACATTTCCATGCAACAAGGGCCCTGAGGTGTTCAAGGGTAAGGTTTTGCATACCATTGATTATTGTAAACTTGATAAAGAAGCTACTAGTGACCTTGTTAAGGGAAAGAAGGTTGTGGTTGTGGGTTACAAAAAATCAGCTATTGATCTAGCCATGGAATGTGCACAGGCAAATCAAGGACCAGAAGGGCAACCATGCACAATGATCATAAGGAGTTTGCATTGGACACTTCCACATTATAGGATGTGGGGAGTACCATTTTTCATGTTCTATGCAACAAGATCCGCACAGTTCCTCCACCAAACACCAAATCAGGGTTTACTTAAAAGTCTTTTATGCCTCCTATTATCTCCAATGAGACGTGGGATTTCAAAGTTCATAGAGTCCTACTTGCTGTGGAAACTTCCGTTTGAGAAGTATGGATTGAAACCAGAACACCCATTTGAGGAAGATTTTGCATCTTGTCAAATAGCTATAACACCAGAGAGTTTTTTCAATGAGGCTGATAAGGGAAAAATAATCTTCAAAAGAGCATCAAAGTGGTGGTTTTGTAATGAAGGAATTGAATTTGATGACAACACTAAAATTGATGCTGATGTTGTTCTCCTTGCAACTGGTTATGATGGGAAAAAGAAGCTCAAAACACTTTTGCCTGAGCCTTTCTGTAGCTTGTTGGAATACCCTACTGGTACCATGCCACTATACAGGGGAACCGTCCATCCATCGATTCCAAACATGGCCTTTGTGGGTTATGTTGAGAGTGTTTCAAATCTTTACACATCCGAGATACGTTCCATGTGGCTTGCTGGTCTATTAGATAACAAATTTAAGCTTCCAAATGCTGAGAAAATGCTTTCACAAACAATTAAGGACATGGAAACAATGAAAAAGTCTACAAGGTTTTACAAAAGGAACTGCATCACAACATTTGGTATCAATCATAATGATGAAATATGTGAAGATTTGGGTTGGCATACTTGGAGGAAGAAGAACTTCATCAAAGAAGCATTTACTCCTTACACTGCTGGTGACTATAAGAAGAAAGATTGA

Protein sequence

>Msa0324220

MATQGNLPIIVSRIGIIGAGVSGLAVAKQLSHYNPIVFEATNSIGGVWRHCSYRCTKLQSQTWNYEFSDFPWPKRESTDYPSHAEILEYLHIYAVQFDLFKYVMFNTKVVEMKFVRDKEGFDFGRLPNDHGNPLPGRPVWELSVQTNESDAIQRYHFEFVVVCTGKYGDIPLMPTFPCNKGPEVFKGKVLHTIDYCKLDKEATSDLVKGKKVVVVGYKKSAIDLAMECAQANQGPEGQPCTMIIRSLHWTLPHYRMWGVPFFMFYATRSAQFLHQTPNQGLLKSLLCLLLSPMRRGISKFIESYLLWKLPFEKYGLKPEHPFEEDFASCQIAITPESFFNEADKGKIIFKRASKWWFCNEGIEFDDNTKIDADVVLLATGYDGKKKLKTLLPEPFCSLLEYPTGTMPLYRGTVHPSIPNMAFVGYVESVSNLYTSEIRSMWLAGLLDNKFKLPNAEKMLSQTIKDMETMKKSTRFYKRNCITTFGINHNDEICEDLGWHTWRKKNFIKEAFTPYTAGDYKKKD*