AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0218060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0218060 MtrunA17_Chr2g0320031 94.357 319 18 0 24 342 1 319 0.0 621
Msa0218060 MtrunA17_Chr2g0320061 84.013 319 50 1 24 342 1 318 0.0 548
Msa0218060 MtrunA17_Chr2g0320051 82.759 319 54 1 24 342 1 318 0.0 541
Msa0218060 MtrunA17_Chr2g0320101 79.310 319 64 2 24 342 1 317 0.0 514
Msa0218060 MtrunA17_Chr2g0320071 78.997 319 65 2 24 342 1 317 0.0 513
Msa0218060 MtrunA17_Chr2g0320091 74.688 320 78 3 24 342 1 318 2.92e-169 473
Msa0218060 MtrunA17_Chr3g0129051 62.418 306 112 3 39 342 18 322 6.49e-133 381
Msa0218060 MtrunA17_Chr3g0129061 63.725 306 108 3 39 342 18 322 1.76e-131 378
Msa0218060 MtrunA17_Chr3g0129041 63.107 309 111 2 36 342 15 322 2.78e-130 375
Msa0218060 MtrunA17_Chr7g0244461 55.380 316 137 2 27 342 1 312 2.57e-128 369
Msa0218060 MtrunA17_Chr5g0438021 57.460 315 131 3 30 342 12 325 1.44e-126 365
Msa0218060 MtrunA17_Chr7g0244451 57.860 299 125 1 44 342 19 316 4.59e-124 358
Msa0218060 MtrunA17_Chr3g0106921 54.603 315 138 4 31 342 8 320 1.45e-121 352
Msa0218060 MtrunA17_Chr3g0114451 54.545 319 144 1 24 342 1 318 8.57e-118 343
Msa0218060 MtrunA17_Chr4g0013171 55.238 315 137 4 30 342 9 321 8.77e-117 340
Msa0218060 MtrunA17_Chr4g0043391 53.459 318 144 2 29 342 7 324 1.13e-115 338
Msa0218060 MtrunA17_Chr4g0038171 54.808 312 136 3 36 342 10 321 2.90e-114 334
Msa0218060 MtrunA17_Chr1g0213061 52.997 317 146 2 28 342 6 321 5.15e-114 333
Msa0218060 MtrunA17_Chr4g0038161 54.259 317 139 4 31 342 5 320 1.53e-112 330
Msa0218060 MtrunA17_Chr5g0432351 53.165 316 143 4 31 342 7 321 2.22e-111 327
Msa0218060 MtrunA17_Chr3g0106901 56.566 297 128 1 46 342 28 323 2.85e-111 327
Msa0218060 MtrunA17_Chr4g0013181 55.973 293 126 3 52 342 62 353 3.26e-111 327
Msa0218060 MtrunA17_Chr5g0404721 52.159 301 137 1 49 342 30 330 5.27e-111 326
Msa0218060 MtrunA17_Chr4g0038151 52.500 320 144 4 27 342 6 321 6.81e-111 325
Msa0218060 MtrunA17_Chr5g0432341 53.797 316 141 4 31 342 7 321 9.56e-111 325
Msa0218060 MtrunA17_Chr5g0432441 55.333 300 129 3 47 342 28 326 3.78e-110 324
Msa0218060 MtrunA17_Chr4g0013201 53.041 296 138 1 47 342 44 338 5.36e-109 321
Msa0218060 MtrunA17_Chr5g0432331 52.121 330 150 6 18 342 26 352 1.14e-108 321
Msa0218060 MtrunA17_Chr7g0224371 49.527 317 157 3 27 342 8 322 8.25e-107 315
Msa0218060 MtrunA17_Chr8g0372601 49.508 305 147 1 45 342 26 330 7.71e-106 313
Msa0218060 MtrunA17_Chr3g0107881 49.367 316 155 4 31 342 10 324 4.93e-104 308
Msa0218060 MtrunA17_Chr4g0013191 51.667 300 141 3 46 342 42 340 5.26e-104 308
Msa0218060 MtrunA17_Chr5g0402581 49.394 330 146 6 21 342 10 326 9.21e-103 305
Msa0218060 MtrunA17_Chr1g0175561 47.771 314 155 3 38 342 13 326 7.80e-101 300
Msa0218060 MtrunA17_Chr5g0402571 48.193 332 151 6 19 342 8 326 3.86e-100 298
Msa0218060 MtrunA17_Chr2g0292211 47.840 324 156 3 32 342 18 341 6.82e-100 299
Msa0218060 MtrunA17_Chr7g0258811 46.130 323 165 3 29 342 49 371 1.24e-99 298
Msa0218060 MtrunA17_Chr2g0292251 50.164 305 144 2 46 342 25 329 1.99e-99 297
Msa0218060 MtrunA17_Chr2g0299691 45.055 364 172 5 1 342 1 358 3.10e-99 297
Msa0218060 MtrunA17_Chr4g0070951 46.802 344 151 6 13 342 4 329 8.75e-99 295
Msa0218060 MtrunA17_Chr1g0155611 50.662 302 141 2 49 342 46 347 6.99e-98 293
Msa0218060 MtrunA17_Chr2g0292151 50.327 306 142 3 46 342 26 330 2.98e-97 292
Msa0218060 MtrunA17_Chr2g0292181 49.180 305 147 2 46 342 35 339 1.01e-95 288
Msa0218060 MtrunA17_Chr2g0292241 48.852 305 148 2 46 342 26 330 3.86e-95 286
Msa0218060 MtrunA17_Chr2g0292271 47.541 305 152 2 46 342 26 330 3.08e-94 284
Msa0218060 MtrunA17_Chr4g0068621 45.485 299 158 1 49 342 38 336 1.25e-91 277
Msa0218060 MtrunA17_Chr2g0291751 45.427 328 164 3 23 342 10 330 6.10e-91 276
Msa0218060 MtrunA17_Chr2g0292111 47.712 306 150 3 46 342 26 330 7.58e-91 275
Msa0218060 MtrunA17_Chr2g0292091 45.395 304 158 2 47 342 22 325 4.30e-89 271
Msa0218060 MtrunA17_Chr2g0292291 46.405 306 155 3 46 342 27 332 7.07e-89 270
Msa0218060 MtrunA17_Chr5g0400331 46.078 306 153 2 49 342 26 331 2.15e-88 268
Msa0218060 MtrunA17_Chr2g0292261 46.230 305 156 2 46 342 26 330 6.32e-88 268
Msa0218060 MtrunA17_Chr5g0432401 45.886 316 125 7 30 341 12 285 1.62e-86 262
Msa0218060 MtrunA17_Chr4g0013721 45.395 304 155 4 46 342 97 396 2.51e-86 266
Msa0218060 MtrunA17_Chr2g0292101 44.737 304 160 2 47 342 23 326 1.08e-84 259
Msa0218060 MtrunA17_Chr3g0128061 41.639 305 169 3 46 342 23 326 8.11e-81 249
Msa0218060 MtrunA17_Chr5g0421411 45.552 281 142 5 73 342 5 285 1.97e-80 246
Msa0218060 MtrunA17_Chr4g0013821 41.528 301 165 4 49 342 28 324 1.52e-79 246
Msa0218060 MtrunA17_Chr8g0371381 41.528 301 162 5 49 342 26 319 2.37e-75 234
Msa0218060 MtrunA17_Chr6g0477071 36.842 323 192 8 24 342 28 342 4.38e-75 235
Msa0218060 MtrunA17_Chr4g0024121 38.750 320 186 4 31 342 9 326 6.65e-74 231
Msa0218060 MtrunA17_Chr2g0322861 40.312 320 179 6 31 342 71 386 1.08e-73 233
Msa0218060 MtrunA17_Chr5g0405991 39.264 326 178 7 24 342 4 316 1.19e-73 230
Msa0218060 MtrunA17_Chr2g0279041 39.210 329 183 6 25 342 3 325 2.09e-73 230
Msa0218060 MtrunA17_Chr1g0204011 38.272 324 183 6 26 342 9 322 4.26e-73 229
Msa0218060 MtrunA17_Chr1g0157051 39.264 326 181 8 24 341 1 317 8.02e-72 226
Msa0218060 MtrunA17_Chr6g0467161 42.953 298 160 7 49 342 45 336 1.65e-71 225
Msa0218060 MtrunA17_Chr1g0148021 38.369 331 189 4 21 342 4 328 2.79e-71 224
Msa0218060 MtrunA17_Chr4g0063671 39.264 326 179 7 30 342 1 320 4.74e-71 224
Msa0218060 MtrunA17_Chr4g0053871 40.752 319 183 4 28 341 6 323 8.69e-71 223
Msa0218060 MtrunA17_Chr7g0268501 39.697 330 179 6 20 342 4 320 1.60e-70 222
Msa0218060 MtrunA17_Chr7g0268521 39.697 330 179 6 20 342 4 320 1.60e-70 222
Msa0218060 MtrunA17_Chr7g0254201 38.361 305 169 5 47 342 18 312 2.39e-69 219
Msa0218060 MtrunA17_Chr1g0194151 39.275 331 182 7 24 342 10 333 4.60e-69 219
Msa0218060 MtrunA17_Chr6g0460711 38.438 320 186 6 28 342 1 314 1.20e-68 218
Msa0218060 MtrunA17_Chr4g0046131 39.067 343 193 8 10 338 2 342 1.39e-68 218
Msa0218060 MtrunA17_Chr7g0225221 37.618 319 193 4 28 342 4 320 2.93e-68 216
Msa0218060 MtrunA17_Chr7g0254231 39.731 297 173 5 47 342 20 311 1.18e-67 214
Msa0218060 MtrunA17_Chr1g0194271 38.757 338 181 7 24 342 10 340 1.46e-67 215
Msa0218060 MtrunA17_Chr1g0164891 39.867 301 169 5 53 342 93 392 2.59e-67 216
Msa0218060 MtrunA17_Chr1g0188431 35.625 320 199 6 24 342 14 327 6.65e-67 213
Msa0218060 MtrunA17_Chr2g0296621 39.073 302 166 7 49 342 50 341 9.23e-67 213
Msa0218060 MtrunA17_Chr4g0075241 36.570 309 173 5 48 342 28 327 2.44e-64 207
Msa0218060 MtrunA17_Chr1g0197411 35.347 331 201 6 22 342 3 330 4.37e-63 204
Msa0218060 MtrunA17_Chr5g0401431 37.690 329 193 5 24 341 1 328 4.57e-63 203
Msa0218060 MtrunA17_Chr6g0467121 37.349 332 188 7 25 342 38 363 5.32e-63 205
Msa0218060 MtrunA17_Chr4g0076211 38.384 297 166 7 54 342 46 333 1.04e-62 202
Msa0218060 MtrunA17_Chr1g0181511 35.548 301 187 4 47 342 25 323 1.68e-62 202
Msa0218060 MtrunA17_Chr4g0072091 39.203 301 169 5 48 338 23 319 5.76e-62 200
Msa0218060 MtrunA17_Chr3g0136751 35.976 328 195 4 24 342 1 322 1.13e-60 197
Msa0218060 MtrunA17_Chr3g0114461 53.804 184 85 0 159 342 9 192 2.73e-60 192
Msa0218060 MtrunA17_Chr2g0316481 35.045 331 174 7 47 338 74 402 3.47e-59 196
Msa0218060 MtrunA17_Chr6g0451571 36.184 304 185 5 47 342 32 334 4.92e-59 193
Msa0218060 MtrunA17_Chr1g0181481 35.216 301 188 4 47 342 25 323 7.46e-59 192
Msa0218060 MtrunA17_Chr2g0279061 42.912 261 132 6 93 342 12 266 1.50e-58 190
Msa0218060 MtrunA17_Chr1g0181431 34.551 301 190 4 47 342 25 323 1.76e-58 191
Msa0218060 MtrunA17_Chr2g0316831 33.939 330 179 5 47 338 110 438 2.46e-58 194
Msa0218060 MtrunA17_Chr8g0364291 35.410 305 187 4 47 342 21 324 4.06e-58 191
Msa0218060 MtrunA17_Chr2g0316791 34.835 333 172 9 47 338 74 402 1.14e-57 192
Msa0218060 MtrunA17_Chr2g0278671 38.312 308 172 8 47 342 22 323 1.79e-57 189
Msa0218060 MtrunA17_Chr2g0316191 33.735 332 178 7 47 338 74 403 1.02e-56 189
Msa0218060 MtrunA17_Chr2g0329641 34.218 339 201 8 20 342 3 335 3.42e-56 186
Msa0218060 MtrunA17_Chr6g0467251 35.220 318 194 6 30 338 10 324 1.18e-55 185
Msa0218060 MtrunA17_Chr5g0413051 35.484 310 183 9 47 342 71 377 2.72e-53 179
Msa0218060 MtrunA17_Chr4g0074851 34.459 296 187 4 52 342 35 328 3.12e-53 178
Msa0218060 MtrunA17_Chr2g0311251 33.731 335 179 9 47 341 9 340 2.23e-52 176
Msa0218060 MtrunA17_Chr2g0311241 31.034 377 176 9 47 342 58 431 1.33e-51 176
Msa0218060 MtrunA17_Chr3g0114491 60.550 109 43 0 48 156 17 125 8.72e-43 145
Msa0218060 MtrunA17_Chr2g0292281 40.952 210 104 5 142 342 18 216 2.97e-40 141
Msa0218060 MtrunA17_Chr2g0316811 41.765 170 96 2 47 214 48 216 1.76e-38 139
Msa0218060 MtrunA17_Chr2g0316141 35.424 271 150 10 95 342 11 279 5.23e-38 137
Msa0218060 MtrunA17_Chr2g0316181 35.424 271 150 10 95 342 11 279 5.23e-38 137
Msa0218060 MtrunA17_Chr4g0004591 26.006 323 171 4 46 341 74 355 1.73e-35 132
Msa0218060 MtrunA17_Chr5g0432321 52.137 117 55 1 170 286 17 132 2.64e-34 122
Msa0218060 MtrunA17_Chr3g0104101 40.690 145 75 5 209 342 5 149 3.86e-24 96.7
Msa0218060 MtrunA17_Chr1g0181491 41.593 113 64 2 47 159 10 120 2.38e-23 94.4
Msa0218060 MtrunA17_Chr5g0432361 50.000 90 43 2 253 341 20 108 3.37e-23 92.8
Msa0218060 MtrunA17_Chr1g0181501 30.159 189 125 4 159 342 3 189 2.95e-21 89.7
Msa0218060 MtrunA17_Chr7g0254181 40.000 105 59 2 111 215 22 122 2.53e-19 83.6
Msa0218060 MtrunA17_Chr6g0468731 54.167 72 29 2 88 159 22 89 4.01e-18 78.2
Msa0218060 MtrunA17_Chr3g0137751 27.106 273 131 9 64 321 91 310 1.46e-16 79.3
Msa0218060 MtrunA17_Chr4g0013811 43.243 74 42 0 160 233 6 79 1.12e-15 71.2
Msa0218060 MtrunA17_Chr7g0254171 31.061 132 90 1 95 226 4 134 9.82e-14 67.8
Msa0218060 MtrunA17_Chr3g0124821 27.778 198 119 6 142 329 180 363 1.31e-13 71.2
Msa0218060 MtrunA17_Chr1g0196191 50.746 67 32 1 91 157 27 92 1.40e-12 64.7
Msa0218060 MtrunA17_Chr2g0316771 25.140 179 96 4 197 338 5 182 7.75e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0218060 AT5G05340.1 60.000 300 117 2 45 342 26 324 7.19e-130 374
Msa0218060 AT5G58400.1 54.286 315 139 4 31 342 13 325 1.84e-112 330
Msa0218060 AT3G50990.1 51.077 325 150 3 26 342 18 341 7.86e-110 324
Msa0218060 AT4G36430.1 49.688 320 148 4 31 342 16 330 2.23e-109 322
Msa0218060 AT5G58390.1 54.114 316 141 4 30 342 2 316 3.85e-109 321
Msa0218060 AT1G14550.1 50.318 314 154 2 31 342 8 321 1.85e-108 320
Msa0218060 AT5G66390.1 51.827 301 138 1 49 342 33 333 1.27e-107 318
Msa0218060 AT2G18140.1 47.164 335 167 2 18 342 1 335 3.49e-107 317
Msa0218060 AT2G18150.1 51.656 302 137 3 49 342 36 336 6.78e-107 316
Msa0218060 AT1G14540.1 47.500 320 162 2 24 342 1 315 1.49e-102 304
Msa0218060 AT5G06720.1 49.186 307 148 2 44 342 27 333 4.39e-102 304
Msa0218060 AT1G44970.1 52.303 304 137 2 47 342 43 346 4.58e-102 304
Msa0218060 AT2G38390.1 48.889 315 152 3 37 342 19 333 5.12e-100 299
Msa0218060 AT3G32980.1 49.051 316 151 3 37 342 19 334 2.94e-99 297
Msa0218060 AT4G08780.1 49.675 308 143 5 46 342 21 327 8.47e-99 296
Msa0218060 AT5G19890.1 48.297 323 149 6 30 342 13 327 9.33e-98 293
Msa0218060 AT5G06730.1 46.296 324 162 4 27 342 15 334 4.72e-97 292
Msa0218060 AT4G08770.1 46.965 313 156 3 40 342 15 327 5.74e-96 289
Msa0218060 AT1G49570.1 48.684 304 145 3 45 338 44 346 1.59e-95 288
Msa0218060 AT2G38380.1 47.619 315 156 3 37 342 19 333 4.46e-95 286
Msa0218060 AT3G49120.1 47.059 323 160 4 30 342 14 335 9.28e-94 283
Msa0218060 AT3G49110.1 46.203 316 160 3 37 342 21 336 2.73e-91 277
Msa0218060 AT4G16270.1 47.138 297 148 3 53 342 54 348 1.98e-90 275
Msa0218060 AT2G22420.1 42.945 326 172 5 24 342 1 319 9.90e-87 265
Msa0218060 AT2G35380.1 44.207 328 166 3 32 342 8 335 6.98e-86 263
Msa0218060 AT5G19880.1 44.984 309 157 5 46 342 22 329 1.78e-84 259
Msa0218060 AT1G68850.1 41.694 307 165 6 49 342 30 335 5.33e-84 258
Msa0218060 AT3G03670.1 41.584 303 168 3 47 342 21 321 5.85e-76 236
Msa0218060 AT1G05260.1 37.920 327 193 3 24 342 1 325 4.71e-75 234
Msa0218060 AT1G71695.1 41.176 323 184 5 24 342 19 339 5.88e-75 235
Msa0218060 AT5G42180.1 42.667 300 159 5 49 341 23 316 3.95e-74 232
Msa0218060 AT5G14130.1 37.910 335 195 6 16 342 1 330 6.16e-74 232
Msa0218060 AT5G14130.2 37.870 338 197 6 13 342 39 371 7.47e-74 233
Msa0218060 AT5G15180.1 39.319 323 181 7 30 342 12 329 2.89e-73 230
Msa0218060 AT5G17820.1 40.924 303 161 6 47 342 22 313 5.22e-73 229
Msa0218060 AT5G17820.2 40.924 303 161 6 47 342 75 366 2.47e-72 229
Msa0218060 AT5G64120.1 41.554 296 161 5 53 342 39 328 4.63e-71 224
Msa0218060 AT4G37530.1 39.869 306 173 4 47 342 25 329 3.19e-69 219
Msa0218060 AT2G41480.1 37.647 340 187 8 16 342 1 328 3.42e-69 219
Msa0218060 AT4G11290.1 36.842 323 194 3 28 342 6 326 1.20e-68 218
Msa0218060 AT4G30170.1 40.129 309 168 7 45 342 23 325 1.81e-68 218
Msa0218060 AT5G40150.1 38.538 301 180 4 46 342 29 328 1.82e-68 218
Msa0218060 AT4G26010.2 38.037 326 185 8 19 342 27 337 3.17e-68 217
Msa0218060 AT3G01190.1 39.024 328 184 7 24 342 1 321 4.89e-68 216
Msa0218060 AT3G28200.1 38.411 302 182 4 44 342 16 316 6.23e-68 216
Msa0218060 AT4G26010.1 39.597 298 170 7 47 342 20 309 1.03e-67 215
Msa0218060 AT3G21770.1 37.086 302 180 3 47 340 27 326 1.14e-67 216
Msa0218060 AT5G67400.1 38.390 323 188 4 30 342 8 329 1.24e-67 216
Msa0218060 AT2G18980.1 38.820 322 182 5 31 342 7 323 5.67e-67 214
Msa0218060 AT5G39580.1 40.741 297 163 6 53 342 29 319 5.93e-67 213
Msa0218060 AT1G05240.1 38.264 311 172 6 45 342 22 325 6.55e-67 213
Msa0218060 AT1G05250.1 38.264 311 172 6 45 342 22 325 6.55e-67 213
Msa0218060 AT3G49960.1 38.462 325 189 4 28 342 6 329 7.27e-67 214
Msa0218060 AT4G37520.1 37.908 306 179 4 47 342 25 329 1.74e-66 213
Msa0218060 AT4G33420.1 38.644 295 174 6 49 342 37 325 3.09e-65 209
Msa0218060 AT4G33420.2 38.644 295 174 6 49 342 84 372 1.13e-64 209
Msa0218060 AT4G37520.2 37.582 306 177 5 47 342 25 326 3.14e-64 207
Msa0218060 AT5G51890.1 37.377 305 178 6 46 342 23 322 1.16e-63 205
Msa0218060 AT2G35380.2 44.715 246 124 2 109 342 2 247 1.36e-62 200
Msa0218060 AT2G34060.1 36.418 335 200 6 18 340 11 344 1.58e-62 203
Msa0218060 AT1G30870.1 38.667 300 165 7 49 338 51 341 2.32e-62 202
Msa0218060 AT4G31760.1 36.637 333 191 6 19 342 5 326 4.82e-61 198
Msa0218060 AT5G64110.1 39.799 299 165 5 53 342 38 330 5.50e-61 198
Msa0218060 AT4G17690.1 36.577 298 184 4 49 342 26 322 7.72e-61 198
Msa0218060 AT4G37530.2 42.913 254 135 3 47 290 25 278 1.33e-60 196
Msa0218060 AT2G24800.1 36.601 306 179 4 47 342 29 329 5.25e-60 196
Msa0218060 AT1G77100.1 39.077 325 186 10 24 342 1 319 8.07e-60 195
Msa0218060 AT2G39040.1 39.103 312 171 8 46 342 43 350 1.31e-59 196
Msa0218060 AT4G25980.1 35.583 326 192 7 29 342 7 326 3.99e-59 193
Msa0218060 AT5G64100.1 37.667 300 170 6 52 342 40 331 9.39e-59 192
Msa0218060 AT4G33870.1 32.628 331 175 7 52 338 71 397 3.28e-58 193
Msa0218060 AT5G47000.1 35.423 319 198 5 31 342 13 330 1.26e-57 190
Msa0218060 AT1G34510.1 37.333 300 180 6 44 342 17 309 2.99e-57 188
Msa0218060 AT1G24110.1 37.461 323 184 8 30 342 8 322 1.25e-56 187
Msa0218060 AT5G24070.1 35.224 335 186 10 31 342 9 335 1.35e-56 187
Msa0218060 AT4G21960.1 33.951 324 203 5 28 342 6 327 2.33e-56 186
Msa0218060 AT2G43480.1 36.013 311 174 10 48 342 34 335 2.12e-55 184
Msa0218060 AT5G22410.1 35.410 305 177 8 47 339 26 322 1.68e-54 182
Msa0218060 AT2G37130.1 34.426 305 188 6 46 342 27 327 4.41e-53 178
Msa0218060 AT3G17070.1 33.934 333 202 9 25 342 10 339 1.73e-52 177
Msa0218060 AT2G37130.2 34.448 299 184 6 52 342 2 296 3.82e-52 174
Msa0218060 AT5G39580.2 41.117 197 107 4 53 249 29 216 5.38e-42 146
Msa0218060 AT2G24800.2 37.915 211 122 3 47 252 29 235 1.24e-39 140
Msa0218060 AT4G25980.2 36.866 217 127 5 5 216 23 234 1.31e-39 141
Msa0218060 AT3G17070.2 34.221 263 158 8 91 342 18 276 3.30e-38 137
Msa0218060 AT3G42570.1 35.484 93 59 1 125 216 57 149 2.36e-13 67.4
Msa0218060 AT1G77490.2 25.357 280 167 8 62 324 85 339 2.86e-13 70.9
Msa0218060 AT1G77490.1 25.357 280 167 8 62 324 85 339 3.07e-13 70.9
Msa0218060 AT4G08390.3 27.749 191 114 6 142 324 185 359 4.35e-13 70.1
Msa0218060 AT4G08390.2 27.749 191 114 6 142 324 186 360 4.71e-13 69.7
Msa0218060 AT4G08390.5 27.749 191 114 6 142 324 186 360 4.71e-13 69.7
Msa0218060 AT4G08390.1 27.749 191 114 6 142 324 186 360 4.71e-13 69.7

Find 71 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGACCTTACAGTCCTTTC+TGG 0.193319 2_1:+65097658 Msa0218060:CDS
GCAGGGTTGTGAATTGATTT+TGG 0.222497 2_1:+65098052 Msa0218060:exon
CGCACAATAGTTTGGAGATT+TGG 0.230163 2_1:-65095637 None:intergenic
ATTTGACAACAATTATTATA+AGG 0.243384 2_1:+65097840 Msa0218060:CDS
CGGAGAAAGTTGTGCATTAA+TGG 0.253773 2_1:-65095593 None:intergenic
CAGAAGATGGTCCAGGAATT+TGG 0.260659 2_1:-65097588 None:intergenic
TTGAGAGATTGTTTAATTAC+AGG 0.275887 2_1:+65098171 Msa0218060:three_prime_UTR
AGAATCAAAGGGTGCTAAAT+TGG 0.309264 2_1:-65097803 None:intergenic
AAAGACCTTTATTAGCAATA+AGG 0.316103 2_1:-65097864 None:intergenic
TATTTATAGATTTAACTATA+TGG 0.322853 2_1:+65095513 Msa0218060:CDS
TGTTGGTTCTCAAATTTCTT+TGG 0.324712 2_1:+65097915 Msa0218060:CDS
TTTCATTGCGCACAATAGTT+TGG 0.326396 2_1:-65095645 None:intergenic
ATCAATCTTATTGGATGATA+AGG 0.345152 2_1:+65097119 Msa0218060:CDS
ATGTGATGCATCAATCTTAT+TGG 0.358275 2_1:+65097110 Msa0218060:CDS
AGTAAAATTAGTCCTCTTAC+TGG 0.361292 2_1:+65098003 Msa0218060:CDS
TTGATAATTTGTAGTATTGT+TGG 0.376154 2_1:+65098230 Msa0218060:three_prime_UTR
AAGGACCTTATTGCTAATAA+AGG 0.382204 2_1:+65097859 Msa0218060:CDS
TAGTCCTCTTACTGGGACTA+AGG 0.384532 2_1:+65098011 Msa0218060:CDS
GCAGCAAACAGCCAAATTCC+TGG 0.386973 2_1:+65097577 Msa0218060:CDS
GTGAGATCAGAAAGAATTGC+AGG 0.399204 2_1:+65098034 Msa0218060:CDS
TAATTGTTGTCAAATTTAGT+TGG 0.427829 2_1:-65097832 None:intergenic
CATAAAGGTTGACTAGATCT+TGG 0.429036 2_1:+65098202 Msa0218060:three_prime_UTR
GATGATAAGGGAACATTTGT+CGG 0.429735 2_1:+65097132 Msa0218060:CDS
GTTCTCAAATTTCTTTGGTT+AGG 0.431163 2_1:+65097920 Msa0218060:CDS
TCAATCTTATTGGATGATAA+GGG 0.439805 2_1:+65097120 Msa0218060:CDS
TTACATTTACAAAGCAATCA+TGG 0.442899 2_1:-65095726 None:intergenic
TAGAGACTTTGCTGCTGCTA+TGG 0.447233 2_1:+65097972 Msa0218060:CDS
TTACAGGGTCTAGGTCATAA+AGG 0.449606 2_1:+65098187 Msa0218060:three_prime_UTR
CTTCATTTGCTTCCCTCCAT+TGG 0.453290 2_1:+65095475 Msa0218060:CDS
CAAGTTCTTGCATAGAAGTT+CGG 0.454666 2_1:-65095613 None:intergenic
ATTGTTTAATTACAGGGTCT+AGG 0.465800 2_1:+65098178 Msa0218060:three_prime_UTR
TCACCCTTAGTCCCAGTAAG+AGG 0.474368 2_1:-65098015 None:intergenic
TTGTGAGACTAATAATTTGA+GGG 0.486054 2_1:+65098112 Msa0218060:three_prime_UTR
AGCAAGGTTTCTGTTAATGT+TGG 0.494360 2_1:-65097740 None:intergenic
GTTAGGAAGTATAGTAGAGA+TGG 0.495131 2_1:+65097937 Msa0218060:CDS
TTGACACTCAGTTTGCCCTA+TGG 0.499810 2_1:-65097689 None:intergenic
AAAAGAAATTGTCCTACCTC+TGG 0.501405 2_1:+65097772 Msa0218060:CDS
CTTGCATCTCTTCTTCCTAG+TGG 0.506526 2_1:-65097538 None:intergenic
CTTTCTGGTGCACACACCAT+AGG 0.506834 2_1:+65097673 Msa0218060:CDS
AGTTGGAGTGACAGAATCAA+AGG 0.515916 2_1:-65097815 None:intergenic
CTAGCACTTGCAACTAGAGA+TGG 0.521717 2_1:+65097267 Msa0218060:CDS
AATTAATTTATATAGCTTGG+AGG 0.537880 2_1:+65097499 Msa0218060:intron
GATAGGTCAGAAGATGGTCC+AGG 0.542401 2_1:-65097595 None:intergenic
TGTAACAAAGAGTTTAATCA+AGG 0.543770 2_1:-65095539 None:intergenic
TTTGTGAGACTAATAATTTG+AGG 0.546498 2_1:+65098111 Msa0218060:three_prime_UTR
TGAGAGATTGTTTAATTACA+GGG 0.549156 2_1:+65098172 Msa0218060:three_prime_UTR
AACTAGAGATGGAATAGCAC+TGG 0.557344 2_1:+65097278 Msa0218060:CDS
AGAAATTGTCCTACCTCTGG+TGG 0.560005 2_1:+65097775 Msa0218060:CDS
TATAGCTTGGAGGACCCTCA+TGG 0.560384 2_1:+65097509 Msa0218060:intron
ATCTAGCTTGAAGCTACCAA+TGG 0.565347 2_1:-65095491 None:intergenic
AGTCCTCTTACTGGGACTAA+GGG 0.567071 2_1:+65098012 Msa0218060:CDS
TAGCTTGAAGCTACCAATGG+AGG 0.570010 2_1:-65095488 None:intergenic
GTGCACCAGAAAGGACTGTA+AGG 0.571331 2_1:-65097663 None:intergenic
GCAATTTAATAAATATTGTG+TGG 0.572460 2_1:+65098142 Msa0218060:three_prime_UTR
TCCTAGTGGTACTGTCCATG+AGG 0.574303 2_1:-65097524 None:intergenic
TTTGCAAGAAGCTTCAACGT+TGG 0.574605 2_1:-65097220 None:intergenic
ACATTCTAGTGAGTGTGGAT+AGG 0.580024 2_1:-65097612 None:intergenic
GTTGGAGTGACAGAATCAAA+GGG 0.583532 2_1:-65097814 None:intergenic
TTTCTGGTGCACACACCATA+GGG 0.590778 2_1:+65097674 Msa0218060:CDS
GTAAAATTAGTCCTCTTACT+GGG 0.603083 2_1:+65098004 Msa0218060:CDS
CCTAGTGGTACTGTCCATGA+GGG 0.605688 2_1:-65097523 None:intergenic
TTGAAACATTCTAGTGAGTG+TGG 0.606627 2_1:-65097617 None:intergenic
TAAATTGGTGTCACCACCAG+AGG 0.617325 2_1:-65097788 None:intergenic
AGCTTGAAGCTACCAATGGA+GGG 0.617960 2_1:-65095487 None:intergenic
AGTGTGGATAGGTCAGAAGA+TGG 0.621043 2_1:-65097601 None:intergenic
AACAAAGAGTTTAATCAAGG+TGG 0.628414 2_1:-65095536 None:intergenic
CTATGGTGTGTGCACCAGAA+AGG 0.646942 2_1:-65097672 None:intergenic
CCCTCATGGACAGTACCACT+AGG 0.647878 2_1:+65097523 Msa0218060:CDS
AATATCTGCACAAGAGACAG+TGG 0.650907 2_1:-65097244 None:intergenic
TGAGATCAGAAAGAATTGCA+GGG 0.655189 2_1:+65098035 Msa0218060:CDS
TTGGTGTCACCACCAGAGGT+AGG 0.659540 2_1:-65097784 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATAGATTTAACTATA+TGG + chr2_1:65095513-65095532 Msa0218060:CDS 10.0%
!!! TTAATTAAGCTTTTTTTTAT+AGG - chr2_1:65096152-65096171 None:intergenic 10.0%
!! ACAAAATTCTAAATATTTAT+AGG + chr2_1:65096403-65096422 Msa0218060:intron 10.0%
!! CAAAATTCTAAATATTTATA+GGG + chr2_1:65096404-65096423 Msa0218060:intron 10.0%
!! TATTGAAAAATTAAAATGAT+CGG - chr2_1:65096807-65096826 None:intergenic 10.0%
!! CATATATAAATATATAAACT+AGG + chr2_1:65097341-65097360 Msa0218060:intron 10.0%
!! TATATAAATTAATTGAAACA+TGG - chr2_1:65097493-65097512 None:intergenic 10.0%
!! CTCAATAATTTATATAACTT+AGG + chr2_1:65095830-65095849 Msa0218060:intron 15.0%
!!! AAACAACATCATTTTTTATT+GGG - chr2_1:65096447-65096466 None:intergenic 15.0%
!! AAAAAAAAAAAAAATGCACA+GGG - chr2_1:65096601-65096620 None:intergenic 15.0%
!! ATTGAAAAATTAAAATGATC+GGG - chr2_1:65096806-65096825 None:intergenic 15.0%
!!! GTTTTATTTCTTTGTTTATT+TGG + chr2_1:65097082-65097101 Msa0218060:intron 15.0%
!! TTCAATTAATTTATATAGCT+TGG + chr2_1:65097496-65097515 Msa0218060:intron 15.0%
!! ATTTGACAACAATTATTATA+AGG + chr2_1:65097840-65097859 Msa0218060:CDS 15.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr2_1:65096215-65096234 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr2_1:65096216-65096235 None:intergenic 20.0%
!!! ACATTTTCCTTAAACATTTT+AGG + chr2_1:65096248-65096267 Msa0218060:intron 20.0%
!!! CATTTTCCTTAAACATTTTA+GGG + chr2_1:65096249-65096268 Msa0218060:intron 20.0%
!!! AAAATTTCCATCAACATTTT+TGG - chr2_1:65096276-65096295 None:intergenic 20.0%
!! TATTGGGTTAATTAAGTAAA+TGG - chr2_1:65096431-65096450 None:intergenic 20.0%
!!! CAAACAACATCATTTTTTAT+TGG - chr2_1:65096448-65096467 None:intergenic 20.0%
!! AAAAAAAAAAAAATGCACAG+GGG - chr2_1:65096600-65096619 None:intergenic 20.0%
!! CAAAAAAAAAAAAAATGCAC+AGG - chr2_1:65096602-65096621 None:intergenic 20.0%
!! TCAACAACAAAAAATAATCA+CGG + chr2_1:65096989-65097008 Msa0218060:intron 20.0%
!!! TATTTCTTTGTTTATTTGGT+AGG + chr2_1:65097086-65097105 Msa0218060:intron 20.0%
!!! ATTTCTTTGTTTATTTGGTA+GGG + chr2_1:65097087-65097106 Msa0218060:intron 20.0%
!! TTTAACTCGAGTAATATTAA+CGG + chr2_1:65097375-65097394 Msa0218060:intron 20.0%
!!! GTTAATATTTTTTTACAGAG+GGG - chr2_1:65097412-65097431 None:intergenic 20.0%
!!! GGTTAATATTTTTTTACAGA+GGG - chr2_1:65097413-65097432 None:intergenic 20.0%
!! TATTAACCCTAATATTACAT+TGG + chr2_1:65097425-65097444 Msa0218060:intron 20.0%
!! TGTTTACCAATGTAATATTA+GGG - chr2_1:65097434-65097453 None:intergenic 20.0%
!! ATGTTTACCAATGTAATATT+AGG - chr2_1:65097435-65097454 None:intergenic 20.0%
!! ATTAATTGAAACATGGTTAT+AGG - chr2_1:65097486-65097505 None:intergenic 20.0%
!! AATTAATTTATATAGCTTGG+AGG + chr2_1:65097499-65097518 Msa0218060:intron 20.0%
!! TAATTGTTGTCAAATTTAGT+TGG - chr2_1:65097835-65097854 None:intergenic 20.0%
!! GCAATTTAATAAATATTGTG+TGG + chr2_1:65098142-65098161 Msa0218060:three_prime_UTR 20.0%
!!! TTGATAATTTGTAGTATTGT+TGG + chr2_1:65098230-65098249 Msa0218060:three_prime_UTR 20.0%
! TGTAACAAAGAGTTTAATCA+AGG - chr2_1:65095542-65095561 None:intergenic 25.0%
! TTACATTTACAAAGCAATCA+TGG - chr2_1:65095729-65095748 None:intergenic 25.0%
!! TGAGAAGAGTATATGTTTAA+AGG + chr2_1:65095934-65095953 Msa0218060:intron 25.0%
! ATCGTGTTAAAATATTGTCT+TGG + chr2_1:65095986-65096005 Msa0218060:intron 25.0%
! TCGTGTTAAAATATTGTCTT+GGG + chr2_1:65095987-65096006 Msa0218060:intron 25.0%
! GTAAGGATTAATTATTCGAT+TGG + chr2_1:65096038-65096057 Msa0218060:intron 25.0%
!! TGCTGATGGAAAATTTTATA+AGG + chr2_1:65096344-65096363 Msa0218060:intron 25.0%
!!! AAAGTGTGACTTTATTTTGT+AGG + chr2_1:65096372-65096391 Msa0218060:intron 25.0%
!!! AAGTGTGACTTTATTTTGTA+GGG + chr2_1:65096373-65096392 Msa0218060:intron 25.0%
!!! TGTTGTTTTATATGTTGTCT+TGG + chr2_1:65096643-65096662 Msa0218060:intron 25.0%
! ATTTATTACTGTACTCACTA+TGG - chr2_1:65096955-65096974 None:intergenic 25.0%
! CAACAACAAAAAATAATCAC+GGG + chr2_1:65096990-65097009 Msa0218060:intron 25.0%
!!! TTCAGTTACTATTTTAGTCA+CGG + chr2_1:65097019-65097038 Msa0218060:intron 25.0%
! ATCAATCTTATTGGATGATA+AGG + chr2_1:65097119-65097138 Msa0218060:CDS 25.0%
! TCAATCTTATTGGATGATAA+GGG + chr2_1:65097120-65097139 Msa0218060:CDS 25.0%
!!! GGGTTAATATTTTTTTACAG+AGG - chr2_1:65097414-65097433 None:intergenic 25.0%
!! TTCTTTTTCTTAAGTTAGCA+AGG - chr2_1:65097759-65097778 None:intergenic 25.0%
! AAAGACCTTTATTAGCAATA+AGG - chr2_1:65097867-65097886 None:intergenic 25.0%
! TTTGTGAGACTAATAATTTG+AGG + chr2_1:65098111-65098130 Msa0218060:three_prime_UTR 25.0%
! TTGTGAGACTAATAATTTGA+GGG + chr2_1:65098112-65098131 Msa0218060:three_prime_UTR 25.0%
! TTGAGAGATTGTTTAATTAC+AGG + chr2_1:65098171-65098190 Msa0218060:three_prime_UTR 25.0%
! TGAGAGATTGTTTAATTACA+GGG + chr2_1:65098172-65098191 Msa0218060:three_prime_UTR 25.0%
AACAAAGAGTTTAATCAAGG+TGG - chr2_1:65095539-65095558 None:intergenic 30.0%
AAGTTATCAAAAATGAAGCC+CGG + chr2_1:65095674-65095693 Msa0218060:CDS 30.0%
AGAGTATATGTTTAAAGGTG+TGG + chr2_1:65095939-65095958 Msa0218060:intron 30.0%
CGTGTTAAAATATTGTCTTG+GGG + chr2_1:65095988-65096007 Msa0218060:intron 30.0%
! TAATTCGCTTTGTTGTATGA+TGG + chr2_1:65096088-65096107 Msa0218060:intron 30.0%
! AATTCGCTTTGTTGTATGAT+GGG + chr2_1:65096089-65096108 Msa0218060:intron 30.0%
TTTGGTCCCTAAAATGTTTA+AGG - chr2_1:65096258-65096277 None:intergenic 30.0%
!! TGTTGATGGAAATTTTTGAC+AGG + chr2_1:65096280-65096299 Msa0218060:intron 30.0%
ATAGTGACTAAAAATGCTGA+TGG + chr2_1:65096330-65096349 Msa0218060:intron 30.0%
TTGATTTCTCATCTTCATTG+TGG + chr2_1:65096677-65096696 Msa0218060:intron 30.0%
!!! TCAGTTACTATTTTAGTCAC+GGG + chr2_1:65097020-65097039 Msa0218060:intron 30.0%
ATGTGATGCATCAATCTTAT+TGG + chr2_1:65097110-65097129 Msa0218060:CDS 30.0%
ACCTAACAAAAATTCAGCTA+GGG + chr2_1:65097170-65097189 Msa0218060:CDS 30.0%
GTTCATTGTTCATGTCTTAT+AGG - chr2_1:65097322-65097341 None:intergenic 30.0%
GGATACACATATTGTTTACA+GGG - chr2_1:65097465-65097484 None:intergenic 30.0%
AGGATACACATATTGTTTAC+AGG - chr2_1:65097466-65097485 None:intergenic 30.0%
AAGGACCTTATTGCTAATAA+AGG + chr2_1:65097859-65097878 Msa0218060:CDS 30.0%
! TCTGATCAAGTTCTTTTCAA+TGG + chr2_1:65097892-65097911 Msa0218060:CDS 30.0%
!! TGTTGGTTCTCAAATTTCTT+TGG + chr2_1:65097915-65097934 Msa0218060:CDS 30.0%
GTTCTCAAATTTCTTTGGTT+AGG + chr2_1:65097920-65097939 Msa0218060:CDS 30.0%
AGTAAAATTAGTCCTCTTAC+TGG + chr2_1:65098003-65098022 Msa0218060:CDS 30.0%
GTAAAATTAGTCCTCTTACT+GGG + chr2_1:65098004-65098023 Msa0218060:CDS 30.0%
!! GTTGTGAATTGATTTTGGAT+TGG + chr2_1:65098057-65098076 Msa0218060:exon 30.0%
ATTGTTTAATTACAGGGTCT+AGG + chr2_1:65098178-65098197 Msa0218060:three_prime_UTR 30.0%
CAAGTTCTTGCATAGAAGTT+CGG - chr2_1:65095616-65095635 None:intergenic 35.0%
TTTCATTGCGCACAATAGTT+TGG - chr2_1:65095648-65095667 None:intergenic 35.0%
! GTATATGTTTAAAGGTGTGG+TGG + chr2_1:65095942-65095961 Msa0218060:intron 35.0%
!! AAAGGTGTGGTGGATAAAAT+TGG + chr2_1:65095952-65095971 Msa0218060:intron 35.0%
GTTAAAATATTGTCTTGGGG+TGG + chr2_1:65095991-65096010 Msa0218060:intron 35.0%
GTAGCTTAGAGAGAATTGTA+AGG + chr2_1:65096021-65096040 Msa0218060:intron 35.0%
! ATTCGATTGGTGTTCATGTT+TGG + chr2_1:65096051-65096070 Msa0218060:intron 35.0%
! TTCGATTGGTGTTCATGTTT+GGG + chr2_1:65096052-65096071 Msa0218060:intron 35.0%
TTAGGGACCAAAAATGTTGA+TGG + chr2_1:65096266-65096285 Msa0218060:intron 35.0%
ACAGGTACTAAAAATGCTGA+TGG + chr2_1:65096298-65096317 Msa0218060:intron 35.0%
GATGATAAGGGAACATTTGT+CGG + chr2_1:65097132-65097151 Msa0218060:CDS 35.0%
GACCTAACAAAAATTCAGCT+AGG + chr2_1:65097169-65097188 Msa0218060:CDS 35.0%
CCTAACAAAAATTCAGCTAG+GGG + chr2_1:65097171-65097190 Msa0218060:CDS 35.0%
!!! AGCTTCAACGTTGGTTTTAA+TGG - chr2_1:65097214-65097233 None:intergenic 35.0%
TTGAAACATTCTAGTGAGTG+TGG - chr2_1:65097620-65097639 None:intergenic 35.0%
AGCAAGGTTTCTGTTAATGT+TGG - chr2_1:65097743-65097762 None:intergenic 35.0%
AAAAGAAATTGTCCTACCTC+TGG + chr2_1:65097772-65097791 Msa0218060:CDS 35.0%
!! AGAATCAAAGGGTGCTAAAT+TGG - chr2_1:65097806-65097825 None:intergenic 35.0%
! CAAGTTCTTTTCAATGGTGT+TGG + chr2_1:65097898-65097917 Msa0218060:CDS 35.0%
! GTTAGGAAGTATAGTAGAGA+TGG + chr2_1:65097937-65097956 Msa0218060:CDS 35.0%
TGAGATCAGAAAGAATTGCA+GGG + chr2_1:65098035-65098054 Msa0218060:CDS 35.0%
CATAAAGGTTGACTAGATCT+TGG + chr2_1:65098202-65098221 Msa0218060:three_prime_UTR 35.0%
! ATCTAGCTTGAAGCTACCAA+TGG - chr2_1:65095494-65095513 None:intergenic 40.0%
CGGAGAAAGTTGTGCATTAA+TGG - chr2_1:65095596-65095615 None:intergenic 40.0%
CGCACAATAGTTTGGAGATT+TGG - chr2_1:65095640-65095659 None:intergenic 40.0%
TATCAAAAATGAAGCCCGGA+TGG + chr2_1:65095678-65095697 Msa0218060:CDS 40.0%
ATCAAAAATGAAGCCCGGAT+GGG + chr2_1:65095679-65095698 Msa0218060:CDS 40.0%
GGTGGATAAAATTGGTGTAG+TGG + chr2_1:65095960-65095979 Msa0218060:intron 40.0%
! TGTGATTTGTCGTCTGCTTT+CGG + chr2_1:65096620-65096639 Msa0218060:intron 40.0%
TAGCGTCAATGTTACTGATC+AGG + chr2_1:65096768-65096787 Msa0218060:intron 40.0%
TTTGTCGGTGAGAAAAATGC+TGG + chr2_1:65097147-65097166 Msa0218060:CDS 40.0%
! CCCCTAGCTGAATTTTTGTT+AGG - chr2_1:65097174-65097193 None:intergenic 40.0%
TTTGCAAGAAGCTTCAACGT+TGG - chr2_1:65097223-65097242 None:intergenic 40.0%
AATATCTGCACAAGAGACAG+TGG - chr2_1:65097247-65097266 None:intergenic 40.0%
AACTAGAGATGGAATAGCAC+TGG + chr2_1:65097278-65097297 Msa0218060:CDS 40.0%
CGAGTAATATTAACGGCTTC+TGG + chr2_1:65097382-65097401 Msa0218060:intron 40.0%
ACATTCTAGTGAGTGTGGAT+AGG - chr2_1:65097615-65097634 None:intergenic 40.0%
AATGACCTTACAGTCCTTTC+TGG + chr2_1:65097658-65097677 Msa0218060:CDS 40.0%
GTTGGAGTGACAGAATCAAA+GGG - chr2_1:65097817-65097836 None:intergenic 40.0%
AGTTGGAGTGACAGAATCAA+AGG - chr2_1:65097818-65097837 None:intergenic 40.0%
GTGAGATCAGAAAGAATTGC+AGG + chr2_1:65098034-65098053 Msa0218060:CDS 40.0%
!! GCAGGGTTGTGAATTGATTT+TGG + chr2_1:65098052-65098071 Msa0218060:exon 40.0%
TTACAGGGTCTAGGTCATAA+AGG + chr2_1:65098187-65098206 Msa0218060:three_prime_UTR 40.0%
CTTCATTTGCTTCCCTCCAT+TGG + chr2_1:65095475-65095494 Msa0218060:CDS 45.0%
AGCTTGAAGCTACCAATGGA+GGG - chr2_1:65095490-65095509 None:intergenic 45.0%
TAGCTTGAAGCTACCAATGG+AGG - chr2_1:65095491-65095510 None:intergenic 45.0%
TCAAAAATGAAGCCCGGATG+GGG + chr2_1:65095680-65095699 Msa0218060:CDS 45.0%
CGTCAATGTTACTGATCAGG+AGG + chr2_1:65096771-65096790 Msa0218060:intron 45.0%
TACTGTACTCACTATGGAGC+AGG - chr2_1:65096949-65096968 None:intergenic 45.0%
CTAGCACTTGCAACTAGAGA+TGG + chr2_1:65097267-65097286 Msa0218060:CDS 45.0%
CTTGCATCTCTTCTTCCTAG+TGG - chr2_1:65097541-65097560 None:intergenic 45.0%
CAGAAGATGGTCCAGGAATT+TGG - chr2_1:65097591-65097610 None:intergenic 45.0%
AGTGTGGATAGGTCAGAAGA+TGG - chr2_1:65097604-65097623 None:intergenic 45.0%
! TTTCTGGTGCACACACCATA+GGG + chr2_1:65097674-65097693 Msa0218060:CDS 45.0%
TTGACACTCAGTTTGCCCTA+TGG - chr2_1:65097692-65097711 None:intergenic 45.0%
AGAAATTGTCCTACCTCTGG+TGG + chr2_1:65097775-65097794 Msa0218060:CDS 45.0%
!! TAAATTGGTGTCACCACCAG+AGG - chr2_1:65097791-65097810 None:intergenic 45.0%
TAGAGACTTTGCTGCTGCTA+TGG + chr2_1:65097972-65097991 Msa0218060:CDS 45.0%
TAGTCCTCTTACTGGGACTA+AGG + chr2_1:65098011-65098030 Msa0218060:CDS 45.0%
AGTCCTCTTACTGGGACTAA+GGG + chr2_1:65098012-65098031 Msa0218060:CDS 45.0%
!! ATATATAAATATATAAACTA+GGG + chr2_1:65097342-65097361 Msa0218060:intron 5.0%
CAAAAATGAAGCCCGGATGG+GGG + chr2_1:65095681-65095700 Msa0218060:CDS 50.0%
AAGTATAGATGCCCCCATCC+GGG - chr2_1:65095695-65095714 None:intergenic 50.0%
GAAGTATAGATGCCCCCATC+CGG - chr2_1:65095696-65095715 None:intergenic 50.0%
TATAGCTTGGAGGACCCTCA+TGG + chr2_1:65097509-65097528 Msa0218060:intron 50.0%
CCTAGTGGTACTGTCCATGA+GGG - chr2_1:65097526-65097545 None:intergenic 50.0%
TCCTAGTGGTACTGTCCATG+AGG - chr2_1:65097527-65097546 None:intergenic 50.0%
GCAGCAAACAGCCAAATTCC+TGG + chr2_1:65097577-65097596 Msa0218060:CDS 50.0%
GATAGGTCAGAAGATGGTCC+AGG - chr2_1:65097598-65097617 None:intergenic 50.0%
GTGCACCAGAAAGGACTGTA+AGG - chr2_1:65097666-65097685 None:intergenic 50.0%
CTATGGTGTGTGCACCAGAA+AGG - chr2_1:65097675-65097694 None:intergenic 50.0%
! CTTTCTGGTGCACACACCAT+AGG + chr2_1:65097673-65097692 Msa0218060:CDS 50.0%
TCACCCTTAGTCCCAGTAAG+AGG - chr2_1:65098018-65098037 None:intergenic 50.0%
CCCTCATGGACAGTACCACT+AGG + chr2_1:65097523-65097542 Msa0218060:CDS 55.0%
!! TTGGTGTCACCACCAGAGGT+AGG - chr2_1:65097787-65097806 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 65095449 65098291 65095449 ID=Msa0218060;Name=Msa0218060
chr2_1 mRNA 65095449 65098291 65095449 ID=Msa0218060-mRNA-1;Parent=Msa0218060;Name=Msa0218060-mRNA-1;_AED=0.26;_eAED=0.26;_QI=14|1|1|1|1|1|3|223|342
chr2_1 exon 65095449 65095744 65095449 ID=Msa0218060-mRNA-1:exon:18104;Parent=Msa0218060-mRNA-1
chr2_1 exon 65097108 65097299 65097108 ID=Msa0218060-mRNA-1:exon:18105;Parent=Msa0218060-mRNA-1
chr2_1 exon 65097514 65098291 65097514 ID=Msa0218060-mRNA-1:exon:18106;Parent=Msa0218060-mRNA-1
chr2_1 five_prime_UTR 65095449 65095462 65095449 ID=Msa0218060-mRNA-1:five_prime_utr;Parent=Msa0218060-mRNA-1
chr2_1 CDS 65095463 65095744 65095463 ID=Msa0218060-mRNA-1:cds;Parent=Msa0218060-mRNA-1
chr2_1 CDS 65097108 65097299 65097108 ID=Msa0218060-mRNA-1:cds;Parent=Msa0218060-mRNA-1
chr2_1 CDS 65097514 65098068 65097514 ID=Msa0218060-mRNA-1:cds;Parent=Msa0218060-mRNA-1
chr2_1 three_prime_UTR 65098069 65098291 65098069 ID=Msa0218060-mRNA-1:three_prime_utr;Parent=Msa0218060-mRNA-1
Gene Sequence

>Msa0218060

ATGTTTCACACACTTCATTTGCTTCCCTCCATTGGTAGCTTCAAGCTAGATATTTATAGATTTAACTATATGGCCACCTTGATTAAACTCTTTGTTACACTCTCTATTTGTTCTCTCTTAGCTTGTTCAACCATTAATGCACAACTTTCTCCGAACTTCTATGCAAGAACTTGTCCAAATCTCCAAACTATTGTGCGCAATGAAATGATCAAAGTTATCAAAAATGAAGCCCGGATGGGGGCATCTATACTTCGCTTGTTCTTCCATGATTGCTTTGTAAATGGATGTGATGCATCAATCTTATTGGATGATAAGGGAACATTTGTCGGTGAGAAAAATGCTGGACCTAACAAAAATTCAGCTAGGGGTTTTGAAGTGATTGATACCATTAAAACCAACGTTGAAGCTTCTTGCAAAGCCACTGTCTCTTGTGCAGATATTCTAGCACTTGCAACTAGAGATGGAATAGCACTGCTTGGAGGACCCTCATGGACAGTACCACTAGGAAGAAGAGATGCAAGAACAGCAAGTCAAAGTGCAGCAAACAGCCAAATTCCTGGACCATCTTCTGACCTATCCACACTCACTAGAATGTTTCAAAACAAAAGTCTAACATTAAATGACCTTACAGTCCTTTCTGGTGCACACACCATAGGGCAAACTGAGTGTCAATTTTTTAGAAATCGCATACACAATGAAGCCAACATTAACAGAAACCTTGCTAACTTAAGAAAAAGAAATTGTCCTACCTCTGGTGGTGACACCAATTTAGCACCCTTTGATTCTGTCACTCCAACTAAATTTGACAACAATTATTATAAGGACCTTATTGCTAATAAAGGTCTTTTACATTCTGATCAAGTTCTTTTCAATGGTGTTGGTTCTCAAATTTCTTTGGTTAGGAAGTATAGTAGAGATGGTGCTGCTTTTTCTAGAGACTTTGCTGCTGCTATGGTGAAGATGAGTAAAATTAGTCCTCTTACTGGGACTAAGGGTGAGATCAGAAAGAATTGCAGGGTTGTGAATTGA

Protein sequence

>Msa0218060

MFHTLHLLPSIGSFKLDIYRFNYMATLIKLFVTLSICSLLACSTINAQLSPNFYARTCPNLQTIVRNEMIKVIKNEARMGASILRLFFHDCFVNGCDASILLDDKGTFVGEKNAGPNKNSARGFEVIDTIKTNVEASCKATVSCADILALATRDGIALLGGPSWTVPLGRRDARTASQSAANSQIPGPSSDLSTLTRMFQNKSLTLNDLTVLSGAHTIGQTECQFFRNRIHNEANINRNLANLRKRNCPTSGGDTNLAPFDSVTPTKFDNNYYKDLIANKGLLHSDQVLFNGVGSQISLVRKYSRDGAAFSRDFAAAMVKMSKISPLTGTKGEIRKNCRVVN*