Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408630 | XP_013459815.2 | 94.000 | 50 | 2 | 1 | 1 | 49 | 1 | 50 | 4.40e-18 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408630 | A0A072UXS0 | 96.364 | 55 | 2 | 0 | 1 | 55 | 1 | 55 | 5.78e-18 | 85.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005050 | Msa0408630 | 0.806450 | 8.176270e-50 | -8.615850e-47 |
| Msa0011720 | Msa0408630 | 0.817743 | 2.815238e-52 | -8.615850e-47 |
| Msa0012440 | Msa0408630 | 0.832763 | 7.853095e-56 | -8.615850e-47 |
| Msa0022640 | Msa0408630 | 0.811377 | 7.218718e-51 | -8.615850e-47 |
| Msa0043210 | Msa0408630 | 0.800330 | 1.515747e-48 | -8.615850e-47 |
| Msa0043940 | Msa0408630 | 0.801137 | 1.037744e-48 | -8.615850e-47 |
| Msa0050040 | Msa0408630 | 0.814934 | 1.196222e-51 | -8.615850e-47 |
| Msa0053110 | Msa0408630 | 0.821725 | 3.465451e-53 | -8.615850e-47 |
| Msa0057240 | Msa0408630 | 0.820915 | 5.328949e-53 | -8.615850e-47 |
| Msa0079770 | Msa0408630 | 0.802707 | 4.936855e-49 | -8.615850e-47 |
| Msa0095380 | Msa0408630 | 0.801197 | 1.008787e-48 | -8.615850e-47 |
| Msa0098440 | Msa0408630 | 0.810971 | 8.839665e-51 | -8.615850e-47 |
| Msa0102990 | Msa0408630 | 0.814450 | 1.531112e-51 | -8.615850e-47 |
| Msa0103000 | Msa0408630 | 0.820952 | 5.226970e-53 | -8.615850e-47 |
| Msa0106790 | Msa0408630 | 0.832575 | 8.744029e-56 | -8.615850e-47 |
| Msa0130010 | Msa0408630 | 0.820380 | 7.071150e-53 | -8.615850e-47 |
| Msa0137150 | Msa0408630 | 0.800884 | 1.168946e-48 | -8.615850e-47 |
| Msa0147560 | Msa0408630 | 0.820827 | 5.583931e-53 | -8.615850e-47 |
| Msa0149560 | Msa0408630 | 0.824616 | 7.327779e-54 | -8.615850e-47 |
| Msa0153420 | Msa0408630 | 0.806207 | 9.202198e-50 | -8.615850e-47 |
| Msa0161100 | Msa0408630 | 0.803229 | 3.851736e-49 | -8.615850e-47 |
| Msa0161680 | Msa0408630 | 0.812807 | 3.520721e-51 | -8.615850e-47 |
| Msa0182640 | Msa0408630 | 0.816741 | 4.730719e-52 | -8.615850e-47 |
| Msa0203030 | Msa0408630 | 0.832770 | 7.821590e-56 | -8.615850e-47 |
| Msa0203160 | Msa0408630 | 0.803283 | 3.753238e-49 | -8.615850e-47 |
| Msa0219190 | Msa0408630 | 0.862620 | 4.455566e-64 | -8.615850e-47 |
| Msa0222660 | Msa0408630 | 0.827157 | 1.827026e-54 | -8.615850e-47 |
| Msa0370600 | Msa0408630 | 0.821967 | 3.046214e-53 | -8.615850e-47 |
| Msa0371540 | Msa0408630 | 0.816795 | 4.598633e-52 | -8.615850e-47 |
| Msa0402820 | Msa0408630 | 0.813746 | 2.190185e-51 | -8.615850e-47 |
| Msa0408630 | Msa0408640 | 0.906302 | 1.714662e-80 | -8.615850e-47 |
| Msa0408630 | Msa0413930 | 0.804392 | 2.208397e-49 | -8.615850e-47 |
| Msa0408630 | Msa0418200 | 0.833518 | 5.092877e-56 | -8.615850e-47 |
| Msa0408630 | Msa0419970 | 0.821041 | 4.985548e-53 | -8.615850e-47 |
| Msa0408630 | Msa0436460 | 0.823127 | 1.637295e-53 | -8.615850e-47 |
| Msa0408630 | Msa0436500 | 0.845020 | 5.268935e-59 | -8.615850e-47 |
| Msa0408630 | Msa0444010 | 0.808097 | 3.661916e-50 | -8.615850e-47 |
| Msa0408630 | Msa0453520 | 0.922145 | 1.437181e-88 | -8.615850e-47 |
| Msa0408630 | Msa0464540 | 0.834027 | 3.799302e-56 | -8.615850e-47 |
| Msa0408630 | Msa0466060 | 0.808153 | 3.562705e-50 | -8.615850e-47 |
| Msa0408630 | Msa0484690 | 0.828614 | 8.152122e-55 | -8.615850e-47 |
| Msa0408630 | Msa0497420 | 0.814170 | 1.766019e-51 | -8.615850e-47 |
| Msa0408630 | Msa0517340 | 0.815010 | 1.150803e-51 | -8.615850e-47 |
| Msa0408630 | Msa0537920 | 0.841912 | 3.563284e-58 | -8.615850e-47 |
| Msa0408630 | Msa0538220 | 0.814592 | 1.424719e-51 | -8.615850e-47 |
| Msa0408630 | Msa0543850 | 0.827915 | 1.201957e-54 | -8.615850e-47 |
| Msa0408630 | Msa0561510 | 0.807225 | 5.607205e-50 | -8.615850e-47 |
| Msa0408630 | Msa0584130 | 0.830268 | 3.231344e-55 | -8.615850e-47 |
| Msa0408630 | Msa0625890 | 0.814584 | 1.430119e-51 | -8.615850e-47 |
| Msa0408630 | Msa0641250 | 0.804470 | 2.127387e-49 | -8.615850e-47 |
| Msa0408630 | Msa0649970 | 0.802270 | 6.074954e-49 | -8.615850e-47 |
| Msa0408630 | Msa0663090 | 0.806619 | 7.534376e-50 | -8.615850e-47 |
| Msa0408630 | Msa0663680 | 0.823092 | 1.668561e-53 | -8.615850e-47 |
| Msa0408630 | Msa0680150 | 0.820266 | 7.512662e-53 | -8.615850e-47 |
| Msa0408630 | Msa0688500 | 0.823592 | 1.274746e-53 | -8.615850e-47 |
| Msa0408630 | Msa0706370 | 0.812077 | 5.083298e-51 | -8.615850e-47 |
| Msa0408630 | Msa0707220 | 0.819754 | 9.837542e-53 | -8.615850e-47 |
| Msa0408630 | Msa0720270 | 0.808917 | 2.447215e-50 | -8.615850e-47 |
| Msa0408630 | Msa0734660 | 0.814401 | 1.570213e-51 | -8.615850e-47 |
| Msa0408630 | Msa0737190 | 0.812795 | 3.541035e-51 | -8.615850e-47 |
| Msa0408630 | Msa0747780 | 0.817321 | 3.504261e-52 | -8.615850e-47 |
| Msa0408630 | Msa0760840 | 0.814501 | 1.491699e-51 | -8.615850e-47 |
| Msa0408630 | Msa0760890 | 0.816702 | 4.824981e-52 | -8.615850e-47 |
| Msa0408630 | Msa0761580 | 0.805408 | 1.354224e-49 | -8.615850e-47 |
| Msa0408630 | Msa0764820 | 0.807708 | 4.429012e-50 | -8.615850e-47 |
| Msa0408630 | Msa0776220 | 0.815998 | 6.935076e-52 | -8.615850e-47 |
| Msa0408630 | Msa0778930 | 0.830849 | 2.328719e-55 | -8.615850e-47 |
| Msa0408630 | Msa0813670 | 0.816615 | 5.048397e-52 | -8.615850e-47 |
| Msa0408630 | Msa0816450 | 0.842408 | 2.633597e-58 | -8.615850e-47 |
| Msa0408630 | Msa0833040 | 0.806191 | 9.275098e-50 | -8.615850e-47 |
| Msa0408630 | Msa0844560 | 0.810045 | 1.401219e-50 | -8.615850e-47 |
| Msa0408630 | Msa0855310 | 0.806373 | 8.489825e-50 | -8.615850e-47 |
| Msa0408630 | Msa0856520 | 0.804097 | 2.543644e-49 | -8.615850e-47 |
| Msa0408630 | Msa0862100 | 0.806831 | 6.796243e-50 | -8.615850e-47 |
| Msa0408630 | Msa0867350 | 0.825257 | 5.174373e-54 | -8.615850e-47 |
| Msa0408630 | Msa0872310 | 0.818466 | 1.931231e-52 | -8.615850e-47 |
| Msa0408630 | Msa0873190 | 0.834737 | 2.521069e-56 | -8.615850e-47 |
| Msa0408630 | Msa0885060 | 0.802674 | 5.015527e-49 | -8.615850e-47 |
| Msa0408630 | Msa0896210 | 0.819662 | 1.032633e-52 | -8.615850e-47 |
| Msa0408630 | Msa0898730 | 0.814852 | 1.247486e-51 | -8.615850e-47 |
| Msa0408630 | Msa0905260 | 0.806767 | 7.009472e-50 | -8.615850e-47 |
| Msa0408630 | Msa0905550 | 0.820861 | 5.483134e-53 | -8.615850e-47 |
| Msa0408630 | Msa0905720 | 0.814117 | 1.814044e-51 | -8.615850e-47 |
| Msa0408630 | Msa0937240 | 0.833025 | 6.756496e-56 | -8.615850e-47 |
| Msa0408630 | Msa0937550 | 0.828784 | 7.416674e-55 | -8.615850e-47 |
| Msa0408630 | Msa0937940 | 0.802384 | 5.754395e-49 | -8.615850e-47 |
| Msa0408630 | Msa0938430 | 0.800393 | 1.471781e-48 | -8.615850e-47 |
| Msa0408630 | Msa0946320 | 0.810956 | 8.906770e-51 | -8.615850e-47 |
| Msa0408630 | Msa0974530 | 0.840752 | 7.194934e-58 | -8.615850e-47 |
| Msa0408630 | Msa0974750 | 0.801736 | 7.822803e-49 | -8.615850e-47 |
| Msa0408630 | Msa0975580 | 0.805925 | 1.055097e-49 | -8.615850e-47 |
| Msa0408630 | Msa0979510 | 0.805875 | 1.080921e-49 | -8.615850e-47 |
| Msa0408630 | Msa1014270 | 0.821074 | 4.897265e-53 | -8.615850e-47 |
| Msa0408630 | Msa1018790 | 0.825350 | 4.918214e-54 | -8.615850e-47 |
| Msa0408630 | Msa1020720 | 0.816727 | 4.764743e-52 | -8.615850e-47 |
| Msa0408630 | Msa1037900 | 0.824603 | 7.379371e-54 | -8.615850e-47 |
| Msa0408630 | Msa1037910 | 0.806493 | 8.009239e-50 | -8.615850e-47 |
| Msa0408630 | Msa1037920 | 0.821755 | 3.411399e-53 | -8.615850e-47 |
| Msa0408630 | Msa1041530 | 0.844254 | 8.473803e-59 | -8.615850e-47 |
| Msa0408630 | Msa1042670 | 0.805476 | 1.310322e-49 | -8.615850e-47 |
| Msa0408630 | Msa1049010 | 0.830228 | 3.304558e-55 | -8.615850e-47 |
| Msa0408630 | Msa1055260 | 0.819538 | 1.101897e-52 | -8.615850e-47 |
| Msa0408630 | Msa1055280 | 0.820807 | 5.641511e-53 | -8.615850e-47 |
| Msa0408630 | Msa1061500 | 0.811254 | 7.673439e-51 | -8.615850e-47 |
| Msa0408630 | Msa1066440 | 0.813433 | 2.566431e-51 | -8.615850e-47 |
| Msa0408630 | Msa1070420 | 0.885098 | 1.089696e-71 | -8.615850e-47 |
| Msa0408630 | Msa1081570 | 0.842041 | 3.293272e-58 | -8.615850e-47 |
| Msa0408630 | Msa1106810 | 0.810189 | 1.304590e-50 | -8.615850e-47 |
| Msa0408630 | Msa1116930 | 0.810296 | 1.236714e-50 | -8.615850e-47 |
| Msa0408630 | Msa1123880 | 0.845019 | 5.271670e-59 | -8.615850e-47 |
| Msa0408630 | Msa1127140 | 0.844119 | 9.211124e-59 | -8.615850e-47 |
| Msa0408630 | Msa1129960 | 0.827429 | 1.572223e-54 | -8.615850e-47 |
| Msa0408630 | Msa1129980 | 0.804766 | 1.845297e-49 | -8.615850e-47 |
| Msa0408630 | Msa1136230 | 0.805574 | 1.250308e-49 | -8.615850e-47 |
| Msa0408630 | Msa1139410 | 0.819925 | 8.988241e-53 | -8.615850e-47 |
| Msa0408630 | Msa1150230 | 0.813323 | 2.712841e-51 | -8.615850e-47 |
| Msa0408630 | Msa1166400 | 0.829442 | 5.136863e-55 | -8.615850e-47 |
| Msa0408630 | Msa1169990 | 0.800385 | 1.477640e-48 | -8.615850e-47 |
| Msa0408630 | Msa1176160 | 0.849592 | 2.929479e-60 | -8.615850e-47 |
| Msa0408630 | Msa1201160 | 0.808064 | 3.720743e-50 | -8.615850e-47 |
| Msa0408630 | Msa1228610 | 0.803526 | 3.341961e-49 | -8.615850e-47 |
| Msa0408630 | Msa1254190 | 0.803929 | 2.756398e-49 | -8.615850e-47 |
| Msa0408630 | Msa1272330 | 0.804476 | 2.121228e-49 | -8.615850e-47 |
| Msa0408630 | Msa1277400 | 0.809437 | 1.893491e-50 | -8.615850e-47 |
| Msa0408630 | Msa1296800 | 0.803084 | 4.126972e-49 | -8.615850e-47 |
| Msa0408630 | Msa1305310 | 0.801085 | 1.063270e-48 | -8.615850e-47 |
| Msa0408630 | Msa1305510 | 0.807891 | 4.050522e-50 | -8.615850e-47 |
| Msa0408630 | Msa1305750 | 0.819236 | 1.291298e-52 | -8.615850e-47 |
| Msa0408630 | Msa1307190 | 0.843031 | 1.798531e-58 | -8.615850e-47 |
| Msa0408630 | Msa1348950 | 0.818162 | 2.263976e-52 | -8.615850e-47 |
| Msa0408630 | Msa1355400 | 0.828157 | 1.050645e-54 | -8.615850e-47 |
| Msa0408630 | Msa1365020 | 0.804824 | 1.794825e-49 | -8.615850e-47 |
| Msa0408630 | Msa1374440 | 0.830675 | 2.569467e-55 | -8.615850e-47 |
| Msa0408630 | Msa1379990 | 0.829921 | 3.926858e-55 | -8.615850e-47 |
| Msa0408630 | Msa1414930 | 0.823803 | 1.137703e-53 | -8.615850e-47 |
| Msa0408630 | Msa1420060 | 0.882953 | 6.757311e-71 | -8.615850e-47 |
| Msa0408630 | Msa1421550 | 0.821772 | 3.379430e-53 | -8.615850e-47 |
| Msa0408630 | Msa1422270 | 0.822156 | 2.754625e-53 | -8.615850e-47 |
| Msa0408630 | Msa1429420 | 0.828007 | 1.141930e-54 | -8.615850e-47 |
| Msa0408630 | Msa1434020 | 0.806613 | 7.557227e-50 | -8.615850e-47 |
| Msa0408630 | Msa1437710 | 0.821493 | 3.922063e-53 | -8.615850e-47 |
| Msa0408630 | Msa1439120 | 0.802975 | 4.347333e-49 | -8.615850e-47 |
| Msa0408630 | Msa1440220 | 0.809727 | 1.640288e-50 | -8.615850e-47 |
| Msa0408630 | Msa1442290 | 0.814568 | 1.441842e-51 | -8.615850e-47 |
| Msa0408630 | Msa1444450 | 0.804557 | 2.040414e-49 | -8.615850e-47 |
| Msa0408630 | Msa1455660 | 0.800095 | 1.692649e-48 | -8.615850e-47 |
| Msa0408630 | Msa1461060 | 0.805085 | 1.582947e-49 | -8.615850e-47 |
| Msa0257680 | Msa0408630 | 0.846442 | 2.166431e-59 | -8.615850e-47 |
| Msa0264050 | Msa0408630 | 0.812623 | 3.863256e-51 | -8.615850e-47 |
| Msa0277530 | Msa0408630 | 0.811652 | 6.289706e-51 | -8.615850e-47 |
| Msa0298240 | Msa0408630 | 0.844836 | 5.906913e-59 | -8.615850e-47 |
| Msa0301980 | Msa0408630 | 0.832143 | 1.118225e-55 | -8.615850e-47 |
| Msa0313920 | Msa0408630 | 0.804077 | 2.568221e-49 | -8.615850e-47 |
| Msa0322830 | Msa0408630 | 0.815691 | 8.121593e-52 | -8.615850e-47 |
| Msa0323610 | Msa0408630 | 0.836973 | 6.836466e-57 | -8.615850e-47 |
| Msa0335270 | Msa0408630 | 0.838867 | 2.228655e-57 | -8.615850e-47 |
| Msa0339310 | Msa0408630 | 0.814050 | 1.876872e-51 | -8.615850e-47 |
| Msa0361250 | Msa0408630 | 0.916703 | 1.293596e-85 | -8.615850e-47 |
| Msa0361260 | Msa0408630 | 0.905627 | 3.516516e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 99 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGGAGGAGGTGGTGGTTT+TGG | 0.204853 | 3_2:+48566142 | Msa0408630:CDS |
| GGAGGTGGTGGAGGAGGATT+TGG | 0.214073 | 3_2:+48566382 | Msa0408630:CDS |
| CTTGGAGGTGGAAGCGGTTT+GGG | 0.256958 | 3_2:+48566250 | Msa0408630:CDS |
| GGTGGTGTTGGCGGAGGATC+AGG | 0.268818 | 3_2:+48566304 | Msa0408630:CDS |
| TTTGGTGGAGGTGCAGGAGG+AGG | 0.290797 | 3_2:+48566130 | Msa0408630:CDS |
| GGTGGCTCTGGAGGTGGATT+TGG | 0.297750 | 3_2:+48566196 | Msa0408630:CDS |
| AAGCTTGGGGTTAGTGATAA+GGG | 0.301032 | 3_2:+48566070 | Msa0408630:CDS |
| GGTGGCGGTGGTAGTGGAGG+AGG | 0.312152 | 3_2:+48566166 | Msa0408630:CDS |
| TTTGGAGGAGGATCAGGATT+TGG | 0.317441 | 3_2:+48566328 | Msa0408630:CDS |
| GGTGGAGCTGGAGGTGGAGT+TGG | 0.322109 | 3_2:+48566457 | Msa0408630:CDS |
| GGTGGAAGCGGTTTGGGTGG+AGG | 0.332132 | 3_2:+48566256 | Msa0408630:CDS |
| TTGGGTGGAGGTGGTGGCGG+TGG | 0.336365 | 3_2:+48566268 | Msa0408630:CDS |
| GGTGGAGGTGCAGGAGGAGG+TGG | 0.338908 | 3_2:+48566133 | Msa0408630:CDS |
| GGAGGATTTGGAGGTGGTGG+TGG | 0.339829 | 3_2:+48566394 | Msa0408630:CDS |
| GGAGGTGGTGGCGGTGGATT+CGG | 0.339869 | 3_2:+48566274 | Msa0408630:CDS |
| TTCTTTCGTCGTCCAGGGTT+TGG | 0.341444 | 3_2:+48566112 | Msa0408630:CDS |
| GGAGGTGCAGGAGGAGGTGG+TGG | 0.346229 | 3_2:+48566136 | Msa0408630:CDS |
| GGTGGTGGTGGCGGTGGACT+TGG | 0.348398 | 3_2:+48566406 | Msa0408630:CDS |
| ACTTGGAGGTGGAAGCGGTT+TGG | 0.348887 | 3_2:+48566249 | Msa0408630:CDS |
| GGTGGATTTGGTGCCGGTGC+TGG | 0.366301 | 3_2:+48566208 | Msa0408630:CDS |
| AGCGGTTTGGGTGGAGGTGG+TGG | 0.368147 | 3_2:+48566262 | Msa0408630:CDS |
| GGATTTGGAGGTGGTGGTGG+CGG | 0.368760 | 3_2:+48566397 | Msa0408630:CDS |
| GGCGGTGGACTTGGTGGTGC+AGG | 0.369353 | 3_2:+48566415 | Msa0408630:CDS |
| TTTGGTGGTGGAGCTGGAGG+TGG | 0.370741 | 3_2:+48566451 | Msa0408630:CDS |
| GGGATAGGTGGTGGCTCTGG+AGG | 0.373880 | 3_2:+48566187 | Msa0408630:CDS |
| GGACTAGGAGGAGGTGGTGG+AGG | 0.375243 | 3_2:+48566373 | Msa0408630:CDS |
| GGAGGGATAGGTGGTGGCTC+TGG | 0.376658 | 3_2:+48566184 | Msa0408630:CDS |
| TCAGGGTTTGGAGGAGGATC+AGG | 0.377455 | 3_2:+48566322 | Msa0408630:CDS |
| GGAAGCGGTTTGGGTGGAGG+TGG | 0.377528 | 3_2:+48566259 | Msa0408630:CDS |
| GAGCACCAAGAAGCACAAAA+AGG | 0.379740 | 3_2:-48566021 | None:intergenic |
| GCTGGAGGTGGAGTTGGAGG+TGG | 0.380269 | 3_2:+48566463 | Msa0408630:CDS |
| TTTGGTGGTGGCGGTGGTAG+TGG | 0.380494 | 3_2:+48566160 | Msa0408630:CDS |
| GGAGGAGGATTTGGAGGTGG+TGG | 0.384560 | 3_2:+48566391 | Msa0408630:CDS |
| CTAGGAGGAGGTGGTGGAGG+AGG | 0.386166 | 3_2:+48566376 | Msa0408630:CDS |
| CCAGGGTTTGGTGGAGGTGC+AGG | 0.387674 | 3_2:+48566124 | Msa0408630:CDS |
| GGAGCTGGAGGTGGAGTTGG+AGG | 0.387697 | 3_2:+48566460 | Msa0408630:CDS |
| AGTGGATTTGGTGGTGGAGC+TGG | 0.390237 | 3_2:+48566445 | Msa0408630:CDS |
| GCAGGAGCCGGTAGTGGATT+TGG | 0.393712 | 3_2:+48566433 | Msa0408630:CDS |
| GGCGGTGGATTCGGTGGAGG+AGG | 0.399221 | 3_2:+48566283 | Msa0408630:CDS |
| GCATTGATGCAAGGAAGCTT+GGG | 0.399616 | 3_2:+48566056 | Msa0408630:CDS |
| ATAGGTGGTGGCTCTGGAGG+TGG | 0.400925 | 3_2:+48566190 | Msa0408630:CDS |
| TTTGGAGGTGGTGGTGGCGG+TGG | 0.407712 | 3_2:+48566400 | Msa0408630:CDS |
| GTTGGCGGAGGATCAGGGTT+TGG | 0.411175 | 3_2:+48566310 | Msa0408630:CDS |
| GGTGGTGTCGGTGCTGGTAG+TGG | 0.419926 | 3_2:+48566352 | Msa0408630:CDS |
| GGTGGTGGAGGAGGATTTGG+AGG | 0.420178 | 3_2:+48566385 | Msa0408630:CDS |
| GCCGGTGCTGGTGGAGGAGC+AGG | 0.423633 | 3_2:+48566220 | Msa0408630:CDS |
| GGTTTGGGTGGAGGTGGTGG+CGG | 0.423947 | 3_2:+48566265 | Msa0408630:CDS |
| TTCGGTGGAGGAGGTGGTGT+TGG | 0.428134 | 3_2:+48566292 | Msa0408630:CDS |
| AAAACTTTCTTTCGTCGTCC+AGG | 0.428443 | 3_2:+48566106 | Msa0408630:CDS |
| AGTGGACTAGGAGGAGGTGG+TGG | 0.432132 | 3_2:+48566370 | Msa0408630:CDS |
| GGAGGAGCAGGAAGTGGACT+TGG | 0.432274 | 3_2:+48566232 | Msa0408630:CDS |
| TTTGGTGGTGGTGTCGGTGC+TGG | 0.433953 | 3_2:+48566346 | Msa0408630:CDS |
| GGTAGTGGAGGAGGGATAGG+TGG | 0.434423 | 3_2:+48566175 | Msa0408630:CDS |
| GGTGGCGGTGGATTCGGTGG+AGG | 0.436652 | 3_2:+48566280 | Msa0408630:CDS |
| GAAGCTTGGGGTTAGTGATA+AGG | 0.438720 | 3_2:+48566069 | Msa0408630:CDS |
| AGCATTGATGCAAGGAAGCT+TGG | 0.443496 | 3_2:+48566055 | Msa0408630:CDS |
| GGTGGTAGTGGAGGAGGGAT+AGG | 0.445402 | 3_2:+48566172 | Msa0408630:CDS |
| GGAGGAGGTGGTGTTGGCGG+AGG | 0.445599 | 3_2:+48566298 | Msa0408630:CDS |
| GGTGGAGGAGGATTTGGAGG+TGG | 0.446757 | 3_2:+48566388 | Msa0408630:CDS |
| GGTGGATTCGGTGGAGGAGG+TGG | 0.447734 | 3_2:+48566286 | Msa0408630:CDS |
| CGTCGTCCAGGGTTTGGTGG+AGG | 0.447933 | 3_2:+48566118 | Msa0408630:CDS |
| GTCGGTGCTGGTAGTGGACT+AGG | 0.449711 | 3_2:+48566358 | Msa0408630:CDS |
| TTTGGTGCCGGTGCTGGTGG+AGG | 0.462499 | 3_2:+48566214 | Msa0408630:CDS |
| GGACTTGGTGGTGCAGGAGC+CGG | 0.463629 | 3_2:+48566421 | Msa0408630:CDS |
| GGTGGAGGAGGTGGTGTTGG+CGG | 0.467528 | 3_2:+48566295 | Msa0408630:CDS |
| GGTGGTGGCGGTGGATTCGG+TGG | 0.474063 | 3_2:+48566277 | Msa0408630:CDS |
| GGAGGAGGATCAGGATTTGG+TGG | 0.476127 | 3_2:+48566331 | Msa0408630:CDS |
| GGTGGTGCAGGAGCCGGTAG+TGG | 0.478424 | 3_2:+48566427 | Msa0408630:CDS |
| GGAGGATCAGGATTTGGTGG+TGG | 0.478652 | 3_2:+48566334 | Msa0408630:CDS |
| GGTGGTGGCGGTGGACTTGG+TGG | 0.485302 | 3_2:+48566409 | Msa0408630:CDS |
| GCTGGTGGAGGAGCAGGAAG+TGG | 0.486671 | 3_2:+48566226 | Msa0408630:CDS |
| GGGTTTGGTGGAGGTGCAGG+AGG | 0.487071 | 3_2:+48566127 | Msa0408630:CDS |
| GCAGGAAGTGGACTTGGAGG+TGG | 0.493929 | 3_2:+48566238 | Msa0408630:CDS |
| GGATTTGGTGGTGGAGCTGG+AGG | 0.496714 | 3_2:+48566448 | Msa0408630:CDS |
| TCTGGAGGTGGATTTGGTGC+CGG | 0.500494 | 3_2:+48566202 | Msa0408630:CDS |
| TTTCGTCGTCCAGGGTTTGG+TGG | 0.501728 | 3_2:+48566115 | Msa0408630:CDS |
| GTGGCGGTGGTAGTGGAGGA+GGG | 0.508284 | 3_2:+48566167 | Msa0408630:CDS |
| GGATTTGGTGCCGGTGCTGG+TGG | 0.512540 | 3_2:+48566211 | Msa0408630:CDS |
| GGTGGTGGCGGTGGTAGTGG+AGG | 0.514100 | 3_2:+48566163 | Msa0408630:CDS |
| GTGGTGTTGGCGGAGGATCA+GGG | 0.516581 | 3_2:+48566305 | Msa0408630:CDS |
| AGTGGACTTGGAGGTGGAAG+CGG | 0.517360 | 3_2:+48566244 | Msa0408630:CDS |
| GGAGGATCAGGGTTTGGAGG+AGG | 0.518862 | 3_2:+48566316 | Msa0408630:CDS |
| GGTAGTGGACTAGGAGGAGG+TGG | 0.526326 | 3_2:+48566367 | Msa0408630:CDS |
| GCCGGTAGTGGATTTGGTGG+TGG | 0.527745 | 3_2:+48566439 | Msa0408630:CDS |
| AGTGGAGGAGGGATAGGTGG+TGG | 0.527759 | 3_2:+48566178 | Msa0408630:CDS |
| GCTGGTAGTGGACTAGGAGG+AGG | 0.529707 | 3_2:+48566364 | Msa0408630:CDS |
| GGAGCAGGAAGTGGACTTGG+AGG | 0.531460 | 3_2:+48566235 | Msa0408630:CDS |
| CCTGCACCTCCACCAAACCC+TGG | 0.534557 | 3_2:-48566124 | None:intergenic |
| TCAGGATTTGGTGGTGGTGT+CGG | 0.535845 | 3_2:+48566340 | Msa0408630:CDS |
| TCCTGCTCCTCCACCAGCAC+CGG | 0.537668 | 3_2:-48566221 | None:intergenic |
| AAACTTTCTTTCGTCGTCCA+GGG | 0.556589 | 3_2:+48566107 | Msa0408630:CDS |
| GGAGCCGGTAGTGGATTTGG+TGG | 0.590459 | 3_2:+48566436 | Msa0408630:CDS |
| AGCTTGGGGTTAGTGATAAG+GGG | 0.607938 | 3_2:+48566071 | Msa0408630:CDS |
| GGCGGAGGATCAGGGTTTGG+AGG | 0.608924 | 3_2:+48566313 | Msa0408630:CDS |
| TCCACCACCAAATCCACTAC+CGG | 0.609238 | 3_2:-48566440 | None:intergenic |
| GGAGGTGGAAGCGGTTTGGG+TGG | 0.621423 | 3_2:+48566253 | Msa0408630:CDS |
| CATTGATGCAAGGAAGCTTG+GGG | 0.640185 | 3_2:+48566057 | Msa0408630:CDS |
| TTTGCAGTAGCATTGATGCA+AGG | 0.645584 | 3_2:+48566047 | Msa0408630:CDS |
| GGTGCTGGTAGTGGACTAGG+AGG | 0.693551 | 3_2:+48566361 | Msa0408630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GTTCTCCTTTTTGTGCTTCT+TGG | + | chr3_2:48566016-48566035 | Msa0408630:CDS | 40.0% |
| !! | TTTGCAGTAGCATTGATGCA+AGG | + | chr3_2:48566047-48566066 | Msa0408630:CDS | 40.0% |
| ! | AAGCTTGGGGTTAGTGATAA+GGG | + | chr3_2:48566070-48566089 | Msa0408630:CDS | 40.0% |
| AAAACTTTCTTTCGTCGTCC+AGG | + | chr3_2:48566106-48566125 | Msa0408630:CDS | 40.0% | |
| AAACTTTCTTTCGTCGTCCA+GGG | + | chr3_2:48566107-48566126 | Msa0408630:CDS | 40.0% | |
| ! | GAGCACCAAGAAGCACAAAA+AGG | - | chr3_2:48566024-48566043 | None:intergenic | 45.0% |
| !! | AGCATTGATGCAAGGAAGCT+TGG | + | chr3_2:48566055-48566074 | Msa0408630:CDS | 45.0% |
| ! | GCATTGATGCAAGGAAGCTT+GGG | + | chr3_2:48566056-48566075 | Msa0408630:CDS | 45.0% |
| CATTGATGCAAGGAAGCTTG+GGG | + | chr3_2:48566057-48566076 | Msa0408630:CDS | 45.0% | |
| ! | GAAGCTTGGGGTTAGTGATA+AGG | + | chr3_2:48566069-48566088 | Msa0408630:CDS | 45.0% |
| ! | AGCTTGGGGTTAGTGATAAG+GGG | + | chr3_2:48566071-48566090 | Msa0408630:CDS | 45.0% |
| TTTGGAGGAGGATCAGGATT+TGG | + | chr3_2:48566328-48566347 | Msa0408630:CDS | 45.0% | |
| TTCTTTCGTCGTCCAGGGTT+TGG | + | chr3_2:48566112-48566131 | Msa0408630:CDS | 50.0% | |
| !! | TCAGGATTTGGTGGTGGTGT+CGG | + | chr3_2:48566340-48566359 | Msa0408630:CDS | 50.0% |
| TCCACCACCAAATCCACTAC+CGG | - | chr3_2:48566443-48566462 | None:intergenic | 50.0% | |
| TTTCGTCGTCCAGGGTTTGG+TGG | + | chr3_2:48566115-48566134 | Msa0408630:CDS | 55.0% | |
| !! | TCTGGAGGTGGATTTGGTGC+CGG | + | chr3_2:48566202-48566221 | Msa0408630:CDS | 55.0% |
| ! | AGTGGACTTGGAGGTGGAAG+CGG | + | chr3_2:48566244-48566263 | Msa0408630:CDS | 55.0% |
| ACTTGGAGGTGGAAGCGGTT+TGG | + | chr3_2:48566249-48566268 | Msa0408630:CDS | 55.0% | |
| CTTGGAGGTGGAAGCGGTTT+GGG | + | chr3_2:48566250-48566269 | Msa0408630:CDS | 55.0% | |
| TCAGGGTTTGGAGGAGGATC+AGG | + | chr3_2:48566322-48566341 | Msa0408630:CDS | 55.0% | |
| GGAGGAGGATCAGGATTTGG+TGG | + | chr3_2:48566331-48566350 | Msa0408630:CDS | 55.0% | |
| !! | GGAGGATCAGGATTTGGTGG+TGG | + | chr3_2:48566334-48566353 | Msa0408630:CDS | 55.0% |
| !! | AGTGGATTTGGTGGTGGAGC+TGG | + | chr3_2:48566445-48566464 | Msa0408630:CDS | 55.0% |
| ! | TTTGGTGGAGGTGCAGGAGG+AGG | + | chr3_2:48566130-48566149 | Msa0408630:CDS | 60.0% |
| !! | GCAGGAGGAGGTGGTGGTTT+TGG | + | chr3_2:48566142-48566161 | Msa0408630:CDS | 60.0% |
| !!! | GGAGGAGGTGGTGGTTTTGG+TGG | + | chr3_2:48566145-48566164 | Msa0408630:CDS | 60.0% |
| !!! | GGAGGTGGTGGTTTTGGTGG+TGG | + | chr3_2:48566148-48566167 | Msa0408630:CDS | 60.0% |
| !!! | GGTGGTGGTTTTGGTGGTGG+CGG | + | chr3_2:48566151-48566170 | Msa0408630:CDS | 60.0% |
| !! | TTTGGTGGTGGCGGTGGTAG+TGG | + | chr3_2:48566160-48566179 | Msa0408630:CDS | 60.0% |
| !! | GGTGGTAGTGGAGGAGGGAT+AGG | + | chr3_2:48566172-48566191 | Msa0408630:CDS | 60.0% |
| !! | GGTAGTGGAGGAGGGATAGG+TGG | + | chr3_2:48566175-48566194 | Msa0408630:CDS | 60.0% |
| AGTGGAGGAGGGATAGGTGG+TGG | + | chr3_2:48566178-48566197 | Msa0408630:CDS | 60.0% | |
| !! | ATAGGTGGTGGCTCTGGAGG+TGG | + | chr3_2:48566190-48566209 | Msa0408630:CDS | 60.0% |
| !! | GGTGGCTCTGGAGGTGGATT+TGG | + | chr3_2:48566196-48566215 | Msa0408630:CDS | 60.0% |
| ! | GGAGGAGCAGGAAGTGGACT+TGG | + | chr3_2:48566232-48566251 | Msa0408630:CDS | 60.0% |
| ! | GGAGCAGGAAGTGGACTTGG+AGG | + | chr3_2:48566235-48566254 | Msa0408630:CDS | 60.0% |
| ! | GCAGGAAGTGGACTTGGAGG+TGG | + | chr3_2:48566238-48566257 | Msa0408630:CDS | 60.0% |
| TTCGGTGGAGGAGGTGGTGT+TGG | + | chr3_2:48566292-48566311 | Msa0408630:CDS | 60.0% | |
| !! | GTGGTGTTGGCGGAGGATCA+GGG | + | chr3_2:48566305-48566324 | Msa0408630:CDS | 60.0% |
| GTTGGCGGAGGATCAGGGTT+TGG | + | chr3_2:48566310-48566329 | Msa0408630:CDS | 60.0% | |
| GGAGGATCAGGGTTTGGAGG+AGG | + | chr3_2:48566316-48566335 | Msa0408630:CDS | 60.0% | |
| !! | TTTGGTGGTGGTGTCGGTGC+TGG | + | chr3_2:48566346-48566365 | Msa0408630:CDS | 60.0% |
| !! | GTCGGTGCTGGTAGTGGACT+AGG | + | chr3_2:48566358-48566377 | Msa0408630:CDS | 60.0% |
| !! | GGTGCTGGTAGTGGACTAGG+AGG | + | chr3_2:48566361-48566380 | Msa0408630:CDS | 60.0% |
| !! | GCTGGTAGTGGACTAGGAGG+AGG | + | chr3_2:48566364-48566383 | Msa0408630:CDS | 60.0% |
| !! | GGTAGTGGACTAGGAGGAGG+TGG | + | chr3_2:48566367-48566386 | Msa0408630:CDS | 60.0% |
| !! | AGTGGACTAGGAGGAGGTGG+TGG | + | chr3_2:48566370-48566389 | Msa0408630:CDS | 60.0% |
| !! | GGAGGTGGTGGAGGAGGATT+TGG | + | chr3_2:48566382-48566401 | Msa0408630:CDS | 60.0% |
| !! | GGTGGTGGAGGAGGATTTGG+AGG | + | chr3_2:48566385-48566404 | Msa0408630:CDS | 60.0% |
| GGTGGAGGAGGATTTGGAGG+TGG | + | chr3_2:48566388-48566407 | Msa0408630:CDS | 60.0% | |
| GGAGGAGGATTTGGAGGTGG+TGG | + | chr3_2:48566391-48566410 | Msa0408630:CDS | 60.0% | |
| ! | GGAGGATTTGGAGGTGGTGG+TGG | + | chr3_2:48566394-48566413 | Msa0408630:CDS | 60.0% |
| !! | GGATTTGGAGGTGGTGGTGG+CGG | + | chr3_2:48566397-48566416 | Msa0408630:CDS | 60.0% |
| !! | GCAGGAGCCGGTAGTGGATT+TGG | + | chr3_2:48566433-48566452 | Msa0408630:CDS | 60.0% |
| !! | GGAGCCGGTAGTGGATTTGG+TGG | + | chr3_2:48566436-48566455 | Msa0408630:CDS | 60.0% |
| !! | GCCGGTAGTGGATTTGGTGG+TGG | + | chr3_2:48566439-48566458 | Msa0408630:CDS | 60.0% |
| !! | GGATTTGGTGGTGGAGCTGG+AGG | + | chr3_2:48566448-48566467 | Msa0408630:CDS | 60.0% |
| !! | TTTGGTGGTGGAGCTGGAGG+TGG | + | chr3_2:48566451-48566470 | Msa0408630:CDS | 60.0% |
| !! | CGTCGTCCAGGGTTTGGTGG+AGG | + | chr3_2:48566118-48566137 | Msa0408630:CDS | 65.0% |
| CCTGCACCTCCACCAAACCC+TGG | - | chr3_2:48566127-48566146 | None:intergenic | 65.0% | |
| !! | CCAGGGTTTGGTGGAGGTGC+AGG | + | chr3_2:48566124-48566143 | Msa0408630:CDS | 65.0% |
| !! | GGGTTTGGTGGAGGTGCAGG+AGG | + | chr3_2:48566127-48566146 | Msa0408630:CDS | 65.0% |
| !!! | GGTGGTTTTGGTGGTGGCGG+TGG | + | chr3_2:48566154-48566173 | Msa0408630:CDS | 65.0% |
| !! | GTGGCGGTGGTAGTGGAGGA+GGG | + | chr3_2:48566167-48566186 | Msa0408630:CDS | 65.0% |
| ! | GGAGGGATAGGTGGTGGCTC+TGG | + | chr3_2:48566184-48566203 | Msa0408630:CDS | 65.0% |
| !! | GGGATAGGTGGTGGCTCTGG+AGG | + | chr3_2:48566187-48566206 | Msa0408630:CDS | 65.0% |
| !! | GGTGGATTTGGTGCCGGTGC+TGG | + | chr3_2:48566208-48566227 | Msa0408630:CDS | 65.0% |
| !! | GGATTTGGTGCCGGTGCTGG+TGG | + | chr3_2:48566211-48566230 | Msa0408630:CDS | 65.0% |
| !! | TTTGGTGCCGGTGCTGGTGG+AGG | + | chr3_2:48566214-48566233 | Msa0408630:CDS | 65.0% |
| TCCTGCTCCTCCACCAGCAC+CGG | - | chr3_2:48566224-48566243 | None:intergenic | 65.0% | |
| GCTGGTGGAGGAGCAGGAAG+TGG | + | chr3_2:48566226-48566245 | Msa0408630:CDS | 65.0% | |
| ! | GGAGGTGGAAGCGGTTTGGG+TGG | + | chr3_2:48566253-48566272 | Msa0408630:CDS | 65.0% |
| ! | GGTGGAAGCGGTTTGGGTGG+AGG | + | chr3_2:48566256-48566275 | Msa0408630:CDS | 65.0% |
| ! | GGAAGCGGTTTGGGTGGAGG+TGG | + | chr3_2:48566259-48566278 | Msa0408630:CDS | 65.0% |
| ! | AGCGGTTTGGGTGGAGGTGG+TGG | + | chr3_2:48566262-48566281 | Msa0408630:CDS | 65.0% |
| ! | GGTTTGGGTGGAGGTGGTGG+CGG | + | chr3_2:48566265-48566284 | Msa0408630:CDS | 65.0% |
| !! | GGAGGTGGTGGCGGTGGATT+CGG | + | chr3_2:48566274-48566293 | Msa0408630:CDS | 65.0% |
| !! | GGTGGATTCGGTGGAGGAGG+TGG | + | chr3_2:48566286-48566305 | Msa0408630:CDS | 65.0% |
| ! | GGTGGAGGAGGTGGTGTTGG+CGG | + | chr3_2:48566295-48566314 | Msa0408630:CDS | 65.0% |
| !! | GGTGGTGTTGGCGGAGGATC+AGG | + | chr3_2:48566304-48566323 | Msa0408630:CDS | 65.0% |
| GGCGGAGGATCAGGGTTTGG+AGG | + | chr3_2:48566313-48566332 | Msa0408630:CDS | 65.0% | |
| !! | GGTGGTGTCGGTGCTGGTAG+TGG | + | chr3_2:48566352-48566371 | Msa0408630:CDS | 65.0% |
| ! | GGACTAGGAGGAGGTGGTGG+AGG | + | chr3_2:48566373-48566392 | Msa0408630:CDS | 65.0% |
| !! | CTAGGAGGAGGTGGTGGAGG+AGG | + | chr3_2:48566376-48566395 | Msa0408630:CDS | 65.0% |
| !! | TTTGGAGGTGGTGGTGGCGG+TGG | + | chr3_2:48566400-48566419 | Msa0408630:CDS | 65.0% |
| !! | GGACTTGGTGGTGCAGGAGC+CGG | + | chr3_2:48566421-48566440 | Msa0408630:CDS | 65.0% |
| GGTGGAGCTGGAGGTGGAGT+TGG | + | chr3_2:48566457-48566476 | Msa0408630:CDS | 65.0% | |
| GGAGCTGGAGGTGGAGTTGG+AGG | + | chr3_2:48566460-48566479 | Msa0408630:CDS | 65.0% | |
| GCTGGAGGTGGAGTTGGAGG+TGG | + | chr3_2:48566463-48566482 | Msa0408630:CDS | 65.0% | |
| ! | GGTGGAGGTGCAGGAGGAGG+TGG | + | chr3_2:48566133-48566152 | Msa0408630:CDS | 70.0% |
| ! | GGAGGTGCAGGAGGAGGTGG+TGG | + | chr3_2:48566136-48566155 | Msa0408630:CDS | 70.0% |
| !! | GGTGGTGGCGGTGGTAGTGG+AGG | + | chr3_2:48566163-48566182 | Msa0408630:CDS | 70.0% |
| !! | GGTGGCGGTGGTAGTGGAGG+AGG | + | chr3_2:48566166-48566185 | Msa0408630:CDS | 70.0% |
| !! | TTGGGTGGAGGTGGTGGCGG+TGG | + | chr3_2:48566268-48566287 | Msa0408630:CDS | 70.0% |
| !! | GGTGGTGGCGGTGGATTCGG+TGG | + | chr3_2:48566277-48566296 | Msa0408630:CDS | 70.0% |
| !! | GGTGGCGGTGGATTCGGTGG+AGG | + | chr3_2:48566280-48566299 | Msa0408630:CDS | 70.0% |
| !! | GGCGGTGGATTCGGTGGAGG+AGG | + | chr3_2:48566283-48566302 | Msa0408630:CDS | 70.0% |
| !! | GGAGGAGGTGGTGTTGGCGG+AGG | + | chr3_2:48566298-48566317 | Msa0408630:CDS | 70.0% |
| !! | GGTGGTGGTGGCGGTGGACT+TGG | + | chr3_2:48566406-48566425 | Msa0408630:CDS | 70.0% |
| !! | GGTGGTGGCGGTGGACTTGG+TGG | + | chr3_2:48566409-48566428 | Msa0408630:CDS | 70.0% |
| !! | GGCGGTGGACTTGGTGGTGC+AGG | + | chr3_2:48566415-48566434 | Msa0408630:CDS | 70.0% |
| GGTGGTGCAGGAGCCGGTAG+TGG | + | chr3_2:48566427-48566446 | Msa0408630:CDS | 70.0% | |
| !! | GCCGGTGCTGGTGGAGGAGC+AGG | + | chr3_2:48566220-48566239 | Msa0408630:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 48565998 | 48566495 | 48565998 | ID=Msa0408630;Name=Msa0408630 |
| chr3_2 | mRNA | 48565998 | 48566495 | 48565998 | ID=Msa0408630-mRNA-1;Parent=Msa0408630;Name=Msa0408630-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|165 |
| chr3_2 | exon | 48565998 | 48566495 | 48565998 | ID=Msa0408630-mRNA-1:exon:9428;Parent=Msa0408630-mRNA-1 |
| chr3_2 | CDS | 48565998 | 48566495 | 48565998 | ID=Msa0408630-mRNA-1:cds;Parent=Msa0408630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
