AlfalfaGEDB | Msa1345040

M. sativa cultivar zhongmu-4 / Msa1345040

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1345040	KEH19492.1	89.062	192	13	2	45	228	9	200	5.17e-121	352

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1345040	A0A072TQ21	89.062	192	13	2	45	228	9	200	2.47e-121	352

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006550	Msa1345040	0.803323	3.682202e-49	-8.615850e-47
Msa0029260	Msa1345040	0.818502	1.895573e-52	-8.615850e-47
Msa0054750	Msa1345040	0.826379	2.802283e-54	-8.615850e-47
Msa0057140	Msa1345040	0.837977	3.779491e-57	-8.615850e-47
Msa0084780	Msa1345040	0.802268	6.082450e-49	-8.615850e-47
Msa1345040	Msa1345070	0.819732	9.949862e-53	-8.615850e-47
Msa1345040	Msa1358610	-0.806495	8.003133e-50	-8.615850e-47
Msa1345040	Msa1359630	0.820243	7.603823e-53	-8.615850e-47
Msa1345040	Msa1364910	0.800478	1.414355e-48	-8.615850e-47
Msa1345040	Msa1365860	0.800280	1.551765e-48	-8.615850e-47
Msa1345040	Msa1440000	0.817955	2.521494e-52	-8.615850e-47
Msa1345040	Msa1452470	0.827657	1.385993e-54	-8.615850e-47
Msa1345040	Msa1461280	0.821246	4.470388e-53	-8.615850e-47
Msa1345040	Msa1465960	0.805233	1.473428e-49	-8.615850e-47
Msa0607510	Msa1345040	0.832459	9.337755e-56	-8.615850e-47
Msa0608710	Msa1345040	0.804838	1.782154e-49	-8.615850e-47
Msa0631350	Msa1345040	0.806197	9.246059e-50	-8.615850e-47
Msa0661210	Msa1345040	0.810081	1.375929e-50	-8.615850e-47
Msa0692940	Msa1345040	0.815103	1.097395e-51	-8.615850e-47
Msa0726830	Msa1345040	0.812446	4.221771e-51	-8.615850e-47
Msa0806920	Msa1345040	0.823784	1.149273e-53	-8.615850e-47
Msa0831870	Msa1345040	0.809399	1.929152e-50	-8.615850e-47
Msa0121820	Msa1345040	0.813554	2.413853e-51	-8.615850e-47
Msa0136390	Msa1345040	0.839180	1.848706e-57	-8.615850e-47
Msa0169300	Msa1345040	0.817909	2.582091e-52	-8.615850e-47
Msa0178990	Msa1345040	0.834647	2.655620e-56	-8.615850e-47
Msa0180120	Msa1345040	0.818837	1.591167e-52	-8.615850e-47
Msa0183460	Msa1345040	0.826457	2.684772e-54	-8.615850e-47
Msa0189520	Msa1345040	0.815710	8.042416e-52	-8.615850e-47
Msa0191050	Msa1345040	0.812345	4.443211e-51	-8.615850e-47
Msa0194480	Msa1345040	0.806675	7.332437e-50	-8.615850e-47
Msa0199690	Msa1345040	0.825908	3.626441e-54	-8.615850e-47
Msa0233350	Msa1345040	0.817341	3.467726e-52	-8.615850e-47
Msa0236270	Msa1345040	0.807950	3.933933e-50	-8.615850e-47
Msa1260130	Msa1345040	0.805794	1.123763e-49	-8.615850e-47
Msa1269300	Msa1345040	0.849645	2.831467e-60	-8.615850e-47
Msa1304820	Msa1345040	0.822777	1.975795e-53	-8.615850e-47
Msa0376690	Msa1345040	0.809520	1.817245e-50	-8.615850e-47
Msa0409270	Msa1345040	0.834020	3.815400e-56	-8.615850e-47
Msa0442200	Msa1345040	0.803629	3.181766e-49	-8.615850e-47
Msa0481810	Msa1345040	0.817419	3.330157e-52	-8.615850e-47
Msa1089840	Msa1345040	0.846871	1.653640e-59	-8.615850e-47
Msa1094430	Msa1345040	0.805019	1.633973e-49	-8.615850e-47
Msa1096230	Msa1345040	0.801827	7.492971e-49	-8.615850e-47
Msa0280430	Msa1345040	0.815555	8.706327e-52	-8.615850e-47
Msa0304590	Msa1345040	0.801756	7.746993e-49	-8.615850e-47
Msa0304660	Msa1345040	0.803390	3.566815e-49	-8.615850e-47
Msa0489610	Msa1345040	0.810884	9.232920e-51	-8.615850e-47
Msa0503200	Msa1345040	0.819735	9.934747e-53	-8.615850e-47
Msa0508590	Msa1345040	0.812124	4.963578e-51	-8.615850e-47
Msa0508630	Msa1345040	0.810655	1.034964e-50	-8.615850e-47
Msa0930140	Msa1345040	0.824517	7.731868e-54	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1345040	MtrunA17_Chr4g0027321	53.448	174	64	6	59	226	130	292	1.85e-47	158
Msa1345040	MtrunA17_Chr3g0119711	45.455	165	72	7	71	226	43	198	1.12e-30	112
Msa1345040	MtrunA17_Chr3g0120641	36.073	219	117	7	28	226	26	241	3.28e-21	88.6
Msa1345040	MtrunA17_Chr3g0120941	34.234	222	110	11	28	226	34	242	1.56e-17	78.6
Msa1345040	MtrunA17_Chr3g0120591	36.646	161	94	4	71	226	65	222	1.95e-17	78.2
Msa1345040	MtrunA17_Chr3g0120951	36.095	169	86	9	67	226	51	206	9.01e-17	75.9
Msa1345040	MtrunA17_Chr3g0120961	37.179	156	71	8	73	220	47	183	9.94e-13	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 75 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CACTAATGTTTCTGTATTAT+TGG	0.129896	tig0007057:+57760	Msa1345040:three_prime_UTR
GCTTTAAAAGTAATGTAATA+TGG	0.262097	tig0007057:-57503	None:intergenic
GTTGCCTAGGAAAGACTTCT+AGG	0.270033	tig0007057:+57673	Msa1345040:three_prime_UTR
GATTTCAGCCGTTTCGATTT+CGG	0.272727	tig0007057:-56790	None:intergenic
TGGTTCTTTCTATACGAATA+AGG	0.287403	tig0007057:+57029	Msa1345040:CDS
TCACTATACTCAGAATCTTC+TGG	0.339930	tig0007057:-56940	None:intergenic
GAAATCGAAACGGCTGAAAT+CGG	0.340115	tig0007057:+56792	Msa1345040:CDS
TCACGACGCTTATACCAATA+TGG	0.364498	tig0007057:-57006	None:intergenic
GGTTATGGTTATGCTTGATT+TGG	0.371613	tig0007057:+57651	Msa1345040:three_prime_UTR
AATTAATTAAATAAATATGA+TGG	0.373275	tig0007057:+57703	Msa1345040:three_prime_UTR
AATACACACCGCCATGGTTA+TGG	0.393191	tig0007057:+57636	Msa1345040:exon
ACTTTATCAAACACAAAAGT+TGG	0.407632	tig0007057:-57434	None:intergenic
GCTGAAATCGGAACCGCAAC+CGG	0.409087	tig0007057:+56915	Msa1345040:CDS
ATGAAACACTCTTTGACAAC+AGG	0.409120	tig0007057:-57602	None:intergenic
GTGTTTCAAAATGTCGAAAT+CGG	0.413339	tig0007057:+56759	Msa1345040:exon
GGGAGAAAATACAGACATAA+TGG	0.416671	tig0007057:-57850	None:intergenic
AAATCGAAACGGCTGAAATC+GGG	0.418006	tig0007057:+56793	Msa1345040:CDS
AACAACTTCTAGTCATTCAA+TGG	0.433010	tig0007057:-57871	None:intergenic
CTACTTCTTTATATGCTCCT+AGG	0.435411	tig0007057:+57480	Msa1345040:CDS
GAATCTTCTGGATCCGGTTG+CGG	0.438288	tig0007057:-56928	None:intergenic
TGCAGAGGGGTTTGAGAGTA+CGG	0.440533	tig0007057:-57277	None:intergenic
TAAGGCTTGGAGGGATCGTC+AGG	0.442047	tig0007057:+57047	Msa1345040:CDS
GGAGGAGAAACGGCTGAAAT+CGG	0.450703	tig0007057:+56903	Msa1345040:CDS
TTCATCTGTGGAGGAGGAGG+AGG	0.455235	tig0007057:+56885	Msa1345040:CDS
CAAAATGTCGAAATCGGAAC+AGG	0.457893	tig0007057:+56765	Msa1345040:exon
CACTGTCCACCACGTTGTGC+TGG	0.467693	tig0007057:+57218	Msa1345040:CDS
TACGCTGCAATACATGAGTC+TGG	0.467899	tig0007057:-57568	None:intergenic
TACTCAGAATCTTCTGGATC+CGG	0.470403	tig0007057:-56934	None:intergenic
AAAGTAATGTAATATGGCCT+AGG	0.487724	tig0007057:-57497	None:intergenic
CAATCAAACAAATATTAAGC+AGG	0.490074	tig0007057:+57319	Msa1345040:CDS
TAAAGCAAAAGCAGAAGCAA+AGG	0.500294	tig0007057:+57520	Msa1345040:CDS
CTTTCTATACGAATAAGGCT+TGG	0.501112	tig0007057:+57034	Msa1345040:CDS
ATTAATTAAATAAATATGAT+GGG	0.503492	tig0007057:+57704	Msa1345040:three_prime_UTR
TGAGGATGAGGAGGATAAGC+AGG	0.508361	tig0007057:+56846	Msa1345040:CDS
AGAAAGAAATGAAACTCTAA+AGG	0.508555	tig0007057:-57811	None:intergenic
ACACGATGAAGATTCATATG+AGG	0.514467	tig0007057:+56828	Msa1345040:CDS
TGTCTCATAATTCATGATTG+TGG	0.522113	tig0007057:+57931	Msa1345040:three_prime_UTR
TCTATACGAATAAGGCTTGG+AGG	0.522410	tig0007057:+57037	Msa1345040:CDS
AGATTCATCTGTGGAGGAGG+AGG	0.522683	tig0007057:+56882	Msa1345040:CDS
GTCTGGAAAGTTGTTAGAGC+AGG	0.523457	tig0007057:-57551	None:intergenic
GTTGTCAAGTGTACCCATCC+TGG	0.532074	tig0007057:+57455	Msa1345040:CDS
AAAGCAAAAGCAGAAGCAAA+GGG	0.538089	tig0007057:+57521	Msa1345040:CDS
TATGCTTGATTTGGTTGCCT+AGG	0.544430	tig0007057:+57660	Msa1345040:three_prime_UTR
CTATACGAATAAGGCTTGGA+GGG	0.544609	tig0007057:+57038	Msa1345040:CDS
ACAAGATTCATCTGTGGAGG+AGG	0.546974	tig0007057:+56879	Msa1345040:CDS
ACAACTTCTAGTCATTCAAT+GGG	0.547846	tig0007057:-57870	None:intergenic
TGAAGATTCATATGAGGATG+AGG	0.548643	tig0007057:+56834	Msa1345040:CDS
CACATCATCGCTTAAGTCGA+GGG	0.551344	tig0007057:-57252	None:intergenic
TACACCTAGAAGTCTTTCCT+AGG	0.557231	tig0007057:-57677	None:intergenic
AACAGGAACCGAAATCGAAA+CGG	0.558710	tig0007057:+56782	Msa1345040:CDS
CTTCAAAGCAGCATTGCAGA+GGG	0.559702	tig0007057:-57291	None:intergenic
GCATATAAAGAAGTAGCACC+AGG	0.567371	tig0007057:-57473	None:intergenic
TGTCCACCACGTTGTGCTGG+CGG	0.572730	tig0007057:+57221	Msa1345040:CDS
CATTAGTGACATAAATAACA+TGG	0.577507	tig0007057:-57745	None:intergenic
ATGAGACATGAATTTAGCAA+TGG	0.582250	tig0007057:-57916	None:intergenic
TATTGGTATAAGCGTCGTGA+TGG	0.589918	tig0007057:+57009	Msa1345040:CDS
TAAAGAAGTAGCACCAGGAT+GGG	0.590468	tig0007057:-57468	None:intergenic
GCACATCATCGCTTAAGTCG+AGG	0.599300	tig0007057:-57253	None:intergenic
ATAAAGAAGTAGCACCAGGA+TGG	0.610411	tig0007057:-57469	None:intergenic
CAGCACAACGTGGTGGACAG+TGG	0.610706	tig0007057:-57217	None:intergenic
GAAACAAGATTCATCTGTGG+AGG	0.613961	tig0007057:+56876	Msa1345040:CDS
AAATCTAATACACACCGCCA+TGG	0.616867	tig0007057:+57630	Msa1345040:exon
TCTTCAAAGCAGCATTGCAG+AGG	0.630589	tig0007057:-57292	None:intergenic
AGATTCATATGAGGATGAGG+AGG	0.633765	tig0007057:+56837	Msa1345040:CDS
ATCAAGCATAACCATAACCA+TGG	0.645954	tig0007057:-57647	None:intergenic
GAAACGGCTGAAATCGGGAT+CGG	0.652067	tig0007057:+56798	Msa1345040:CDS
AGAAGATTCTGAGTATAGTG+AGG	0.652619	tig0007057:+56942	Msa1345040:CDS
GCAAAAGCAGAAGCAAAGGG+AGG	0.667232	tig0007057:+57524	Msa1345040:CDS
TGAGTATAGTGAGGAAGACG+AGG	0.671624	tig0007057:+56951	Msa1345040:CDS
CATGAAACAAGATTCATCTG+TGG	0.677002	tig0007057:+56873	Msa1345040:CDS
ATACCGCCAGCACAACGTGG+TGG	0.689012	tig0007057:-57224	None:intergenic
ACATCATCGCTTAAGTCGAG+GGG	0.690101	tig0007057:-57251	None:intergenic
TTCAAAGCAGCATTGCAGAG+GGG	0.703047	tig0007057:-57290	None:intergenic
ACAATACCGCCAGCACAACG+TGG	0.758364	tig0007057:-57227	None:intergenic
AAGCATAACCATAACCATGG+CGG	0.768545	tig0007057:-57644	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CTTGTTTATTATTATTAATT+AGG	+	tig0007057:57409-57428	Msa1345040:intron	10.0%
!!	CTTGTTTATTATTATTAATT+AGG	+	tig0007057:57409-57428	Msa1345040:intron	10.0%
!!!	GCTTTAAAAGTAATGTAATA+TGG	-	tig0007057:57506-57525	None:intergenic	20.0%
!!!	GCTTTAAAAGTAATGTAATA+TGG	-	tig0007057:57506-57525	None:intergenic	20.0%
!!!	CACTTAATTTTGATTGATTC+TGG	+	tig0007057:57161-57180	Msa1345040:intron	25.0%
!	CAATCAAACAAATATTAAGC+AGG	+	tig0007057:57319-57338	Msa1345040:CDS	25.0%
!	ACTTTATCAAACACAAAAGT+TGG	-	tig0007057:57437-57456	None:intergenic	25.0%
!	CATTAGTGACATAAATAACA+TGG	-	tig0007057:57748-57767	None:intergenic	25.0%
!!	CACTAATGTTTCTGTATTAT+TGG	+	tig0007057:57760-57779	Msa1345040:three_prime_UTR	25.0%
!	AGAAAGAAATGAAACTCTAA+AGG	-	tig0007057:57814-57833	None:intergenic	25.0%
!!!	CACTTAATTTTGATTGATTC+TGG	+	tig0007057:57161-57180	Msa1345040:intron	25.0%
!	CAATCAAACAAATATTAAGC+AGG	+	tig0007057:57319-57338	Msa1345040:CDS	25.0%
!	ACTTTATCAAACACAAAAGT+TGG	-	tig0007057:57437-57456	None:intergenic	25.0%
!	CATTAGTGACATAAATAACA+TGG	-	tig0007057:57748-57767	None:intergenic	25.0%
!!	CACTAATGTTTCTGTATTAT+TGG	+	tig0007057:57760-57779	Msa1345040:three_prime_UTR	25.0%
!	AGAAAGAAATGAAACTCTAA+AGG	-	tig0007057:57814-57833	None:intergenic	25.0%
!!!	GATTTCGACATTTTGAAACA+CGG	-	tig0007057:56760-56779	None:intergenic	30.0%
	GTGTTTCAAAATGTCGAAAT+CGG	+	tig0007057:56759-56778	Msa1345040:exon	30.0%
!	ACAAAGACAGTTTTCCATAT+TGG	+	tig0007057:56992-57011	Msa1345040:CDS	30.0%
	TGGTTCTTTCTATACGAATA+AGG	+	tig0007057:57029-57048	Msa1345040:CDS	30.0%
	CAAACAAATATTAAGCAGGT+TGG	+	tig0007057:57323-57342	Msa1345040:intron	30.0%
	AAAGTAATGTAATATGGCCT+AGG	-	tig0007057:57500-57519	None:intergenic	30.0%
	ACAACTTCTAGTCATTCAAT+GGG	-	tig0007057:57873-57892	None:intergenic	30.0%
	AACAACTTCTAGTCATTCAA+TGG	-	tig0007057:57874-57893	None:intergenic	30.0%
	ATGAGACATGAATTTAGCAA+TGG	-	tig0007057:57919-57938	None:intergenic	30.0%
	TGTCTCATAATTCATGATTG+TGG	+	tig0007057:57931-57950	Msa1345040:three_prime_UTR	30.0%
!!!	GATTTCGACATTTTGAAACA+CGG	-	tig0007057:56760-56779	None:intergenic	30.0%
	GTGTTTCAAAATGTCGAAAT+CGG	+	tig0007057:56759-56778	Msa1345040:exon	30.0%
!	ACAAAGACAGTTTTCCATAT+TGG	+	tig0007057:56992-57011	Msa1345040:CDS	30.0%
	TGGTTCTTTCTATACGAATA+AGG	+	tig0007057:57029-57048	Msa1345040:CDS	30.0%
	CAAACAAATATTAAGCAGGT+TGG	+	tig0007057:57323-57342	Msa1345040:intron	30.0%
	AAAGTAATGTAATATGGCCT+AGG	-	tig0007057:57500-57519	None:intergenic	30.0%
	ACAACTTCTAGTCATTCAAT+GGG	-	tig0007057:57873-57892	None:intergenic	30.0%
	AACAACTTCTAGTCATTCAA+TGG	-	tig0007057:57874-57893	None:intergenic	30.0%
	ATGAGACATGAATTTAGCAA+TGG	-	tig0007057:57919-57938	None:intergenic	30.0%
	ACACGATGAAGATTCATATG+AGG	+	tig0007057:56828-56847	Msa1345040:CDS	35.0%
	TGAAGATTCATATGAGGATG+AGG	+	tig0007057:56834-56853	Msa1345040:CDS	35.0%
	CATGAAACAAGATTCATCTG+TGG	+	tig0007057:56873-56892	Msa1345040:CDS	35.0%
	TCACTATACTCAGAATCTTC+TGG	-	tig0007057:56943-56962	None:intergenic	35.0%
	AGAAGATTCTGAGTATAGTG+AGG	+	tig0007057:56942-56961	Msa1345040:CDS	35.0%
	CTTTCTATACGAATAAGGCT+TGG	+	tig0007057:57034-57053	Msa1345040:CDS	35.0%
	AGCAAACTAAGTGTAAGTGT+AGG	+	tig0007057:57099-57118	Msa1345040:intron	35.0%
	TGGACAATACAATACAAAGC+AGG	+	tig0007057:57181-57200	Msa1345040:intron	35.0%
	CTACTTCTTTATATGCTCCT+AGG	+	tig0007057:57480-57499	Msa1345040:CDS	35.0%
	TAAAGCAAAAGCAGAAGCAA+AGG	+	tig0007057:57520-57539	Msa1345040:CDS	35.0%
	AAAGCAAAAGCAGAAGCAAA+GGG	+	tig0007057:57521-57540	Msa1345040:CDS	35.0%
	ATGAAACACTCTTTGACAAC+AGG	-	tig0007057:57605-57624	None:intergenic	35.0%
	ATCAAGCATAACCATAACCA+TGG	-	tig0007057:57650-57669	None:intergenic	35.0%
	GGTTATGGTTATGCTTGATT+TGG	+	tig0007057:57651-57670	Msa1345040:three_prime_UTR	35.0%
	GGGAGAAAATACAGACATAA+TGG	-	tig0007057:57853-57872	None:intergenic	35.0%
	ACACGATGAAGATTCATATG+AGG	+	tig0007057:56828-56847	Msa1345040:CDS	35.0%
	TGAAGATTCATATGAGGATG+AGG	+	tig0007057:56834-56853	Msa1345040:CDS	35.0%
	CATGAAACAAGATTCATCTG+TGG	+	tig0007057:56873-56892	Msa1345040:CDS	35.0%
	TCACTATACTCAGAATCTTC+TGG	-	tig0007057:56943-56962	None:intergenic	35.0%
	AGAAGATTCTGAGTATAGTG+AGG	+	tig0007057:56942-56961	Msa1345040:CDS	35.0%
	CTTTCTATACGAATAAGGCT+TGG	+	tig0007057:57034-57053	Msa1345040:CDS	35.0%
	AGCAAACTAAGTGTAAGTGT+AGG	+	tig0007057:57099-57118	Msa1345040:intron	35.0%
	TGGACAATACAATACAAAGC+AGG	+	tig0007057:57181-57200	Msa1345040:intron	35.0%
	CTACTTCTTTATATGCTCCT+AGG	+	tig0007057:57480-57499	Msa1345040:CDS	35.0%
	TAAAGCAAAAGCAGAAGCAA+AGG	+	tig0007057:57520-57539	Msa1345040:CDS	35.0%
	AAAGCAAAAGCAGAAGCAAA+GGG	+	tig0007057:57521-57540	Msa1345040:CDS	35.0%
	ATGAAACACTCTTTGACAAC+AGG	-	tig0007057:57605-57624	None:intergenic	35.0%
	ATCAAGCATAACCATAACCA+TGG	-	tig0007057:57650-57669	None:intergenic	35.0%
	GGTTATGGTTATGCTTGATT+TGG	+	tig0007057:57651-57670	Msa1345040:three_prime_UTR	35.0%
	GGGAGAAAATACAGACATAA+TGG	-	tig0007057:57853-57872	None:intergenic	35.0%
!!!	TCGACATTTTGAAACACGGA+AGG	-	tig0007057:56756-56775	None:intergenic	40.0%
	CAAAATGTCGAAATCGGAAC+AGG	+	tig0007057:56765-56784	Msa1345040:exon	40.0%
	AACAGGAACCGAAATCGAAA+CGG	+	tig0007057:56782-56801	Msa1345040:CDS	40.0%
	GATTTCAGCCGTTTCGATTT+CGG	-	tig0007057:56793-56812	None:intergenic	40.0%
	GAAATCGAAACGGCTGAAAT+CGG	+	tig0007057:56792-56811	Msa1345040:CDS	40.0%
	AAATCGAAACGGCTGAAATC+GGG	+	tig0007057:56793-56812	Msa1345040:CDS	40.0%
	AGATTCATATGAGGATGAGG+AGG	+	tig0007057:56837-56856	Msa1345040:CDS	40.0%
	GAAACAAGATTCATCTGTGG+AGG	+	tig0007057:56876-56895	Msa1345040:CDS	40.0%
	TACTCAGAATCTTCTGGATC+CGG	-	tig0007057:56937-56956	None:intergenic	40.0%
	TCACGACGCTTATACCAATA+TGG	-	tig0007057:57009-57028	None:intergenic	40.0%
!	TATTGGTATAAGCGTCGTGA+TGG	+	tig0007057:57009-57028	Msa1345040:CDS	40.0%
	TCTATACGAATAAGGCTTGG+AGG	+	tig0007057:57037-57056	Msa1345040:CDS	40.0%
	CTATACGAATAAGGCTTGGA+GGG	+	tig0007057:57038-57057	Msa1345040:CDS	40.0%
	TAAAGAAGTAGCACCAGGAT+GGG	-	tig0007057:57471-57490	None:intergenic	40.0%
	ATAAAGAAGTAGCACCAGGA+TGG	-	tig0007057:57472-57491	None:intergenic	40.0%
	GCATATAAAGAAGTAGCACC+AGG	-	tig0007057:57476-57495	None:intergenic	40.0%
	AAATCTAATACACACCGCCA+TGG	+	tig0007057:57630-57649	Msa1345040:exon	40.0%
	AAGCATAACCATAACCATGG+CGG	-	tig0007057:57647-57666	None:intergenic	40.0%
!!	TATGCTTGATTTGGTTGCCT+AGG	+	tig0007057:57660-57679	Msa1345040:three_prime_UTR	40.0%
	TACACCTAGAAGTCTTTCCT+AGG	-	tig0007057:57680-57699	None:intergenic	40.0%
!!!	TCGACATTTTGAAACACGGA+AGG	-	tig0007057:56756-56775	None:intergenic	40.0%
	CAAAATGTCGAAATCGGAAC+AGG	+	tig0007057:56765-56784	Msa1345040:exon	40.0%
	AACAGGAACCGAAATCGAAA+CGG	+	tig0007057:56782-56801	Msa1345040:CDS	40.0%
	GATTTCAGCCGTTTCGATTT+CGG	-	tig0007057:56793-56812	None:intergenic	40.0%
	GAAATCGAAACGGCTGAAAT+CGG	+	tig0007057:56792-56811	Msa1345040:CDS	40.0%
	AAATCGAAACGGCTGAAATC+GGG	+	tig0007057:56793-56812	Msa1345040:CDS	40.0%
	AGATTCATATGAGGATGAGG+AGG	+	tig0007057:56837-56856	Msa1345040:CDS	40.0%
	GAAACAAGATTCATCTGTGG+AGG	+	tig0007057:56876-56895	Msa1345040:CDS	40.0%
	TACTCAGAATCTTCTGGATC+CGG	-	tig0007057:56937-56956	None:intergenic	40.0%
	TCACGACGCTTATACCAATA+TGG	-	tig0007057:57009-57028	None:intergenic	40.0%
!	TATTGGTATAAGCGTCGTGA+TGG	+	tig0007057:57009-57028	Msa1345040:CDS	40.0%
	TCTATACGAATAAGGCTTGG+AGG	+	tig0007057:57037-57056	Msa1345040:CDS	40.0%
	CTATACGAATAAGGCTTGGA+GGG	+	tig0007057:57038-57057	Msa1345040:CDS	40.0%
	TAAAGAAGTAGCACCAGGAT+GGG	-	tig0007057:57471-57490	None:intergenic	40.0%
	ATAAAGAAGTAGCACCAGGA+TGG	-	tig0007057:57472-57491	None:intergenic	40.0%
	GCATATAAAGAAGTAGCACC+AGG	-	tig0007057:57476-57495	None:intergenic	40.0%
	AAATCTAATACACACCGCCA+TGG	+	tig0007057:57630-57649	Msa1345040:exon	40.0%
	AAGCATAACCATAACCATGG+CGG	-	tig0007057:57647-57666	None:intergenic	40.0%
!!	TATGCTTGATTTGGTTGCCT+AGG	+	tig0007057:57660-57679	Msa1345040:three_prime_UTR	40.0%
	TACACCTAGAAGTCTTTCCT+AGG	-	tig0007057:57680-57699	None:intergenic	40.0%
	ACAAGATTCATCTGTGGAGG+AGG	+	tig0007057:56879-56898	Msa1345040:CDS	45.0%
	TGAGTATAGTGAGGAAGACG+AGG	+	tig0007057:56951-56970	Msa1345040:CDS	45.0%
	ACATCATCGCTTAAGTCGAG+GGG	-	tig0007057:57254-57273	None:intergenic	45.0%
	CACATCATCGCTTAAGTCGA+GGG	-	tig0007057:57255-57274	None:intergenic	45.0%
	TTCAAAGCAGCATTGCAGAG+GGG	-	tig0007057:57293-57312	None:intergenic	45.0%
	CTTCAAAGCAGCATTGCAGA+GGG	-	tig0007057:57294-57313	None:intergenic	45.0%
	TCTTCAAAGCAGCATTGCAG+AGG	-	tig0007057:57295-57314	None:intergenic	45.0%
	GTCTGGAAAGTTGTTAGAGC+AGG	-	tig0007057:57554-57573	None:intergenic	45.0%
	TACGCTGCAATACATGAGTC+TGG	-	tig0007057:57571-57590	None:intergenic	45.0%
	AATACACACCGCCATGGTTA+TGG	+	tig0007057:57636-57655	Msa1345040:exon	45.0%
	GTTGCCTAGGAAAGACTTCT+AGG	+	tig0007057:57673-57692	Msa1345040:three_prime_UTR	45.0%
	ACAAGATTCATCTGTGGAGG+AGG	+	tig0007057:56879-56898	Msa1345040:CDS	45.0%
	TGAGTATAGTGAGGAAGACG+AGG	+	tig0007057:56951-56970	Msa1345040:CDS	45.0%
	ACATCATCGCTTAAGTCGAG+GGG	-	tig0007057:57254-57273	None:intergenic	45.0%
	CACATCATCGCTTAAGTCGA+GGG	-	tig0007057:57255-57274	None:intergenic	45.0%
	TTCAAAGCAGCATTGCAGAG+GGG	-	tig0007057:57293-57312	None:intergenic	45.0%
	CTTCAAAGCAGCATTGCAGA+GGG	-	tig0007057:57294-57313	None:intergenic	45.0%
	TCTTCAAAGCAGCATTGCAG+AGG	-	tig0007057:57295-57314	None:intergenic	45.0%
	GTCTGGAAAGTTGTTAGAGC+AGG	-	tig0007057:57554-57573	None:intergenic	45.0%
	TACGCTGCAATACATGAGTC+TGG	-	tig0007057:57571-57590	None:intergenic	45.0%
	AATACACACCGCCATGGTTA+TGG	+	tig0007057:57636-57655	Msa1345040:exon	45.0%
	GTTGCCTAGGAAAGACTTCT+AGG	+	tig0007057:57673-57692	Msa1345040:three_prime_UTR	45.0%
!!	TTGTTTATTATTATTAATTA+GGG	+	tig0007057:57410-57429	Msa1345040:intron	5.0%
!!	AATTAATTAAATAAATATGA+TGG	+	tig0007057:57703-57722	Msa1345040:three_prime_UTR	5.0%
!!	ATTAATTAAATAAATATGAT+GGG	+	tig0007057:57704-57723	Msa1345040:three_prime_UTR	5.0%
!!	TTGTTTATTATTATTAATTA+GGG	+	tig0007057:57410-57429	Msa1345040:intron	5.0%
!!	AATTAATTAAATAAATATGA+TGG	+	tig0007057:57703-57722	Msa1345040:three_prime_UTR	5.0%
!!	ATTAATTAAATAAATATGAT+GGG	+	tig0007057:57704-57723	Msa1345040:three_prime_UTR	5.0%
	GAAACGGCTGAAATCGGGAT+CGG	+	tig0007057:56798-56817	Msa1345040:CDS	50.0%
	TGAGGATGAGGAGGATAAGC+AGG	+	tig0007057:56846-56865	Msa1345040:CDS	50.0%
	AGATTCATCTGTGGAGGAGG+AGG	+	tig0007057:56882-56901	Msa1345040:CDS	50.0%
	GGAGGAGAAACGGCTGAAAT+CGG	+	tig0007057:56903-56922	Msa1345040:CDS	50.0%
	GAATCTTCTGGATCCGGTTG+CGG	-	tig0007057:56931-56950	None:intergenic	50.0%
	GCACATCATCGCTTAAGTCG+AGG	-	tig0007057:57256-57275	None:intergenic	50.0%
	TGCAGAGGGGTTTGAGAGTA+CGG	-	tig0007057:57280-57299	None:intergenic	50.0%
	GTTGTCAAGTGTACCCATCC+TGG	+	tig0007057:57455-57474	Msa1345040:CDS	50.0%
	GCAAAAGCAGAAGCAAAGGG+AGG	+	tig0007057:57524-57543	Msa1345040:CDS	50.0%
	GAAACGGCTGAAATCGGGAT+CGG	+	tig0007057:56798-56817	Msa1345040:CDS	50.0%
	TGAGGATGAGGAGGATAAGC+AGG	+	tig0007057:56846-56865	Msa1345040:CDS	50.0%
	AGATTCATCTGTGGAGGAGG+AGG	+	tig0007057:56882-56901	Msa1345040:CDS	50.0%
	GGAGGAGAAACGGCTGAAAT+CGG	+	tig0007057:56903-56922	Msa1345040:CDS	50.0%
	GAATCTTCTGGATCCGGTTG+CGG	-	tig0007057:56931-56950	None:intergenic	50.0%
	GCACATCATCGCTTAAGTCG+AGG	-	tig0007057:57256-57275	None:intergenic	50.0%
	TGCAGAGGGGTTTGAGAGTA+CGG	-	tig0007057:57280-57299	None:intergenic	50.0%
	GTTGTCAAGTGTACCCATCC+TGG	+	tig0007057:57455-57474	Msa1345040:CDS	50.0%
	GCAAAAGCAGAAGCAAAGGG+AGG	+	tig0007057:57524-57543	Msa1345040:CDS	50.0%
	TTCATCTGTGGAGGAGGAGG+AGG	+	tig0007057:56885-56904	Msa1345040:CDS	55.0%
	TGGAGGAGGAGGAGGAGAAA+CGG	+	tig0007057:56893-56912	Msa1345040:CDS	55.0%
	GCTGAAATCGGAACCGCAAC+CGG	+	tig0007057:56915-56934	Msa1345040:CDS	55.0%
	TAAGGCTTGGAGGGATCGTC+AGG	+	tig0007057:57047-57066	Msa1345040:CDS	55.0%
	ACAATACCGCCAGCACAACG+TGG	-	tig0007057:57230-57249	None:intergenic	55.0%
	TTCATCTGTGGAGGAGGAGG+AGG	+	tig0007057:56885-56904	Msa1345040:CDS	55.0%
	TGGAGGAGGAGGAGGAGAAA+CGG	+	tig0007057:56893-56912	Msa1345040:CDS	55.0%
	GCTGAAATCGGAACCGCAAC+CGG	+	tig0007057:56915-56934	Msa1345040:CDS	55.0%
	TAAGGCTTGGAGGGATCGTC+AGG	+	tig0007057:57047-57066	Msa1345040:CDS	55.0%
	ACAATACCGCCAGCACAACG+TGG	-	tig0007057:57230-57249	None:intergenic	55.0%
!!	CAGCACAACGTGGTGGACAG+TGG	-	tig0007057:57220-57239	None:intergenic	60.0%
	CACTGTCCACCACGTTGTGC+TGG	+	tig0007057:57218-57237	Msa1345040:CDS	60.0%
	TGTCCACCACGTTGTGCTGG+CGG	+	tig0007057:57221-57240	Msa1345040:CDS	60.0%
	ATACCGCCAGCACAACGTGG+TGG	-	tig0007057:57227-57246	None:intergenic	60.0%
!!	CAGCACAACGTGGTGGACAG+TGG	-	tig0007057:57220-57239	None:intergenic	60.0%
	CACTGTCCACCACGTTGTGC+TGG	+	tig0007057:57218-57237	Msa1345040:CDS	60.0%
	TGTCCACCACGTTGTGCTGG+CGG	+	tig0007057:57221-57240	Msa1345040:CDS	60.0%
	ATACCGCCAGCACAACGTGG+TGG	-	tig0007057:57227-57246	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
tig0007057	gene	56719	57953	56719	ID=Msa1345040;Name=Msa1345040
tig0007057	mRNA	56719	57953	56719	ID=Msa1345040-mRNA-1;Parent=Msa1345040;Name=Msa1345040-mRNA-1;_AED=0.34;_eAED=0.34;_QI=50\|1\|1\|1\|1\|1\|3\|316\|228
tig0007057	exon	56719	57110	56719	ID=Msa1345040-mRNA-1:exon:4789;Parent=Msa1345040-mRNA-1
tig0007057	exon	57203	57340	57203	ID=Msa1345040-mRNA-1:exon:4790;Parent=Msa1345040-mRNA-1
tig0007057	exon	57431	57953	57431	ID=Msa1345040-mRNA-1:exon:4791;Parent=Msa1345040-mRNA-1
tig0007057	five_prime_UTR	56719	56768	56719	ID=Msa1345040-mRNA-1:five_prime_utr;Parent=Msa1345040-mRNA-1
tig0007057	CDS	56769	57110	56769	ID=Msa1345040-mRNA-1:cds;Parent=Msa1345040-mRNA-1
tig0007057	CDS	57203	57340	57203	ID=Msa1345040-mRNA-1:cds;Parent=Msa1345040-mRNA-1
tig0007057	CDS	57431	57637	57431	ID=Msa1345040-mRNA-1:cds;Parent=Msa1345040-mRNA-1
tig0007057	three_prime_UTR	57638	57953	57638	ID=Msa1345040-mRNA-1:three_prime_utr;Parent=Msa1345040-mRNA-1

Gene Sequence

>Msa1345040

ATGTCGAAATCGGAACAGGAACCGAAATCGAAACGGCTGAAATCGGGATCGGAACAGAAACACGATGAAGATTCATATGAGGATGAGGAGGATAAGCAGGAATTCATGAAACAAGATTCATCTGTGGAGGAGGAGGAGGAGAAACGGCTGAAATCGGAACCGCAACCGGATCCAGAAGATTCTGAGTATAGTGAGGAAGACGAGGATAACTTGTCTGTGCATGACAAAGACAGTTTTCCATATTGGTATAAGCGTCGTGATGGTTCTTTCTATACGAATAAGGCTTGGAGGGATCGTCAGGCTAAAATTCTTGACTATAAAAATCGCTCTAGCAAACTAAGTGTCTACGATGCTATCCACTGTCCACCACGTTGTGCTGGCGGTATTGTACCCCTCGACTTAAGCGATGATGTGCTCCGTACTCTCAAACCCCTCTGCAATGCTGCTTTGAAGATTTACAATCAAACAAATATTAAGCAGGGTCCAACTTTTGTGTTTGATAAAGTTGTCAAGTGTACCCATCCTGGTGCTACTTCTTTATATGCTCCTAGGCCATATTACATTACTTTTAAAGCAAAAGCAGAAGCAAAGGGAGGAAGACCTGCTCTAACAACTTTCCAGACTCATGTATTGCAGCGTAAAGATAAAGATCCTGTTGTCAAAGAGTGTTTCATTAAAAAAATCTAA

Protein sequence

>Msa1345040

MSKSEQEPKSKRLKSGSEQKHDEDSYEDEEDKQEFMKQDSSVEEEEEKRLKSEPQPDPEDSEYSEEDEDNLSVHDKDSFPYWYKRRDGSFYTNKAWRDRQAKILDYKNRSSKLSVYDAIHCPPRCAGGIVPLDLSDDVLRTLKPLCNAALKIYNQTNIKQGPTFVFDKVVKCTHPGATSLYAPRPYYITFKAKAEAKGGRPALTTFQTHVLQRKDKDPVVKECFIKKI*