Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084780 | XP_024641064.1 | 93.093 | 333 | 12 | 1 | 1 | 333 | 1 | 322 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084780 | sp|Q8LBW2|OTU9_ARATH | 47.734 | 331 | 144 | 7 | 4 | 331 | 2 | 306 | 1.50e-88 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084780 | G7I502 | 93.093 | 333 | 12 | 1 | 1 | 333 | 1 | 322 | 0.0 | 639 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004860 | Msa0084780 | 0.830879 | 2.289583e-55 | -8.615850e-47 |
| Msa0004920 | Msa0084780 | 0.817664 | 2.932171e-52 | -8.615850e-47 |
| Msa0006550 | Msa0084780 | 0.811751 | 5.984894e-51 | -8.615850e-47 |
| Msa0020930 | Msa0084780 | 0.814928 | 1.200228e-51 | -8.615850e-47 |
| Msa0051770 | Msa0084780 | 0.811792 | 5.863928e-51 | -8.615850e-47 |
| Msa0056030 | Msa0084780 | 0.804336 | 2.268990e-49 | -8.615850e-47 |
| Msa0057140 | Msa0084780 | 0.809770 | 1.605489e-50 | -8.615850e-47 |
| Msa0083280 | Msa0084780 | 0.817923 | 2.563858e-52 | -8.615850e-47 |
| Msa0084780 | Msa0086420 | 0.815401 | 9.420640e-52 | -8.615850e-47 |
| Msa0084780 | Msa0130900 | 0.863583 | 2.244115e-64 | -8.615850e-47 |
| Msa0084780 | Msa0159930 | 0.803185 | 3.932392e-49 | -8.615850e-47 |
| Msa0084780 | Msa0191050 | 0.835576 | 1.548045e-56 | -8.615850e-47 |
| Msa0084780 | Msa0217680 | 0.836985 | 6.789454e-57 | -8.615850e-47 |
| Msa0084780 | Msa0233350 | 0.841570 | 4.385572e-58 | -8.615850e-47 |
| Msa0084780 | Msa0264930 | 0.810040 | 1.404756e-50 | -8.615850e-47 |
| Msa0084780 | Msa0265380 | 0.802808 | 4.706340e-49 | -8.615850e-47 |
| Msa0084780 | Msa0287410 | 0.804588 | 2.009727e-49 | -8.615850e-47 |
| Msa0084780 | Msa0302980 | 0.801364 | 9.323224e-49 | -8.615850e-47 |
| Msa0084780 | Msa0329350 | 0.800688 | 1.281901e-48 | -8.615850e-47 |
| Msa0084780 | Msa0359560 | 0.801193 | 1.010531e-48 | -8.615850e-47 |
| Msa0084780 | Msa0379640 | 0.816300 | 5.936197e-52 | -8.615850e-47 |
| Msa0084780 | Msa0394340 | 0.816450 | 5.495063e-52 | -8.615850e-47 |
| Msa0084780 | Msa0399340 | 0.803378 | 3.587222e-49 | -8.615850e-47 |
| Msa0084780 | Msa0409270 | 0.800402 | 1.465561e-48 | -8.615850e-47 |
| Msa0084780 | Msa0433360 | 0.813412 | 2.592847e-51 | -8.615850e-47 |
| Msa0084780 | Msa0433640 | 0.808745 | 2.663705e-50 | -8.615850e-47 |
| Msa0084780 | Msa0442200 | 0.838191 | 3.329570e-57 | -8.615850e-47 |
| Msa0084780 | Msa0442610 | 0.806956 | 6.392586e-50 | -8.615850e-47 |
| Msa0084780 | Msa0450490 | 0.814012 | 1.913665e-51 | -8.615850e-47 |
| Msa0084780 | Msa0464900 | 0.823795 | 1.142403e-53 | -8.615850e-47 |
| Msa0084780 | Msa0477080 | 0.847196 | 1.347359e-59 | -8.615850e-47 |
| Msa0084780 | Msa0477130 | -0.802571 | 5.266746e-49 | -8.615850e-47 |
| Msa0084780 | Msa0481810 | 0.808062 | 3.724114e-50 | -8.615850e-47 |
| Msa0084780 | Msa0489610 | 0.843510 | 1.340696e-58 | -8.615850e-47 |
| Msa0084780 | Msa0493630 | 0.836584 | 8.590034e-57 | -8.615850e-47 |
| Msa0084780 | Msa0503200 | 0.812337 | 4.460655e-51 | -8.615850e-47 |
| Msa0084780 | Msa0521430 | 0.824434 | 8.089050e-54 | -8.615850e-47 |
| Msa0084780 | Msa0521540 | 0.805483 | 1.306474e-49 | -8.615850e-47 |
| Msa0084780 | Msa0555200 | 0.844045 | 9.639467e-59 | -8.615850e-47 |
| Msa0084780 | Msa0608710 | 0.856211 | 3.749203e-62 | -8.615850e-47 |
| Msa0084780 | Msa0638070 | 0.800067 | 1.714783e-48 | -8.615850e-47 |
| Msa0084780 | Msa0649350 | 0.803964 | 2.710693e-49 | -8.615850e-47 |
| Msa0084780 | Msa0661190 | -0.809402 | 1.925782e-50 | -8.615850e-47 |
| Msa0084780 | Msa0740510 | 0.802708 | 4.935723e-49 | -8.615850e-47 |
| Msa0084780 | Msa0750430 | 0.804703 | 1.901809e-49 | -8.615850e-47 |
| Msa0084780 | Msa0820770 | 0.805884 | 1.075967e-49 | -8.615850e-47 |
| Msa0084780 | Msa0832150 | 0.801140 | 1.036326e-48 | -8.615850e-47 |
| Msa0084780 | Msa0861090 | 0.802423 | 5.649943e-49 | -8.615850e-47 |
| Msa0084780 | Msa0866950 | 0.816784 | 4.625748e-52 | -8.615850e-47 |
| Msa0084780 | Msa0869120 | 0.818512 | 1.885830e-52 | -8.615850e-47 |
| Msa0084780 | Msa0930140 | 0.805241 | 1.467900e-49 | -8.615850e-47 |
| Msa0084780 | Msa0933230 | 0.809237 | 2.089263e-50 | -8.615850e-47 |
| Msa0084780 | Msa0933310 | 0.814846 | 1.251459e-51 | -8.615850e-47 |
| Msa0084780 | Msa0971090 | 0.808910 | 2.455403e-50 | -8.615850e-47 |
| Msa0084780 | Msa1012830 | 0.803451 | 3.464136e-49 | -8.615850e-47 |
| Msa0084780 | Msa1046020 | 0.801449 | 8.957848e-49 | -8.615850e-47 |
| Msa0084780 | Msa1046060 | 0.804101 | 2.538630e-49 | -8.615850e-47 |
| Msa0084780 | Msa1089840 | 0.810975 | 8.820285e-51 | -8.615850e-47 |
| Msa0084780 | Msa1199560 | 0.805125 | 1.552219e-49 | -8.615850e-47 |
| Msa0084780 | Msa1201560 | 0.809846 | 1.546186e-50 | -8.615850e-47 |
| Msa0084780 | Msa1204530 | 0.814079 | 1.849512e-51 | -8.615850e-47 |
| Msa0084780 | Msa1267520 | 0.800348 | 1.503254e-48 | -8.615850e-47 |
| Msa0084780 | Msa1269300 | 0.808551 | 2.929814e-50 | -8.615850e-47 |
| Msa0084780 | Msa1304820 | 0.823887 | 1.087102e-53 | -8.615850e-47 |
| Msa0084780 | Msa1305340 | 0.808695 | 2.729462e-50 | -8.615850e-47 |
| Msa0084780 | Msa1345040 | 0.802268 | 6.082450e-49 | -8.615850e-47 |
| Msa0084780 | Msa1358610 | -0.802051 | 6.739749e-49 | -8.615850e-47 |
| Msa0084780 | Msa1412890 | 0.800366 | 1.490878e-48 | -8.615850e-47 |
| Msa0084780 | Msa1424450 | 0.807068 | 6.053558e-50 | -8.615850e-47 |
| Msa0084780 | Msa1440000 | 0.817739 | 2.820740e-52 | -8.615850e-47 |
| Msa0084780 | Msa1444740 | 0.845297 | 4.434397e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084780 | MtrunA17_Chr1g0199461 | 93.093 | 333 | 12 | 1 | 1 | 333 | 1 | 322 | 0.0 | 639 |
| Msa0084780 | MtrunA17_Chr1g0180941 | 45.846 | 325 | 136 | 5 | 10 | 331 | 8 | 295 | 1.88e-81 | 253 |
| Msa0084780 | MtrunA17_Chr6g0461741 | 53.107 | 177 | 71 | 2 | 156 | 331 | 27 | 192 | 1.64e-60 | 195 |
| Msa0084780 | MtrunA17_Chr3g0120091 | 51.534 | 163 | 68 | 1 | 175 | 337 | 47 | 198 | 1.81e-53 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084780 | AT5G04250.2 | 47.734 | 331 | 144 | 7 | 4 | 331 | 2 | 306 | 1.53e-89 | 274 |
| Msa0084780 | AT5G04250.1 | 47.734 | 331 | 144 | 7 | 4 | 331 | 2 | 306 | 1.53e-89 | 274 |
| Msa0084780 | AT5G03330.3 | 49.640 | 278 | 118 | 5 | 54 | 331 | 60 | 315 | 1.09e-72 | 231 |
| Msa0084780 | AT5G03330.4 | 49.640 | 278 | 118 | 5 | 54 | 331 | 60 | 315 | 1.09e-72 | 231 |
| Msa0084780 | AT5G03330.1 | 49.640 | 278 | 118 | 5 | 54 | 331 | 60 | 315 | 1.90e-72 | 231 |
| Msa0084780 | AT5G03330.2 | 49.640 | 278 | 118 | 5 | 54 | 331 | 60 | 315 | 1.90e-72 | 231 |
| Msa0084780 | AT3G02070.1 | 55.747 | 174 | 66 | 1 | 158 | 331 | 19 | 181 | 1.42e-61 | 198 |
| Msa0084780 | AT3G02070.2 | 55.747 | 174 | 66 | 1 | 158 | 331 | 19 | 181 | 1.42e-61 | 198 |
| Msa0084780 | AT3G22260.1 | 48.555 | 173 | 76 | 2 | 166 | 336 | 47 | 208 | 1.80e-50 | 170 |
| Msa0084780 | AT3G22260.4 | 48.555 | 173 | 76 | 2 | 166 | 336 | 47 | 208 | 3.37e-50 | 169 |
| Msa0084780 | AT3G22260.3 | 48.555 | 173 | 76 | 2 | 166 | 336 | 47 | 208 | 3.37e-50 | 169 |
| Msa0084780 | AT3G22260.6 | 48.555 | 173 | 76 | 2 | 166 | 336 | 47 | 208 | 3.37e-50 | 169 |
| Msa0084780 | AT3G22260.5 | 48.555 | 173 | 76 | 2 | 166 | 336 | 47 | 208 | 3.37e-50 | 169 |
| Msa0084780 | AT3G22260.2 | 48.555 | 173 | 76 | 2 | 166 | 336 | 47 | 208 | 3.37e-50 | 169 |
| Msa0084780 | AT2G39320.1 | 41.837 | 98 | 38 | 1 | 234 | 331 | 2 | 80 | 2.66e-17 | 80.1 |
Find 110 sgRNAs with CRISPR-Local
Find 419 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTAATATTTCTGAGCTTT+TGG | 0.231658 | 1_2:-64395426 | Msa0084780:CDS |
| CTTGATTCCATGGAATCTTC+TGG | 0.245382 | 1_2:-64400704 | Msa0084780:CDS |
| GAGCATGAAGTTGGAGTATT+TGG | 0.256310 | 1_2:-64400415 | Msa0084780:CDS |
| CATGATGACATCACATGATA+TGG | 0.308680 | 1_2:-64400921 | Msa0084780:CDS |
| ATAGTCAAGTTCAATATGTT+AGG | 0.312757 | 1_2:-64400802 | Msa0084780:CDS |
| ATATGAACTGATTGAGTCTA+AGG | 0.313550 | 1_2:-64397979 | Msa0084780:CDS |
| GAGTATTTGGTTCGTCTTCT+AGG | 0.317804 | 1_2:-64400402 | Msa0084780:CDS |
| ATGACTCATCTACGGGATTC+TGG | 0.332360 | 1_2:+64400488 | None:intergenic |
| ATAAATTTGTTACCTCCTTC+CGG | 0.346210 | 1_2:+64395376 | None:intergenic |
| CGTACAAATTTGTGGAGGTT+TGG | 0.367169 | 1_2:+64397017 | None:intergenic |
| ATGGTGGAACTTTGGCGTTT+AGG | 0.370980 | 1_2:-64394855 | Msa0084780:CDS |
| ACCTGTCTAGCAGCCTTTGA+TGG | 0.372482 | 1_2:+64399804 | None:intergenic |
| AGAATAGAAGGAGGCGAAGA+GGG | 0.380255 | 1_2:+64394643 | None:intergenic |
| TATATACATAAAAGAATAGA+AGG | 0.383736 | 1_2:+64394631 | None:intergenic |
| GGGCGATCATGTCACGTTGC+AGG | 0.384197 | 1_2:-64396695 | Msa0084780:CDS |
| TACAAAGCCGGTCATACTAA+TGG | 0.384307 | 1_2:+64394750 | None:intergenic |
| CTATGCTGGTTATGTTCCTA+TGG | 0.389215 | 1_2:-64396863 | Msa0084780:CDS |
| GAAGTTACACTTACAGGAAT+AGG | 0.398508 | 1_2:+64400274 | None:intergenic |
| ATTTGTGATTACATCTTTCA+AGG | 0.399824 | 1_2:-64395752 | Msa0084780:CDS |
| CATCCTCCGCTTCTTTCATA+TGG | 0.408283 | 1_2:+64400464 | None:intergenic |
| TGATGAAATGTGGCGTTCAT+TGG | 0.411463 | 1_2:-64400356 | Msa0084780:CDS |
| TTGATTCCATGGAATCTTCT+GGG | 0.418354 | 1_2:-64400703 | Msa0084780:CDS |
| ACATAACCAGCATAGAGATC+TGG | 0.421382 | 1_2:+64396871 | None:intergenic |
| GTTGCAGGCTGCTGCAGATT+GGG | 0.423487 | 1_2:-64396680 | Msa0084780:intron |
| CGTTGCAGGCTGCTGCAGAT+TGG | 0.424955 | 1_2:-64396681 | Msa0084780:CDS |
| ACCATCAAAGGCTGCTAGAC+AGG | 0.427425 | 1_2:-64399805 | Msa0084780:intron |
| TTTGGTTCGTCTTCTAGGTC+AGG | 0.429238 | 1_2:-64400397 | Msa0084780:CDS |
| GTGGCGTTCATTGGAAATAT+CGG | 0.434139 | 1_2:-64400347 | Msa0084780:CDS |
| AAGAATAGAAGGAGGCGAAG+AGG | 0.435692 | 1_2:+64394642 | None:intergenic |
| ACAATAATATGCAGCTAACT+TGG | 0.442304 | 1_2:+64394545 | None:intergenic |
| GAAAATGATGAGCATGAAGT+TGG | 0.445523 | 1_2:-64400424 | Msa0084780:CDS |
| TCGGACGAGTCTTCTCTTGA+TGG | 0.446395 | 1_2:-64400328 | Msa0084780:CDS |
| ACGGGAACAAGTTGTTCAAC+AGG | 0.449520 | 1_2:-64396997 | Msa0084780:intron |
| TCAAACAGGAGCTATAACTT+TGG | 0.457569 | 1_2:-64400617 | Msa0084780:intron |
| GGATCCTGACGTTGTTCGAT+GGG | 0.467870 | 1_2:-64400900 | Msa0084780:CDS |
| GCATTACAACTCAATTTATC+CGG | 0.470926 | 1_2:-64395395 | Msa0084780:CDS |
| ATTATCACATCTTGATTCCA+TGG | 0.475855 | 1_2:-64400714 | Msa0084780:CDS |
| CTGATTGAGTCTAAGGTTGA+TGG | 0.477397 | 1_2:-64397972 | Msa0084780:CDS |
| AATATTTAAAGAAGATGAGC+AGG | 0.478327 | 1_2:-64396831 | Msa0084780:intron |
| AATTTGTTAGGAGTGGTGAA+TGG | 0.479280 | 1_2:-64396717 | Msa0084780:intron |
| CACATTTCATCAGTAATGAT+AGG | 0.479848 | 1_2:+64400367 | None:intergenic |
| ACTGGCTATCTTCTTCAAAC+AGG | 0.480173 | 1_2:-64400631 | Msa0084780:CDS |
| AAGAAGAGATGGTGGAACTT+TGG | 0.480199 | 1_2:-64394863 | Msa0084780:CDS |
| AATCTAACATATTCTTAAGC+TGG | 0.480575 | 1_2:-64394488 | Msa0084780:three_prime_UTR |
| AGCTCAAATGATTACAAAGC+CGG | 0.482549 | 1_2:+64394738 | None:intergenic |
| TAGTCAAGTTCAATATGTTA+GGG | 0.494117 | 1_2:-64400801 | Msa0084780:CDS |
| TAGCCAGTCCTGTGCATCTA+CGG | 0.494897 | 1_2:+64400646 | None:intergenic |
| TGGATCCTGACGTTGTTCGA+TGG | 0.500356 | 1_2:-64400901 | Msa0084780:CDS |
| AGGCCCCATCGAACAACGTC+AGG | 0.501197 | 1_2:+64400896 | None:intergenic |
| CTTGTTCCCGTACAAATTTG+TGG | 0.501678 | 1_2:+64397009 | None:intergenic |
| ATTGGTTCCATTAGTATGAC+CGG | 0.501743 | 1_2:-64394757 | Msa0084780:exon |
| GATCCCCAGGTGTCGTAACT+CGG | 0.501878 | 1_2:-64400838 | Msa0084780:CDS |
| CATATGGTATGACTCATCTA+CGG | 0.505093 | 1_2:+64400480 | None:intergenic |
| TCTTCTCTTGATGGTGAAGT+AGG | 0.505900 | 1_2:-64400319 | Msa0084780:CDS |
| TTTCCACATGGTCGATCCCC+AGG | 0.509153 | 1_2:-64400851 | Msa0084780:CDS |
| ATATGGTATGACTCATCTAC+GGG | 0.510485 | 1_2:+64400481 | None:intergenic |
| TTACAGGAATAGGAACCATC+TGG | 0.510872 | 1_2:+64400284 | None:intergenic |
| CATAACCAGCATAGAGATCT+GGG | 0.512866 | 1_2:+64396872 | None:intergenic |
| GGAGGAACCAACTCTAGCTA+TGG | 0.513218 | 1_2:+64394664 | None:intergenic |
| CAAACCTCCACAAATTTGTA+CGG | 0.514664 | 1_2:-64397016 | Msa0084780:CDS |
| AAATAAATATATAACGCAGC+TGG | 0.521490 | 1_2:+64394708 | None:intergenic |
| ATTTGTTAGGAGTGGTGAAT+GGG | 0.523506 | 1_2:-64396716 | Msa0084780:intron |
| CATCCGTAGATGCACAGGAC+TGG | 0.527233 | 1_2:-64400649 | Msa0084780:CDS |
| AGGATGGTGGTCCAAGTGAA+AGG | 0.528945 | 1_2:-64400447 | Msa0084780:CDS |
| CATCCTCCCAGAAGATTCCA+TGG | 0.533488 | 1_2:+64400697 | None:intergenic |
| GTTTAGGATCAGCGCACAAA+TGG | 0.537718 | 1_2:-64394839 | Msa0084780:CDS |
| AAGAAGTATCAGACCATCAA+AGG | 0.544120 | 1_2:-64399817 | Msa0084780:CDS |
| TCCGACCCAGATCTCTATGC+TGG | 0.548139 | 1_2:-64396877 | Msa0084780:CDS |
| GATACTTCTTCGTTCTCAGA+TGG | 0.551344 | 1_2:+64399830 | None:intergenic |
| TCACACCGAGTTACGACACC+TGG | 0.553213 | 1_2:+64400833 | None:intergenic |
| AAATATTCACTATAAACCAT+AGG | 0.553433 | 1_2:+64396847 | None:intergenic |
| GCGAGCATCCGTAGATGCAC+AGG | 0.562509 | 1_2:-64400654 | Msa0084780:CDS |
| CAAGTTCAATATGTTAGGGA+AGG | 0.564597 | 1_2:-64400797 | Msa0084780:CDS |
| TGATGGAGATGGTAACTGTC+AGG | 0.570584 | 1_2:-64397955 | Msa0084780:intron |
| CAATAGTTCAACACCGCGCA+AGG | 0.573646 | 1_2:+64394448 | None:intergenic |
| TACAACTCAATTTATCCGGA+AGG | 0.580859 | 1_2:-64395391 | Msa0084780:CDS |
| GAGTCTAAGGTTGATGGAGA+TGG | 0.583074 | 1_2:-64397966 | Msa0084780:CDS |
| AAACCTCCACAAATTTGTAC+GGG | 0.584066 | 1_2:-64397015 | Msa0084780:CDS |
| TCTGGTCAGATTGTCTGCAA+TGG | 0.587731 | 1_2:+64394797 | None:intergenic |
| GGATGGTGGTCCAAGTGAAA+GGG | 0.588268 | 1_2:-64400446 | Msa0084780:CDS |
| GAGGAACCAACTCTAGCTAT+GGG | 0.590658 | 1_2:+64394665 | None:intergenic |
| ATACAACTATACACTGTACA+AGG | 0.590665 | 1_2:+64394577 | None:intergenic |
| TTATTCGCAACATATTGTTG+AGG | 0.598375 | 1_2:-64394521 | Msa0084780:three_prime_UTR |
| AGGCAAAAGATTAAACCAGA+TGG | 0.599929 | 1_2:-64400299 | Msa0084780:CDS |
| CCAGTGCCCATAGCTAGAGT+TGG | 0.600161 | 1_2:-64394671 | Msa0084780:three_prime_UTR |
| CATATGAAAGAAGCGGAGGA+TGG | 0.603908 | 1_2:-64400463 | Msa0084780:CDS |
| AACTCAATTTATCCGGAAGG+AGG | 0.611887 | 1_2:-64395388 | Msa0084780:intron |
| AATATAAGTTTGTCCTTGCG+CGG | 0.615391 | 1_2:-64394461 | Msa0084780:three_prime_UTR |
| ATGAAAGAAGCGGAGGATGG+TGG | 0.617253 | 1_2:-64400460 | Msa0084780:CDS |
| TATGGGCACTGGCAGTGTCA+AGG | 0.619181 | 1_2:+64394682 | None:intergenic |
| CCAACTCTAGCTATGGGCAC+TGG | 0.620376 | 1_2:+64394671 | None:intergenic |
| TGCAAACATCTAGAAGATGT+AGG | 0.621131 | 1_2:+64400876 | None:intergenic |
| CTTGTGGACTTCTGTATCTG+CGG | 0.625166 | 1_2:+64395706 | None:intergenic |
| TTTGTTAGGAGTGGTGAATG+GGG | 0.625472 | 1_2:-64396715 | Msa0084780:intron |
| GGTCATACTAATGGAACCAA+TGG | 0.630026 | 1_2:+64394759 | None:intergenic |
| GTCATACCATATGAAAGAAG+CGG | 0.641922 | 1_2:-64400470 | Msa0084780:CDS |
| CACACCGAGTTACGACACCT+GGG | 0.643245 | 1_2:+64400834 | None:intergenic |
| ATAGAAGGAGGCGAAGAGGG+AGG | 0.650159 | 1_2:+64394646 | None:intergenic |
| ACCAGCATAGAGATCTGGGT+CGG | 0.658906 | 1_2:+64396876 | None:intergenic |
| ACACCTGGGGATCGACCATG+TGG | 0.659972 | 1_2:+64400848 | None:intergenic |
| TTCAAATGTTGAACATGACG+AGG | 0.665749 | 1_2:-64400762 | Msa0084780:CDS |
| ATACATAAAAGAATAGAAGG+AGG | 0.670501 | 1_2:+64394634 | None:intergenic |
| GATGTTTGCACATTTCCACA+TGG | 0.675781 | 1_2:-64400863 | Msa0084780:CDS |
| GTTCCCGTACAAATTTGTGG+AGG | 0.677176 | 1_2:+64397012 | None:intergenic |
| ATACCATATGAAAGAAGCGG+AGG | 0.679796 | 1_2:-64400467 | Msa0084780:CDS |
| GATCCTGACGTTGTTCGATG+GGG | 0.691921 | 1_2:-64400899 | Msa0084780:CDS |
| CTATCATTACTGATGAAATG+TGG | 0.702769 | 1_2:-64400366 | Msa0084780:CDS |
| ATTCCATGGAATCTTCTGGG+AGG | 0.705324 | 1_2:-64400700 | Msa0084780:CDS |
| ACACCGAGTTACGACACCTG+GGG | 0.730726 | 1_2:+64400835 | None:intergenic |
| ACACTGTACAAGGAAAACAA+AGG | 0.735590 | 1_2:+64394587 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTGAAAAAAATGAAAA+CGG | + | chr1_2:64396227-64396246 | None:intergenic | 10.0% |
| !!! | ATTATATTTTTTATGAAAAC+AGG | + | chr1_2:64396599-64396618 | None:intergenic | 10.0% |
| !! | AAAAAATATAATAAAAGCTT+CGG | - | chr1_2:64396607-64396626 | Msa0084780:intron | 10.0% |
| !! | TAATAATTATTTGGTATAAT+AGG | + | chr1_2:64396704-64396723 | None:intergenic | 10.0% |
| !! | ACTACTAATTAATAATTATT+TGG | + | chr1_2:64396713-64396732 | None:intergenic | 10.0% |
| !! | TTATTAATTAGTAGTTATAT+TGG | - | chr1_2:64396718-64396737 | Msa0084780:intron | 10.0% |
| !! | TGAAATAAATATTATAATAC+TGG | + | chr1_2:64397552-64397571 | None:intergenic | 10.0% |
| !! | TAAAACATTCATAAATTTAT+TGG | - | chr1_2:64397579-64397598 | Msa0084780:intron | 10.0% |
| !! | AAAACATTCATAAATTTATT+GGG | - | chr1_2:64397580-64397599 | Msa0084780:intron | 10.0% |
| !! | ATTAATTAAAATTGATGTAT+AGG | + | chr1_2:64398914-64398933 | None:intergenic | 10.0% |
| !!! | ATCAATTTTAATTAATCAAA+TGG | - | chr1_2:64398918-64398937 | Msa0084780:intron | 10.0% |
| !! | AAAAATTATTTGTCTTTAAA+TGG | - | chr1_2:64399423-64399442 | Msa0084780:intron | 10.0% |
| !! | TAAATTCTTTAATTATGTAT+AGG | - | chr1_2:64399500-64399519 | Msa0084780:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTGCTTC+TGG | - | chr1_2:64395322-64395341 | Msa0084780:intron | 15.0% |
| !!! | ATTTTATTTTTTATGTCTGT+TGG | - | chr1_2:64395662-64395681 | Msa0084780:intron | 15.0% |
| !! | AGAAAAAAAAAAAAACCAAA+TGG | + | chr1_2:64395767-64395786 | None:intergenic | 15.0% |
| !!! | CAAATTCATAATTTTCTTAA+AGG | + | chr1_2:64395872-64395891 | None:intergenic | 15.0% |
| !! | ATGAAAAAGATTTAATAAGA+TGG | - | chr1_2:64397280-64397299 | Msa0084780:intron | 15.0% |
| !! | GTAGAAAAAAATATAAAAAG+AGG | + | chr1_2:64397332-64397351 | None:intergenic | 15.0% |
| !!! | AATTTATGAATGTTTTAACA+AGG | + | chr1_2:64397576-64397595 | None:intergenic | 15.0% |
| !!! | ATTTTTTAGCATTATTAACT+TGG | - | chr1_2:64398282-64398301 | Msa0084780:intron | 15.0% |
| !! | AAACAGAAGAAAATTATAAT+AGG | + | chr1_2:64398813-64398832 | None:intergenic | 15.0% |
| !! | TTCTATCATAAACTAAAATT+TGG | + | chr1_2:64399013-64399032 | None:intergenic | 15.0% |
| !!! | TAATTGTTATTAGGAAAATT+GGG | + | chr1_2:64399150-64399169 | None:intergenic | 15.0% |
| !!! | TTAATTGTTATTAGGAAAAT+TGG | + | chr1_2:64399151-64399170 | None:intergenic | 15.0% |
| !! | ATTGGTATTATAATCTTTAT+TGG | - | chr1_2:64399397-64399416 | Msa0084780:intron | 15.0% |
| !! | TTAATTATGTATAGGAATTA+AGG | - | chr1_2:64399508-64399527 | Msa0084780:intron | 15.0% |
| !! | TATATACATAAAAGAATAGA+AGG | + | chr1_2:64400807-64400826 | None:intergenic | 15.0% |
| !!! | GTATGTTTTTGTTGATTTTA+GGG | + | chr1_2:64395586-64395605 | None:intergenic | 20.0% |
| !! | GTATTTAATTAACTTCTTCT+AGG | + | chr1_2:64395700-64395719 | None:intergenic | 20.0% |
| !!! | GTATTATAGTTATTTTAGAG+AGG | - | chr1_2:64395898-64395917 | Msa0084780:intron | 20.0% |
| !! | AAAAAAAAGCAACAAAGAAA+AGG | - | chr1_2:64396064-64396083 | Msa0084780:intron | 20.0% |
| !! | AAGTTATTGAGAAACTAATT+TGG | + | chr1_2:64396349-64396368 | None:intergenic | 20.0% |
| !! | ATTAAGAAACTAACTCATTA+AGG | + | chr1_2:64396376-64396395 | None:intergenic | 20.0% |
| !! | AAAAAAAAAACATGTTTGCT+GGG | + | chr1_2:64396637-64396656 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAACATGTTTGC+TGG | + | chr1_2:64396638-64396657 | None:intergenic | 20.0% |
| !!! | TGGTCAACTTATATATTTTT+TGG | + | chr1_2:64397985-64398004 | None:intergenic | 20.0% |
| !! | TCATAACATTTGTAGAAAAA+AGG | + | chr1_2:64398099-64398118 | None:intergenic | 20.0% |
| !! | TGTTATGAATCTTATGATAT+AGG | - | chr1_2:64398111-64398130 | Msa0084780:intron | 20.0% |
| !! | GAATCAATACATATGATTAA+AGG | + | chr1_2:64398508-64398527 | None:intergenic | 20.0% |
| !! | AAATATTCACTATAAACCAT+AGG | + | chr1_2:64398591-64398610 | None:intergenic | 20.0% |
| !!! | AATTGTTATTAGGAAAATTG+GGG | + | chr1_2:64399149-64399168 | None:intergenic | 20.0% |
| !! | TTAAACCATTTGAACTATTT+GGG | + | chr1_2:64399333-64399352 | None:intergenic | 20.0% |
| !! | TTTAATCCTTGATATATCAT+AGG | - | chr1_2:64399366-64399385 | Msa0084780:intron | 20.0% |
| !! | TTTAAACCTATGATATATCA+AGG | + | chr1_2:64399375-64399394 | None:intergenic | 20.0% |
| !! | ATATCATAGGTTTAAATGAT+TGG | - | chr1_2:64399379-64399398 | Msa0084780:intron | 20.0% |
| !! | CACTCAAATTAAAATTTGAT+AGG | + | chr1_2:64399899-64399918 | None:intergenic | 20.0% |
| !!! | ATCAAATTTTAATTTGAGTG+TGG | - | chr1_2:64399899-64399918 | Msa0084780:intron | 20.0% |
| !!! | TATTTTAAAGATATGCTATG+AGG | + | chr1_2:64400417-64400436 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCAAATAAGATGA+AGG | + | chr1_2:64400554-64400573 | None:intergenic | 20.0% |
| ! | ATAGTCAAGTTCAATATGTT+AGG | - | chr1_2:64394633-64394652 | Msa0084780:three_prime_UTR | 25.0% |
| ! | TAGTCAAGTTCAATATGTTA+GGG | - | chr1_2:64394634-64394653 | Msa0084780:three_prime_UTR | 25.0% |
| !!! | TAGTTATTTTCGTATGTAAG+AGG | - | chr1_2:64394872-64394891 | Msa0084780:CDS | 25.0% |
| ! | GTGATATATAATCAACATGT+AGG | - | chr1_2:64394912-64394931 | Msa0084780:intron | 25.0% |
| !!! | GGTATGTTTTTGTTGATTTT+AGG | + | chr1_2:64395587-64395606 | None:intergenic | 25.0% |
| ! | ACAAAATATTGTCTGTTACA+AGG | + | chr1_2:64395792-64395811 | None:intergenic | 25.0% |
| !! | TCATAATTTTCTTAAACGAG+AGG | + | chr1_2:64395867-64395886 | None:intergenic | 25.0% |
| !! | TCATAATTTTCTTAAAGGAG+AGG | + | chr1_2:64395955-64395974 | None:intergenic | 25.0% |
| ! | TTCTCAAAGAGAAGTTAAAA+TGG | - | chr1_2:64396012-64396031 | Msa0084780:intron | 25.0% |
| ! | TCTCAAAGAGAAGTTAAAAT+GGG | - | chr1_2:64396013-64396032 | Msa0084780:intron | 25.0% |
| !!! | TTTTTTTTCTTTTCAAGCTG+TGG | + | chr1_2:64396051-64396070 | None:intergenic | 25.0% |
| !!! | TTTTTTATCTAGAGAAGTGT+AGG | - | chr1_2:64396271-64396290 | Msa0084780:intron | 25.0% |
| !!! | TTTTTATCTAGAGAAGTGTA+GGG | - | chr1_2:64396272-64396291 | Msa0084780:intron | 25.0% |
| !! | GAGTTAGTTTCTTAATTACT+TGG | - | chr1_2:64396380-64396399 | Msa0084780:intron | 25.0% |
| !! | AAAAAAAAACATGTTTGCTG+GGG | + | chr1_2:64396636-64396655 | None:intergenic | 25.0% |
| ! | TATTGGTGTATCACTATATT+GGG | + | chr1_2:64396813-64396832 | None:intergenic | 25.0% |
| ! | ATATTGGTGTATCACTATAT+TGG | + | chr1_2:64396814-64396833 | None:intergenic | 25.0% |
| !!! | ACACCAATATAGTTGTTTTT+AGG | - | chr1_2:64396824-64396843 | Msa0084780:intron | 25.0% |
| ! | ACACCTAAAAACAACTATAT+TGG | + | chr1_2:64396830-64396849 | None:intergenic | 25.0% |
| ! | TACGTATGAATTTCTGAATT+TGG | - | chr1_2:64396947-64396966 | Msa0084780:intron | 25.0% |
| ! | TATGAATTTCTGAATTTGGT+AGG | - | chr1_2:64396951-64396970 | Msa0084780:intron | 25.0% |
| ! | AAGAGATCATCTTATTAGTT+GGG | + | chr1_2:64397156-64397175 | None:intergenic | 25.0% |
| ! | AAAGAGATCATCTTATTAGT+TGG | + | chr1_2:64397157-64397176 | None:intergenic | 25.0% |
| !! | ACTAATAAGATGATCTCTTT+TGG | - | chr1_2:64397157-64397176 | Msa0084780:intron | 25.0% |
| !! | ATGTTATAACTTGTGAAAGT+AGG | - | chr1_2:64397623-64397642 | Msa0084780:intron | 25.0% |
| !! | AAATATATAAGTTGACCACA+TGG | - | chr1_2:64397987-64398006 | Msa0084780:CDS | 25.0% |
| ! | TTTATCAGAAGTAAATCCTT+TGG | - | chr1_2:64398044-64398063 | Msa0084780:intron | 25.0% |
| ! | TTATCAGAAGTAAATCCTTT+GGG | - | chr1_2:64398045-64398064 | Msa0084780:intron | 25.0% |
| !! | AATAATAAAGAGTGACTTGT+TGG | - | chr1_2:64398346-64398365 | Msa0084780:intron | 25.0% |
| ! | AATATTTAAAGAAGATGAGC+AGG | - | chr1_2:64398604-64398623 | Msa0084780:intron | 25.0% |
| ! | TTATGTTTCTTATGCCAATA+TGG | - | chr1_2:64398652-64398671 | Msa0084780:intron | 25.0% |
| !! | GCTTTATGTATGAATTTGTT+AGG | - | chr1_2:64398706-64398725 | Msa0084780:intron | 25.0% |
| ! | GAAGAAAATTATAATAGGCA+AGG | + | chr1_2:64398808-64398827 | None:intergenic | 25.0% |
| ! | TTAAAATAAACTCTGACACT+TGG | + | chr1_2:64398883-64398902 | None:intergenic | 25.0% |
| ! | TAAAATTGATGTATAGGAGT+TGG | + | chr1_2:64398908-64398927 | None:intergenic | 25.0% |
| !!! | AGTTTTTCAAGGTCTAAATA+TGG | + | chr1_2:64398945-64398964 | None:intergenic | 25.0% |
| ! | TTAGACCTTGAAAAACTATA+AGG | - | chr1_2:64398948-64398967 | Msa0084780:intron | 25.0% |
| ! | TAGACCTTGAAAAACTATAA+GGG | - | chr1_2:64398949-64398968 | Msa0084780:intron | 25.0% |
| ! | AGTTTATGATAGAACATCAT+TGG | - | chr1_2:64399019-64399038 | Msa0084780:intron | 25.0% |
| !!! | ACTGCGTTTTAATTGTTATT+AGG | + | chr1_2:64399159-64399178 | None:intergenic | 25.0% |
| !! | TTTGGGACAATTAAACTATT+TGG | + | chr1_2:64399316-64399335 | None:intergenic | 25.0% |
| ! | CTTAAACCATTTGAACTATT+TGG | + | chr1_2:64399334-64399353 | None:intergenic | 25.0% |
| ! | ATAAGTAAATATCATGTCAC+CGG | + | chr1_2:64399471-64399490 | None:intergenic | 25.0% |
| ! | ATTTACTTGAATGACTGATA+TGG | - | chr1_2:64399625-64399644 | Msa0084780:intron | 25.0% |
| ! | ATTTGTGATTACATCTTTCA+AGG | - | chr1_2:64399683-64399702 | Msa0084780:intron | 25.0% |
| ! | AGTACATGTAAATGTGAATA+TGG | - | chr1_2:64399808-64399827 | Msa0084780:CDS | 25.0% |
| ! | AATATTACTGCATAAATCAC+AGG | + | chr1_2:64399999-64400018 | None:intergenic | 25.0% |
| !!! | AGTAATATTTCTGAGCTTTT+GGG | - | chr1_2:64400010-64400029 | Msa0084780:intron | 25.0% |
| ! | TTTGTATATAGGAGATTTCA+TGG | + | chr1_2:64400186-64400205 | None:intergenic | 25.0% |
| !!! | TTGGCTGTATTTTTGTATAT+AGG | + | chr1_2:64400197-64400216 | None:intergenic | 25.0% |
| ! | ATATACAAAAATACAGCCAA+TGG | - | chr1_2:64400197-64400216 | Msa0084780:intron | 25.0% |
| !! | TCATATGGTTATATTTTCAG+AGG | - | chr1_2:64400461-64400480 | Msa0084780:CDS | 25.0% |
| ! | ATTTGAAGAAAAAGAAGAGA+TGG | - | chr1_2:64400561-64400580 | Msa0084780:intron | 25.0% |
| ! | AAATAAATATATAACGCAGC+TGG | + | chr1_2:64400730-64400749 | None:intergenic | 25.0% |
| ! | ATACATAAAAGAATAGAAGG+AGG | + | chr1_2:64400804-64400823 | None:intergenic | 25.0% |
| ! | AATCTAACATATTCTTAAGC+TGG | - | chr1_2:64400947-64400966 | Msa0084780:five_prime_UTR | 25.0% |
| ATTATCACATCTTGATTCCA+TGG | - | chr1_2:64394721-64394740 | Msa0084780:three_prime_UTR | 30.0% | |
| TAACTTTGGTACTAGAAACT+TGG | - | chr1_2:64394832-64394851 | Msa0084780:CDS | 30.0% | |
| CACATTTCATCAGTAATGAT+AGG | + | chr1_2:64395071-64395090 | None:intergenic | 30.0% | |
| CTATCATTACTGATGAAATG+TGG | - | chr1_2:64395069-64395088 | Msa0084780:intron | 30.0% | |
| ! | GATGATTTTGCATAGAATTC+AGG | - | chr1_2:64395215-64395234 | Msa0084780:intron | 30.0% |
| !! | ATGGAGAAGTCTTTTTAAAG+TGG | + | chr1_2:64395727-64395746 | None:intergenic | 30.0% |
| CTCAAAGAGAAGTTAAAATG+GGG | - | chr1_2:64396014-64396033 | Msa0084780:intron | 30.0% | |
| AATCATCTCTAGTATGTGAA+AGG | + | chr1_2:64396121-64396140 | None:intergenic | 30.0% | |
| TGATTGTTCCCTTAAATCTT+TGG | - | chr1_2:64396136-64396155 | Msa0084780:intron | 30.0% | |
| GATTGTTCCCTTAAATCTTT+GGG | - | chr1_2:64396137-64396156 | Msa0084780:intron | 30.0% | |
| AAATGAAAACGGTACTAGAT+AGG | + | chr1_2:64396216-64396235 | None:intergenic | 30.0% | |
| AATGAAAACTGTACTAGAGA+AGG | + | chr1_2:64396251-64396270 | None:intergenic | 30.0% | |
| !! | TTTTATCTAGAGAAGTGTAG+GGG | - | chr1_2:64396273-64396292 | Msa0084780:intron | 30.0% |
| AATTTGTGCCTTTCATTAGA+AGG | - | chr1_2:64396300-64396319 | Msa0084780:intron | 30.0% | |
| ATTATTGCTTAGTCGTGTAT+GGG | + | chr1_2:64396752-64396771 | None:intergenic | 30.0% | |
| AATTATTGCTTAGTCGTGTA+TGG | + | chr1_2:64396753-64396772 | None:intergenic | 30.0% | |
| AACTTCTAAATACACCCATT+CGG | - | chr1_2:64396779-64396798 | Msa0084780:intron | 30.0% | |
| CTTCTTGACTTAGTTTCTAA+AGG | - | chr1_2:64397041-64397060 | Msa0084780:CDS | 30.0% | |
| !!! | TATTGTTTTGACAGCTAGTA+TGG | + | chr1_2:64397073-64397092 | None:intergenic | 30.0% |
| TTCAAAAAGAATCCAGTCAA+AGG | + | chr1_2:64397231-64397250 | None:intergenic | 30.0% | |
| ATATGAACTGATTGAGTCTA+AGG | - | chr1_2:64397456-64397475 | Msa0084780:intron | 30.0% | |
| TGAAAGTAGGATTAAGAATG+AGG | - | chr1_2:64397636-64397655 | Msa0084780:intron | 30.0% | |
| GAAAGTAGGATTAAGAATGA+GGG | - | chr1_2:64397637-64397656 | Msa0084780:intron | 30.0% | |
| AAAGTAGGATTAAGAATGAG+GGG | - | chr1_2:64397638-64397657 | Msa0084780:intron | 30.0% | |
| ! | ATATATGTCTGAAGTCTTCA+CGG | + | chr1_2:64397764-64397783 | None:intergenic | 30.0% |
| AATGGGAATGAATATGCTAT+TGG | + | chr1_2:64397800-64397819 | None:intergenic | 30.0% | |
| ATTTACATTGTTGTCTCTCT+TGG | + | chr1_2:64397890-64397909 | None:intergenic | 30.0% | |
| CTCTTTATACTATGAACAGA+AGG | - | chr1_2:64397948-64397967 | Msa0084780:intron | 30.0% | |
| TATGCTATTAATGAACCATG+TGG | + | chr1_2:64398005-64398024 | None:intergenic | 30.0% | |
| TATCAGAAGTAAATCCTTTG+GGG | - | chr1_2:64398046-64398065 | Msa0084780:intron | 30.0% | |
| !! | CAATGATGTTTTTACCTGTT+TGG | - | chr1_2:64398474-64398493 | Msa0084780:intron | 30.0% |
| GACTTTCAATAAAGCCATAT+TGG | + | chr1_2:64398669-64398688 | None:intergenic | 30.0% | |
| AAAGCTATCAGCAAAACATA+AGG | + | chr1_2:64398691-64398710 | None:intergenic | 30.0% | |
| !! | ATGTATGAATTTGTTAGGAG+TGG | - | chr1_2:64398711-64398730 | Msa0084780:intron | 30.0% |
| AGACCTTGAAAAACTATAAG+GGG | - | chr1_2:64398950-64398969 | Msa0084780:intron | 30.0% | |
| ! | TTTCCCCTTATAGTTTTTCA+AGG | + | chr1_2:64398956-64398975 | None:intergenic | 30.0% |
| AACTATAAGGGGAAACTATT+AGG | - | chr1_2:64398961-64398980 | Msa0084780:intron | 30.0% | |
| TGTAATTTGATCCATGTAGA+GGG | - | chr1_2:64399042-64399061 | Msa0084780:intron | 30.0% | |
| ATTGTCCCAAATAGTTCAAA+TGG | - | chr1_2:64399325-64399344 | Msa0084780:intron | 30.0% | |
| TAAATGGAACTGCTGTAAAA+AGG | - | chr1_2:64399439-64399458 | Msa0084780:intron | 30.0% | |
| ATCAGTCATTCAAGTAAATG+AGG | + | chr1_2:64399624-64399643 | None:intergenic | 30.0% | |
| TGATCAAATCTTACTTCTTG+TGG | + | chr1_2:64399748-64399767 | None:intergenic | 30.0% | |
| !!! | ACTTAGCATTTTTCTGAAAC+AGG | + | chr1_2:64399964-64399983 | None:intergenic | 30.0% |
| !! | CAGTAATATTTCTGAGCTTT+TGG | - | chr1_2:64400009-64400028 | Msa0084780:intron | 30.0% |
| GCATTACAACTCAATTTATC+CGG | - | chr1_2:64400040-64400059 | Msa0084780:intron | 30.0% | |
| !! | ATAAATTTGTTACCTCCTTC+CGG | + | chr1_2:64400062-64400081 | None:intergenic | 30.0% |
| !! | TTTCATGGAGCGTTTTAAAT+TGG | + | chr1_2:64400171-64400190 | None:intergenic | 30.0% |
| TCTTATTGCTAGATAACCAT+TGG | + | chr1_2:64400216-64400235 | None:intergenic | 30.0% | |
| !! | CATTGCAGTTTTATGTAACA+TGG | - | chr1_2:64400324-64400343 | Msa0084780:CDS | 30.0% |
| !! | TACTGTTAGTTTGCTTCATA+TGG | - | chr1_2:64400446-64400465 | Msa0084780:CDS | 30.0% |
| !!! | ATTTTTGGCTCTTAAACCAT+TGG | - | chr1_2:64400660-64400679 | Msa0084780:CDS | 30.0% |
| ATACAACTATACACTGTACA+AGG | + | chr1_2:64400861-64400880 | None:intergenic | 30.0% | |
| ACAATAATATGCAGCTAACT+TGG | + | chr1_2:64400893-64400912 | None:intergenic | 30.0% | |
| TTATTCGCAACATATTGTTG+AGG | - | chr1_2:64400914-64400933 | Msa0084780:CDS | 30.0% | |
| CATGATGACATCACATGATA+TGG | - | chr1_2:64394514-64394533 | Msa0084780:three_prime_UTR | 35.0% | |
| TGCAAACATCTAGAAGATGT+AGG | + | chr1_2:64394562-64394581 | None:intergenic | 35.0% | |
| CAAGTTCAATATGTTAGGGA+AGG | - | chr1_2:64394638-64394657 | Msa0084780:three_prime_UTR | 35.0% | |
| TTCAAATGTTGAACATGACG+AGG | - | chr1_2:64394673-64394692 | Msa0084780:three_prime_UTR | 35.0% | |
| TTGATTCCATGGAATCTTCT+GGG | - | chr1_2:64394732-64394751 | Msa0084780:three_prime_UTR | 35.0% | |
| TCAAACAGGAGCTATAACTT+TGG | - | chr1_2:64394818-64394837 | Msa0084780:CDS | 35.0% | |
| ATATGGTATGACTCATCTAC+GGG | + | chr1_2:64394957-64394976 | None:intergenic | 35.0% | |
| CATATGGTATGACTCATCTA+CGG | + | chr1_2:64394958-64394977 | None:intergenic | 35.0% | |
| GTCATACCATATGAAAGAAG+CGG | - | chr1_2:64394965-64394984 | Msa0084780:intron | 35.0% | |
| ! | TCATCATTTTCCCTTTCACT+TGG | + | chr1_2:64395002-64395021 | None:intergenic | 35.0% |
| GAAAATGATGAGCATGAAGT+TGG | - | chr1_2:64395011-64395030 | Msa0084780:intron | 35.0% | |
| AGGCAAAAGATTAAACCAGA+TGG | - | chr1_2:64395136-64395155 | Msa0084780:intron | 35.0% | |
| GAAGTTACACTTACAGGAAT+AGG | + | chr1_2:64395164-64395183 | None:intergenic | 35.0% | |
| TGAACTGAAGTTACACTTAC+AGG | + | chr1_2:64395170-64395189 | None:intergenic | 35.0% | |
| AAAGAAGAGACATGAAGAAG+TGG | + | chr1_2:64395194-64395213 | None:intergenic | 35.0% | |
| ACTTCTTCATGTCTCTTCTT+TGG | - | chr1_2:64395193-64395212 | Msa0084780:intron | 35.0% | |
| TGGATATAAATGTAGCAACC+AGG | - | chr1_2:64395342-64395361 | Msa0084780:intron | 35.0% | |
| GGATATAAATGTAGCAACCA+GGG | - | chr1_2:64395343-64395362 | Msa0084780:intron | 35.0% | |
| TAACTAACTAGGAATTACCC+TGG | + | chr1_2:64395363-64395382 | None:intergenic | 35.0% | |
| GGTAATTCCTAGTTAGTTAC+TGG | - | chr1_2:64395364-64395383 | Msa0084780:intron | 35.0% | |
| TAGTTAGTTACTGGAATCGT+GGG | - | chr1_2:64395373-64395392 | Msa0084780:intron | 35.0% | |
| !! | AAGAAGTATCAGACCATCAA+AGG | - | chr1_2:64395618-64395637 | Msa0084780:intron | 35.0% |
| !!! | ACCAAATGGCTGTGTTTTTT+GGG | + | chr1_2:64395753-64395772 | None:intergenic | 35.0% |
| !!! | AACCAAATGGCTGTGTTTTT+TGG | + | chr1_2:64395754-64395773 | None:intergenic | 35.0% |
| ! | AGTAATTTGTCCTCTCTTCT+TGG | + | chr1_2:64395823-64395842 | None:intergenic | 35.0% |
| CTTAAAGGAGAGGATATGAA+AGG | + | chr1_2:64395945-64395964 | None:intergenic | 35.0% | |
| GGTTCTACCCAAAGATTTAA+GGG | + | chr1_2:64396147-64396166 | None:intergenic | 35.0% | |
| ! | TGGTTCTACCCAAAGATTTA+AGG | + | chr1_2:64396148-64396167 | None:intergenic | 35.0% |
| TATAAGAGGATATGAGCACT+AGG | + | chr1_2:64396192-64396211 | None:intergenic | 35.0% | |
| GGTACTAGATAGGATATAAG+AGG | + | chr1_2:64396206-64396225 | None:intergenic | 35.0% | |
| ACTTCTAAATACACCCATTC+GGG | - | chr1_2:64396780-64396799 | Msa0084780:intron | 35.0% | |
| GAAGATTACAATGACTTCCT+AGG | + | chr1_2:64397203-64397222 | None:intergenic | 35.0% | |
| AATCTTCTCTATCCTTTGAC+TGG | - | chr1_2:64397216-64397235 | Msa0084780:intron | 35.0% | |
| TGAATCATAAAGAGCCAGAT+TGG | - | chr1_2:64397247-64397266 | Msa0084780:intron | 35.0% | |
| GAATCATAAAGAGCCAGATT+GGG | - | chr1_2:64397248-64397267 | Msa0084780:intron | 35.0% | |
| !! | AGTTTGGAATTTTTCTCCAC+AGG | + | chr1_2:64397731-64397750 | None:intergenic | 35.0% |
| TGTGGAGAAAAATTCCAAAC+TGG | - | chr1_2:64397730-64397749 | Msa0084780:intron | 35.0% | |
| ! | TATATGTCTGAAGTCTTCAC+GGG | + | chr1_2:64397763-64397782 | None:intergenic | 35.0% |
| CAATATTCTTCGACAGGAAT+GGG | + | chr1_2:64397817-64397836 | None:intergenic | 35.0% | |
| GAAATGCAATATTCTTCGAC+AGG | + | chr1_2:64397823-64397842 | None:intergenic | 35.0% | |
| CTTCTGATAAACTCTCAGTA+TGG | + | chr1_2:64398035-64398054 | None:intergenic | 35.0% | |
| !! | AGCATTATTAACTTGGTGTG+TGG | - | chr1_2:64398289-64398308 | Msa0084780:intron | 35.0% |
| !! | GCATTATTAACTTGGTGTGT+GGG | - | chr1_2:64398290-64398309 | Msa0084780:intron | 35.0% |
| AAGTTGTTCAACAGGTTTGT+TGG | - | chr1_2:64398446-64398465 | Msa0084780:intron | 35.0% | |
| !! | TGATGTTTTTACCTGTTTGG+TGG | - | chr1_2:64398477-64398496 | Msa0084780:intron | 35.0% |
| !! | AATTTGTTAGGAGTGGTGAA+TGG | - | chr1_2:64398718-64398737 | Msa0084780:intron | 35.0% |
| ! | ATTTGTTAGGAGTGGTGAAT+GGG | - | chr1_2:64398719-64398738 | Msa0084780:intron | 35.0% |
| TGTGTGTGTGATATGATCAA+CGG | - | chr1_2:64398854-64398873 | Msa0084780:intron | 35.0% | |
| GGAAACTATTAGGAAAGACT+TGG | - | chr1_2:64398971-64398990 | Msa0084780:intron | 35.0% | |
| GTGTAATTTGATCCATGTAG+AGG | - | chr1_2:64399041-64399060 | Msa0084780:intron | 35.0% | |
| ACGCAGTCTTCAAAAAGAAT+TGG | - | chr1_2:64399172-64399191 | Msa0084780:intron | 35.0% | |
| AGGATAAACTGAGTATTCTG+TGG | - | chr1_2:64399528-64399547 | Msa0084780:intron | 35.0% | |
| GGATAAACTGAGTATTCTGT+GGG | - | chr1_2:64399529-64399548 | Msa0084780:intron | 35.0% | |
| GAGGAATAAACAAAACGCAA+TGG | + | chr1_2:64399605-64399624 | None:intergenic | 35.0% | |
| TTTCTCATGTCCTTTCAGTA+TGG | - | chr1_2:64399651-64399670 | Msa0084780:intron | 35.0% | |
| !!! | TATTTTGACGCCATACTGAA+AGG | + | chr1_2:64399664-64399683 | None:intergenic | 35.0% |
| ACTGCATAAATCACAGGTAA+AGG | + | chr1_2:64399993-64400012 | None:intergenic | 35.0% | |
| TACAACTCAATTTATCCGGA+AGG | - | chr1_2:64400044-64400063 | Msa0084780:intron | 35.0% | |
| ! | TGTCTGGAGTGTTTGTATAA+AGG | + | chr1_2:64400085-64400104 | None:intergenic | 35.0% |
| AATTTCCATTATCGTGTGTC+TGG | + | chr1_2:64400101-64400120 | None:intergenic | 35.0% | |
| TCCATGCTCTTGAATTCATT+TGG | - | chr1_2:64400287-64400306 | Msa0084780:intron | 35.0% | |
| ACCAAATGAATTCAAGAGCA+TGG | + | chr1_2:64400291-64400310 | None:intergenic | 35.0% | |
| TGAAGAAAAAGAAGAGATGG+TGG | - | chr1_2:64400564-64400583 | Msa0084780:intron | 35.0% | |
| ! | AGACAATCTGACCAGATTTT+TGG | - | chr1_2:64400645-64400664 | Msa0084780:CDS | 35.0% |
| TGGTTTAAGAGCCAAAAATC+TGG | + | chr1_2:64400659-64400678 | None:intergenic | 35.0% | |
| ! | ATTGGTTCCATTAGTATGAC+CGG | - | chr1_2:64400678-64400697 | Msa0084780:CDS | 35.0% |
| AGCTCAAATGATTACAAAGC+CGG | + | chr1_2:64400700-64400719 | None:intergenic | 35.0% | |
| ACACTGTACAAGGAAAACAA+AGG | + | chr1_2:64400851-64400870 | None:intergenic | 35.0% | |
| AATATAAGTTTGTCCTTGCG+CGG | - | chr1_2:64400974-64400993 | Msa0084780:five_prime_UTR | 35.0% | |
| ! | GAGAGAGAGCTGTGTTTTAT+AGG | - | chr1_2:64394489-64394508 | Msa0084780:three_prime_UTR | 40.0% |
| GATGTTTGCACATTTCCACA+TGG | - | chr1_2:64394572-64394591 | Msa0084780:three_prime_UTR | 40.0% | |
| CTTGATTCCATGGAATCTTC+TGG | - | chr1_2:64394731-64394750 | Msa0084780:three_prime_UTR | 40.0% | |
| ACTGGCTATCTTCTTCAAAC+AGG | - | chr1_2:64394804-64394823 | Msa0084780:CDS | 40.0% | |
| ATACCATATGAAAGAAGCGG+AGG | - | chr1_2:64394968-64394987 | Msa0084780:intron | 40.0% | |
| ! | GAGCATGAAGTTGGAGTATT+TGG | - | chr1_2:64395020-64395039 | Msa0084780:intron | 40.0% |
| ! | GAGTATTTGGTTCGTCTTCT+AGG | - | chr1_2:64395033-64395052 | Msa0084780:intron | 40.0% |
| TGATGAAATGTGGCGTTCAT+TGG | - | chr1_2:64395079-64395098 | Msa0084780:intron | 40.0% | |
| GTGGCGTTCATTGGAAATAT+CGG | - | chr1_2:64395088-64395107 | Msa0084780:intron | 40.0% | |
| !! | TCTTCTCTTGATGGTGAAGT+AGG | - | chr1_2:64395116-64395135 | Msa0084780:intron | 40.0% |
| TTACAGGAATAGGAACCATC+TGG | + | chr1_2:64395154-64395173 | None:intergenic | 40.0% | |
| AAAAAAGGATGTGTTCCTGC+AGG | + | chr1_2:64395303-64395322 | None:intergenic | 40.0% | |
| CACGATTCCAGTAACTAACT+AGG | + | chr1_2:64395374-64395393 | None:intergenic | 40.0% | |
| CTAGTTAGTTACTGGAATCG+TGG | - | chr1_2:64395372-64395391 | Msa0084780:intron | 40.0% | |
| CTATACCCTGTGCAATAAAC+AGG | - | chr1_2:64395431-64395450 | Msa0084780:intron | 40.0% | |
| AAGCTCCTGTTTATTGCACA+GGG | + | chr1_2:64395439-64395458 | None:intergenic | 40.0% | |
| GATACTTCTTCGTTCTCAGA+TGG | + | chr1_2:64395608-64395627 | None:intergenic | 40.0% | |
| !!! | CCAAATGGCTGTGTTTTTTG+GGG | + | chr1_2:64395752-64395771 | None:intergenic | 40.0% |
| GTTACCATAACCAAGAAGAG+AGG | - | chr1_2:64395810-64395829 | Msa0084780:intron | 40.0% | |
| TTGTCCTCTCTTCTTGGTTA+TGG | + | chr1_2:64395817-64395836 | None:intergenic | 40.0% | |
| GAGAGGACAAATTACTGCAA+AGG | - | chr1_2:64395827-64395846 | Msa0084780:intron | 40.0% | |
| GAGAGGACAAATTACTGCAA+AGG | - | chr1_2:64395827-64395846 | Msa0084780:intron | 40.0% | |
| GAAGTTAAAATGGGGAGACA+AGG | - | chr1_2:64396022-64396041 | Msa0084780:intron | 40.0% | |
| GTATGTGAAAGGAATTGAGC+AGG | + | chr1_2:64396110-64396129 | None:intergenic | 40.0% | |
| GCATGAGACCTTCTAATGAA+AGG | + | chr1_2:64396311-64396330 | None:intergenic | 40.0% | |
| GTCCAGAATCGGAAATTGTT+GGG | - | chr1_2:64396485-64396504 | Msa0084780:intron | 40.0% | |
| TTCCCAACAATTTCCGATTC+TGG | + | chr1_2:64396490-64396509 | None:intergenic | 40.0% | |
| GAATCGGAAATTGTTGGGAA+CGG | - | chr1_2:64396490-64396509 | Msa0084780:intron | 40.0% | |
| GGTGTATCACTATATTGGGA+AGG | + | chr1_2:64396809-64396828 | None:intergenic | 40.0% | |
| AAGAAGACACCAAGCAAGAT+CGG | + | chr1_2:64397027-64397046 | None:intergenic | 40.0% | |
| TACAATGACTTCCTAGGTCA+AGG | + | chr1_2:64397197-64397216 | None:intergenic | 40.0% | |
| ! | CTGATTGAGTCTAAGGTTGA+TGG | - | chr1_2:64397463-64397482 | Msa0084780:intron | 40.0% |
| GGGTGTTTAATATAGCTGTG+AGG | + | chr1_2:64397685-64397704 | None:intergenic | 40.0% | |
| TTAACGTCTAGGTGAAGGTA+GGG | + | chr1_2:64397705-64397724 | None:intergenic | 40.0% | |
| ATTAACGTCTAGGTGAAGGT+AGG | + | chr1_2:64397706-64397725 | None:intergenic | 40.0% | |
| GGTAATTAACGTCTAGGTGA+AGG | + | chr1_2:64397710-64397729 | None:intergenic | 40.0% | |
| ACCTAGACGTTAATTACCTG+TGG | - | chr1_2:64397712-64397731 | Msa0084780:intron | 40.0% | |
| TCCACAGGTAATTAACGTCT+AGG | + | chr1_2:64397716-64397735 | None:intergenic | 40.0% | |
| GCAATATTCTTCGACAGGAA+TGG | + | chr1_2:64397818-64397837 | None:intergenic | 40.0% | |
| TGTTGTCTCTCTTGGATAGA+CGG | + | chr1_2:64397882-64397901 | None:intergenic | 40.0% | |
| !! | AGAAGTAAATCCTTTGGGGT+GGG | - | chr1_2:64398050-64398069 | Msa0084780:intron | 40.0% |
| CATAACCAGCATAGAGATCT+GGG | + | chr1_2:64398566-64398585 | None:intergenic | 40.0% | |
| ACATAACCAGCATAGAGATC+TGG | + | chr1_2:64398567-64398586 | None:intergenic | 40.0% | |
| ! | CTATGCTGGTTATGTTCCTA+TGG | - | chr1_2:64398572-64398591 | Msa0084780:intron | 40.0% |
| TTTGTTAGGAGTGGTGAATG+GGG | - | chr1_2:64398720-64398739 | Msa0084780:intron | 40.0% | |
| AGACTTGGAGATCAATGAGT+TGG | - | chr1_2:64398986-64399005 | Msa0084780:intron | 40.0% | |
| TAAACTGAGTATTCTGTGGG+TGG | - | chr1_2:64399532-64399551 | Msa0084780:intron | 40.0% | |
| AAACTGAGTATTCTGTGGGT+GGG | - | chr1_2:64399533-64399552 | Msa0084780:intron | 40.0% | |
| !!! | GCATGTAGTGTGTTTTGAAG+TGG | - | chr1_2:64399569-64399588 | Msa0084780:intron | 40.0% |
| AACTCAATTTATCCGGAAGG+AGG | - | chr1_2:64400047-64400066 | Msa0084780:intron | 40.0% | |
| AGAACCAATACTCTCTGAGT+TGG | - | chr1_2:64400233-64400252 | Msa0084780:intron | 40.0% | |
| ! | AAAGCCAACTCAGAGAGTAT+TGG | + | chr1_2:64400240-64400259 | None:intergenic | 40.0% |
| !! | AAGAAGAGATGGTGGAACTT+TGG | - | chr1_2:64400572-64400591 | Msa0084780:intron | 40.0% |
| GGTCATACTAATGGAACCAA+TGG | + | chr1_2:64400679-64400698 | None:intergenic | 40.0% | |
| TACAAAGCCGGTCATACTAA+TGG | + | chr1_2:64400688-64400707 | None:intergenic | 40.0% | |
| ATTCCATGGAATCTTCTGGG+AGG | - | chr1_2:64394735-64394754 | Msa0084780:three_prime_UTR | 45.0% | |
| ATGACTCATCTACGGGATTC+TGG | + | chr1_2:64394950-64394969 | None:intergenic | 45.0% | |
| CATCCTCCGCTTCTTTCATA+TGG | + | chr1_2:64394974-64394993 | None:intergenic | 45.0% | |
| CATATGAAAGAAGCGGAGGA+TGG | - | chr1_2:64394972-64394991 | Msa0084780:intron | 45.0% | |
| ! | TTTGGTTCGTCTTCTAGGTC+AGG | - | chr1_2:64395038-64395057 | Msa0084780:intron | 45.0% |
| CAAGCTCCTGTTTATTGCAC+AGG | + | chr1_2:64395440-64395459 | None:intergenic | 45.0% | |
| CCCCAAAAAACACAGCCATT+TGG | - | chr1_2:64395749-64395768 | Msa0084780:CDS | 45.0% | |
| AGAGGATATGAGCACTAGGT+AGG | + | chr1_2:64396188-64396207 | None:intergenic | 45.0% | |
| TGCTTGAGTAGGTCCAGAAT+CGG | - | chr1_2:64396474-64396493 | Msa0084780:intron | 45.0% | |
| GGTCCAGAATCGGAAATTGT+TGG | - | chr1_2:64396484-64396503 | Msa0084780:intron | 45.0% | |
| TGCTTAGTCGTGTATGGGTA+AGG | + | chr1_2:64396747-64396766 | None:intergenic | 45.0% | |
| ATTGGGAAGGTTTCCCGAAT+GGG | + | chr1_2:64396796-64396815 | None:intergenic | 45.0% | |
| TATTGGGAAGGTTTCCCGAA+TGG | + | chr1_2:64396797-64396816 | None:intergenic | 45.0% | |
| GTCACAAGATCATGAATCGG+GGG | + | chr1_2:64396999-64397018 | None:intergenic | 45.0% | |
| GGTCACAAGATCATGAATCG+GGG | + | chr1_2:64397000-64397019 | None:intergenic | 45.0% | |
| GGGTCACAAGATCATGAATC+GGG | + | chr1_2:64397001-64397020 | None:intergenic | 45.0% | |
| GGGGTCACAAGATCATGAAT+CGG | + | chr1_2:64397002-64397021 | None:intergenic | 45.0% | |
| ! | ACCTTCAGAAGAAGGGGTTT+TGG | + | chr1_2:64397120-64397139 | None:intergenic | 45.0% |
| TGACTTCCTAGGTCAAGGTT+GGG | + | chr1_2:64397192-64397211 | None:intergenic | 45.0% | |
| ATGACTTCCTAGGTCAAGGT+TGG | + | chr1_2:64397193-64397212 | None:intergenic | 45.0% | |
| TCATCCAACACATCCCAATC+TGG | + | chr1_2:64397264-64397283 | None:intergenic | 45.0% | |
| ! | GTTCTAACTTGCACGCAAAG+AGG | + | chr1_2:64397356-64397375 | None:intergenic | 45.0% |
| !! | GAGTCTAAGGTTGATGGAGA+TGG | - | chr1_2:64397469-64397488 | Msa0084780:intron | 45.0% |
| TGATGGAGATGGTAACTGTC+AGG | - | chr1_2:64397480-64397499 | Msa0084780:intron | 45.0% | |
| TATAGCTGTGAGGCAGTGTT+TGG | + | chr1_2:64397675-64397694 | None:intergenic | 45.0% | |
| TCTCTCTTGGATAGACGGTT+GGG | + | chr1_2:64397877-64397896 | None:intergenic | 45.0% | |
| ! | CAGAAGTAAATCCTTTGGGG+TGG | - | chr1_2:64398049-64398068 | Msa0084780:intron | 45.0% |
| !! | GAAGTAAATCCTTTGGGGTG+GGG | - | chr1_2:64398051-64398070 | Msa0084780:intron | 45.0% |
| ACGGGAACAAGTTGTTCAAC+AGG | - | chr1_2:64398438-64398457 | Msa0084780:intron | 45.0% | |
| !! | TAAAGGAAGCACCACCAAAC+AGG | + | chr1_2:64398491-64398510 | None:intergenic | 45.0% |
| TGCTGCAGATTGGGTATGAA+GGG | - | chr1_2:64398764-64398783 | Msa0084780:intron | 45.0% | |
| ! | AAGCCTTTTCCCACTAAGTG+GGG | + | chr1_2:64399068-64399087 | None:intergenic | 45.0% |
| ! | CAAGCCTTTTCCCACTAAGT+GGG | + | chr1_2:64399069-64399088 | None:intergenic | 45.0% |
| ! | GGGCTCACAAAGATTTTGGA+AGG | + | chr1_2:64399109-64399128 | None:intergenic | 45.0% |
| ! | GAGAGGGCTCACAAAGATTT+TGG | + | chr1_2:64399113-64399132 | None:intergenic | 45.0% |
| GGGTTTAGACCAACAAGAGA+GGG | + | chr1_2:64399129-64399148 | None:intergenic | 45.0% | |
| GGAACTGCTGTAAAAAGGTG+AGG | - | chr1_2:64399444-64399463 | Msa0084780:intron | 45.0% | |
| TGCTGTAAAAAGGTGAGGAC+CGG | - | chr1_2:64399449-64399468 | Msa0084780:intron | 45.0% | |
| CTTGTGGACTTCTGTATCTG+CGG | + | chr1_2:64399732-64399751 | None:intergenic | 45.0% | |
| AGTGTGGTGCATAATCTCTG+TGG | - | chr1_2:64399915-64399934 | Msa0084780:intron | 45.0% | |
| ATCTCTGTGGTGTGTACTGT+TGG | - | chr1_2:64399928-64399947 | Msa0084780:intron | 45.0% | |
| ! | ATTTCTGAGCTTTTGGGCAG+AGG | - | chr1_2:64400016-64400035 | Msa0084780:intron | 45.0% |
| ACACTCCAGACACACGATAA+TGG | - | chr1_2:64400093-64400112 | Msa0084780:intron | 45.0% | |
| ! | TTCAAGAGCATGGAAGAGAC+TGG | + | chr1_2:64400281-64400300 | None:intergenic | 45.0% |
| ! | ATGGTGGAACTTTGGCGTTT+AGG | - | chr1_2:64400580-64400599 | Msa0084780:intron | 45.0% |
| ! | GTTTAGGATCAGCGCACAAA+TGG | - | chr1_2:64400596-64400615 | Msa0084780:intron | 45.0% |
| TCTGGTCAGATTGTCTGCAA+TGG | + | chr1_2:64400641-64400660 | None:intergenic | 45.0% | |
| GAGGAACCAACTCTAGCTAT+GGG | + | chr1_2:64400773-64400792 | None:intergenic | 45.0% | |
| AGAATAGAAGGAGGCGAAGA+GGG | + | chr1_2:64400795-64400814 | None:intergenic | 45.0% | |
| AAGAATAGAAGGAGGCGAAG+AGG | + | chr1_2:64400796-64400815 | None:intergenic | 45.0% | |
| !! | CAAAAAAAAAAAAAAAAAAA+AGG | + | chr1_2:64395318-64395337 | None:intergenic | 5.0% |
| TGGATCCTGACGTTGTTCGA+TGG | - | chr1_2:64394534-64394553 | Msa0084780:three_prime_UTR | 50.0% | |
| GGATCCTGACGTTGTTCGAT+GGG | - | chr1_2:64394535-64394554 | Msa0084780:three_prime_UTR | 50.0% | |
| GATCCTGACGTTGTTCGATG+GGG | - | chr1_2:64394536-64394555 | Msa0084780:three_prime_UTR | 50.0% | |
| CATCCTCCCAGAAGATTCCA+TGG | + | chr1_2:64394741-64394760 | None:intergenic | 50.0% | |
| TAGCCAGTCCTGTGCATCTA+CGG | + | chr1_2:64394792-64394811 | None:intergenic | 50.0% | |
| ATGAAAGAAGCGGAGGATGG+TGG | - | chr1_2:64394975-64394994 | Msa0084780:intron | 50.0% | |
| ! | AGGATGGTGGTCCAAGTGAA+AGG | - | chr1_2:64394988-64395007 | Msa0084780:intron | 50.0% |
| ! | GGATGGTGGTCCAAGTGAAA+GGG | - | chr1_2:64394989-64395008 | Msa0084780:intron | 50.0% |
| TCGGACGAGTCTTCTCTTGA+TGG | - | chr1_2:64395107-64395126 | Msa0084780:intron | 50.0% | |
| ACCATCAAAGGCTGCTAGAC+AGG | - | chr1_2:64395630-64395649 | Msa0084780:intron | 50.0% | |
| ACCTGTCTAGCAGCCTTTGA+TGG | + | chr1_2:64395634-64395653 | None:intergenic | 50.0% | |
| !!! | GGCTGTGTTTTTTGGGGAGA+TGG | + | chr1_2:64395746-64395765 | None:intergenic | 50.0% |
| CTTTGGGTAGAACCACAGAG+TGG | - | chr1_2:64396153-64396172 | Msa0084780:intron | 50.0% | |
| TACCATCTGCGTGCTTGAGT+AGG | - | chr1_2:64396463-64396482 | Msa0084780:intron | 50.0% | |
| TGAATCGGGGGATCACAACA+CGG | + | chr1_2:64396987-64397006 | None:intergenic | 50.0% | |
| ACACCAAGCAAGATCGGTAG+GGG | + | chr1_2:64397021-64397040 | None:intergenic | 50.0% | |
| GACACCAAGCAAGATCGGTA+GGG | + | chr1_2:64397022-64397041 | None:intergenic | 50.0% | |
| AGACACCAAGCAAGATCGGT+AGG | + | chr1_2:64397023-64397042 | None:intergenic | 50.0% | |
| GCCAAAACCCCTTCTTCTGA+AGG | - | chr1_2:64397116-64397135 | Msa0084780:intron | 50.0% | |
| CTGCAGACCTTCAGAAGAAG+GGG | + | chr1_2:64397126-64397145 | None:intergenic | 50.0% | |
| GCTGCAGACCTTCAGAAGAA+GGG | + | chr1_2:64397127-64397146 | None:intergenic | 50.0% | |
| TGCTGCAGACCTTCAGAAGA+AGG | + | chr1_2:64397128-64397147 | None:intergenic | 50.0% | |
| TCCTAGGTCAAGGTTGGGAT+GGG | + | chr1_2:64397187-64397206 | None:intergenic | 50.0% | |
| TTCCTAGGTCAAGGTTGGGA+TGG | + | chr1_2:64397188-64397207 | None:intergenic | 50.0% | |
| AGAGCCAGATTGGGATGTGT+TGG | - | chr1_2:64397257-64397276 | Msa0084780:intron | 50.0% | |
| GGAGATGGTAACTGTCAGGT+TGG | - | chr1_2:64397484-64397503 | Msa0084780:intron | 50.0% | |
| GTCTCTCTTGGATAGACGGT+TGG | + | chr1_2:64397878-64397897 | None:intergenic | 50.0% | |
| ACCAGCATAGAGATCTGGGT+CGG | + | chr1_2:64398562-64398581 | None:intergenic | 50.0% | |
| CTGCTGCAGATTGGGTATGA+AGG | - | chr1_2:64398763-64398782 | Msa0084780:intron | 50.0% | |
| CACACACACACATGCATGCA+TGG | + | chr1_2:64398842-64398861 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTTTCCCACTAAG+TGG | + | chr1_2:64399070-64399089 | None:intergenic | 50.0% |
| CCACTTAGTGGGAAAAGGCT+TGG | - | chr1_2:64399067-64399086 | Msa0084780:intron | 50.0% | |
| CTTTGTGAGCCCTCTCTTGT+TGG | - | chr1_2:64399117-64399136 | Msa0084780:intron | 50.0% | |
| GGGGTTTAGACCAACAAGAG+AGG | + | chr1_2:64399130-64399149 | None:intergenic | 50.0% | |
| GGAGGAACCAACTCTAGCTA+TGG | + | chr1_2:64400774-64400793 | None:intergenic | 50.0% | |
| CAATAGTTCAACACCGCGCA+AGG | + | chr1_2:64400990-64401009 | None:intergenic | 50.0% | |
| TTTCCACATGGTCGATCCCC+AGG | - | chr1_2:64394584-64394603 | Msa0084780:three_prime_UTR | 55.0% | |
| ! | GATCCCCAGGTGTCGTAACT+CGG | - | chr1_2:64394597-64394616 | Msa0084780:three_prime_UTR | 55.0% |
| ACACCGAGTTACGACACCTG+GGG | + | chr1_2:64394603-64394622 | None:intergenic | 55.0% | |
| CACACCGAGTTACGACACCT+GGG | + | chr1_2:64394604-64394623 | None:intergenic | 55.0% | |
| TCACACCGAGTTACGACACC+TGG | + | chr1_2:64394605-64394624 | None:intergenic | 55.0% | |
| CATCCGTAGATGCACAGGAC+TGG | - | chr1_2:64394786-64394805 | Msa0084780:CDS | 55.0% | |
| TGGGTAGAACCACAGAGTGG+AGG | - | chr1_2:64396156-64396175 | Msa0084780:intron | 55.0% | |
| GGGTAGAACCACAGAGTGGA+GGG | - | chr1_2:64396157-64396176 | Msa0084780:intron | 55.0% | |
| GGTAGAACCACAGAGTGGAG+GGG | - | chr1_2:64396158-64396177 | Msa0084780:intron | 55.0% | |
| GACCTACTCAAGCACGCAGA+TGG | + | chr1_2:64396468-64396487 | None:intergenic | 55.0% | |
| GGAAATTGTTGGGAACGGCC+AGG | - | chr1_2:64396495-64396514 | Msa0084780:intron | 55.0% | |
| ! | ACCGCTTCCACGCGTTTTTG+CGG | + | chr1_2:64396525-64396544 | None:intergenic | 55.0% |
| ACGCGTGGAAGCGGTGAAAT+CGG | - | chr1_2:64396530-64396549 | Msa0084780:intron | 55.0% | |
| GCCGCGTCTCCTTGAAGTAT+CGG | - | chr1_2:64396552-64396571 | Msa0084780:intron | 55.0% | |
| CCCGATACTTCAAGGAGACG+CGG | + | chr1_2:64396556-64396575 | None:intergenic | 55.0% | |
| ! | CCGCGTCTCCTTGAAGTATC+GGG | - | chr1_2:64396553-64396572 | Msa0084780:intron | 55.0% |
| CCTGCGAACCCGATACTTCA+AGG | + | chr1_2:64396564-64396583 | None:intergenic | 55.0% | |
| !! | CCTTGAAGTATCGGGTTCGC+AGG | - | chr1_2:64396561-64396580 | Msa0084780:intron | 55.0% |
| !! | GAAGTATCGGGTTCGCAGGT+CGG | - | chr1_2:64396565-64396584 | Msa0084780:intron | 55.0% |
| GAATCGGGGGATCACAACAC+GGG | + | chr1_2:64396986-64397005 | None:intergenic | 55.0% | |
| TGACCCCTACCGATCTTGCT+TGG | - | chr1_2:64397015-64397034 | Msa0084780:CDS | 55.0% | |
| TCCCATCCCAACCTTGACCT+AGG | - | chr1_2:64397183-64397202 | Msa0084780:intron | 55.0% | |
| CTCTTGGATAGACGGTTGGG+TGG | + | chr1_2:64397874-64397893 | None:intergenic | 55.0% | |
| !! | AATCCTTTGGGGTGGGGTAG+AGG | - | chr1_2:64398057-64398076 | Msa0084780:intron | 55.0% |
| !! | ATCCTTTGGGGTGGGGTAGA+GGG | - | chr1_2:64398058-64398077 | Msa0084780:intron | 55.0% |
| TCCGACCCAGATCTCTATGC+TGG | - | chr1_2:64398558-64398577 | Msa0084780:intron | 55.0% | |
| GTTGCAGGCTGCTGCAGATT+GGG | - | chr1_2:64398755-64398774 | Msa0084780:intron | 55.0% | |
| ACTAAGTGGGGCCCTCTACA+TGG | + | chr1_2:64399056-64399075 | None:intergenic | 55.0% | |
| ATGTAGAGGGCCCCACTTAG+TGG | - | chr1_2:64399055-64399074 | Msa0084780:intron | 55.0% | |
| TGTAGAGGGCCCCACTTAGT+GGG | - | chr1_2:64399056-64399075 | Msa0084780:intron | 55.0% | |
| !! | TATGGGCACTGGCAGTGTCA+AGG | + | chr1_2:64400756-64400775 | None:intergenic | 55.0% |
| CCAACTCTAGCTATGGGCAC+TGG | + | chr1_2:64400767-64400786 | None:intergenic | 55.0% | |
| CCAGTGCCCATAGCTAGAGT+TGG | - | chr1_2:64400764-64400783 | Msa0084780:CDS | 55.0% | |
| ATAGAAGGAGGCGAAGAGGG+AGG | + | chr1_2:64400792-64400811 | None:intergenic | 55.0% | |
| AGGCCCCATCGAACAACGTC+AGG | + | chr1_2:64394542-64394561 | None:intergenic | 60.0% | |
| ACACCTGGGGATCGACCATG+TGG | + | chr1_2:64394590-64394609 | None:intergenic | 60.0% | |
| GCGAGCATCCGTAGATGCAC+AGG | - | chr1_2:64394781-64394800 | Msa0084780:CDS | 60.0% | |
| CACATAACGCTGCGACCTGC+AGG | - | chr1_2:64395285-64395304 | Msa0084780:intron | 60.0% | |
| ! | ACGCGTTTTTGCGGCGATCC+TGG | + | chr1_2:64396516-64396535 | None:intergenic | 60.0% |
| AGGATCGCCGCAAAAACGCG+TGG | - | chr1_2:64396515-64396534 | Msa0084780:intron | 60.0% | |
| GCCGCAAAAACGCGTGGAAG+CGG | - | chr1_2:64396521-64396540 | Msa0084780:intron | 60.0% | |
| TCACGGGAGCAGCACCAGTT+TGG | + | chr1_2:64397747-64397766 | None:intergenic | 60.0% | |
| AACCCTCTACCCCACCCCAA+AGG | + | chr1_2:64398063-64398082 | None:intergenic | 60.0% | |
| GGGCGATCATGTCACGTTGC+AGG | - | chr1_2:64398740-64398759 | Msa0084780:intron | 60.0% | |
| CGTTGCAGGCTGCTGCAGAT+TGG | - | chr1_2:64398754-64398773 | Msa0084780:intron | 60.0% | |
| GGGCCCCACTTAGTGGGAAA+AGG | - | chr1_2:64399062-64399081 | Msa0084780:intron | 60.0% | |
| AGGTGTGCCCCTCCACTCTG+TGG | + | chr1_2:64396168-64396187 | None:intergenic | 65.0% | |
| ! | CGGGTTCGCAGGTCGGTTCA+CGG | - | chr1_2:64396572-64396591 | Msa0084780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 64394437 | 64401020 | 64394437 | ID=Msa0084780;Name=Msa0084780 |
| chr1_2 | mRNA | 64394437 | 64401020 | 64394437 | ID=Msa0084780-mRNA-1;Parent=Msa0084780;Name=Msa0084780-mRNA-1;_AED=0.10;_eAED=0.10;_QI=78|0.7|0.81|0.90|1|1|11|324|400 |
| chr1_2 | exon | 64394437 | 64394911 | 64394437 | ID=Msa0084780-mRNA-1:exon:21783;Parent=Msa0084780-mRNA-1 |
| chr1_2 | exon | 64395389 | 64395445 | 64395389 | ID=Msa0084780-mRNA-1:exon:21782;Parent=Msa0084780-mRNA-1 |
| chr1_2 | exon | 64395715 | 64395788 | 64395715 | ID=Msa0084780-mRNA-1:exon:21781;Parent=Msa0084780-mRNA-1 |
| chr1_2 | exon | 64396681 | 64396729 | 64396681 | ID=Msa0084780-mRNA-1:exon:21780;Parent=Msa0084780-mRNA-1 |
| chr1_2 | exon | 64396832 | 64396905 | 64396832 | ID=Msa0084780-mRNA-1:exon:21779;Parent=Msa0084780-mRNA-1 |
| chr1_2 | exon | 64396998 | 64397072 | 64396998 | ID=Msa0084780-mRNA-1:exon:21778;Parent=Msa0084780-mRNA-1 |
| chr1_2 | exon | 64397956 | 64398010 | 64397956 | ID=Msa0084780-mRNA-1:exon:21777;Parent=Msa0084780-mRNA-1 |
| chr1_2 | exon | 64399806 | 64399879 | 64399806 | ID=Msa0084780-mRNA-1:exon:21776;Parent=Msa0084780-mRNA-1 |
| chr1_2 | exon | 64399972 | 64400004 | 64399972 | ID=Msa0084780-mRNA-1:exon:21775;Parent=Msa0084780-mRNA-1 |
| chr1_2 | exon | 64400288 | 64400523 | 64400288 | ID=Msa0084780-mRNA-1:exon:21774;Parent=Msa0084780-mRNA-1 |
| chr1_2 | exon | 64400618 | 64401020 | 64400618 | ID=Msa0084780-mRNA-1:exon:21773;Parent=Msa0084780-mRNA-1 |
| chr1_2 | five_prime_UTR | 64400943 | 64401020 | 64400943 | ID=Msa0084780-mRNA-1:five_prime_utr;Parent=Msa0084780-mRNA-1 |
| chr1_2 | CDS | 64400618 | 64400942 | 64400618 | ID=Msa0084780-mRNA-1:cds;Parent=Msa0084780-mRNA-1 |
| chr1_2 | CDS | 64400288 | 64400523 | 64400288 | ID=Msa0084780-mRNA-1:cds;Parent=Msa0084780-mRNA-1 |
| chr1_2 | CDS | 64399972 | 64400004 | 64399972 | ID=Msa0084780-mRNA-1:cds;Parent=Msa0084780-mRNA-1 |
| chr1_2 | CDS | 64399806 | 64399879 | 64399806 | ID=Msa0084780-mRNA-1:cds;Parent=Msa0084780-mRNA-1 |
| chr1_2 | CDS | 64397956 | 64398010 | 64397956 | ID=Msa0084780-mRNA-1:cds;Parent=Msa0084780-mRNA-1 |
| chr1_2 | CDS | 64396998 | 64397072 | 64396998 | ID=Msa0084780-mRNA-1:cds;Parent=Msa0084780-mRNA-1 |
| chr1_2 | CDS | 64396832 | 64396905 | 64396832 | ID=Msa0084780-mRNA-1:cds;Parent=Msa0084780-mRNA-1 |
| chr1_2 | CDS | 64396681 | 64396729 | 64396681 | ID=Msa0084780-mRNA-1:cds;Parent=Msa0084780-mRNA-1 |
| chr1_2 | CDS | 64395715 | 64395788 | 64395715 | ID=Msa0084780-mRNA-1:cds;Parent=Msa0084780-mRNA-1 |
| chr1_2 | CDS | 64395389 | 64395445 | 64395389 | ID=Msa0084780-mRNA-1:cds;Parent=Msa0084780-mRNA-1 |
| chr1_2 | CDS | 64394761 | 64394911 | 64394761 | ID=Msa0084780-mRNA-1:cds;Parent=Msa0084780-mRNA-1 |
| chr1_2 | three_prime_UTR | 64394437 | 64394760 | 64394437 | ID=Msa0084780-mRNA-1:three_prime_utr;Parent=Msa0084780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
