Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503200 | KEH19492.1 | 91.146 | 192 | 9 | 2 | 46 | 229 | 9 | 200 | 1.51e-123 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503200 | A0A072TQ21 | 91.146 | 192 | 9 | 2 | 46 | 229 | 9 | 200 | 7.21e-124 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004860 | Msa0503200 | 0.848020 | 7.996721e-60 | -8.615850e-47 |
| Msa0004920 | Msa0503200 | 0.839813 | 1.266172e-57 | -8.615850e-47 |
| Msa0020930 | Msa0503200 | 0.820784 | 5.711135e-53 | -8.615850e-47 |
| Msa0043980 | Msa0503200 | 0.802496 | 5.458464e-49 | -8.615850e-47 |
| Msa0051770 | Msa0503200 | 0.840547 | 8.143945e-58 | -8.615850e-47 |
| Msa0054750 | Msa0503200 | 0.804332 | 2.272837e-49 | -8.615850e-47 |
| Msa0056030 | Msa0503200 | 0.814488 | 1.501664e-51 | -8.615850e-47 |
| Msa0057140 | Msa0503200 | 0.832143 | 1.118147e-55 | -8.615850e-47 |
| Msa0068680 | Msa0503200 | 0.808393 | 3.167044e-50 | -8.615850e-47 |
| Msa0083280 | Msa0503200 | 0.812884 | 3.386842e-51 | -8.615850e-47 |
| Msa0084080 | Msa0503200 | 0.810416 | 1.165058e-50 | -8.615850e-47 |
| Msa0084780 | Msa0503200 | 0.812337 | 4.460655e-51 | -8.615850e-47 |
| Msa0086420 | Msa0503200 | 0.803819 | 2.905298e-49 | -8.615850e-47 |
| Msa0109690 | Msa0503200 | 0.817391 | 3.378151e-52 | -8.615850e-47 |
| Msa0113750 | Msa0503200 | 0.820534 | 6.519262e-53 | -8.615850e-47 |
| Msa0137840 | Msa0503200 | 0.810148 | 1.331105e-50 | -8.615850e-47 |
| Msa0159180 | Msa0503200 | 0.807533 | 4.826444e-50 | -8.615850e-47 |
| Msa0159930 | Msa0503200 | 0.822781 | 1.970858e-53 | -8.615850e-47 |
| Msa0168720 | Msa0503200 | 0.815446 | 9.206735e-52 | -8.615850e-47 |
| Msa0173990 | Msa0503200 | 0.810172 | 1.315581e-50 | -8.615850e-47 |
| Msa0183050 | Msa0503200 | 0.810132 | 1.341964e-50 | -8.615850e-47 |
| Msa0184780 | Msa0503200 | 0.801301 | 9.606618e-49 | -8.615850e-47 |
| Msa0191050 | Msa0503200 | 0.851574 | 8.120934e-61 | -8.615850e-47 |
| Msa0217680 | Msa0503200 | 0.841283 | 5.218989e-58 | -8.615850e-47 |
| Msa0220580 | Msa0503200 | 0.810298 | 1.235650e-50 | -8.615850e-47 |
| Msa0222620 | Msa0503200 | 0.805714 | 1.168436e-49 | -8.615850e-47 |
| Msa0233350 | Msa0503200 | 0.856858 | 2.421400e-62 | -8.615850e-47 |
| Msa0369440 | Msa0503200 | 0.827524 | 1.491688e-54 | -8.615850e-47 |
| Msa0372660 | Msa0503200 | 0.801785 | 7.641404e-49 | -8.615850e-47 |
| Msa0376910 | Msa0503200 | 0.813791 | 2.140371e-51 | -8.615850e-47 |
| Msa0385490 | Msa0503200 | 0.800772 | 1.232296e-48 | -8.615850e-47 |
| Msa0399340 | Msa0503200 | 0.828356 | 9.410188e-55 | -8.615850e-47 |
| Msa0409270 | Msa0503200 | 0.929717 | 4.651438e-93 | -8.615850e-47 |
| Msa0412840 | Msa0503200 | 0.809175 | 2.154957e-50 | -8.615850e-47 |
| Msa0433360 | Msa0503200 | 0.838295 | 3.131341e-57 | -8.615850e-47 |
| Msa0433640 | Msa0503200 | 0.813347 | 2.679536e-51 | -8.615850e-47 |
| Msa0442200 | Msa0503200 | 0.840764 | 7.142315e-58 | -8.615850e-47 |
| Msa0463550 | Msa0503200 | 0.806638 | 7.463873e-50 | -8.615850e-47 |
| Msa0477080 | Msa0503200 | 0.863841 | 1.865814e-64 | -8.615850e-47 |
| Msa0479970 | Msa0503200 | 0.814517 | 1.479668e-51 | -8.615850e-47 |
| Msa0481530 | Msa0503200 | 0.808707 | 2.712875e-50 | -8.615850e-47 |
| Msa0481810 | Msa0503200 | 0.803580 | 3.257297e-49 | -8.615850e-47 |
| Msa0257500 | Msa0503200 | 0.821127 | 4.762912e-53 | -8.615850e-47 |
| Msa0264930 | Msa0503200 | 0.802838 | 4.638632e-49 | -8.615850e-47 |
| Msa0265380 | Msa0503200 | 0.806695 | 7.260939e-50 | -8.615850e-47 |
| Msa0267310 | Msa0503200 | 0.806608 | 7.575175e-50 | -8.615850e-47 |
| Msa0279220 | Msa0503200 | 0.804109 | 2.529127e-49 | -8.615850e-47 |
| Msa0279240 | Msa0503200 | 0.800950 | 1.133109e-48 | -8.615850e-47 |
| Msa0280090 | Msa0503200 | 0.802562 | 5.289025e-49 | -8.615850e-47 |
| Msa0291500 | Msa0503200 | 0.816257 | 6.071594e-52 | -8.615850e-47 |
| Msa0303360 | Msa0503200 | 0.800308 | 1.531744e-48 | -8.615850e-47 |
| Msa0309770 | Msa0503200 | 0.824136 | 9.506108e-54 | -8.615850e-47 |
| Msa0314720 | Msa0503200 | 0.810487 | 1.124913e-50 | -8.615850e-47 |
| Msa0317510 | Msa0503200 | 0.800141 | 1.656208e-48 | -8.615850e-47 |
| Msa0318980 | Msa0503200 | 0.811633 | 6.348939e-51 | -8.615850e-47 |
| Msa0336420 | Msa0503200 | 0.800638 | 1.312288e-48 | -8.615850e-47 |
| Msa0484780 | Msa0503200 | 0.807203 | 5.667946e-50 | -8.615850e-47 |
| Msa0485120 | Msa0503200 | 0.840599 | 7.891423e-58 | -8.615850e-47 |
| Msa0489610 | Msa0503200 | 0.822851 | 1.898621e-53 | -8.615850e-47 |
| Msa0493630 | Msa0503200 | 0.838957 | 2.111645e-57 | -8.615850e-47 |
| Msa0500360 | Msa0503200 | 0.815041 | 1.132958e-51 | -8.615850e-47 |
| Msa0502880 | Msa0503200 | 0.805143 | 1.538852e-49 | -8.615850e-47 |
| Msa0503200 | Msa0521430 | 0.825538 | 4.439893e-54 | -8.615850e-47 |
| Msa0503200 | Msa0521500 | 0.814628 | 1.398229e-51 | -8.615850e-47 |
| Msa0503200 | Msa0521540 | 0.808398 | 3.158822e-50 | -8.615850e-47 |
| Msa0503200 | Msa0555200 | 0.806680 | 7.314498e-50 | -8.615850e-47 |
| Msa0503200 | Msa0555450 | 0.809268 | 2.058075e-50 | -8.615850e-47 |
| Msa0503200 | Msa0575470 | 0.801957 | 7.047055e-49 | -8.615850e-47 |
| Msa0503200 | Msa0577500 | 0.816551 | 5.216548e-52 | -8.615850e-47 |
| Msa0503200 | Msa0607050 | 0.809057 | 2.284104e-50 | -8.615850e-47 |
| Msa0503200 | Msa0608710 | 0.835166 | 1.965483e-56 | -8.615850e-47 |
| Msa0503200 | Msa0617580 | 0.801452 | 8.945883e-49 | -8.615850e-47 |
| Msa0503200 | Msa0621490 | 0.801755 | 7.751605e-49 | -8.615850e-47 |
| Msa0503200 | Msa0628740 | 0.800379 | 1.481473e-48 | -8.615850e-47 |
| Msa0503200 | Msa0647500 | 0.805354 | 1.390130e-49 | -8.615850e-47 |
| Msa0503200 | Msa0648080 | 0.800399 | 1.468125e-48 | -8.615850e-47 |
| Msa0503200 | Msa0661190 | -0.802585 | 5.231596e-49 | -8.615850e-47 |
| Msa0503200 | Msa0666140 | 0.802654 | 5.063459e-49 | -8.615850e-47 |
| Msa0503200 | Msa0687020 | 0.826802 | 2.221406e-54 | -8.615850e-47 |
| Msa0503200 | Msa0690150 | 0.807836 | 4.160459e-50 | -8.615850e-47 |
| Msa0503200 | Msa0691900 | 0.815525 | 8.842278e-52 | -8.615850e-47 |
| Msa0503200 | Msa0709500 | 0.800515 | 1.390322e-48 | -8.615850e-47 |
| Msa0503200 | Msa0711100 | 0.813341 | 2.688376e-51 | -8.615850e-47 |
| Msa0503200 | Msa0711890 | 0.803224 | 3.860606e-49 | -8.615850e-47 |
| Msa0503200 | Msa0716840 | 0.801970 | 7.001311e-49 | -8.615850e-47 |
| Msa0503200 | Msa0726830 | 0.811832 | 5.746529e-51 | -8.615850e-47 |
| Msa0503200 | Msa0739120 | 0.802749 | 4.840085e-49 | -8.615850e-47 |
| Msa0503200 | Msa0740510 | 0.801158 | 1.027334e-48 | -8.615850e-47 |
| Msa0503200 | Msa0750430 | 0.838945 | 2.126570e-57 | -8.615850e-47 |
| Msa0503200 | Msa0769920 | 0.803603 | 3.221638e-49 | -8.615850e-47 |
| Msa0503200 | Msa0788710 | 0.813493 | 2.488891e-51 | -8.615850e-47 |
| Msa0503200 | Msa0794670 | 0.805241 | 1.467993e-49 | -8.615850e-47 |
| Msa0503200 | Msa0795920 | 0.802257 | 6.111567e-49 | -8.615850e-47 |
| Msa0503200 | Msa0816590 | 0.801238 | 9.896394e-49 | -8.615850e-47 |
| Msa0503200 | Msa0832150 | 0.812279 | 4.591620e-51 | -8.615850e-47 |
| Msa0503200 | Msa0866550 | 0.818231 | 2.183965e-52 | -8.615850e-47 |
| Msa0503200 | Msa0869100 | 0.813526 | 2.447964e-51 | -8.615850e-47 |
| Msa0503200 | Msa0869120 | 0.805429 | 1.340437e-49 | -8.615850e-47 |
| Msa0503200 | Msa0876200 | 0.809466 | 1.865722e-50 | -8.615850e-47 |
| Msa0503200 | Msa0877410 | 0.805283 | 1.438701e-49 | -8.615850e-47 |
| Msa0503200 | Msa0930140 | 0.807283 | 5.452091e-50 | -8.615850e-47 |
| Msa0503200 | Msa0933230 | 0.803128 | 4.041240e-49 | -8.615850e-47 |
| Msa0503200 | Msa0933310 | 0.825861 | 3.720551e-54 | -8.615850e-47 |
| Msa0503200 | Msa0942070 | 0.809949 | 1.469137e-50 | -8.615850e-47 |
| Msa0503200 | Msa0970030 | 0.809936 | 1.478927e-50 | -8.615850e-47 |
| Msa0503200 | Msa0971090 | 0.826794 | 2.230389e-54 | -8.615850e-47 |
| Msa0503200 | Msa1012830 | 0.823279 | 1.508744e-53 | -8.615850e-47 |
| Msa0503200 | Msa1021540 | 0.815189 | 1.050320e-51 | -8.615850e-47 |
| Msa0503200 | Msa1023920 | 0.805516 | 1.285591e-49 | -8.615850e-47 |
| Msa0503200 | Msa1024750 | 0.821491 | 3.925653e-53 | -8.615850e-47 |
| Msa0503200 | Msa1034150 | 0.830472 | 2.880932e-55 | -8.615850e-47 |
| Msa0503200 | Msa1058750 | 0.806886 | 6.615157e-50 | -8.615850e-47 |
| Msa0503200 | Msa1062920 | 0.803031 | 4.232246e-49 | -8.615850e-47 |
| Msa0503200 | Msa1082500 | 0.815235 | 1.025608e-51 | -8.615850e-47 |
| Msa0503200 | Msa1107900 | 0.800295 | 1.540813e-48 | -8.615850e-47 |
| Msa0503200 | Msa1114410 | 0.807972 | 3.892885e-50 | -8.615850e-47 |
| Msa0503200 | Msa1132890 | 0.803504 | 3.377371e-49 | -8.615850e-47 |
| Msa0503200 | Msa1171870 | 0.803820 | 2.904510e-49 | -8.615850e-47 |
| Msa0503200 | Msa1174040 | 0.811080 | 8.371102e-51 | -8.615850e-47 |
| Msa0503200 | Msa1190930 | 0.806515 | 7.924199e-50 | -8.615850e-47 |
| Msa0503200 | Msa1201560 | 0.810261 | 1.258786e-50 | -8.615850e-47 |
| Msa0503200 | Msa1203250 | 0.830458 | 2.903340e-55 | -8.615850e-47 |
| Msa0503200 | Msa1204530 | 0.812013 | 5.247559e-51 | -8.615850e-47 |
| Msa0503200 | Msa1204630 | 0.803230 | 3.849500e-49 | -8.615850e-47 |
| Msa0503200 | Msa1247250 | 0.803311 | 3.702824e-49 | -8.615850e-47 |
| Msa0503200 | Msa1250890 | 0.801424 | 9.065564e-49 | -8.615850e-47 |
| Msa0503200 | Msa1276440 | 0.809061 | 2.279329e-50 | -8.615850e-47 |
| Msa0503200 | Msa1304820 | 0.830242 | 3.279927e-55 | -8.615850e-47 |
| Msa0503200 | Msa1305340 | 0.814652 | 1.381815e-51 | -8.615850e-47 |
| Msa0503200 | Msa1305660 | 0.812306 | 4.531289e-51 | -8.615850e-47 |
| Msa0503200 | Msa1306430 | 0.810315 | 1.225431e-50 | -8.615850e-47 |
| Msa0503200 | Msa1306840 | 0.815104 | 1.097044e-51 | -8.615850e-47 |
| Msa0503200 | Msa1331320 | 0.800763 | 1.237412e-48 | -8.615850e-47 |
| Msa0503200 | Msa1345040 | 0.819735 | 9.934747e-53 | -8.615850e-47 |
| Msa0503200 | Msa1348560 | 0.822618 | 2.150842e-53 | -8.615850e-47 |
| Msa0503200 | Msa1353980 | 0.812297 | 4.551415e-51 | -8.615850e-47 |
| Msa0503200 | Msa1356440 | 0.810615 | 1.055298e-50 | -8.615850e-47 |
| Msa0503200 | Msa1358610 | -0.810250 | 1.265372e-50 | -8.615850e-47 |
| Msa0503200 | Msa1397120 | 0.811603 | 6.447515e-51 | -8.615850e-47 |
| Msa0503200 | Msa1403340 | 0.819488 | 1.131104e-52 | -8.615850e-47 |
| Msa0503200 | Msa1403890 | 0.815589 | 8.554492e-52 | -8.615850e-47 |
| Msa0503200 | Msa1424450 | 0.822505 | 2.285952e-53 | -8.615850e-47 |
| Msa0503200 | Msa1426030 | 0.801540 | 8.581597e-49 | -8.615850e-47 |
| Msa0503200 | Msa1435370 | 0.822672 | 2.090052e-53 | -8.615850e-47 |
| Msa0503200 | Msa1440000 | 0.806414 | 8.321896e-50 | -8.615850e-47 |
| Msa0503200 | Msa1440910 | 0.810348 | 1.205333e-50 | -8.615850e-47 |
| Msa0503200 | Msa1444740 | 0.834486 | 2.915267e-56 | -8.615850e-47 |
| Msa0503200 | Msa1449820 | 0.816105 | 6.562738e-52 | -8.615850e-47 |
| Msa0503200 | Msa1460050 | 0.804998 | 1.650107e-49 | -8.615850e-47 |
| Msa0503200 | Msa1461280 | 0.854492 | 1.187205e-61 | -8.615850e-47 |
| Msa0503200 | Msa1462840 | 0.809076 | 2.262180e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503200 | MtrunA17_Chr4g0027321 | 54.598 | 174 | 62 | 6 | 60 | 227 | 130 | 292 | 4.98e-49 | 162 |
| Msa0503200 | MtrunA17_Chr3g0119711 | 38.835 | 206 | 105 | 9 | 33 | 227 | 3 | 198 | 1.90e-30 | 111 |
| Msa0503200 | MtrunA17_Chr3g0120641 | 36.364 | 220 | 116 | 8 | 28 | 227 | 26 | 241 | 5.41e-21 | 87.8 |
| Msa0503200 | MtrunA17_Chr3g0120941 | 36.041 | 197 | 100 | 10 | 44 | 227 | 59 | 242 | 2.61e-18 | 80.9 |
| Msa0503200 | MtrunA17_Chr3g0120951 | 36.686 | 169 | 85 | 9 | 68 | 227 | 51 | 206 | 8.24e-18 | 78.6 |
| Msa0503200 | MtrunA17_Chr3g0120591 | 34.615 | 208 | 123 | 6 | 30 | 227 | 18 | 222 | 1.15e-17 | 78.6 |
| Msa0503200 | MtrunA17_Chr3g0120961 | 37.179 | 156 | 71 | 8 | 74 | 221 | 47 | 183 | 2.30e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATGACAGCTTTCCATTT+TGG | 0.200035 | 3_4:-46185335 | Msa0503200:CDS |
| CACTAATGTTTCTGTATAAT+TGG | 0.200274 | 3_4:-46184567 | Msa0503200:three_prime_UTR |
| GCTTTAAAAGTAATGTAATA+TGG | 0.262097 | 3_4:+46184823 | None:intergenic |
| GATTTCAGCCGTTTCGATTT+CGG | 0.272727 | 3_4:+46185540 | None:intergenic |
| TGGTTCTTTGTATACGAATA+AGG | 0.284069 | 3_4:-46185298 | Msa0503200:CDS |
| GAATCTTCTGGATCCGGTTT+CGG | 0.312704 | 3_4:+46185399 | None:intergenic |
| GGTTATGGTTATGCTTGTTT+TGG | 0.320799 | 3_4:-46184675 | Msa0503200:three_prime_UTR |
| TCACGACGCTTATACCAAAA+TGG | 0.333746 | 3_4:+46185321 | None:intergenic |
| TCACTATACTCAGAATCTTC+TGG | 0.339930 | 3_4:+46185387 | None:intergenic |
| GAAATCGAAACGGCTGAAAT+CGG | 0.340115 | 3_4:-46185538 | Msa0503200:CDS |
| AATTAATTAAATAAATATGA+TGG | 0.373275 | 3_4:-46184624 | Msa0503200:three_prime_UTR |
| AATACACACCGCCATGGTTA+TGG | 0.393191 | 3_4:-46184690 | Msa0503200:three_prime_UTR |
| ACTTTATCAAACACAAAAGT+TGG | 0.407632 | 3_4:+46184892 | None:intergenic |
| ATGAAACACTCTTTGACAAC+AGG | 0.409120 | 3_4:+46184724 | None:intergenic |
| GTGTTTCAAAATGTCGAAAT+CGG | 0.413339 | 3_4:-46185571 | Msa0503200:exon |
| GCTGAAATCGGAACCGAAAC+CGG | 0.414648 | 3_4:-46185412 | Msa0503200:CDS |
| AAATCGAAACGGCTGAAATC+GGG | 0.418006 | 3_4:-46185537 | Msa0503200:CDS |
| CTACTTCTTTATATGCTCCT+AGG | 0.435411 | 3_4:-46184846 | Msa0503200:CDS |
| ATCTGTGGAGGAGGAGGAGG+AGG | 0.436107 | 3_4:-46185442 | Msa0503200:CDS |
| TACTCAGAATCTTCTGGATC+CGG | 0.439841 | 3_4:+46185393 | None:intergenic |
| TGCAGAGGGGTTTGAGAGTA+CGG | 0.440533 | 3_4:+46185049 | None:intergenic |
| TAAGGCTTGGAGGGATCGTC+AGG | 0.442047 | 3_4:-46185280 | Msa0503200:CDS |
| GGAGGAGAAACGGCTGAAAT+CGG | 0.450703 | 3_4:-46185424 | Msa0503200:CDS |
| AGAAAGAAATGAAACTCTAA+AGG | 0.454475 | 3_4:+46184499 | None:intergenic |
| TTCATCTGTGGAGGAGGAGG+AGG | 0.455235 | 3_4:-46185445 | Msa0503200:CDS |
| CAAAATGTCGAAATCGGAAC+AGG | 0.457893 | 3_4:-46185565 | Msa0503200:exon |
| CACTGTCCACCACGTTGTGC+TGG | 0.467693 | 3_4:-46185108 | Msa0503200:CDS |
| TACGCTGCAATACATGAGTC+TGG | 0.467899 | 3_4:+46184758 | None:intergenic |
| AAAGTAATGTAATATGGCCT+AGG | 0.487724 | 3_4:+46184829 | None:intergenic |
| TAAAGCAAAAGCAGAAGCAA+AGG | 0.500294 | 3_4:-46184806 | Msa0503200:CDS |
| ATTAATTAAATAAATATGAT+GGG | 0.503492 | 3_4:-46184623 | Msa0503200:three_prime_UTR |
| CAATCAAACGAATATTAAGC+AGG | 0.504217 | 3_4:-46185007 | Msa0503200:intron |
| TGAGGATGAGGAGGATAAGC+AGG | 0.508361 | 3_4:-46185484 | Msa0503200:CDS |
| ACACGATGAAGATTCATATG+AGG | 0.514467 | 3_4:-46185502 | Msa0503200:CDS |
| CTTTGTATACGAATAAGGCT+TGG | 0.515687 | 3_4:-46185293 | Msa0503200:CDS |
| AGATTCATCTGTGGAGGAGG+AGG | 0.522683 | 3_4:-46185448 | Msa0503200:CDS |
| GTCTGGAAAGTTGTTAGAGC+AGG | 0.523457 | 3_4:+46184775 | None:intergenic |
| GTTGTCAAGTGTACCCATCC+TGG | 0.532074 | 3_4:-46184871 | Msa0503200:CDS |
| TGTATACGAATAAGGCTTGG+AGG | 0.537395 | 3_4:-46185290 | Msa0503200:CDS |
| AAAGCAAAAGCAGAAGCAAA+GGG | 0.538089 | 3_4:-46184805 | Msa0503200:CDS |
| ACAAGATTCATCTGTGGAGG+AGG | 0.546974 | 3_4:-46185451 | Msa0503200:CDS |
| TGAAGATTCATATGAGGATG+AGG | 0.548643 | 3_4:-46185496 | Msa0503200:CDS |
| CACATCATCGCTTAAGTCGA+GGG | 0.551344 | 3_4:+46185074 | None:intergenic |
| AACAGGAACCGAAATCGAAA+CGG | 0.558710 | 3_4:-46185548 | Msa0503200:CDS |
| CTTCAAAGCAGCATTGCAGA+GGG | 0.559702 | 3_4:+46185035 | None:intergenic |
| GCATATAAAGAAGTAGCACC+AGG | 0.567371 | 3_4:+46184853 | None:intergenic |
| TGTCCACCACGTTGTGCTGG+CGG | 0.572730 | 3_4:-46185105 | Msa0503200:CDS |
| CATTAGTGACATAAATAACA+TGG | 0.577507 | 3_4:+46184582 | None:intergenic |
| GTATACGAATAAGGCTTGGA+GGG | 0.581642 | 3_4:-46185289 | Msa0503200:CDS |
| TAAAGAAGTAGCACCAGGAT+GGG | 0.590468 | 3_4:+46184858 | None:intergenic |
| GCACATCATCGCTTAAGTCG+AGG | 0.599300 | 3_4:+46185073 | None:intergenic |
| ATAAAGAAGTAGCACCAGGA+TGG | 0.610411 | 3_4:+46184857 | None:intergenic |
| CAGCACAACGTGGTGGACAG+TGG | 0.610706 | 3_4:+46185109 | None:intergenic |
| GAAACAAGATTCATCTGTGG+AGG | 0.613961 | 3_4:-46185454 | Msa0503200:CDS |
| AAATCTAATACACACCGCCA+TGG | 0.616867 | 3_4:-46184696 | Msa0503200:exon |
| TCTTCAAAGCAGCATTGCAG+AGG | 0.630589 | 3_4:+46185034 | None:intergenic |
| AGATTCATATGAGGATGAGG+AGG | 0.633765 | 3_4:-46185493 | Msa0503200:CDS |
| GAAACGGCTGAAATCGGGAT+CGG | 0.652067 | 3_4:-46185532 | Msa0503200:CDS |
| AGAAGATTCTGAGTATAGTG+AGG | 0.652619 | 3_4:-46185385 | Msa0503200:CDS |
| AACAAGCATAACCATAACCA+TGG | 0.658373 | 3_4:+46184679 | None:intergenic |
| GCAAAAGCAGAAGCAAAGGG+AGG | 0.667232 | 3_4:-46184802 | Msa0503200:CDS |
| ACTACACGTAAGTCTTGCCA+AGG | 0.669722 | 3_4:+46184648 | None:intergenic |
| TGAGTATAGTGAGGAAGACG+AGG | 0.671624 | 3_4:-46185376 | Msa0503200:CDS |
| CATGAAACAAGATTCATCTG+TGG | 0.677002 | 3_4:-46185457 | Msa0503200:CDS |
| ATACCGCCAGCACAACGTGG+TGG | 0.689012 | 3_4:+46185102 | None:intergenic |
| ACATCATCGCTTAAGTCGAG+GGG | 0.690101 | 3_4:+46185075 | None:intergenic |
| TTCAAAGCAGCATTGCAGAG+GGG | 0.703047 | 3_4:+46185036 | None:intergenic |
| ACAATACCGCCAGCACAACG+TGG | 0.758364 | 3_4:+46185099 | None:intergenic |
| AAGCATAACCATAACCATGG+CGG | 0.774143 | 3_4:+46184682 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCTTTAAAAGTAATGTAATA+TGG | + | chr3_4:46185260-46185279 | None:intergenic | 20.0% |
| !!! | GCTTTAAAAGTAATGTAATA+TGG | + | chr3_4:46185260-46185279 | None:intergenic | 20.0% |
| !!! | CACTTAATTTTGATTGATTC+TGG | - | chr3_4:46184920-46184939 | Msa0503200:intron | 25.0% |
| ! | ACTTTATCAAACACAAAAGT+TGG | + | chr3_4:46185191-46185210 | None:intergenic | 25.0% |
| ! | CATTAGTGACATAAATAACA+TGG | + | chr3_4:46185501-46185520 | None:intergenic | 25.0% |
| !! | CACTAATGTTTCTGTATAAT+TGG | - | chr3_4:46185513-46185532 | Msa0503200:CDS | 25.0% |
| ! | AGAAAGAAATGAAACTCTAA+AGG | + | chr3_4:46185584-46185603 | None:intergenic | 25.0% |
| !!! | CACTTAATTTTGATTGATTC+TGG | - | chr3_4:46184920-46184939 | Msa0503200:intron | 25.0% |
| ! | ACTTTATCAAACACAAAAGT+TGG | + | chr3_4:46185191-46185210 | None:intergenic | 25.0% |
| ! | CATTAGTGACATAAATAACA+TGG | + | chr3_4:46185501-46185520 | None:intergenic | 25.0% |
| !! | CACTAATGTTTCTGTATAAT+TGG | - | chr3_4:46185513-46185532 | Msa0503200:CDS | 25.0% |
| ! | AGAAAGAAATGAAACTCTAA+AGG | + | chr3_4:46185584-46185603 | None:intergenic | 25.0% |
| !!! | GATTTCGACATTTTGAAACA+CGG | + | chr3_4:46184510-46184529 | None:intergenic | 30.0% |
| GTGTTTCAAAATGTCGAAAT+CGG | - | chr3_4:46184509-46184528 | Msa0503200:three_prime_UTR | 30.0% | |
| TGGTTCTTTGTATACGAATA+AGG | - | chr3_4:46184782-46184801 | Msa0503200:CDS | 30.0% | |
| CAATCAAACGAATATTAAGC+AGG | - | chr3_4:46185073-46185092 | Msa0503200:CDS | 30.0% | |
| AAAGTAATGTAATATGGCCT+AGG | + | chr3_4:46185254-46185273 | None:intergenic | 30.0% | |
| !!! | GATTTCGACATTTTGAAACA+CGG | + | chr3_4:46184510-46184529 | None:intergenic | 30.0% |
| GTGTTTCAAAATGTCGAAAT+CGG | - | chr3_4:46184509-46184528 | Msa0503200:three_prime_UTR | 30.0% | |
| TGGTTCTTTGTATACGAATA+AGG | - | chr3_4:46184782-46184801 | Msa0503200:CDS | 30.0% | |
| CAATCAAACGAATATTAAGC+AGG | - | chr3_4:46185073-46185092 | Msa0503200:CDS | 30.0% | |
| AAAGTAATGTAATATGGCCT+AGG | + | chr3_4:46185254-46185273 | None:intergenic | 30.0% | |
| !!! | ATTTTGAAACACGGAAGGAA+TGG | + | chr3_4:46184501-46184520 | None:intergenic | 35.0% |
| ACACGATGAAGATTCATATG+AGG | - | chr3_4:46184578-46184597 | Msa0503200:three_prime_UTR | 35.0% | |
| TGAAGATTCATATGAGGATG+AGG | - | chr3_4:46184584-46184603 | Msa0503200:three_prime_UTR | 35.0% | |
| CATGAAACAAGATTCATCTG+TGG | - | chr3_4:46184623-46184642 | Msa0503200:three_prime_UTR | 35.0% | |
| TCACTATACTCAGAATCTTC+TGG | + | chr3_4:46184696-46184715 | None:intergenic | 35.0% | |
| AGAAGATTCTGAGTATAGTG+AGG | - | chr3_4:46184695-46184714 | Msa0503200:exon | 35.0% | |
| ! | ACAATGACAGCTTTCCATTT+TGG | - | chr3_4:46184745-46184764 | Msa0503200:CDS | 35.0% |
| CTTTGTATACGAATAAGGCT+TGG | - | chr3_4:46184787-46184806 | Msa0503200:CDS | 35.0% | |
| CAAACGAATATTAAGCAGGT+TGG | - | chr3_4:46185077-46185096 | Msa0503200:CDS | 35.0% | |
| CTACTTCTTTATATGCTCCT+AGG | - | chr3_4:46185234-46185253 | Msa0503200:intron | 35.0% | |
| TAAAGCAAAAGCAGAAGCAA+AGG | - | chr3_4:46185274-46185293 | Msa0503200:CDS | 35.0% | |
| AAAGCAAAAGCAGAAGCAAA+GGG | - | chr3_4:46185275-46185294 | Msa0503200:CDS | 35.0% | |
| ATGAAACACTCTTTGACAAC+AGG | + | chr3_4:46185359-46185378 | None:intergenic | 35.0% | |
| AACAAGCATAACCATAACCA+TGG | + | chr3_4:46185404-46185423 | None:intergenic | 35.0% | |
| ! | GGTTATGGTTATGCTTGTTT+TGG | - | chr3_4:46185405-46185424 | Msa0503200:CDS | 35.0% |
| !!! | ATTTTGAAACACGGAAGGAA+TGG | + | chr3_4:46184501-46184520 | None:intergenic | 35.0% |
| ACACGATGAAGATTCATATG+AGG | - | chr3_4:46184578-46184597 | Msa0503200:three_prime_UTR | 35.0% | |
| TGAAGATTCATATGAGGATG+AGG | - | chr3_4:46184584-46184603 | Msa0503200:three_prime_UTR | 35.0% | |
| CATGAAACAAGATTCATCTG+TGG | - | chr3_4:46184623-46184642 | Msa0503200:three_prime_UTR | 35.0% | |
| TCACTATACTCAGAATCTTC+TGG | + | chr3_4:46184696-46184715 | None:intergenic | 35.0% | |
| AGAAGATTCTGAGTATAGTG+AGG | - | chr3_4:46184695-46184714 | Msa0503200:exon | 35.0% | |
| ! | ACAATGACAGCTTTCCATTT+TGG | - | chr3_4:46184745-46184764 | Msa0503200:CDS | 35.0% |
| CTTTGTATACGAATAAGGCT+TGG | - | chr3_4:46184787-46184806 | Msa0503200:CDS | 35.0% | |
| CAAACGAATATTAAGCAGGT+TGG | - | chr3_4:46185077-46185096 | Msa0503200:CDS | 35.0% | |
| CTACTTCTTTATATGCTCCT+AGG | - | chr3_4:46185234-46185253 | Msa0503200:intron | 35.0% | |
| TAAAGCAAAAGCAGAAGCAA+AGG | - | chr3_4:46185274-46185293 | Msa0503200:CDS | 35.0% | |
| AAAGCAAAAGCAGAAGCAAA+GGG | - | chr3_4:46185275-46185294 | Msa0503200:CDS | 35.0% | |
| ATGAAACACTCTTTGACAAC+AGG | + | chr3_4:46185359-46185378 | None:intergenic | 35.0% | |
| AACAAGCATAACCATAACCA+TGG | + | chr3_4:46185404-46185423 | None:intergenic | 35.0% | |
| ! | GGTTATGGTTATGCTTGTTT+TGG | - | chr3_4:46185405-46185424 | Msa0503200:CDS | 35.0% |
| !!! | TCGACATTTTGAAACACGGA+AGG | + | chr3_4:46184506-46184525 | None:intergenic | 40.0% |
| CAAAATGTCGAAATCGGAAC+AGG | - | chr3_4:46184515-46184534 | Msa0503200:three_prime_UTR | 40.0% | |
| AACAGGAACCGAAATCGAAA+CGG | - | chr3_4:46184532-46184551 | Msa0503200:three_prime_UTR | 40.0% | |
| GATTTCAGCCGTTTCGATTT+CGG | + | chr3_4:46184543-46184562 | None:intergenic | 40.0% | |
| GAAATCGAAACGGCTGAAAT+CGG | - | chr3_4:46184542-46184561 | Msa0503200:three_prime_UTR | 40.0% | |
| AAATCGAAACGGCTGAAATC+GGG | - | chr3_4:46184543-46184562 | Msa0503200:three_prime_UTR | 40.0% | |
| AGATTCATATGAGGATGAGG+AGG | - | chr3_4:46184587-46184606 | Msa0503200:three_prime_UTR | 40.0% | |
| GAAACAAGATTCATCTGTGG+AGG | - | chr3_4:46184626-46184645 | Msa0503200:three_prime_UTR | 40.0% | |
| TACTCAGAATCTTCTGGATC+CGG | + | chr3_4:46184690-46184709 | None:intergenic | 40.0% | |
| TCACGACGCTTATACCAAAA+TGG | + | chr3_4:46184762-46184781 | None:intergenic | 40.0% | |
| !! | TTTTGGTATAAGCGTCGTGA+TGG | - | chr3_4:46184762-46184781 | Msa0503200:CDS | 40.0% |
| TGTATACGAATAAGGCTTGG+AGG | - | chr3_4:46184790-46184809 | Msa0503200:CDS | 40.0% | |
| GTATACGAATAAGGCTTGGA+GGG | - | chr3_4:46184791-46184810 | Msa0503200:CDS | 40.0% | |
| GATTCTGGACAATACAAAGC+AGG | - | chr3_4:46184935-46184954 | Msa0503200:intron | 40.0% | |
| TAAAGAAGTAGCACCAGGAT+GGG | + | chr3_4:46185225-46185244 | None:intergenic | 40.0% | |
| ATAAAGAAGTAGCACCAGGA+TGG | + | chr3_4:46185226-46185245 | None:intergenic | 40.0% | |
| GCATATAAAGAAGTAGCACC+AGG | + | chr3_4:46185230-46185249 | None:intergenic | 40.0% | |
| AAATCTAATACACACCGCCA+TGG | - | chr3_4:46185384-46185403 | Msa0503200:CDS | 40.0% | |
| AAGCATAACCATAACCATGG+CGG | + | chr3_4:46185401-46185420 | None:intergenic | 40.0% | |
| !!! | ATGCTTGTTTTGGTTTGCCT+TGG | - | chr3_4:46185415-46185434 | Msa0503200:CDS | 40.0% |
| !!! | TCGACATTTTGAAACACGGA+AGG | + | chr3_4:46184506-46184525 | None:intergenic | 40.0% |
| CAAAATGTCGAAATCGGAAC+AGG | - | chr3_4:46184515-46184534 | Msa0503200:three_prime_UTR | 40.0% | |
| AACAGGAACCGAAATCGAAA+CGG | - | chr3_4:46184532-46184551 | Msa0503200:three_prime_UTR | 40.0% | |
| GATTTCAGCCGTTTCGATTT+CGG | + | chr3_4:46184543-46184562 | None:intergenic | 40.0% | |
| GAAATCGAAACGGCTGAAAT+CGG | - | chr3_4:46184542-46184561 | Msa0503200:three_prime_UTR | 40.0% | |
| AAATCGAAACGGCTGAAATC+GGG | - | chr3_4:46184543-46184562 | Msa0503200:three_prime_UTR | 40.0% | |
| AGATTCATATGAGGATGAGG+AGG | - | chr3_4:46184587-46184606 | Msa0503200:three_prime_UTR | 40.0% | |
| GAAACAAGATTCATCTGTGG+AGG | - | chr3_4:46184626-46184645 | Msa0503200:three_prime_UTR | 40.0% | |
| TACTCAGAATCTTCTGGATC+CGG | + | chr3_4:46184690-46184709 | None:intergenic | 40.0% | |
| TCACGACGCTTATACCAAAA+TGG | + | chr3_4:46184762-46184781 | None:intergenic | 40.0% | |
| !! | TTTTGGTATAAGCGTCGTGA+TGG | - | chr3_4:46184762-46184781 | Msa0503200:CDS | 40.0% |
| TGTATACGAATAAGGCTTGG+AGG | - | chr3_4:46184790-46184809 | Msa0503200:CDS | 40.0% | |
| GTATACGAATAAGGCTTGGA+GGG | - | chr3_4:46184791-46184810 | Msa0503200:CDS | 40.0% | |
| GATTCTGGACAATACAAAGC+AGG | - | chr3_4:46184935-46184954 | Msa0503200:intron | 40.0% | |
| TAAAGAAGTAGCACCAGGAT+GGG | + | chr3_4:46185225-46185244 | None:intergenic | 40.0% | |
| ATAAAGAAGTAGCACCAGGA+TGG | + | chr3_4:46185226-46185245 | None:intergenic | 40.0% | |
| GCATATAAAGAAGTAGCACC+AGG | + | chr3_4:46185230-46185249 | None:intergenic | 40.0% | |
| AAATCTAATACACACCGCCA+TGG | - | chr3_4:46185384-46185403 | Msa0503200:CDS | 40.0% | |
| AAGCATAACCATAACCATGG+CGG | + | chr3_4:46185401-46185420 | None:intergenic | 40.0% | |
| !!! | ATGCTTGTTTTGGTTTGCCT+TGG | - | chr3_4:46185415-46185434 | Msa0503200:CDS | 40.0% |
| ACAAGATTCATCTGTGGAGG+AGG | - | chr3_4:46184629-46184648 | Msa0503200:three_prime_UTR | 45.0% | |
| GAATCTTCTGGATCCGGTTT+CGG | + | chr3_4:46184684-46184703 | None:intergenic | 45.0% | |
| TGAGTATAGTGAGGAAGACG+AGG | - | chr3_4:46184704-46184723 | Msa0503200:exon | 45.0% | |
| CGCTCTAGCAAACTAAGTGT+AGG | - | chr3_4:46184846-46184865 | Msa0503200:CDS | 45.0% | |
| ACATCATCGCTTAAGTCGAG+GGG | + | chr3_4:46185008-46185027 | None:intergenic | 45.0% | |
| CACATCATCGCTTAAGTCGA+GGG | + | chr3_4:46185009-46185028 | None:intergenic | 45.0% | |
| TTCAAAGCAGCATTGCAGAG+GGG | + | chr3_4:46185047-46185066 | None:intergenic | 45.0% | |
| CTTCAAAGCAGCATTGCAGA+GGG | + | chr3_4:46185048-46185067 | None:intergenic | 45.0% | |
| TCTTCAAAGCAGCATTGCAG+AGG | + | chr3_4:46185049-46185068 | None:intergenic | 45.0% | |
| GTCTGGAAAGTTGTTAGAGC+AGG | + | chr3_4:46185308-46185327 | None:intergenic | 45.0% | |
| TACGCTGCAATACATGAGTC+TGG | + | chr3_4:46185325-46185344 | None:intergenic | 45.0% | |
| AATACACACCGCCATGGTTA+TGG | - | chr3_4:46185390-46185409 | Msa0503200:CDS | 45.0% | |
| ACTACACGTAAGTCTTGCCA+AGG | + | chr3_4:46185435-46185454 | None:intergenic | 45.0% | |
| ACAAGATTCATCTGTGGAGG+AGG | - | chr3_4:46184629-46184648 | Msa0503200:three_prime_UTR | 45.0% | |
| GAATCTTCTGGATCCGGTTT+CGG | + | chr3_4:46184684-46184703 | None:intergenic | 45.0% | |
| TGAGTATAGTGAGGAAGACG+AGG | - | chr3_4:46184704-46184723 | Msa0503200:exon | 45.0% | |
| CGCTCTAGCAAACTAAGTGT+AGG | - | chr3_4:46184846-46184865 | Msa0503200:CDS | 45.0% | |
| ACATCATCGCTTAAGTCGAG+GGG | + | chr3_4:46185008-46185027 | None:intergenic | 45.0% | |
| CACATCATCGCTTAAGTCGA+GGG | + | chr3_4:46185009-46185028 | None:intergenic | 45.0% | |
| TTCAAAGCAGCATTGCAGAG+GGG | + | chr3_4:46185047-46185066 | None:intergenic | 45.0% | |
| CTTCAAAGCAGCATTGCAGA+GGG | + | chr3_4:46185048-46185067 | None:intergenic | 45.0% | |
| TCTTCAAAGCAGCATTGCAG+AGG | + | chr3_4:46185049-46185068 | None:intergenic | 45.0% | |
| GTCTGGAAAGTTGTTAGAGC+AGG | + | chr3_4:46185308-46185327 | None:intergenic | 45.0% | |
| TACGCTGCAATACATGAGTC+TGG | + | chr3_4:46185325-46185344 | None:intergenic | 45.0% | |
| AATACACACCGCCATGGTTA+TGG | - | chr3_4:46185390-46185409 | Msa0503200:CDS | 45.0% | |
| ACTACACGTAAGTCTTGCCA+AGG | + | chr3_4:46185435-46185454 | None:intergenic | 45.0% | |
| !! | TTACTTATTTATTATTAATT+AGG | - | chr3_4:46185163-46185182 | Msa0503200:intron | 5.0% |
| !! | TACTTATTTATTATTAATTA+GGG | - | chr3_4:46185164-46185183 | Msa0503200:intron | 5.0% |
| !! | AATTAATTAAATAAATATGA+TGG | - | chr3_4:46185456-46185475 | Msa0503200:CDS | 5.0% |
| !! | ATTAATTAAATAAATATGAT+GGG | - | chr3_4:46185457-46185476 | Msa0503200:CDS | 5.0% |
| !! | TTACTTATTTATTATTAATT+AGG | - | chr3_4:46185163-46185182 | Msa0503200:intron | 5.0% |
| !! | TACTTATTTATTATTAATTA+GGG | - | chr3_4:46185164-46185183 | Msa0503200:intron | 5.0% |
| !! | AATTAATTAAATAAATATGA+TGG | - | chr3_4:46185456-46185475 | Msa0503200:CDS | 5.0% |
| !! | ATTAATTAAATAAATATGAT+GGG | - | chr3_4:46185457-46185476 | Msa0503200:CDS | 5.0% |
| GAAACGGCTGAAATCGGGAT+CGG | - | chr3_4:46184548-46184567 | Msa0503200:three_prime_UTR | 50.0% | |
| TGAGGATGAGGAGGATAAGC+AGG | - | chr3_4:46184596-46184615 | Msa0503200:three_prime_UTR | 50.0% | |
| AGATTCATCTGTGGAGGAGG+AGG | - | chr3_4:46184632-46184651 | Msa0503200:three_prime_UTR | 50.0% | |
| GGAGGAGAAACGGCTGAAAT+CGG | - | chr3_4:46184656-46184675 | Msa0503200:three_prime_UTR | 50.0% | |
| GCTGAAATCGGAACCGAAAC+CGG | - | chr3_4:46184668-46184687 | Msa0503200:three_prime_UTR | 50.0% | |
| GCACATCATCGCTTAAGTCG+AGG | + | chr3_4:46185010-46185029 | None:intergenic | 50.0% | |
| TGCAGAGGGGTTTGAGAGTA+CGG | + | chr3_4:46185034-46185053 | None:intergenic | 50.0% | |
| GTTGTCAAGTGTACCCATCC+TGG | - | chr3_4:46185209-46185228 | Msa0503200:intron | 50.0% | |
| GCAAAAGCAGAAGCAAAGGG+AGG | - | chr3_4:46185278-46185297 | Msa0503200:CDS | 50.0% | |
| GAAACGGCTGAAATCGGGAT+CGG | - | chr3_4:46184548-46184567 | Msa0503200:three_prime_UTR | 50.0% | |
| TGAGGATGAGGAGGATAAGC+AGG | - | chr3_4:46184596-46184615 | Msa0503200:three_prime_UTR | 50.0% | |
| AGATTCATCTGTGGAGGAGG+AGG | - | chr3_4:46184632-46184651 | Msa0503200:three_prime_UTR | 50.0% | |
| GGAGGAGAAACGGCTGAAAT+CGG | - | chr3_4:46184656-46184675 | Msa0503200:three_prime_UTR | 50.0% | |
| GCTGAAATCGGAACCGAAAC+CGG | - | chr3_4:46184668-46184687 | Msa0503200:three_prime_UTR | 50.0% | |
| GCACATCATCGCTTAAGTCG+AGG | + | chr3_4:46185010-46185029 | None:intergenic | 50.0% | |
| TGCAGAGGGGTTTGAGAGTA+CGG | + | chr3_4:46185034-46185053 | None:intergenic | 50.0% | |
| GTTGTCAAGTGTACCCATCC+TGG | - | chr3_4:46185209-46185228 | Msa0503200:intron | 50.0% | |
| GCAAAAGCAGAAGCAAAGGG+AGG | - | chr3_4:46185278-46185297 | Msa0503200:CDS | 50.0% | |
| TTCATCTGTGGAGGAGGAGG+AGG | - | chr3_4:46184635-46184654 | Msa0503200:three_prime_UTR | 55.0% | |
| AGGAGGAGGAGGAGGAGAAA+CGG | - | chr3_4:46184646-46184665 | Msa0503200:three_prime_UTR | 55.0% | |
| TAAGGCTTGGAGGGATCGTC+AGG | - | chr3_4:46184800-46184819 | Msa0503200:CDS | 55.0% | |
| ACAATACCGCCAGCACAACG+TGG | + | chr3_4:46184984-46185003 | None:intergenic | 55.0% | |
| TTCATCTGTGGAGGAGGAGG+AGG | - | chr3_4:46184635-46184654 | Msa0503200:three_prime_UTR | 55.0% | |
| AGGAGGAGGAGGAGGAGAAA+CGG | - | chr3_4:46184646-46184665 | Msa0503200:three_prime_UTR | 55.0% | |
| TAAGGCTTGGAGGGATCGTC+AGG | - | chr3_4:46184800-46184819 | Msa0503200:CDS | 55.0% | |
| ACAATACCGCCAGCACAACG+TGG | + | chr3_4:46184984-46185003 | None:intergenic | 55.0% | |
| ATCTGTGGAGGAGGAGGAGG+AGG | - | chr3_4:46184638-46184657 | Msa0503200:three_prime_UTR | 60.0% | |
| !! | CAGCACAACGTGGTGGACAG+TGG | + | chr3_4:46184974-46184993 | None:intergenic | 60.0% |
| CACTGTCCACCACGTTGTGC+TGG | - | chr3_4:46184972-46184991 | Msa0503200:intron | 60.0% | |
| TGTCCACCACGTTGTGCTGG+CGG | - | chr3_4:46184975-46184994 | Msa0503200:intron | 60.0% | |
| ATACCGCCAGCACAACGTGG+TGG | + | chr3_4:46184981-46185000 | None:intergenic | 60.0% | |
| ATCTGTGGAGGAGGAGGAGG+AGG | - | chr3_4:46184638-46184657 | Msa0503200:three_prime_UTR | 60.0% | |
| !! | CAGCACAACGTGGTGGACAG+TGG | + | chr3_4:46184974-46184993 | None:intergenic | 60.0% |
| CACTGTCCACCACGTTGTGC+TGG | - | chr3_4:46184972-46184991 | Msa0503200:intron | 60.0% | |
| TGTCCACCACGTTGTGCTGG+CGG | - | chr3_4:46184975-46184994 | Msa0503200:intron | 60.0% | |
| ATACCGCCAGCACAACGTGG+TGG | + | chr3_4:46184981-46185000 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 46184496 | 46185606 | 46184496 | ID=Msa0503200;Name=Msa0503200 |
| chr3_4 | mRNA | 46184496 | 46185606 | 46184496 | ID=Msa0503200-mRNA-1;Parent=Msa0503200;Name=Msa0503200-mRNA-1;_AED=0.36;_eAED=0.36;_QI=23|1|1|1|1|1|3|215|229 |
| chr3_4 | exon | 46184496 | 46184917 | 46184496 | ID=Msa0503200-mRNA-1:exon:9936;Parent=Msa0503200-mRNA-1 |
| chr3_4 | exon | 46185008 | 46185145 | 46185008 | ID=Msa0503200-mRNA-1:exon:9935;Parent=Msa0503200-mRNA-1 |
| chr3_4 | exon | 46185239 | 46185606 | 46185239 | ID=Msa0503200-mRNA-1:exon:9934;Parent=Msa0503200-mRNA-1 |
| chr3_4 | five_prime_UTR | 46185584 | 46185606 | 46185584 | ID=Msa0503200-mRNA-1:five_prime_utr;Parent=Msa0503200-mRNA-1 |
| chr3_4 | CDS | 46185239 | 46185583 | 46185239 | ID=Msa0503200-mRNA-1:cds;Parent=Msa0503200-mRNA-1 |
| chr3_4 | CDS | 46185008 | 46185145 | 46185008 | ID=Msa0503200-mRNA-1:cds;Parent=Msa0503200-mRNA-1 |
| chr3_4 | CDS | 46184711 | 46184917 | 46184711 | ID=Msa0503200-mRNA-1:cds;Parent=Msa0503200-mRNA-1 |
| chr3_4 | three_prime_UTR | 46184496 | 46184710 | 46184496 | ID=Msa0503200-mRNA-1:three_prime_utr;Parent=Msa0503200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
