Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0006550 | sp|Q94A05|B3GTA_ARATH | 77.457 | 346 | 76 | 2 | 1 | 345 | 1 | 345 | 0.0 | 557 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004860 | Msa0006550 | 0.831195 | 1.916038e-55 | -8.615850e-47 |
Msa0004920 | Msa0006550 | 0.824484 | 7.874612e-54 | -8.615850e-47 |
Msa0006550 | Msa0008410 | 0.808219 | 3.449122e-50 | -8.615850e-47 |
Msa0006550 | Msa0015300 | 0.800584 | 1.345845e-48 | -8.615850e-47 |
Msa0006550 | Msa0018620 | 0.804437 | 2.161478e-49 | -8.615850e-47 |
Msa0006550 | Msa0025730 | 0.812720 | 3.679203e-51 | -8.615850e-47 |
Msa0006550 | Msa0029260 | 0.815939 | 7.148431e-52 | -8.615850e-47 |
Msa0006550 | Msa0032260 | 0.820878 | 5.434313e-53 | -8.615850e-47 |
Msa0006550 | Msa0054750 | 0.802054 | 6.730923e-49 | -8.615850e-47 |
Msa0006550 | Msa0056030 | 0.822650 | 2.115168e-53 | -8.615850e-47 |
Msa0006550 | Msa0057140 | 0.815274 | 1.005339e-51 | -8.615850e-47 |
Msa0006550 | Msa0064350 | 0.813323 | 2.712517e-51 | -8.615850e-47 |
Msa0006550 | Msa0084780 | 0.811751 | 5.984894e-51 | -8.615850e-47 |
Msa0006550 | Msa0084940 | 0.814113 | 1.817904e-51 | -8.615850e-47 |
Msa0006550 | Msa0094920 | 0.810671 | 1.026563e-50 | -8.615850e-47 |
Msa0006550 | Msa0095010 | 0.808267 | 3.368186e-50 | -8.615850e-47 |
Msa0006550 | Msa0115270 | 0.804791 | 1.823433e-49 | -8.615850e-47 |
Msa0006550 | Msa0115390 | 0.804848 | 1.773536e-49 | -8.615850e-47 |
Msa0006550 | Msa0121820 | 0.807636 | 4.589367e-50 | -8.615850e-47 |
Msa0006550 | Msa0127310 | 0.820583 | 6.352929e-53 | -8.615850e-47 |
Msa0006550 | Msa0137990 | 0.801727 | 7.854698e-49 | -8.615850e-47 |
Msa0006550 | Msa0159930 | 0.801441 | 8.990380e-49 | -8.615850e-47 |
Msa0006550 | Msa0169300 | 0.816556 | 5.202717e-52 | -8.615850e-47 |
Msa0006550 | Msa0183900 | 0.810737 | 9.931227e-51 | -8.615850e-47 |
Msa0006550 | Msa0190120 | 0.803605 | 3.218345e-49 | -8.615850e-47 |
Msa0006550 | Msa0191050 | 0.803031 | 4.232246e-49 | -8.615850e-47 |
Msa0006550 | Msa0194480 | 0.822971 | 1.780571e-53 | -8.615850e-47 |
Msa0006550 | Msa0199690 | 0.804350 | 2.253421e-49 | -8.615850e-47 |
Msa0006550 | Msa0206010 | 0.805113 | 1.561483e-49 | -8.615850e-47 |
Msa0006550 | Msa0217680 | 0.816182 | 6.308488e-52 | -8.615850e-47 |
Msa0006550 | Msa0224320 | 0.803431 | 3.498462e-49 | -8.615850e-47 |
Msa0006550 | Msa0233350 | 0.810289 | 1.241072e-50 | -8.615850e-47 |
Msa0006550 | Msa0236270 | 0.808934 | 2.426336e-50 | -8.615850e-47 |
Msa0006550 | Msa0260210 | 0.809649 | 1.704305e-50 | -8.615850e-47 |
Msa0006550 | Msa0264930 | 0.808336 | 3.256426e-50 | -8.615850e-47 |
Msa0006550 | Msa0271890 | 0.806609 | 7.569643e-50 | -8.615850e-47 |
Msa0006550 | Msa0273900 | 0.805958 | 1.038153e-49 | -8.615850e-47 |
Msa0006550 | Msa0279220 | 0.805021 | 1.632167e-49 | -8.615850e-47 |
Msa0006550 | Msa0284820 | 0.809032 | 2.311657e-50 | -8.615850e-47 |
Msa0006550 | Msa0287410 | 0.806932 | 6.467936e-50 | -8.615850e-47 |
Msa0006550 | Msa0291500 | 0.834341 | 3.169655e-56 | -8.615850e-47 |
Msa0006550 | Msa0302980 | 0.800850 | 1.187743e-48 | -8.615850e-47 |
Msa0006550 | Msa0304290 | 0.810254 | 1.263000e-50 | -8.615850e-47 |
Msa0006550 | Msa0304330 | 0.813871 | 2.055095e-51 | -8.615850e-47 |
Msa0006550 | Msa0305890 | 0.801338 | 9.437427e-49 | -8.615850e-47 |
Msa0006550 | Msa0310860 | 0.800906 | 1.156644e-48 | -8.615850e-47 |
Msa0006550 | Msa0311700 | 0.803595 | 3.233870e-49 | -8.615850e-47 |
Msa0006550 | Msa0326110 | 0.806730 | 7.137472e-50 | -8.615850e-47 |
Msa0006550 | Msa0329350 | 0.821118 | 4.784651e-53 | -8.615850e-47 |
Msa0006550 | Msa0337650 | 0.802103 | 6.575731e-49 | -8.615850e-47 |
Msa0006550 | Msa0340810 | 0.801557 | 8.510467e-49 | -8.615850e-47 |
Msa0006550 | Msa0342100 | 0.800648 | 1.306153e-48 | -8.615850e-47 |
Msa0006550 | Msa0347360 | 0.803216 | 3.874859e-49 | -8.615850e-47 |
Msa0006550 | Msa0366890 | 0.806408 | 8.348088e-50 | -8.615850e-47 |
Msa0006550 | Msa0369050 | 0.807765 | 4.307193e-50 | -8.615850e-47 |
Msa0006550 | Msa0372660 | 0.802490 | 5.474556e-49 | -8.615850e-47 |
Msa0006550 | Msa0372670 | 0.803328 | 3.673145e-49 | -8.615850e-47 |
Msa0006550 | Msa0376690 | 0.811231 | 7.762704e-51 | -8.615850e-47 |
Msa0006550 | Msa0394340 | 0.808840 | 2.541899e-50 | -8.615850e-47 |
Msa0006550 | Msa0399340 | 0.805366 | 1.382305e-49 | -8.615850e-47 |
Msa0006550 | Msa0409270 | 0.811576 | 6.532483e-51 | -8.615850e-47 |
Msa0006550 | Msa0416300 | 0.806953 | 6.404167e-50 | -8.615850e-47 |
Msa0006550 | Msa0419520 | 0.801614 | 8.285755e-49 | -8.615850e-47 |
Msa0006550 | Msa0433360 | 0.810501 | 1.117189e-50 | -8.615850e-47 |
Msa0006550 | Msa0433640 | 0.828195 | 1.028769e-54 | -8.615850e-47 |
Msa0006550 | Msa0442200 | 0.806751 | 7.063524e-50 | -8.615850e-47 |
Msa0006550 | Msa0453690 | 0.819156 | 1.346667e-52 | -8.615850e-47 |
Msa0006550 | Msa0458060 | 0.816432 | 5.548170e-52 | -8.615850e-47 |
Msa0006550 | Msa0475580 | 0.801177 | 1.018235e-48 | -8.615850e-47 |
Msa0006550 | Msa0481530 | 0.809783 | 1.595318e-50 | -8.615850e-47 |
Msa0006550 | Msa0484780 | 0.812954 | 3.268285e-51 | -8.615850e-47 |
Msa0006550 | Msa0485120 | 0.808584 | 2.882320e-50 | -8.615850e-47 |
Msa0006550 | Msa0489610 | 0.812954 | 3.268439e-51 | -8.615850e-47 |
Msa0006550 | Msa0508590 | 0.806003 | 1.015606e-49 | -8.615850e-47 |
Msa0006550 | Msa0508630 | 0.807136 | 5.858377e-50 | -8.615850e-47 |
Msa0006550 | Msa0521540 | 0.821025 | 5.027032e-53 | -8.615850e-47 |
Msa0006550 | Msa0534900 | 0.814774 | 1.297939e-51 | -8.615850e-47 |
Msa0006550 | Msa0562440 | 0.816313 | 5.896436e-52 | -8.615850e-47 |
Msa0006550 | Msa0568820 | 0.808316 | 3.288159e-50 | -8.615850e-47 |
Msa0006550 | Msa0575470 | 0.802735 | 4.872060e-49 | -8.615850e-47 |
Msa0006550 | Msa0585560 | 0.800442 | 1.438798e-48 | -8.615850e-47 |
Msa0006550 | Msa0585900 | 0.802647 | 5.080483e-49 | -8.615850e-47 |
Msa0006550 | Msa0588240 | 0.808563 | 2.913245e-50 | -8.615850e-47 |
Msa0006550 | Msa0591540 | 0.803598 | 3.228910e-49 | -8.615850e-47 |
Msa0006550 | Msa0608710 | 0.812987 | 3.214865e-51 | -8.615850e-47 |
Msa0006550 | Msa0619070 | 0.806349 | 8.589910e-50 | -8.615850e-47 |
Msa0006550 | Msa0628740 | 0.802277 | 6.056028e-49 | -8.615850e-47 |
Msa0006550 | Msa0631350 | 0.809035 | 2.309062e-50 | -8.615850e-47 |
Msa0006550 | Msa0638070 | 0.817541 | 3.126149e-52 | -8.615850e-47 |
Msa0006550 | Msa0649490 | 0.800193 | 1.616728e-48 | -8.615850e-47 |
Msa0006550 | Msa0663390 | 0.811501 | 6.784229e-51 | -8.615850e-47 |
Msa0006550 | Msa0663900 | 0.813932 | 1.992453e-51 | -8.615850e-47 |
Msa0006550 | Msa0666140 | 0.802031 | 6.803202e-49 | -8.615850e-47 |
Msa0006550 | Msa0669760 | 0.812351 | 4.429638e-51 | -8.615850e-47 |
Msa0006550 | Msa0673010 | -0.808115 | 3.628344e-50 | -8.615850e-47 |
Msa0006550 | Msa0680240 | 0.802900 | 4.504455e-49 | -8.615850e-47 |
Msa0006550 | Msa0687630 | 0.801211 | 1.002053e-48 | -8.615850e-47 |
Msa0006550 | Msa0691900 | 0.811294 | 7.522294e-51 | -8.615850e-47 |
Msa0006550 | Msa0692840 | 0.802827 | 4.663702e-49 | -8.615850e-47 |
Msa0006550 | Msa0692940 | 0.805097 | 1.573849e-49 | -8.615850e-47 |
Msa0006550 | Msa0694840 | 0.811638 | 6.333755e-51 | -8.615850e-47 |
Msa0006550 | Msa0709500 | 0.802827 | 4.663682e-49 | -8.615850e-47 |
Msa0006550 | Msa0724830 | 0.810505 | 1.115138e-50 | -8.615850e-47 |
Msa0006550 | Msa0726830 | 0.800473 | 1.417953e-48 | -8.615850e-47 |
Msa0006550 | Msa0750430 | 0.814186 | 1.751811e-51 | -8.615850e-47 |
Msa0006550 | Msa0765380 | 0.806447 | 8.190509e-50 | -8.615850e-47 |
Msa0006550 | Msa0784380 | 0.825616 | 4.254010e-54 | -8.615850e-47 |
Msa0006550 | Msa0790850 | 0.803918 | 2.771908e-49 | -8.615850e-47 |
Msa0006550 | Msa0808270 | 0.805786 | 1.128401e-49 | -8.615850e-47 |
Msa0006550 | Msa0832150 | 0.807495 | 4.915235e-50 | -8.615850e-47 |
Msa0006550 | Msa0876200 | 0.817607 | 3.021192e-52 | -8.615850e-47 |
Msa0006550 | Msa0876580 | 0.809950 | 1.468536e-50 | -8.615850e-47 |
Msa0006550 | Msa0905380 | 0.805376 | 1.375200e-49 | -8.615850e-47 |
Msa0006550 | Msa0909010 | 0.809052 | 2.288803e-50 | -8.615850e-47 |
Msa0006550 | Msa0933230 | 0.816278 | 6.005187e-52 | -8.615850e-47 |
Msa0006550 | Msa0933310 | 0.803540 | 3.320593e-49 | -8.615850e-47 |
Msa0006550 | Msa0971020 | 0.806559 | 7.758172e-50 | -8.615850e-47 |
Msa0006550 | Msa0974810 | 0.815821 | 7.595528e-52 | -8.615850e-47 |
Msa0006550 | Msa0997430 | 0.802210 | 6.251026e-49 | -8.615850e-47 |
Msa0006550 | Msa1013040 | 0.810626 | 1.049991e-50 | -8.615850e-47 |
Msa0006550 | Msa1021540 | 0.826031 | 3.389850e-54 | -8.615850e-47 |
Msa0006550 | Msa1046020 | 0.809686 | 1.673777e-50 | -8.615850e-47 |
Msa0006550 | Msa1046060 | 0.809258 | 2.068338e-50 | -8.615850e-47 |
Msa0006550 | Msa1082500 | 0.823530 | 1.318337e-53 | -8.615850e-47 |
Msa0006550 | Msa1089840 | 0.814694 | 1.352486e-51 | -8.615850e-47 |
Msa0006550 | Msa1091100 | 0.811114 | 8.230231e-51 | -8.615850e-47 |
Msa0006550 | Msa1125470 | 0.808510 | 2.989067e-50 | -8.615850e-47 |
Msa0006550 | Msa1127890 | 0.802885 | 4.535831e-49 | -8.615850e-47 |
Msa0006550 | Msa1134090 | 0.809283 | 2.042776e-50 | -8.615850e-47 |
Msa0006550 | Msa1150710 | 0.802249 | 6.136433e-49 | -8.615850e-47 |
Msa0006550 | Msa1157740 | 0.804837 | 1.783017e-49 | -8.615850e-47 |
Msa0006550 | Msa1164590 | 0.802581 | 5.242827e-49 | -8.615850e-47 |
Msa0006550 | Msa1171870 | 0.809112 | 2.222588e-50 | -8.615850e-47 |
Msa0006550 | Msa1193290 | 0.809590 | 1.755558e-50 | -8.615850e-47 |
Msa0006550 | Msa1199560 | 0.806792 | 6.926375e-50 | -8.615850e-47 |
Msa0006550 | Msa1201560 | 0.820541 | 6.497064e-53 | -8.615850e-47 |
Msa0006550 | Msa1204250 | 0.803349 | 3.636701e-49 | -8.615850e-47 |
Msa0006550 | Msa1211150 | -0.802822 | 4.674888e-49 | -8.615850e-47 |
Msa0006550 | Msa1217830 | 0.818351 | 2.051097e-52 | -8.615850e-47 |
Msa0006550 | Msa1218600 | 0.807037 | 6.145707e-50 | -8.615850e-47 |
Msa0006550 | Msa1233890 | 0.801269 | 9.750554e-49 | -8.615850e-47 |
Msa0006550 | Msa1254710 | 0.811800 | 5.840883e-51 | -8.615850e-47 |
Msa0006550 | Msa1254730 | 0.800642 | 1.309575e-48 | -8.615850e-47 |
Msa0006550 | Msa1255040 | -0.812345 | 4.443211e-51 | -8.615850e-47 |
Msa0006550 | Msa1269300 | 0.817325 | 3.497276e-52 | -8.615850e-47 |
Msa0006550 | Msa1290190 | 0.810987 | 8.768554e-51 | -8.615850e-47 |
Msa0006550 | Msa1305340 | 0.801573 | 8.447841e-49 | -8.615850e-47 |
Msa0006550 | Msa1306430 | 0.811928 | 5.477504e-51 | -8.615850e-47 |
Msa0006550 | Msa1331350 | 0.804153 | 2.476305e-49 | -8.615850e-47 |
Msa0006550 | Msa1333110 | 0.801835 | 7.466248e-49 | -8.615850e-47 |
Msa0006550 | Msa1341070 | 0.800191 | 1.618159e-48 | -8.615850e-47 |
Msa0006550 | Msa1343070 | 0.801974 | 6.989625e-49 | -8.615850e-47 |
Msa0006550 | Msa1345040 | 0.803323 | 3.682202e-49 | -8.615850e-47 |
Msa0006550 | Msa1353980 | 0.808967 | 2.387499e-50 | -8.615850e-47 |
Msa0006550 | Msa1370070 | -0.802866 | 4.577907e-49 | -8.615850e-47 |
Msa0006550 | Msa1372580 | 0.805559 | 1.259274e-49 | -8.615850e-47 |
Msa0006550 | Msa1385670 | 0.811167 | 8.018122e-51 | -8.615850e-47 |
Msa0006550 | Msa1388860 | 0.808119 | 3.621628e-50 | -8.615850e-47 |
Msa0006550 | Msa1411020 | 0.802629 | 5.123212e-49 | -8.615850e-47 |
Msa0006550 | Msa1424450 | 0.800324 | 1.520551e-48 | -8.615850e-47 |
Msa0006550 | Msa1435370 | 0.821254 | 4.452833e-53 | -8.615850e-47 |
Msa0006550 | Msa1439320 | 0.802437 | 5.613964e-49 | -8.615850e-47 |
Msa0006550 | Msa1440000 | 0.830572 | 2.723232e-55 | -8.615850e-47 |
Msa0006550 | Msa1440910 | 0.820998 | 5.099722e-53 | -8.615850e-47 |
Msa0006550 | Msa1444740 | 0.806141 | 9.502503e-50 | -8.615850e-47 |
Msa0006550 | Msa1451550 | 0.814709 | 1.342009e-51 | -8.615850e-47 |
Msa0006550 | Msa1461280 | 0.810644 | 1.040291e-50 | -8.615850e-47 |
Msa0006550 | Msa1462290 | 0.804374 | 2.227970e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0006550 | MtrunA17_Chr1g0149521 | 99.422 | 346 | 1 | 1 | 1 | 345 | 1 | 346 | 0.0 | 699 |
Msa0006550 | MtrunA17_Chr3g0126221 | 47.040 | 321 | 167 | 3 | 26 | 343 | 20 | 340 | 1.27e-111 | 328 |
Msa0006550 | MtrunA17_Chr5g0396961 | 46.250 | 320 | 169 | 2 | 27 | 343 | 21 | 340 | 2.50e-107 | 317 |
Msa0006550 | MtrunA17_Chr3g0115251 | 38.602 | 329 | 179 | 5 | 29 | 335 | 16 | 343 | 3.60e-73 | 231 |
Msa0006550 | MtrunA17_Chr4g0024631 | 43.511 | 262 | 137 | 5 | 84 | 335 | 96 | 356 | 1.44e-67 | 218 |
Msa0006550 | MtrunA17_Chr2g0322591 | 44.487 | 263 | 135 | 5 | 83 | 335 | 91 | 352 | 2.83e-64 | 209 |
Msa0006550 | MtrunA17_Chr4g0004991 | 43.348 | 233 | 128 | 4 | 106 | 335 | 12 | 243 | 1.20e-63 | 204 |
Msa0006550 | MtrunA17_Chr4g0017871 | 43.878 | 196 | 107 | 3 | 142 | 335 | 4 | 198 | 2.51e-55 | 181 |
Msa0006550 | MtrunA17_Chr8g0360581 | 28.280 | 343 | 201 | 10 | 4 | 341 | 2 | 304 | 1.21e-37 | 137 |
Msa0006550 | MtrunA17_Chr2g0316241 | 35.043 | 234 | 137 | 8 | 112 | 337 | 71 | 297 | 1.88e-35 | 131 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0006550 | AT4G32120.1 | 77.457 | 346 | 76 | 2 | 1 | 345 | 1 | 345 | 0.0 | 557 |
Msa0006550 | AT2G25300.1 | 74.352 | 347 | 86 | 2 | 1 | 345 | 1 | 346 | 0.0 | 535 |
Msa0006550 | AT2G25300.2 | 78.067 | 269 | 58 | 1 | 77 | 345 | 1 | 268 | 3.33e-161 | 451 |
Msa0006550 | AT5G53340.1 | 44.062 | 320 | 176 | 3 | 27 | 343 | 17 | 336 | 3.96e-99 | 296 |
Msa0006550 | AT5G53340.2 | 44.062 | 320 | 175 | 4 | 27 | 343 | 17 | 335 | 4.10e-97 | 291 |
Msa0006550 | AT1G05170.1 | 37.989 | 358 | 188 | 7 | 9 | 335 | 2 | 356 | 5.40e-75 | 236 |
Msa0006550 | AT1G05170.2 | 37.989 | 358 | 188 | 7 | 9 | 335 | 2 | 356 | 4.74e-74 | 234 |
Msa0006550 | AT1G32930.1 | 47.059 | 221 | 114 | 3 | 117 | 335 | 129 | 348 | 1.88e-69 | 223 |
Msa0006550 | AT1G77810.2 | 46.847 | 222 | 115 | 3 | 116 | 335 | 113 | 333 | 6.95e-69 | 221 |
Msa0006550 | AT1G77810.1 | 46.847 | 222 | 115 | 3 | 116 | 335 | 116 | 336 | 1.06e-68 | 220 |
Msa0006550 | AT2G32430.1 | 38.571 | 350 | 180 | 8 | 18 | 335 | 12 | 358 | 2.03e-67 | 218 |
Msa0006550 | AT1G33430.1 | 42.692 | 260 | 142 | 4 | 82 | 335 | 84 | 342 | 1.73e-65 | 212 |
Msa0006550 | AT1G11730.1 | 42.188 | 256 | 143 | 5 | 84 | 335 | 79 | 333 | 7.66e-65 | 210 |
Msa0006550 | AT1G33430.2 | 41.418 | 268 | 142 | 5 | 82 | 335 | 84 | 350 | 1.77e-62 | 204 |
Msa0006550 | AT4G26940.1 | 39.403 | 335 | 172 | 11 | 28 | 335 | 27 | 357 | 2.65e-62 | 204 |
Msa0006550 | AT1G22015.1 | 42.920 | 226 | 126 | 3 | 112 | 335 | 120 | 344 | 1.75e-57 | 191 |
Msa0006550 | AT1G33430.3 | 43.612 | 227 | 121 | 4 | 80 | 300 | 82 | 307 | 1.10e-54 | 181 |
Msa0006550 | AT1G53290.1 | 33.198 | 247 | 148 | 8 | 100 | 341 | 73 | 307 | 6.25e-36 | 133 |
Msa0006550 | AT2G26100.2 | 36.404 | 228 | 134 | 7 | 116 | 337 | 108 | 330 | 1.07e-35 | 133 |
Msa0006550 | AT2G26100.1 | 36.404 | 228 | 134 | 7 | 116 | 337 | 108 | 330 | 1.10e-35 | 133 |
Msa0006550 | AT3G14960.1 | 33.333 | 228 | 141 | 7 | 116 | 337 | 82 | 304 | 3.76e-35 | 131 |
Msa0006550 | AT4G26940.2 | 37.023 | 262 | 135 | 10 | 28 | 263 | 27 | 284 | 3.58e-33 | 125 |
Find 98 sgRNAs with CRISPR-Local
Find 396 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGACTAAAATATGAAAATTT+AGG | 0.118819 | 1_1:+9476263 | None:intergenic |
TGTTATACTTTCGAAGAATT+TGG | 0.175766 | 1_1:-9477735 | Msa0006550:CDS |
CGTAGGCTTCTTGCTGTTAT+TGG | 0.197350 | 1_1:-9481711 | Msa0006550:CDS |
GAACCTGATTGGTGGAAATT+TGG | 0.211524 | 1_1:-9478879 | Msa0006550:CDS |
AACCTGATTGGTGGAAATTT+GGG | 0.317577 | 1_1:-9478878 | Msa0006550:CDS |
TGGAGATACGGGTTGATAAA+AGG | 0.317704 | 1_1:+9476227 | None:intergenic |
AGATCATTGTAGGTATAAAA+AGG | 0.319657 | 1_1:+9476504 | None:intergenic |
GGCCAGGATGGCGCATATAT+TGG | 0.322926 | 1_1:-9479506 | Msa0006550:CDS |
ATTGGAGTATATACTGGATT+TGG | 0.331812 | 1_1:-9481693 | Msa0006550:CDS |
TACGGTGGAAGATAAGTTAA+TGG | 0.338815 | 1_1:-9482416 | Msa0006550:CDS |
CACAGTACATTAACATAAAC+AGG | 0.339769 | 1_1:-9477712 | Msa0006550:intron |
TTAGTACGGCGGTTCAGAAC+TGG | 0.349681 | 1_1:-9479715 | Msa0006550:CDS |
GACTAAAATATGAAAATTTA+GGG | 0.352307 | 1_1:+9476264 | None:intergenic |
GCTGTTATTGGAGTATATAC+TGG | 0.356789 | 1_1:-9481699 | Msa0006550:CDS |
TCCCCAAATTTCCACCAATC+AGG | 0.366321 | 1_1:+9478876 | None:intergenic |
TTTGCTGCCGTTGTCCTTTG+AGG | 0.377114 | 1_1:+9481748 | None:intergenic |
GGTATGCTCGTTGGCTTGAT+TGG | 0.377919 | 1_1:-9476650 | Msa0006550:exon |
CTTTCTTCTCTTGCGTCGCT+TGG | 0.381177 | 1_1:-9483102 | Msa0006550:CDS |
TTTGAGGTACCCTTGGCTCT+TGG | 0.386477 | 1_1:+9481764 | None:intergenic |
TATGTTGTTTATTAGGGATC+TGG | 0.389785 | 1_1:-9481826 | Msa0006550:intron |
AAGAATGAATAGATCATTGT+AGG | 0.399103 | 1_1:+9476494 | None:intergenic |
GGATTTGCATAAATATCAAT+TGG | 0.403058 | 1_1:-9483247 | Msa0006550:five_prime_UTR |
CAAAGCTCTCAATGTTGTAT+TGG | 0.404506 | 1_1:+9476545 | None:intergenic |
GAGGATTGTGGAAGCTGAGA+TGG | 0.418121 | 1_1:-9481799 | Msa0006550:CDS |
AGGTATTTCCGACATGCATC+TGG | 0.427162 | 1_1:-9477764 | Msa0006550:CDS |
TGGAAGTGCTATATGATCAT+AGG | 0.436840 | 1_1:-9476454 | Msa0006550:three_prime_UTR |
TCTTGACCGTCGACGTGGCC+AGG | 0.439723 | 1_1:-9479522 | Msa0006550:CDS |
GACAGTATTGACATTGATCT+TGG | 0.440622 | 1_1:-9479665 | Msa0006550:intron |
CGCTTCGACGACGATGTTGT+TGG | 0.440629 | 1_1:+9483181 | None:intergenic |
AAAGGACAACGGCAGCAAAC+TGG | 0.445483 | 1_1:-9481744 | Msa0006550:CDS |
GCCTATGATGATACAACATT+GGG | 0.446536 | 1_1:-9477075 | Msa0006550:CDS |
TTTGTTAATATCACTGTAGC+AGG | 0.454772 | 1_1:-9483287 | Msa0006550:five_prime_UTR |
CTAGAGGCCTAAGGTTCTTA+CGG | 0.454953 | 1_1:-9482434 | Msa0006550:intron |
GAAGATAAGTTAATGGTACT+AGG | 0.459097 | 1_1:-9482409 | Msa0006550:CDS |
TCCCAATGTTGTATCATCAT+AGG | 0.460275 | 1_1:+9477074 | None:intergenic |
GTTGTCCTTTGAGGTACCCT+TGG | 0.464046 | 1_1:+9481757 | None:intergenic |
GGATCTGGAGAGGAGGATTG+TGG | 0.470848 | 1_1:-9481811 | Msa0006550:CDS |
ATGATACAACATTGGGATCA+TGG | 0.480900 | 1_1:-9477068 | Msa0006550:CDS |
CTCAAAAGAAATGTATTCAG+AGG | 0.485779 | 1_1:-9481663 | Msa0006550:CDS |
AACATTGGGATCATGGATGA+TGG | 0.485812 | 1_1:-9477061 | Msa0006550:CDS |
TAGTACGGCGGTTCAGAACT+GGG | 0.489724 | 1_1:-9479714 | Msa0006550:CDS |
CTTGGCTCTACGTCGCCGGC+AGG | 0.493176 | 1_1:-9483084 | Msa0006550:intron |
TGTCGTCTATATATGTTGAT+TGG | 0.496050 | 1_1:+9477034 | None:intergenic |
AAGAAAGCTAAGAGGAGAGA+AGG | 0.498995 | 1_1:+9483118 | None:intergenic |
TCCAAGCTATCACCTCGATT+AGG | 0.500386 | 1_1:+9480240 | None:intergenic |
TTCAGATAAGGTATGCTCGT+TGG | 0.505587 | 1_1:-9476659 | Msa0006550:intron |
TATATTGGATGCATGAAGTC+AGG | 0.508194 | 1_1:-9479491 | Msa0006550:CDS |
GAAGTCAGGAGACGTGATAT+CGG | 0.509651 | 1_1:-9479477 | Msa0006550:CDS |
TCCTAATCGAGGTGATAGCT+TGG | 0.510536 | 1_1:-9480241 | Msa0006550:CDS |
ATCCAATATATGCGCCATCC+TGG | 0.510550 | 1_1:+9479504 | None:intergenic |
GAAATGTATTCAGAGGGTCT+TGG | 0.520604 | 1_1:-9481656 | Msa0006550:CDS |
TCGTCGAAGCGAGGTGGAGG+AGG | 0.520744 | 1_1:-9483169 | Msa0006550:CDS |
CGCAAGAGAAGAAAGCTAAG+AGG | 0.524066 | 1_1:+9483110 | None:intergenic |
GTCGCTTGGCTCTACGTCGC+CGG | 0.534428 | 1_1:-9483088 | Msa0006550:CDS |
TGCCTATGATGATACAACAT+TGG | 0.539252 | 1_1:-9477076 | Msa0006550:CDS |
TCTTCCACCGTAAGAACCTT+AGG | 0.540041 | 1_1:+9482427 | None:intergenic |
TCGTCGTCGAAGCGAGGTGG+AGG | 0.540993 | 1_1:-9483172 | Msa0006550:CDS |
AGTTAATGGTACTAGGGTGC+AGG | 0.541667 | 1_1:-9482402 | Msa0006550:intron |
AGCTTTGGTATGAACCTGAT+TGG | 0.546372 | 1_1:-9478890 | Msa0006550:CDS |
GACCGTCGACGTGGCCAGGA+TGG | 0.547999 | 1_1:-9479518 | Msa0006550:CDS |
ACATGTTTCACTACTTGTCT+CGG | 0.550864 | 1_1:-9476615 | Msa0006550:three_prime_UTR |
CTTGGATCGCAATATTAATG+AGG | 0.558938 | 1_1:-9480223 | Msa0006550:CDS |
TTGTCGTTGGCCAAGAGCCA+AGG | 0.565453 | 1_1:-9481774 | Msa0006550:CDS |
CTGATGATCAAATATTGAAG+AGG | 0.566279 | 1_1:-9476395 | Msa0006550:three_prime_UTR |
CGCCATCCTGGCCACGTCGA+CGG | 0.574272 | 1_1:+9479516 | None:intergenic |
AAAACGTACGAGAGAGACAG+AGG | 0.580125 | 1_1:+9483315 | None:intergenic |
AAATCAATCAAACTCAGCGA+TGG | 0.580995 | 1_1:-9483212 | Msa0006550:exon |
TGTTGTATCATCATAGGCAT+AGG | 0.581817 | 1_1:+9477080 | None:intergenic |
AAGATAAGTTAATGGTACTA+GGG | 0.581844 | 1_1:-9482408 | Msa0006550:CDS |
AAACTGGTTCTTCTGACCGT+AGG | 0.585093 | 1_1:-9481728 | Msa0006550:CDS |
TGCTGCAGTAGCATCAGTAA+AGG | 0.586809 | 1_1:-9477003 | Msa0006550:intron |
TCTCAAGAAGAACTCCGCAC+AGG | 0.588568 | 1_1:-9482891 | Msa0006550:intron |
ACATTGGGATCATGGATGAT+GGG | 0.589197 | 1_1:-9477060 | Msa0006550:CDS |
TTATTAGGGATCTGGAGAGG+AGG | 0.593428 | 1_1:-9481818 | Msa0006550:intron |
TCAAAAGAAATGTATTCAGA+GGG | 0.598744 | 1_1:-9481662 | Msa0006550:CDS |
CAACATATATAGACGACAGT+CGG | 0.602712 | 1_1:-9477029 | Msa0006550:CDS |
AAGAGCCAAGGGTACCTCAA+AGG | 0.604992 | 1_1:-9481762 | Msa0006550:CDS |
TGTTTATTAGGGATCTGGAG+AGG | 0.609482 | 1_1:-9481821 | Msa0006550:intron |
AGCTGAGATGGAATTGTCGT+TGG | 0.610971 | 1_1:-9481787 | Msa0006550:CDS |
TAAAACAATAATAACAGAGG+AGG | 0.624271 | 1_1:+9476431 | None:intergenic |
TGTCGTTGGCCAAGAGCCAA+GGG | 0.624416 | 1_1:-9481773 | Msa0006550:CDS |
CAATAACAGCAAGAAGCCTA+CGG | 0.624587 | 1_1:+9481712 | None:intergenic |
GTTATTGACAGTCCTAATCG+AGG | 0.631555 | 1_1:-9480252 | Msa0006550:intron |
TTTGGTATGAACCTGATTGG+TGG | 0.633541 | 1_1:-9478887 | Msa0006550:CDS |
GCTCTTCTTGACCGTCGACG+TGG | 0.635544 | 1_1:-9479527 | Msa0006550:CDS |
ACCTGATTGGTGGAAATTTG+GGG | 0.648422 | 1_1:-9478877 | Msa0006550:CDS |
ACAACATCGTCGTCGAAGCG+AGG | 0.650469 | 1_1:-9483178 | Msa0006550:CDS |
TTGTCTCGGAGTCTAAAGAT+CGG | 0.651810 | 1_1:-9476601 | Msa0006550:three_prime_UTR |
ACATCGTCGTCGAAGCGAGG+TGG | 0.657917 | 1_1:-9483175 | Msa0006550:CDS |
CAAGCGAACCAGATGCATGT+CGG | 0.657962 | 1_1:+9477756 | None:intergenic |
AAAACTTGAAGAAAGAGGAG+TGG | 0.662821 | 1_1:-9480406 | Msa0006550:CDS |
GTATAAAACAATAATAACAG+AGG | 0.664545 | 1_1:+9476428 | None:intergenic |
GAGGCCTAAGGTTCTTACGG+TGG | 0.679944 | 1_1:-9482431 | Msa0006550:CDS |
AGAGGGTCTTGGATGCCTAG+AGG | 0.683490 | 1_1:-9481645 | Msa0006550:intron |
GAGACAAGTAGTGAAACATG+TGG | 0.694102 | 1_1:+9476617 | None:intergenic |
CAGGCAGTAACAGAGAGTTG+AGG | 0.699095 | 1_1:-9483268 | Msa0006550:five_prime_UTR |
AAGGGTACCTCAAAGGACAA+CGG | 0.709836 | 1_1:-9481755 | Msa0006550:CDS |
TTGGTAATAGGAAAGTCACG+AGG | 0.758498 | 1_1:-9479777 | Msa0006550:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAGATTTTATTTATTTTGT+AGG | + | chr1_1:9476256-9476275 | None:intergenic | 10.0% |
!!! | TTATTATTTTGTTCATATTT+AGG | - | chr1_1:9478537-9478556 | Msa0006550:intron | 10.0% |
!!! | TCAAAAAAAAAAAAAAGTAT+TGG | - | chr1_1:9478844-9478863 | Msa0006550:intron | 10.0% |
!!! | TTTCAATTTAAGATATATTA+AGG | + | chr1_1:9480847-9480866 | None:intergenic | 10.0% |
!!! | ATTTTATTTATTTTGTAGGA+AGG | + | chr1_1:9476252-9476271 | None:intergenic | 15.0% |
!! | AAAATTAAAACTGAAAAAAG+AGG | + | chr1_1:9476748-9476767 | None:intergenic | 15.0% |
!! | TCTTAATTGGAATTTAAATT+TGG | - | chr1_1:9478239-9478258 | Msa0006550:intron | 15.0% |
!! | CTTAATTGGAATTTAAATTT+GGG | - | chr1_1:9478240-9478259 | Msa0006550:intron | 15.0% |
!!! | CATTTATACTTTTATTTTGA+TGG | - | chr1_1:9478306-9478325 | Msa0006550:intron | 15.0% |
!!! | GTTTTTAATTTATACTTTGA+TGG | - | chr1_1:9478382-9478401 | Msa0006550:intron | 15.0% |
!! | AAATATTAAAACTTATCCTA+GGG | + | chr1_1:9478450-9478469 | None:intergenic | 15.0% |
!! | AAAATATTAAAACTTATCCT+AGG | + | chr1_1:9478451-9478470 | None:intergenic | 15.0% |
!!! | TTCAAACAAAAAAAAAGTAT+TGG | - | chr1_1:9478624-9478643 | Msa0006550:intron | 15.0% |
!! | GAAAATATGTATTAATATCA+TGG | + | chr1_1:9479275-9479294 | None:intergenic | 15.0% |
!!! | ACTGAATTGTTTTTTAAATT+TGG | - | chr1_1:9479512-9479531 | Msa0006550:CDS | 15.0% |
!! | AGAAATATAATTGTAATTCA+GGG | + | chr1_1:9480563-9480582 | None:intergenic | 15.0% |
!! | AAGAAATATAATTGTAATTC+AGG | + | chr1_1:9480564-9480583 | None:intergenic | 15.0% |
!! | TAAGTACTAATAACAAAAAT+TGG | - | chr1_1:9480952-9480971 | Msa0006550:intron | 15.0% |
!!! | GTAGTTTTTTTTTTTACTTT+TGG | - | chr1_1:9481395-9481414 | Msa0006550:intron | 15.0% |
!!! | TATAATTTTTTATCAGATTG+TGG | - | chr1_1:9481442-9481461 | Msa0006550:intron | 15.0% |
!!! | ATAATTTTTTATCAGATTGT+GGG | - | chr1_1:9481443-9481462 | Msa0006550:intron | 15.0% |
!!! | TGTTCTTTTAATATATAGAT+CGG | - | chr1_1:9481622-9481641 | Msa0006550:intron | 15.0% |
!! | ATACTACTAAAAAAGTAAAA+AGG | + | chr1_1:9481727-9481746 | None:intergenic | 15.0% |
!!! | TTTTTACTTTTTTAGTAGTA+TGG | - | chr1_1:9481726-9481745 | Msa0006550:CDS | 15.0% |
!! | AAAAATAAAACAACTCATTA+TGG | + | chr1_1:9481756-9481775 | None:intergenic | 15.0% |
!!! | AGTGTTGATTTTTTTTTTTT+TGG | - | chr1_1:9481779-9481798 | Msa0006550:CDS | 15.0% |
!!! | TGATTTTTTTTTTTTTGGAA+TGG | - | chr1_1:9481784-9481803 | Msa0006550:CDS | 15.0% |
!! | GACTAAAATATGAAAATTTA+GGG | + | chr1_1:9483342-9483361 | None:intergenic | 15.0% |
!!! | TTTTTTATCTCAAACACTAA+CGG | - | chr1_1:9476620-9476639 | Msa0006550:three_prime_UTR | 20.0% |
!!! | TTGAAATTCATGTTGTTTTT+CGG | - | chr1_1:9477087-9477106 | Msa0006550:CDS | 20.0% |
!!! | GATATTTAGTTTGATTTTGT+CGG | - | chr1_1:9477294-9477313 | Msa0006550:intron | 20.0% |
!! | TTATTGACCAAACAATAAAT+AGG | - | chr1_1:9477617-9477636 | Msa0006550:intron | 20.0% |
!! | ATTTGTTCCTATTTATTGTT+TGG | + | chr1_1:9477627-9477646 | None:intergenic | 20.0% |
!! | TGCAAATACAACAATTATAA+AGG | - | chr1_1:9477653-9477672 | Msa0006550:intron | 20.0% |
!!! | TTTTATGATGTTGTTTTGTA+AGG | - | chr1_1:9477744-9477763 | Msa0006550:CDS | 20.0% |
!!! | TTTATGATGTTGTTTTGTAA+GGG | - | chr1_1:9477745-9477764 | Msa0006550:CDS | 20.0% |
!!! | TTATGTGTATGTTGTTTATT+AGG | - | chr1_1:9477770-9477789 | Msa0006550:intron | 20.0% |
!!! | TATGTGTATGTTGTTTATTA+GGG | - | chr1_1:9477771-9477790 | Msa0006550:intron | 20.0% |
!! | AAAACTAGAAATCATGAAAA+TGG | + | chr1_1:9478415-9478434 | None:intergenic | 20.0% |
!!! | ATTTTATCTAGCAAATGTTA+AGG | - | chr1_1:9478466-9478485 | Msa0006550:intron | 20.0% |
!!! | TAACTTTTTCATAATAGTAC+TGG | - | chr1_1:9478588-9478607 | Msa0006550:intron | 20.0% |
!!! | TAATTGAGTTGTTCATATTT+AGG | - | chr1_1:9478756-9478775 | Msa0006550:intron | 20.0% |
!! | ACTGTCAATAACAAATTTAA+AGG | + | chr1_1:9479343-9479362 | None:intergenic | 20.0% |
!!! | ATAATGCAAGTTTTAAATGA+GGG | + | chr1_1:9479618-9479637 | None:intergenic | 20.0% |
!!! | AATAATGCAAGTTTTAAATG+AGG | + | chr1_1:9479619-9479638 | None:intergenic | 20.0% |
!!! | TTCTGAAATATTTCAATCTT+AGG | - | chr1_1:9479638-9479657 | Msa0006550:intron | 20.0% |
!!! | TCTGAAATATTTCAATCTTA+GGG | - | chr1_1:9479639-9479658 | Msa0006550:intron | 20.0% |
!!! | TGGTTAAATTATTCTTTTTC+TGG | - | chr1_1:9479683-9479702 | Msa0006550:CDS | 20.0% |
!!! | TTAAATTATTCTTTTTCTGG+TGG | - | chr1_1:9479686-9479705 | Msa0006550:CDS | 20.0% |
!!! | AAGAAGATTTTTGCTTTTTT+AGG | + | chr1_1:9479869-9479888 | None:intergenic | 20.0% |
!! | AATAATGAATGCATGTATTT+AGG | - | chr1_1:9479973-9479992 | Msa0006550:intron | 20.0% |
!! | TATTTATGATAAAAGATGTG+TGG | - | chr1_1:9480187-9480206 | Msa0006550:intron | 20.0% |
!! | AATAATTCTGAACACAAAAA+TGG | + | chr1_1:9480327-9480346 | None:intergenic | 20.0% |
!!! | TGATTTTCAATTGAGATTTT+TGG | - | chr1_1:9480652-9480671 | Msa0006550:intron | 20.0% |
!! | AACAACAAAGAATAATGTAT+TGG | + | chr1_1:9480870-9480889 | None:intergenic | 20.0% |
!! | AATGGGAAATTAATAATCTT+TGG | - | chr1_1:9480904-9480923 | Msa0006550:intron | 20.0% |
!! | TACTAATAACAAAAATTGGA+GGG | - | chr1_1:9480956-9480975 | Msa0006550:intron | 20.0% |
!! | GTGTTTAAACAGTATAAATT+TGG | + | chr1_1:9481044-9481063 | None:intergenic | 20.0% |
!! | CAATATGATTGAAACAATTT+AGG | + | chr1_1:9481083-9481102 | None:intergenic | 20.0% |
!! | AAAAAAAAAACTACAAGCAA+TGG | + | chr1_1:9481389-9481408 | None:intergenic | 20.0% |
!! | CATACTCATATATAAGTTAA+GGG | + | chr1_1:9481596-9481615 | None:intergenic | 20.0% |
!! | ACATACTCATATATAAGTTA+AGG | + | chr1_1:9481597-9481616 | None:intergenic | 20.0% |
!!! | TTTATTGCTTTATTGTCTTT+AGG | - | chr1_1:9481819-9481838 | Msa0006550:intron | 20.0% |
!!! | ACTTTTAATAGCATGTTTTA+TGG | + | chr1_1:9482176-9482195 | None:intergenic | 20.0% |
!! | GACGTATGTATAATATAAAA+AGG | + | chr1_1:9482324-9482343 | None:intergenic | 20.0% |
!! | GTATAAAACAATAATAACAG+AGG | + | chr1_1:9483178-9483197 | None:intergenic | 20.0% |
!!! | AAAAAATTCAAAGAAAGCAT+AGG | - | chr1_1:9483231-9483250 | Msa0006550:five_prime_UTR | 20.0% |
!!! | AAAAATATAATTTGCTGTCT+GGG | + | chr1_1:9483291-9483310 | None:intergenic | 20.0% |
!!! | ATTTTTCCTTTTTTCTTTTG+CGG | - | chr1_1:9483305-9483324 | Msa0006550:five_prime_UTR | 20.0% |
!! | GGACTAAAATATGAAAATTT+AGG | + | chr1_1:9483343-9483362 | None:intergenic | 20.0% |
!!! | ATAAAAGGCAATTTTTATCA+GGG | + | chr1_1:9483364-9483383 | None:intergenic | 20.0% |
!!! | TTATTTATTTTGTAGGAAGG+TGG | + | chr1_1:9476249-9476268 | None:intergenic | 25.0% |
! | GGATTTGCATAAATATCAAT+TGG | - | chr1_1:9476356-9476375 | Msa0006550:three_prime_UTR | 25.0% |
! | GAATTGAAATGAATGAGAAT+CGG | + | chr1_1:9476559-9476578 | None:intergenic | 25.0% |
! | ATCATGATGAAAAATGTGTT+AGG | - | chr1_1:9476648-9476667 | Msa0006550:exon | 25.0% |
! | ATGAAAAATGTGTTAGGTTA+TGG | - | chr1_1:9476654-9476673 | Msa0006550:CDS | 25.0% |
! | TTAAAGTTCATTTCTGTTTG+AGG | - | chr1_1:9476766-9476785 | Msa0006550:intron | 25.0% |
!!! | GATTTATTTTTTGTTGCTAG+AGG | - | chr1_1:9477153-9477172 | Msa0006550:intron | 25.0% |
! | AAGATAAGTTAATGGTACTA+GGG | - | chr1_1:9477195-9477214 | Msa0006550:intron | 25.0% |
! | TTAGTTATTTACCATGAGAT+AGG | + | chr1_1:9477592-9477611 | None:intergenic | 25.0% |
! | TATCTCATGGTAAATAACTA+AGG | - | chr1_1:9477591-9477610 | Msa0006550:intron | 25.0% |
! | ATCTCATGGTAAATAACTAA+GGG | - | chr1_1:9477592-9477611 | Msa0006550:intron | 25.0% |
! | TCAAAAGAAATGTATTCAGA+GGG | - | chr1_1:9477941-9477960 | Msa0006550:intron | 25.0% |
! | TCTACTGATATCAATTATGT+TGG | - | chr1_1:9478159-9478178 | Msa0006550:intron | 25.0% |
!! | CTCTTAATTTGAAATTGCAT+GGG | - | chr1_1:9478276-9478295 | Msa0006550:intron | 25.0% |
! | ACTCAATTAAATTTCCTTCT+CGG | + | chr1_1:9478745-9478764 | None:intergenic | 25.0% |
!!! | CAACTTTTTCATAATAGTAC+CGG | - | chr1_1:9478807-9478826 | Msa0006550:intron | 25.0% |
! | TTTGAAAAATCTCACTAAAC+CGG | + | chr1_1:9478610-9478629 | None:intergenic | 25.0% |
!!! | TTTTTTGTGTTTCTGTAAGA+AGG | - | chr1_1:9478950-9478969 | Msa0006550:intron | 25.0% |
!! | ATTTGCATGGTTATCTTTTT+AGG | - | chr1_1:9479119-9479138 | Msa0006550:intron | 25.0% |
!!! | TCTTTCTTCAAGTTTTTTCA+AGG | + | chr1_1:9479193-9479212 | None:intergenic | 25.0% |
! | TTGAAAAAACTTGAAGAAAG+AGG | - | chr1_1:9479192-9479211 | Msa0006550:intron | 25.0% |
! | ATCATAGATGCTTAACATTT+AGG | - | chr1_1:9479538-9479557 | Msa0006550:CDS | 25.0% |
! | TCATAGATGCTTAACATTTA+GGG | - | chr1_1:9479539-9479558 | Msa0006550:CDS | 25.0% |
!! | ATTTAGGGTATTAACAGTTT+AGG | - | chr1_1:9479554-9479573 | Msa0006550:intron | 25.0% |
!! | TTTAGGGTATTAACAGTTTA+GGG | - | chr1_1:9479555-9479574 | Msa0006550:intron | 25.0% |
!!! | TAATGCAAGTTTTAAATGAG+GGG | + | chr1_1:9479617-9479636 | None:intergenic | 25.0% |
!!! | AAAAGCATTGATAAACACAA+TGG | + | chr1_1:9479753-9479772 | None:intergenic | 25.0% |
! | AGCAAAAATCTTCTTTAGTA+CGG | - | chr1_1:9479874-9479893 | Msa0006550:intron | 25.0% |
! | AGCTTAAAGAAAAATCTTCT+GGG | + | chr1_1:9480247-9480266 | None:intergenic | 25.0% |
! | AGATAATTAACACATTCGAT+GGG | + | chr1_1:9480413-9480432 | None:intergenic | 25.0% |
! | AAGATAATTAACACATTCGA+TGG | + | chr1_1:9480414-9480433 | None:intergenic | 25.0% |
! | CGAATGTGTTAATTATCTTT+AGG | - | chr1_1:9480415-9480434 | Msa0006550:CDS | 25.0% |
!! | CAATTCTTTTCTCATCTAAA+GGG | + | chr1_1:9480774-9480793 | None:intergenic | 25.0% |
!! | TGTTTTATCATTGAACTGAA+TGG | - | chr1_1:9480886-9480905 | Msa0006550:intron | 25.0% |
!! | GTTTTATCATTGAACTGAAT+GGG | - | chr1_1:9480887-9480906 | Msa0006550:intron | 25.0% |
!!! | TTTGTTATTAGTACTTAGCA+CGG | + | chr1_1:9480949-9480968 | None:intergenic | 25.0% |
! | GTACTAATAACAAAAATTGG+AGG | - | chr1_1:9480955-9480974 | Msa0006550:intron | 25.0% |
! | GTTACAAATAGGAAAAATCT+TGG | + | chr1_1:9481364-9481383 | None:intergenic | 25.0% |
!! | CTTTTAATATATAGATCGGT+TGG | - | chr1_1:9481626-9481645 | Msa0006550:intron | 25.0% |
! | TATGGTATTATAACTCCTAA+TGG | - | chr1_1:9481654-9481673 | Msa0006550:CDS | 25.0% |
! | TGTTATACTTTCGAAGAATT+TGG | - | chr1_1:9481868-9481887 | Msa0006550:intron | 25.0% |
! | ACAATCTTTGCAATTAACTT+AGG | - | chr1_1:9481929-9481948 | Msa0006550:intron | 25.0% |
!!! | GATACACTACATTTTGTTTT+TGG | + | chr1_1:9482495-9482514 | None:intergenic | 25.0% |
!! | AAGTTCAATTTTGTGAACTT+AGG | + | chr1_1:9482902-9482921 | None:intergenic | 25.0% |
! | GGTATAAAAAGGAATTCTAT+TGG | + | chr1_1:9483091-9483110 | None:intergenic | 25.0% |
! | AGATCATTGTAGGTATAAAA+AGG | + | chr1_1:9483102-9483121 | None:intergenic | 25.0% |
! | AAGAATGAATAGATCATTGT+AGG | + | chr1_1:9483112-9483131 | None:intergenic | 25.0% |
!! | CTTTTAGATACACTACATTA+TGG | - | chr1_1:9483129-9483148 | Msa0006550:CDS | 25.0% |
! | TAAAACAATAATAACAGAGG+AGG | + | chr1_1:9483175-9483194 | None:intergenic | 25.0% |
!!! | GAAAAATATAATTTGCTGTC+TGG | + | chr1_1:9483292-9483311 | None:intergenic | 25.0% |
!! | GATAAAAGGCAATTTTTATC+AGG | + | chr1_1:9483365-9483384 | None:intergenic | 25.0% |
TTTGTTAATATCACTGTAGC+AGG | - | chr1_1:9476316-9476335 | Msa0006550:three_prime_UTR | 30.0% | |
! | CCATATTGTTTTCACTGTTT+CGG | - | chr1_1:9476855-9476874 | Msa0006550:intron | 30.0% |
GAAGATAAGTTAATGGTACT+AGG | - | chr1_1:9477194-9477213 | Msa0006550:intron | 30.0% | |
TATTTGATATTTGACAACGC+TGG | - | chr1_1:9477720-9477739 | Msa0006550:CDS | 30.0% | |
! | TATGTTGTTTATTAGGGATC+TGG | - | chr1_1:9477777-9477796 | Msa0006550:intron | 30.0% |
ATTGGAGTATATACTGGATT+TGG | - | chr1_1:9477910-9477929 | Msa0006550:intron | 30.0% | |
CTCAAAAGAAATGTATTCAG+AGG | - | chr1_1:9477940-9477959 | Msa0006550:intron | 30.0% | |
CCATGCAATTTCAAATTAAG+AGG | + | chr1_1:9478278-9478297 | None:intergenic | 30.0% | |
! | CCTCTTAATTTGAAATTGCA+TGG | - | chr1_1:9478275-9478294 | Msa0006550:intron | 30.0% |
!! | TTTTCTATCTTTGTTTCCCT+AGG | - | chr1_1:9478431-9478450 | Msa0006550:intron | 30.0% |
ATAATGAGAACGTAAACAGT+TGG | - | chr1_1:9478916-9478935 | Msa0006550:intron | 30.0% | |
ACAGAAACACAAAAAACAAG+AGG | + | chr1_1:9478946-9478965 | None:intergenic | 30.0% | |
CTCTTGTGTAACTTCATATT+AGG | + | chr1_1:9479026-9479045 | None:intergenic | 30.0% | |
TGTGTTGAGTATTATTTGCA+TGG | - | chr1_1:9479106-9479125 | Msa0006550:intron | 30.0% | |
! | GACATTTTCTGTTCAAATTC+TGG | - | chr1_1:9479158-9479177 | Msa0006550:intron | 30.0% |
! | TCATACGTTTTGTAATTGGT+CGG | - | chr1_1:9479220-9479239 | Msa0006550:intron | 30.0% |
TATTAATATCATGGCCAGTA+TGG | + | chr1_1:9479266-9479285 | None:intergenic | 30.0% | |
! | TCAAGAAATCTTTTGTTGAG+CGG | + | chr1_1:9479410-9479429 | None:intergenic | 30.0% |
CCTATTACCAAAAAAACAGA+TGG | + | chr1_1:9479817-9479836 | None:intergenic | 30.0% | |
!!! | CCATCTGTTTTTTTGGTAAT+AGG | - | chr1_1:9479814-9479833 | Msa0006550:intron | 30.0% |
AAAAATCTTCTTTAGTACGG+CGG | - | chr1_1:9479877-9479896 | Msa0006550:intron | 30.0% | |
CGAGTCTTAACTTTATTCAT+TGG | - | chr1_1:9480034-9480053 | Msa0006550:intron | 30.0% | |
ATCAGAGTTAGTTCAGATAA+AGG | + | chr1_1:9480163-9480182 | None:intergenic | 30.0% | |
CATCTACACTACATAAAAAC+TGG | + | chr1_1:9480222-9480241 | None:intergenic | 30.0% | |
! | CAGTTTTTATGTAGTGTAGA+TGG | - | chr1_1:9480220-9480239 | Msa0006550:CDS | 30.0% |
CAGCTTAAAGAAAAATCTTC+TGG | + | chr1_1:9480248-9480267 | None:intergenic | 30.0% | |
AAATTTCCTTGGCAAATATG+AGG | + | chr1_1:9480445-9480464 | None:intergenic | 30.0% | |
!!! | AAGCTCCTTATTTTGTTTTC+AGG | - | chr1_1:9480686-9480705 | Msa0006550:intron | 30.0% |
!!! | AGCTCCTTATTTTGTTTTCA+GGG | - | chr1_1:9480687-9480706 | Msa0006550:intron | 30.0% |
TTTCCCCTGAAAACAAAATA+AGG | + | chr1_1:9480694-9480713 | None:intergenic | 30.0% | |
! | CCAATTCTTTTCTCATCTAA+AGG | + | chr1_1:9480775-9480794 | None:intergenic | 30.0% |
CCTTTAGATGAGAAAAGAAT+TGG | - | chr1_1:9480772-9480791 | Msa0006550:intron | 30.0% | |
AATCAGATTGAAGATCATTC+AGG | + | chr1_1:9480821-9480840 | None:intergenic | 30.0% | |
GAAAATGCATAATTCTATCG+CGG | + | chr1_1:9481120-9481139 | None:intergenic | 30.0% | |
! | TCTATTTTCCTTCTTTACCA+TGG | + | chr1_1:9481310-9481329 | None:intergenic | 30.0% |
AAGCAATGGATGTTACAAAT+AGG | + | chr1_1:9481375-9481394 | None:intergenic | 30.0% | |
! | AATATATAGATCGGTTGGTA+CGG | - | chr1_1:9481631-9481650 | Msa0006550:intron | 30.0% |
!!! | TGTCAAAAGCATTTTCCATT+AGG | + | chr1_1:9481672-9481691 | None:intergenic | 30.0% |
GTCTCGATGTATAAATATTG+CGG | - | chr1_1:9481695-9481714 | Msa0006550:CDS | 30.0% | |
CACAGTACATTAACATAAAC+AGG | - | chr1_1:9481891-9481910 | Msa0006550:intron | 30.0% | |
TCATCCAAAATGCTAAATTG+AGG | + | chr1_1:9481980-9481999 | None:intergenic | 30.0% | |
ATGTTCCTATTTCCAAGAAT+AGG | - | chr1_1:9482142-9482161 | Msa0006550:intron | 30.0% | |
! | AAGATGTAATAACTTGTGCT+CGG | + | chr1_1:9482354-9482373 | None:intergenic | 30.0% |
AGCACAAGTTATTACATCTT+CGG | - | chr1_1:9482354-9482373 | Msa0006550:intron | 30.0% | |
TGTCGTCTATATATGTTGAT+TGG | + | chr1_1:9482572-9482591 | None:intergenic | 30.0% | |
ACTTTATGACATTGAATCAG+TGG | - | chr1_1:9482653-9482672 | Msa0006550:intron | 30.0% | |
AAGCACAATCAGTGTAAATT+AGG | + | chr1_1:9482838-9482857 | None:intergenic | 30.0% | |
! | AATTTTGTGAACTTAGGTAG+GGG | + | chr1_1:9482896-9482915 | None:intergenic | 30.0% |
! | CAATTTTGTGAACTTAGGTA+GGG | + | chr1_1:9482897-9482916 | None:intergenic | 30.0% |
! | TCAATTTTGTGAACTTAGGT+AGG | + | chr1_1:9482898-9482917 | None:intergenic | 30.0% |
AGCATACCTTATCTGAAAAT+TGG | + | chr1_1:9482941-9482960 | None:intergenic | 30.0% | |
CTGATGATCAAATATTGAAG+AGG | - | chr1_1:9483208-9483227 | Msa0006550:exon | 30.0% | |
! | TTTTGTAGGAAGGTGGTAAA+TGG | + | chr1_1:9476242-9476261 | None:intergenic | 35.0% |
AAATCAATCAAACTCAGCGA+TGG | - | chr1_1:9476391-9476410 | Msa0006550:three_prime_UTR | 35.0% | |
GAAATGAATGAGAATCGGAT+CGG | + | chr1_1:9476554-9476573 | None:intergenic | 35.0% | |
CCGAAACAGTGAAAACAATA+TGG | + | chr1_1:9476858-9476877 | None:intergenic | 35.0% | |
ATGCAATTTCATCTCGATGT+TGG | + | chr1_1:9476982-9477001 | None:intergenic | 35.0% | |
! | TGAAGCACTAATAACAGACA+TGG | + | chr1_1:9477048-9477067 | None:intergenic | 35.0% |
TACGGTGGAAGATAAGTTAA+TGG | - | chr1_1:9477187-9477206 | Msa0006550:intron | 35.0% | |
!!! | TTCGGTTGATTTGTCGTTTT+TGG | - | chr1_1:9477270-9477289 | Msa0006550:intron | 35.0% |
CAACATCTATTCCTATCTCA+TGG | - | chr1_1:9477578-9477597 | Msa0006550:intron | 35.0% | |
AAATATAGCGTGTAGTGCAA+CGG | + | chr1_1:9477705-9477724 | None:intergenic | 35.0% | |
GCTGTTATTGGAGTATATAC+TGG | - | chr1_1:9477904-9477923 | Msa0006550:intron | 35.0% | |
! | CTAGAGGTATGTTTGGAATT+CGG | - | chr1_1:9477974-9477993 | Msa0006550:intron | 35.0% |
!!! | TCGTCTTTTTTTGGTTACGA+AGG | - | chr1_1:9478035-9478054 | Msa0006550:intron | 35.0% |
!!! | TCTTTTTTTGGTTACGAAGG+AGG | - | chr1_1:9478038-9478057 | Msa0006550:intron | 35.0% |
TAGTAGTTAGTAGAAGACAG+TGG | - | chr1_1:9478216-9478235 | Msa0006550:intron | 35.0% | |
! | TAGAAGACAGTGGTCTTAAT+TGG | - | chr1_1:9478226-9478245 | Msa0006550:intron | 35.0% |
TTAAGGATATAATGCACTGC+AGG | - | chr1_1:9478483-9478502 | Msa0006550:intron | 35.0% | |
ATAACGAGAACGTAAACAGT+TGG | - | chr1_1:9478694-9478713 | Msa0006550:intron | 35.0% | |
GGAGAATCACAAAAAACTAG+AGG | + | chr1_1:9478724-9478743 | None:intergenic | 35.0% | |
!!! | TTTTTTGTGATTCTCCGAGA+AGG | - | chr1_1:9478728-9478747 | Msa0006550:intron | 35.0% |
! | TTTTCTGTTCAAATTCTGGC+AGG | - | chr1_1:9479162-9479181 | Msa0006550:intron | 35.0% |
AAAACTTGAAGAAAGAGGAG+TGG | - | chr1_1:9479197-9479216 | Msa0006550:intron | 35.0% | |
! | GTGGTCATACGTTTTGTAAT+TGG | - | chr1_1:9479216-9479235 | Msa0006550:intron | 35.0% |
CTTGGATCGCAATATTAATG+AGG | - | chr1_1:9479380-9479399 | Msa0006550:intron | 35.0% | |
ATTAGCTCAATCCTTTACCT+TGG | - | chr1_1:9479462-9479481 | Msa0006550:intron | 35.0% | |
ATCTAGTACATGCATATGCA+AGG | - | chr1_1:9479580-9479599 | Msa0006550:intron | 35.0% | |
!! | TGGTGGAACTAAAGTTTTGA+TGG | - | chr1_1:9479703-9479722 | Msa0006550:CDS | 35.0% |
!! | GGTGGAACTAAAGTTTTGAT+GGG | - | chr1_1:9479704-9479723 | Msa0006550:CDS | 35.0% |
!! | GAACTAAAGTTTTGATGGGA+TGG | - | chr1_1:9479708-9479727 | Msa0006550:CDS | 35.0% |
! | TATACTGAGCTTGTTCAGTA+AGG | + | chr1_1:9479786-9479805 | None:intergenic | 35.0% |
!!! | AGCTTGACCATCTGTTTTTT+TGG | - | chr1_1:9479807-9479826 | Msa0006550:intron | 35.0% |
!! | GACAGTATTGACATTGATCT+TGG | - | chr1_1:9479938-9479957 | Msa0006550:intron | 35.0% |
!! | GACATTGATCTTGGTAATGA+TGG | - | chr1_1:9479947-9479966 | Msa0006550:intron | 35.0% |
! | TTTATTCATTGGCCTAACAG+AGG | - | chr1_1:9480045-9480064 | Msa0006550:intron | 35.0% |
! | TTATTCATTGGCCTAACAGA+GGG | - | chr1_1:9480046-9480065 | Msa0006550:intron | 35.0% |
TATATTGGATGCATGAAGTC+AGG | - | chr1_1:9480112-9480131 | Msa0006550:intron | 35.0% | |
!!! | GCTCCTTATTTTGTTTTCAG+GGG | - | chr1_1:9480688-9480707 | Msa0006550:intron | 35.0% |
AACCTGATTGGTGGAAATTT+GGG | - | chr1_1:9480725-9480744 | Msa0006550:intron | 35.0% | |
AAGAGATGACAGCATATAAC+AGG | + | chr1_1:9481019-9481038 | None:intergenic | 35.0% | |
! | TAATTGGTGATTGCATGCAA+AGG | + | chr1_1:9481146-9481165 | None:intergenic | 35.0% |
TGCATGCAATCACCAATTAA+TGG | - | chr1_1:9481147-9481166 | Msa0006550:intron | 35.0% | |
CACCAATTAATGGAATCATC+TGG | - | chr1_1:9481157-9481176 | Msa0006550:intron | 35.0% | |
GACCAGATGATTCCATTAAT+TGG | + | chr1_1:9481162-9481181 | None:intergenic | 35.0% | |
TCAGTAGTGATGTGAAAAAC+TGG | - | chr1_1:9481204-9481223 | Msa0006550:intron | 35.0% | |
AGCAATCCATTAAACCCATA+TGG | + | chr1_1:9481243-9481262 | None:intergenic | 35.0% | |
GAGTTTAATAGCATTCACCA+TGG | - | chr1_1:9481290-9481309 | Msa0006550:intron | 35.0% | |
CATTATGACCATCCTTTCAT+CGG | - | chr1_1:9481491-9481510 | Msa0006550:intron | 35.0% | |
ATTATGACCATCCTTTCATC+GGG | - | chr1_1:9481492-9481511 | Msa0006550:intron | 35.0% | |
AGAATGTAGAACTCTTTGAC+AGG | - | chr1_1:9481562-9481581 | Msa0006550:intron | 35.0% | |
TATATAAGTTAAGGGACACG+TGG | + | chr1_1:9481588-9481607 | None:intergenic | 35.0% | |
CGATGTATAAATATTGCGGA+TGG | - | chr1_1:9481699-9481718 | Msa0006550:CDS | 35.0% | |
AAAGCAATAAAGATCAACGC+TGG | + | chr1_1:9481810-9481829 | None:intergenic | 35.0% | |
GCATCTAGATGTCCTAATTT+CGG | - | chr1_1:9482010-9482029 | Msa0006550:intron | 35.0% | |
ACTCTCAATTAGCCGAAATT+AGG | + | chr1_1:9482025-9482044 | None:intergenic | 35.0% | |
AGGAGGGTTTCGATATTAAT+CGG | - | chr1_1:9482046-9482065 | Msa0006550:intron | 35.0% | |
TCTAATACCAGCCAAGAATA+TGG | + | chr1_1:9482085-9482104 | None:intergenic | 35.0% | |
TGTGTCCTATTCTTGGAAAT+AGG | + | chr1_1:9482150-9482169 | None:intergenic | 35.0% | |
! | ATACTAATCTGACTGGCTAT+AGG | + | chr1_1:9482269-9482288 | None:intergenic | 35.0% |
GGAAAGAATACTAATCTGAC+TGG | + | chr1_1:9482276-9482295 | None:intergenic | 35.0% | |
! | GATTTTTCTCTCAACAGAAC+AGG | + | chr1_1:9482297-9482316 | None:intergenic | 35.0% |
GCACAAGTTATTACATCTTC+GGG | - | chr1_1:9482355-9482374 | Msa0006550:intron | 35.0% | |
TGTTGTATCATCATAGGCAT+AGG | + | chr1_1:9482526-9482545 | None:intergenic | 35.0% | |
TGCCTATGATGATACAACAT+TGG | - | chr1_1:9482527-9482546 | Msa0006550:intron | 35.0% | |
GCCTATGATGATACAACATT+GGG | - | chr1_1:9482528-9482547 | Msa0006550:intron | 35.0% | |
TCCCAATGTTGTATCATCAT+AGG | + | chr1_1:9482532-9482551 | None:intergenic | 35.0% | |
ATGATACAACATTGGGATCA+TGG | - | chr1_1:9482535-9482554 | Msa0006550:intron | 35.0% | |
CAACATATATAGACGACAGT+CGG | - | chr1_1:9482574-9482593 | Msa0006550:intron | 35.0% | |
AATTGAACTTGCCTTACTAG+TGG | - | chr1_1:9482912-9482931 | Msa0006550:CDS | 35.0% | |
AAAATTGGACACCACTAGTA+AGG | + | chr1_1:9482926-9482945 | None:intergenic | 35.0% | |
! | TGGTGTCCAATTTTCAGATA+AGG | - | chr1_1:9482932-9482951 | Msa0006550:CDS | 35.0% |
ACATGTTTCACTACTTGTCT+CGG | - | chr1_1:9482988-9483007 | Msa0006550:intron | 35.0% | |
CAAAGCTCTCAATGTTGTAT+TGG | + | chr1_1:9483061-9483080 | None:intergenic | 35.0% | |
!! | TGGAAGTGCTATATGATCAT+AGG | - | chr1_1:9483149-9483168 | Msa0006550:CDS | 35.0% |
!! | AAAGCACCGCAAAAGAAAAA+AGG | + | chr1_1:9483314-9483333 | None:intergenic | 35.0% |
!!! | TTTTTTCTTTTGCGGTGCTT+TGG | - | chr1_1:9483313-9483332 | Msa0006550:five_prime_UTR | 35.0% |
AAGAAAGCTAAGAGGAGAGA+AGG | + | chr1_1:9476488-9476507 | None:intergenic | 40.0% | |
ATGAGAATCGGATCGGAATT+AGG | + | chr1_1:9476547-9476566 | None:intergenic | 40.0% | |
GAGGAAGAAAAAAACCTGTG+CGG | + | chr1_1:9476729-9476748 | None:intergenic | 40.0% | |
ACTGTTTCGGATATGAAGCA+CGG | - | chr1_1:9476868-9476887 | Msa0006550:intron | 40.0% | |
ATACTGACACTTCTGATCGA+AGG | - | chr1_1:9476927-9476946 | Msa0006550:intron | 40.0% | |
! | TTTTTGTTGCTAGAGGCCTA+AGG | - | chr1_1:9477160-9477179 | Msa0006550:intron | 40.0% |
CCTTAAAACGACAACTACAG+AGG | + | chr1_1:9477462-9477481 | None:intergenic | 40.0% | |
!!! | CCTCTGTAGTTGTCGTTTTA+AGG | - | chr1_1:9477459-9477478 | Msa0006550:intron | 40.0% |
TGTTTATTAGGGATCTGGAG+AGG | - | chr1_1:9477782-9477801 | Msa0006550:intron | 40.0% | |
CAATAACAGCAAGAAGCCTA+CGG | + | chr1_1:9477894-9477913 | None:intergenic | 40.0% | |
GAAATGTATTCAGAGGGTCT+TGG | - | chr1_1:9477947-9477966 | Msa0006550:intron | 40.0% | |
CGAATTCCAAACATACCTCT+AGG | + | chr1_1:9477976-9477995 | None:intergenic | 40.0% | |
!!! | GTGCTTCAGTCGTCTTTTTT+TGG | - | chr1_1:9478026-9478045 | Msa0006550:intron | 40.0% |
AGGCTAAAGTAGAGGCAAAT+TGG | - | chr1_1:9478091-9478110 | Msa0006550:intron | 40.0% | |
GTTGGCTGAAATGCAAACTT+TGG | - | chr1_1:9478177-9478196 | Msa0006550:intron | 40.0% | |
! | TACGTTTTGTAATTGGTCGG+AGG | - | chr1_1:9479223-9479242 | Msa0006550:intron | 40.0% |
TTACACGCACTTATCCATAC+TGG | - | chr1_1:9479249-9479268 | Msa0006550:intron | 40.0% | |
GTTATTGACAGTCCTAATCG+AGG | - | chr1_1:9479351-9479370 | Msa0006550:intron | 40.0% | |
CACAACACAATCCAAGGTAA+AGG | + | chr1_1:9479476-9479495 | None:intergenic | 40.0% | |
GGAGACTTGATTCATTGATG+TGG | - | chr1_1:9479660-9479679 | Msa0006550:intron | 40.0% | |
GACTTGATTCATTGATGTGG+TGG | - | chr1_1:9479663-9479682 | Msa0006550:intron | 40.0% | |
! | TTGGTAATAGGAAAGTCACG+AGG | - | chr1_1:9479826-9479845 | Msa0006550:intron | 40.0% |
GAGCAATTAAACCCTCTGTT+AGG | + | chr1_1:9480060-9480079 | None:intergenic | 40.0% | |
ACATTAACCTCAAAACGCCA+GGG | + | chr1_1:9480473-9480492 | None:intergenic | 40.0% | |
AGGGAGAAAAGATTAAGCAC+AGG | + | chr1_1:9480544-9480563 | None:intergenic | 40.0% | |
!! | TTGTTTTCAGGGGAAAGCTT+TGG | - | chr1_1:9480698-9480717 | Msa0006550:intron | 40.0% |
! | AGCTTTGGTATGAACCTGAT+TGG | - | chr1_1:9480713-9480732 | Msa0006550:intron | 40.0% |
TTTGGTATGAACCTGATTGG+TGG | - | chr1_1:9480716-9480735 | Msa0006550:intron | 40.0% | |
GAACCTGATTGGTGGAAATT+TGG | - | chr1_1:9480724-9480743 | Msa0006550:intron | 40.0% | |
ACCTGATTGGTGGAAATTTG+GGG | - | chr1_1:9480726-9480745 | Msa0006550:intron | 40.0% | |
AGCATTCACCATGGTAAAGA+AGG | - | chr1_1:9481299-9481318 | Msa0006550:intron | 40.0% | |
GTCATAATGGTAACAGAGGA+TGG | + | chr1_1:9481480-9481499 | None:intergenic | 40.0% | |
GATGGTCATAATGGTAACAG+AGG | + | chr1_1:9481484-9481503 | None:intergenic | 40.0% | |
CGATGAAAGGATGGTCATAA+TGG | + | chr1_1:9481493-9481512 | None:intergenic | 40.0% | |
!!! | CTTAGGCAGCTTTAGTTTTG+TGG | - | chr1_1:9481946-9481965 | Msa0006550:intron | 40.0% |
! | CATTTTGGATGAATGCAGTG+TGG | - | chr1_1:9481988-9482007 | Msa0006550:intron | 40.0% |
ATTTCGGCTAATTGAGAGTG+AGG | - | chr1_1:9482026-9482045 | Msa0006550:intron | 40.0% | |
! | ATGGTGATGTGTCCTATTCT+TGG | + | chr1_1:9482157-9482176 | None:intergenic | 40.0% |
CAAGTTATTACATCTTCGGG+TGG | - | chr1_1:9482358-9482377 | Msa0006550:intron | 40.0% | |
AACATTGGGATCATGGATGA+TGG | - | chr1_1:9482542-9482561 | Msa0006550:intron | 40.0% | |
ACATTGGGATCATGGATGAT+GGG | - | chr1_1:9482543-9482562 | Msa0006550:intron | 40.0% | |
AAAGTAGTGACTGCAACATG+AGG | + | chr1_1:9482638-9482657 | None:intergenic | 40.0% | |
TTCAGATAAGGTATGCTCGT+TGG | - | chr1_1:9482944-9482963 | Msa0006550:intron | 40.0% | |
GAGACAAGTAGTGAAACATG+TGG | + | chr1_1:9482989-9483008 | None:intergenic | 40.0% | |
TTGTCTCGGAGTCTAAAGAT+CGG | - | chr1_1:9483002-9483021 | Msa0006550:intron | 40.0% | |
AAAACGTACGAGAGAGACAG+AGG | + | chr1_1:9476291-9476310 | None:intergenic | 45.0% | |
CGCAAGAGAAGAAAGCTAAG+AGG | + | chr1_1:9476496-9476515 | None:intergenic | 45.0% | |
CTAGAGGCCTAAGGTTCTTA+CGG | - | chr1_1:9477169-9477188 | Msa0006550:intron | 45.0% | |
TCTTCCACCGTAAGAACCTT+AGG | + | chr1_1:9477179-9477198 | None:intergenic | 45.0% | |
AGTTAATGGTACTAGGGTGC+AGG | - | chr1_1:9477201-9477220 | Msa0006550:intron | 45.0% | |
TTATTAGGGATCTGGAGAGG+AGG | - | chr1_1:9477785-9477804 | Msa0006550:intron | 45.0% | |
AGCTGAGATGGAATTGTCGT+TGG | - | chr1_1:9477816-9477835 | Msa0006550:intron | 45.0% | |
!! | AAGGGTACCTCAAAGGACAA+CGG | - | chr1_1:9477848-9477867 | Msa0006550:intron | 45.0% |
! | AAACTGGTTCTTCTGACCGT+AGG | - | chr1_1:9477875-9477894 | Msa0006550:intron | 45.0% |
!! | CGTAGGCTTCTTGCTGTTAT+TGG | - | chr1_1:9477892-9477911 | Msa0006550:intron | 45.0% |
! | TGGATGCCTAGAGGTATGTT+TGG | - | chr1_1:9477967-9477986 | Msa0006550:intron | 45.0% |
! | AGGAGGTTTGAGACTTTGTC+TGG | - | chr1_1:9478055-9478074 | Msa0006550:intron | 45.0% |
TTGAGACTTTGTCTGGTGAG+AGG | - | chr1_1:9478062-9478081 | Msa0006550:intron | 45.0% | |
TGAGACTTTGTCTGGTGAGA+GGG | - | chr1_1:9478063-9478082 | Msa0006550:intron | 45.0% | |
! | AAGTAGAGGCAAATTGGCCT+TGG | - | chr1_1:9478097-9478116 | Msa0006550:intron | 45.0% |
!! | AAATTGGCCTTGGTGAGAGT+TGG | - | chr1_1:9478107-9478126 | Msa0006550:intron | 45.0% |
TCCTAATCGAGGTGATAGCT+TGG | - | chr1_1:9479362-9479381 | Msa0006550:intron | 45.0% | |
TCCAAGCTATCACCTCGATT+AGG | + | chr1_1:9479366-9479385 | None:intergenic | 45.0% | |
CACTCACACAACACAATCCA+AGG | + | chr1_1:9479482-9479501 | None:intergenic | 45.0% | |
CTTGGATTGTGTTGTGTGAG+TGG | - | chr1_1:9479480-9479499 | Msa0006550:CDS | 45.0% | |
ATTGTGTTGTGTGAGTGGAC+AGG | - | chr1_1:9479485-9479504 | Msa0006550:CDS | 45.0% | |
!! | GTTTTGATGGGATGGAGCAA+AGG | - | chr1_1:9479716-9479735 | Msa0006550:CDS | 45.0% |
ATCCAATATATGCGCCATCC+TGG | + | chr1_1:9480102-9480121 | None:intergenic | 45.0% | |
GAAGTCAGGAGACGTGATAT+CGG | - | chr1_1:9480126-9480145 | Msa0006550:intron | 45.0% | |
ATCCACAGATGTGGCAACTT+CGG | + | chr1_1:9480380-9480399 | None:intergenic | 45.0% | |
TGAAGTGACATCCACAGATG+TGG | + | chr1_1:9480389-9480408 | None:intergenic | 45.0% | |
CCAGGGAATGCAAATTTCCT+TGG | + | chr1_1:9480456-9480475 | None:intergenic | 45.0% | |
CCAAGGAAATTTGCATTCCC+TGG | - | chr1_1:9480453-9480472 | Msa0006550:intron | 45.0% | |
CACATTAACCTCAAAACGCC+AGG | + | chr1_1:9480474-9480493 | None:intergenic | 45.0% | |
TCCCCAAATTTCCACCAATC+AGG | + | chr1_1:9480730-9480749 | None:intergenic | 45.0% | |
TTGCAAACGAGTAGTGGCAA+TGG | + | chr1_1:9481526-9481545 | None:intergenic | 45.0% | |
AGTGCTTTGCAAACGAGTAG+TGG | + | chr1_1:9481532-9481551 | None:intergenic | 45.0% | |
! | ATAGATCGGTTGGTACGGTA+TGG | - | chr1_1:9481636-9481655 | Msa0006550:intron | 45.0% |
AGGTATTTCCGACATGCATC+TGG | - | chr1_1:9481839-9481858 | Msa0006550:intron | 45.0% | |
!!! | GCAGCTTTAGTTTTGTGGCA+TGG | - | chr1_1:9481951-9481970 | Msa0006550:intron | 45.0% |
!!! | GCTTTAGTTTTGTGGCATGG+CGG | - | chr1_1:9481954-9481973 | Msa0006550:intron | 45.0% |
! | GCGGCCTCAATTTAGCATTT+TGG | - | chr1_1:9481973-9481992 | Msa0006550:intron | 45.0% |
ATTGCGCTGTGCCATATTCT+TGG | - | chr1_1:9482071-9482090 | Msa0006550:intron | 45.0% | |
GATTCCAGAATTGAGAGAGC+TGG | - | chr1_1:9482223-9482242 | Msa0006550:intron | 45.0% | |
TACATCTTCGGGTGGATATG+AGG | - | chr1_1:9482366-9482385 | Msa0006550:intron | 45.0% | |
ACATCTTCGGGTGGATATGA+GGG | - | chr1_1:9482367-9482386 | Msa0006550:intron | 45.0% | |
TGCTGCAGTAGCATCAGTAA+AGG | - | chr1_1:9482600-9482619 | Msa0006550:intron | 45.0% | |
GTGACTGCAACATGAGGATT+GGG | + | chr1_1:9482632-9482651 | None:intergenic | 45.0% | |
AGTGACTGCAACATGAGGAT+TGG | + | chr1_1:9482633-9482652 | None:intergenic | 45.0% | |
!!! | TTTATATATTTTTTTAGATT+CGG | - | chr1_1:9477252-9477271 | Msa0006550:intron | 5.0% |
!! | TTATACTATTATAAAAAATT+TGG | - | chr1_1:9478330-9478349 | Msa0006550:intron | 5.0% |
!! | TATACTATTATAAAAAATTT+GGG | - | chr1_1:9478331-9478350 | Msa0006550:intron | 5.0% |
!! | ATAATAATAAAAAATTATCA+AGG | + | chr1_1:9478524-9478543 | None:intergenic | 5.0% |
!!! | ATTTTTTTAAAAAAAAACTA+CGG | + | chr1_1:9480351-9480370 | None:intergenic | 5.0% |
!! | AAAAATATAATATGATAAAT+TGG | + | chr1_1:9482775-9482794 | None:intergenic | 5.0% |
CAGGCAGTAACAGAGAGTTG+AGG | - | chr1_1:9476335-9476354 | Msa0006550:three_prime_UTR | 50.0% | |
CTTTCTTCTCTTGCGTCGCT+TGG | - | chr1_1:9476501-9476520 | Msa0006550:three_prime_UTR | 50.0% | |
GATCGGAATTAGGAACCTGC+CGG | + | chr1_1:9476537-9476556 | None:intergenic | 50.0% | |
TCTCAAGAAGAACTCCGCAC+AGG | - | chr1_1:9476712-9476731 | Msa0006550:intron | 50.0% | |
GAGGATTGTGGAAGCTGAGA+TGG | - | chr1_1:9477804-9477823 | Msa0006550:intron | 50.0% | |
! | TTTGAGGTACCCTTGGCTCT+TGG | + | chr1_1:9477842-9477861 | None:intergenic | 50.0% |
!! | AAGAGCCAAGGGTACCTCAA+AGG | - | chr1_1:9477841-9477860 | Msa0006550:intron | 50.0% |
!! | GTTGTCCTTTGAGGTACCCT+TGG | + | chr1_1:9477849-9477868 | None:intergenic | 50.0% |
TTTGCTGCCGTTGTCCTTTG+AGG | + | chr1_1:9477858-9477877 | None:intergenic | 50.0% | |
AAAGGACAACGGCAGCAAAC+TGG | - | chr1_1:9477859-9477878 | Msa0006550:intron | 50.0% | |
ACTTTGTCTGGTGAGAGGGA+GGG | - | chr1_1:9478067-9478086 | Msa0006550:intron | 50.0% | |
CCTAAGACCAACTCTCACCA+AGG | + | chr1_1:9478117-9478136 | None:intergenic | 50.0% | |
!! | CCTTGGTGAGAGTTGGTCTT+AGG | - | chr1_1:9478114-9478133 | Msa0006550:intron | 50.0% |
ATGCTTCTCGACTAGTACGC+TGG | - | chr1_1:9479076-9479095 | Msa0006550:intron | 50.0% | |
TGCTTCTCGACTAGTACGCT+GGG | - | chr1_1:9479077-9479096 | Msa0006550:intron | 50.0% | |
TTAGTACGGCGGTTCAGAAC+TGG | - | chr1_1:9479888-9479907 | Msa0006550:intron | 50.0% | |
TAGTACGGCGGTTCAGAACT+GGG | - | chr1_1:9479889-9479908 | Msa0006550:intron | 50.0% | |
GGCATGCCTCATATTTGCCA+AGG | - | chr1_1:9480436-9480455 | Msa0006550:intron | 50.0% | |
! | TTGCATTCCCTGGCGTTTTG+AGG | - | chr1_1:9480463-9480482 | Msa0006550:intron | 50.0% |
ACGAGTAGTGGCAATGGTGA+TGG | + | chr1_1:9481520-9481539 | None:intergenic | 50.0% | |
CAAGCGAACCAGATGCATGT+CGG | + | chr1_1:9481850-9481869 | None:intergenic | 50.0% | |
TCGGCTAATTGAGAGTGAGG+AGG | - | chr1_1:9482029-9482048 | Msa0006550:intron | 50.0% | |
CGGCTAATTGAGAGTGAGGA+GGG | - | chr1_1:9482030-9482049 | Msa0006550:intron | 50.0% | |
CTTGCCAGCTCTCTCAATTC+TGG | + | chr1_1:9482230-9482249 | None:intergenic | 50.0% | |
GAATTGAGAGAGCTGGCAAG+AGG | - | chr1_1:9482230-9482249 | Msa0006550:intron | 50.0% | |
!! | GGTATGCTCGTTGGCTTGAT+TGG | - | chr1_1:9482953-9482972 | Msa0006550:intron | 50.0% |
CGCTTCGACGACGATGTTGT+TGG | + | chr1_1:9476425-9476444 | None:intergenic | 55.0% | |
ACAACATCGTCGTCGAAGCG+AGG | - | chr1_1:9476425-9476444 | Msa0006550:three_prime_UTR | 55.0% | |
CGGATATGAAGCACGGACAG+CGG | - | chr1_1:9476875-9476894 | Msa0006550:intron | 55.0% | |
GAGGCCTAAGGTTCTTACGG+TGG | - | chr1_1:9477172-9477191 | Msa0006550:intron | 55.0% | |
GGATCTGGAGAGGAGGATTG+TGG | - | chr1_1:9477792-9477811 | Msa0006550:intron | 55.0% | |
TTGTCGTTGGCCAAGAGCCA+AGG | - | chr1_1:9477829-9477848 | Msa0006550:intron | 55.0% | |
TGTCGTTGGCCAAGAGCCAA+GGG | - | chr1_1:9477830-9477849 | Msa0006550:intron | 55.0% | |
AGAGGGTCTTGGATGCCTAG+AGG | - | chr1_1:9477958-9477977 | Msa0006550:intron | 55.0% | |
GACTTTGTCTGGTGAGAGGG+AGG | - | chr1_1:9478066-9478085 | Msa0006550:intron | 55.0% | |
GGGAGGGTAGGCTAAAGTAG+AGG | - | chr1_1:9478083-9478102 | Msa0006550:intron | 55.0% | |
GGCCAGGATGGCGCATATAT+TGG | - | chr1_1:9480097-9480116 | Msa0006550:intron | 55.0% | |
CTCCGAAGTTGCCACATCTG+TGG | - | chr1_1:9480375-9480394 | Msa0006550:intron | 55.0% | |
GATGGAGCCCGATGAAAGGA+TGG | + | chr1_1:9481502-9481521 | None:intergenic | 55.0% | |
!! | TGGTGATGGAGCCCGATGAA+AGG | + | chr1_1:9481506-9481525 | None:intergenic | 55.0% |
CGCTGTGCCATATTCTTGGC+TGG | - | chr1_1:9482075-9482094 | Msa0006550:intron | 55.0% | |
AGAGAGCTGGCAAGAGGTTC+AGG | - | chr1_1:9482236-9482255 | Msa0006550:intron | 55.0% | |
ACATCGTCGTCGAAGCGAGG+TGG | - | chr1_1:9476428-9476447 | Msa0006550:three_prime_UTR | 60.0% | |
TGTCTGGTGAGAGGGAGGGT+AGG | - | chr1_1:9478071-9478090 | Msa0006550:intron | 60.0% | |
GCTCTTCTTGACCGTCGACG+TGG | - | chr1_1:9480076-9480095 | Msa0006550:intron | 60.0% | |
TCGTCGTCGAAGCGAGGTGG+AGG | - | chr1_1:9476431-9476450 | Msa0006550:three_prime_UTR | 65.0% | |
TCGTCGAAGCGAGGTGGAGG+AGG | - | chr1_1:9476434-9476453 | Msa0006550:three_prime_UTR | 65.0% | |
!! | GTCGCTTGGCTCTACGTCGC+CGG | - | chr1_1:9476515-9476534 | Msa0006550:three_prime_UTR | 65.0% |
TCTTGACCGTCGACGTGGCC+AGG | - | chr1_1:9480081-9480100 | Msa0006550:intron | 65.0% | |
!! | CTTGGCTCTACGTCGCCGGC+AGG | - | chr1_1:9476519-9476538 | Msa0006550:three_prime_UTR | 70.0% |
GACCGTCGACGTGGCCAGGA+TGG | - | chr1_1:9480085-9480104 | Msa0006550:intron | 70.0% | |
CGCCATCCTGGCCACGTCGA+CGG | + | chr1_1:9480090-9480109 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 9476237 | 9483388 | 9476237 | ID=Msa0006550;Name=Msa0006550 |
chr1_1 | mRNA | 9476237 | 9483388 | 9476237 | ID=Msa0006550-mRNA-1;Parent=Msa0006550;Name=Msa0006550-mRNA-1;_AED=0.16;_eAED=0.16;_QI=173|1|1|1|0.81|0.83|12|417|345 |
chr1_1 | exon | 9476237 | 9476676 | 9476237 | ID=Msa0006550-mRNA-1:exon:3396;Parent=Msa0006550-mRNA-1 |
chr1_1 | exon | 9477004 | 9477116 | 9477004 | ID=Msa0006550-mRNA-1:exon:3395;Parent=Msa0006550-mRNA-1 |
chr1_1 | exon | 9477713 | 9477784 | 9477713 | ID=Msa0006550-mRNA-1:exon:3394;Parent=Msa0006550-mRNA-1 |
chr1_1 | exon | 9478867 | 9478917 | 9478867 | ID=Msa0006550-mRNA-1:exon:3393;Parent=Msa0006550-mRNA-1 |
chr1_1 | exon | 9479473 | 9479560 | 9479473 | ID=Msa0006550-mRNA-1:exon:3392;Parent=Msa0006550-mRNA-1 |
chr1_1 | exon | 9479666 | 9479789 | 9479666 | ID=Msa0006550-mRNA-1:exon:3391;Parent=Msa0006550-mRNA-1 |
chr1_1 | exon | 9480191 | 9480263 | 9480191 | ID=Msa0006550-mRNA-1:exon:3390;Parent=Msa0006550-mRNA-1 |
chr1_1 | exon | 9480381 | 9480441 | 9480381 | ID=Msa0006550-mRNA-1:exon:3389;Parent=Msa0006550-mRNA-1 |
chr1_1 | exon | 9481646 | 9481833 | 9481646 | ID=Msa0006550-mRNA-1:exon:3388;Parent=Msa0006550-mRNA-1 |
chr1_1 | exon | 9482403 | 9482452 | 9482403 | ID=Msa0006550-mRNA-1:exon:3387;Parent=Msa0006550-mRNA-1 |
chr1_1 | exon | 9482892 | 9482955 | 9482892 | ID=Msa0006550-mRNA-1:exon:3386;Parent=Msa0006550-mRNA-1 |
chr1_1 | exon | 9483085 | 9483388 | 9483085 | ID=Msa0006550-mRNA-1:exon:3385;Parent=Msa0006550-mRNA-1 |
chr1_1 | five_prime_UTR | 9483216 | 9483388 | 9483216 | ID=Msa0006550-mRNA-1:five_prime_utr;Parent=Msa0006550-mRNA-1 |
chr1_1 | CDS | 9483085 | 9483215 | 9483085 | ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1 |
chr1_1 | CDS | 9482892 | 9482955 | 9482892 | ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1 |
chr1_1 | CDS | 9482403 | 9482452 | 9482403 | ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1 |
chr1_1 | CDS | 9481646 | 9481833 | 9481646 | ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1 |
chr1_1 | CDS | 9480381 | 9480441 | 9480381 | ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1 |
chr1_1 | CDS | 9480191 | 9480263 | 9480191 | ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1 |
chr1_1 | CDS | 9479666 | 9479789 | 9479666 | ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1 |
chr1_1 | CDS | 9479473 | 9479560 | 9479473 | ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1 |
chr1_1 | CDS | 9478867 | 9478917 | 9478867 | ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1 |
chr1_1 | CDS | 9477713 | 9477784 | 9477713 | ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1 |
chr1_1 | CDS | 9477004 | 9477116 | 9477004 | ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1 |
chr1_1 | CDS | 9476654 | 9476676 | 9476654 | ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1 |
chr1_1 | three_prime_UTR | 9476237 | 9476653 | 9476237 | ID=Msa0006550-mRNA-1:three_prime_utr;Parent=Msa0006550-mRNA-1 |
Gene Sequence |
Protein sequence |