AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006550 MtrunA17_Chr1g0149521 99.422 346 1 1 1 345 1 346 0.0 699
Msa0006550 MtrunA17_Chr3g0126221 47.040 321 167 3 26 343 20 340 1.27e-111 328
Msa0006550 MtrunA17_Chr5g0396961 46.250 320 169 2 27 343 21 340 2.50e-107 317
Msa0006550 MtrunA17_Chr3g0115251 38.602 329 179 5 29 335 16 343 3.60e-73 231
Msa0006550 MtrunA17_Chr4g0024631 43.511 262 137 5 84 335 96 356 1.44e-67 218
Msa0006550 MtrunA17_Chr2g0322591 44.487 263 135 5 83 335 91 352 2.83e-64 209
Msa0006550 MtrunA17_Chr4g0004991 43.348 233 128 4 106 335 12 243 1.20e-63 204
Msa0006550 MtrunA17_Chr4g0017871 43.878 196 107 3 142 335 4 198 2.51e-55 181
Msa0006550 MtrunA17_Chr8g0360581 28.280 343 201 10 4 341 2 304 1.21e-37 137
Msa0006550 MtrunA17_Chr2g0316241 35.043 234 137 8 112 337 71 297 1.88e-35 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006550 AT4G32120.1 77.457 346 76 2 1 345 1 345 0.0 557
Msa0006550 AT2G25300.1 74.352 347 86 2 1 345 1 346 0.0 535
Msa0006550 AT2G25300.2 78.067 269 58 1 77 345 1 268 3.33e-161 451
Msa0006550 AT5G53340.1 44.062 320 176 3 27 343 17 336 3.96e-99 296
Msa0006550 AT5G53340.2 44.062 320 175 4 27 343 17 335 4.10e-97 291
Msa0006550 AT1G05170.1 37.989 358 188 7 9 335 2 356 5.40e-75 236
Msa0006550 AT1G05170.2 37.989 358 188 7 9 335 2 356 4.74e-74 234
Msa0006550 AT1G32930.1 47.059 221 114 3 117 335 129 348 1.88e-69 223
Msa0006550 AT1G77810.2 46.847 222 115 3 116 335 113 333 6.95e-69 221
Msa0006550 AT1G77810.1 46.847 222 115 3 116 335 116 336 1.06e-68 220
Msa0006550 AT2G32430.1 38.571 350 180 8 18 335 12 358 2.03e-67 218
Msa0006550 AT1G33430.1 42.692 260 142 4 82 335 84 342 1.73e-65 212
Msa0006550 AT1G11730.1 42.188 256 143 5 84 335 79 333 7.66e-65 210
Msa0006550 AT1G33430.2 41.418 268 142 5 82 335 84 350 1.77e-62 204
Msa0006550 AT4G26940.1 39.403 335 172 11 28 335 27 357 2.65e-62 204
Msa0006550 AT1G22015.1 42.920 226 126 3 112 335 120 344 1.75e-57 191
Msa0006550 AT1G33430.3 43.612 227 121 4 80 300 82 307 1.10e-54 181
Msa0006550 AT1G53290.1 33.198 247 148 8 100 341 73 307 6.25e-36 133
Msa0006550 AT2G26100.2 36.404 228 134 7 116 337 108 330 1.07e-35 133
Msa0006550 AT2G26100.1 36.404 228 134 7 116 337 108 330 1.10e-35 133
Msa0006550 AT3G14960.1 33.333 228 141 7 116 337 82 304 3.76e-35 131
Msa0006550 AT4G26940.2 37.023 262 135 10 28 263 27 284 3.58e-33 125

Find 98 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTAAAATATGAAAATTT+AGG 0.118819 1_1:+9476263 None:intergenic
TGTTATACTTTCGAAGAATT+TGG 0.175766 1_1:-9477735 Msa0006550:CDS
CGTAGGCTTCTTGCTGTTAT+TGG 0.197350 1_1:-9481711 Msa0006550:CDS
GAACCTGATTGGTGGAAATT+TGG 0.211524 1_1:-9478879 Msa0006550:CDS
AACCTGATTGGTGGAAATTT+GGG 0.317577 1_1:-9478878 Msa0006550:CDS
TGGAGATACGGGTTGATAAA+AGG 0.317704 1_1:+9476227 None:intergenic
AGATCATTGTAGGTATAAAA+AGG 0.319657 1_1:+9476504 None:intergenic
GGCCAGGATGGCGCATATAT+TGG 0.322926 1_1:-9479506 Msa0006550:CDS
ATTGGAGTATATACTGGATT+TGG 0.331812 1_1:-9481693 Msa0006550:CDS
TACGGTGGAAGATAAGTTAA+TGG 0.338815 1_1:-9482416 Msa0006550:CDS
CACAGTACATTAACATAAAC+AGG 0.339769 1_1:-9477712 Msa0006550:intron
TTAGTACGGCGGTTCAGAAC+TGG 0.349681 1_1:-9479715 Msa0006550:CDS
GACTAAAATATGAAAATTTA+GGG 0.352307 1_1:+9476264 None:intergenic
GCTGTTATTGGAGTATATAC+TGG 0.356789 1_1:-9481699 Msa0006550:CDS
TCCCCAAATTTCCACCAATC+AGG 0.366321 1_1:+9478876 None:intergenic
TTTGCTGCCGTTGTCCTTTG+AGG 0.377114 1_1:+9481748 None:intergenic
GGTATGCTCGTTGGCTTGAT+TGG 0.377919 1_1:-9476650 Msa0006550:exon
CTTTCTTCTCTTGCGTCGCT+TGG 0.381177 1_1:-9483102 Msa0006550:CDS
TTTGAGGTACCCTTGGCTCT+TGG 0.386477 1_1:+9481764 None:intergenic
TATGTTGTTTATTAGGGATC+TGG 0.389785 1_1:-9481826 Msa0006550:intron
AAGAATGAATAGATCATTGT+AGG 0.399103 1_1:+9476494 None:intergenic
GGATTTGCATAAATATCAAT+TGG 0.403058 1_1:-9483247 Msa0006550:five_prime_UTR
CAAAGCTCTCAATGTTGTAT+TGG 0.404506 1_1:+9476545 None:intergenic
GAGGATTGTGGAAGCTGAGA+TGG 0.418121 1_1:-9481799 Msa0006550:CDS
AGGTATTTCCGACATGCATC+TGG 0.427162 1_1:-9477764 Msa0006550:CDS
TGGAAGTGCTATATGATCAT+AGG 0.436840 1_1:-9476454 Msa0006550:three_prime_UTR
TCTTGACCGTCGACGTGGCC+AGG 0.439723 1_1:-9479522 Msa0006550:CDS
GACAGTATTGACATTGATCT+TGG 0.440622 1_1:-9479665 Msa0006550:intron
CGCTTCGACGACGATGTTGT+TGG 0.440629 1_1:+9483181 None:intergenic
AAAGGACAACGGCAGCAAAC+TGG 0.445483 1_1:-9481744 Msa0006550:CDS
GCCTATGATGATACAACATT+GGG 0.446536 1_1:-9477075 Msa0006550:CDS
TTTGTTAATATCACTGTAGC+AGG 0.454772 1_1:-9483287 Msa0006550:five_prime_UTR
CTAGAGGCCTAAGGTTCTTA+CGG 0.454953 1_1:-9482434 Msa0006550:intron
GAAGATAAGTTAATGGTACT+AGG 0.459097 1_1:-9482409 Msa0006550:CDS
TCCCAATGTTGTATCATCAT+AGG 0.460275 1_1:+9477074 None:intergenic
GTTGTCCTTTGAGGTACCCT+TGG 0.464046 1_1:+9481757 None:intergenic
GGATCTGGAGAGGAGGATTG+TGG 0.470848 1_1:-9481811 Msa0006550:CDS
ATGATACAACATTGGGATCA+TGG 0.480900 1_1:-9477068 Msa0006550:CDS
CTCAAAAGAAATGTATTCAG+AGG 0.485779 1_1:-9481663 Msa0006550:CDS
AACATTGGGATCATGGATGA+TGG 0.485812 1_1:-9477061 Msa0006550:CDS
TAGTACGGCGGTTCAGAACT+GGG 0.489724 1_1:-9479714 Msa0006550:CDS
CTTGGCTCTACGTCGCCGGC+AGG 0.493176 1_1:-9483084 Msa0006550:intron
TGTCGTCTATATATGTTGAT+TGG 0.496050 1_1:+9477034 None:intergenic
AAGAAAGCTAAGAGGAGAGA+AGG 0.498995 1_1:+9483118 None:intergenic
TCCAAGCTATCACCTCGATT+AGG 0.500386 1_1:+9480240 None:intergenic
TTCAGATAAGGTATGCTCGT+TGG 0.505587 1_1:-9476659 Msa0006550:intron
TATATTGGATGCATGAAGTC+AGG 0.508194 1_1:-9479491 Msa0006550:CDS
GAAGTCAGGAGACGTGATAT+CGG 0.509651 1_1:-9479477 Msa0006550:CDS
TCCTAATCGAGGTGATAGCT+TGG 0.510536 1_1:-9480241 Msa0006550:CDS
ATCCAATATATGCGCCATCC+TGG 0.510550 1_1:+9479504 None:intergenic
GAAATGTATTCAGAGGGTCT+TGG 0.520604 1_1:-9481656 Msa0006550:CDS
TCGTCGAAGCGAGGTGGAGG+AGG 0.520744 1_1:-9483169 Msa0006550:CDS
CGCAAGAGAAGAAAGCTAAG+AGG 0.524066 1_1:+9483110 None:intergenic
GTCGCTTGGCTCTACGTCGC+CGG 0.534428 1_1:-9483088 Msa0006550:CDS
TGCCTATGATGATACAACAT+TGG 0.539252 1_1:-9477076 Msa0006550:CDS
TCTTCCACCGTAAGAACCTT+AGG 0.540041 1_1:+9482427 None:intergenic
TCGTCGTCGAAGCGAGGTGG+AGG 0.540993 1_1:-9483172 Msa0006550:CDS
AGTTAATGGTACTAGGGTGC+AGG 0.541667 1_1:-9482402 Msa0006550:intron
AGCTTTGGTATGAACCTGAT+TGG 0.546372 1_1:-9478890 Msa0006550:CDS
GACCGTCGACGTGGCCAGGA+TGG 0.547999 1_1:-9479518 Msa0006550:CDS
ACATGTTTCACTACTTGTCT+CGG 0.550864 1_1:-9476615 Msa0006550:three_prime_UTR
CTTGGATCGCAATATTAATG+AGG 0.558938 1_1:-9480223 Msa0006550:CDS
TTGTCGTTGGCCAAGAGCCA+AGG 0.565453 1_1:-9481774 Msa0006550:CDS
CTGATGATCAAATATTGAAG+AGG 0.566279 1_1:-9476395 Msa0006550:three_prime_UTR
CGCCATCCTGGCCACGTCGA+CGG 0.574272 1_1:+9479516 None:intergenic
AAAACGTACGAGAGAGACAG+AGG 0.580125 1_1:+9483315 None:intergenic
AAATCAATCAAACTCAGCGA+TGG 0.580995 1_1:-9483212 Msa0006550:exon
TGTTGTATCATCATAGGCAT+AGG 0.581817 1_1:+9477080 None:intergenic
AAGATAAGTTAATGGTACTA+GGG 0.581844 1_1:-9482408 Msa0006550:CDS
AAACTGGTTCTTCTGACCGT+AGG 0.585093 1_1:-9481728 Msa0006550:CDS
TGCTGCAGTAGCATCAGTAA+AGG 0.586809 1_1:-9477003 Msa0006550:intron
TCTCAAGAAGAACTCCGCAC+AGG 0.588568 1_1:-9482891 Msa0006550:intron
ACATTGGGATCATGGATGAT+GGG 0.589197 1_1:-9477060 Msa0006550:CDS
TTATTAGGGATCTGGAGAGG+AGG 0.593428 1_1:-9481818 Msa0006550:intron
TCAAAAGAAATGTATTCAGA+GGG 0.598744 1_1:-9481662 Msa0006550:CDS
CAACATATATAGACGACAGT+CGG 0.602712 1_1:-9477029 Msa0006550:CDS
AAGAGCCAAGGGTACCTCAA+AGG 0.604992 1_1:-9481762 Msa0006550:CDS
TGTTTATTAGGGATCTGGAG+AGG 0.609482 1_1:-9481821 Msa0006550:intron
AGCTGAGATGGAATTGTCGT+TGG 0.610971 1_1:-9481787 Msa0006550:CDS
TAAAACAATAATAACAGAGG+AGG 0.624271 1_1:+9476431 None:intergenic
TGTCGTTGGCCAAGAGCCAA+GGG 0.624416 1_1:-9481773 Msa0006550:CDS
CAATAACAGCAAGAAGCCTA+CGG 0.624587 1_1:+9481712 None:intergenic
GTTATTGACAGTCCTAATCG+AGG 0.631555 1_1:-9480252 Msa0006550:intron
TTTGGTATGAACCTGATTGG+TGG 0.633541 1_1:-9478887 Msa0006550:CDS
GCTCTTCTTGACCGTCGACG+TGG 0.635544 1_1:-9479527 Msa0006550:CDS
ACCTGATTGGTGGAAATTTG+GGG 0.648422 1_1:-9478877 Msa0006550:CDS
ACAACATCGTCGTCGAAGCG+AGG 0.650469 1_1:-9483178 Msa0006550:CDS
TTGTCTCGGAGTCTAAAGAT+CGG 0.651810 1_1:-9476601 Msa0006550:three_prime_UTR
ACATCGTCGTCGAAGCGAGG+TGG 0.657917 1_1:-9483175 Msa0006550:CDS
CAAGCGAACCAGATGCATGT+CGG 0.657962 1_1:+9477756 None:intergenic
AAAACTTGAAGAAAGAGGAG+TGG 0.662821 1_1:-9480406 Msa0006550:CDS
GTATAAAACAATAATAACAG+AGG 0.664545 1_1:+9476428 None:intergenic
GAGGCCTAAGGTTCTTACGG+TGG 0.679944 1_1:-9482431 Msa0006550:CDS
AGAGGGTCTTGGATGCCTAG+AGG 0.683490 1_1:-9481645 Msa0006550:intron
GAGACAAGTAGTGAAACATG+TGG 0.694102 1_1:+9476617 None:intergenic
CAGGCAGTAACAGAGAGTTG+AGG 0.699095 1_1:-9483268 Msa0006550:five_prime_UTR
AAGGGTACCTCAAAGGACAA+CGG 0.709836 1_1:-9481755 Msa0006550:CDS
TTGGTAATAGGAAAGTCACG+AGG 0.758498 1_1:-9479777 Msa0006550:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGATTTTATTTATTTTGT+AGG + chr1_1:9476256-9476275 None:intergenic 10.0%
!!! TTATTATTTTGTTCATATTT+AGG - chr1_1:9478537-9478556 Msa0006550:intron 10.0%
!!! TCAAAAAAAAAAAAAAGTAT+TGG - chr1_1:9478844-9478863 Msa0006550:intron 10.0%
!!! TTTCAATTTAAGATATATTA+AGG + chr1_1:9480847-9480866 None:intergenic 10.0%
!!! ATTTTATTTATTTTGTAGGA+AGG + chr1_1:9476252-9476271 None:intergenic 15.0%
!! AAAATTAAAACTGAAAAAAG+AGG + chr1_1:9476748-9476767 None:intergenic 15.0%
!! TCTTAATTGGAATTTAAATT+TGG - chr1_1:9478239-9478258 Msa0006550:intron 15.0%
!! CTTAATTGGAATTTAAATTT+GGG - chr1_1:9478240-9478259 Msa0006550:intron 15.0%
!!! CATTTATACTTTTATTTTGA+TGG - chr1_1:9478306-9478325 Msa0006550:intron 15.0%
!!! GTTTTTAATTTATACTTTGA+TGG - chr1_1:9478382-9478401 Msa0006550:intron 15.0%
!! AAATATTAAAACTTATCCTA+GGG + chr1_1:9478450-9478469 None:intergenic 15.0%
!! AAAATATTAAAACTTATCCT+AGG + chr1_1:9478451-9478470 None:intergenic 15.0%
!!! TTCAAACAAAAAAAAAGTAT+TGG - chr1_1:9478624-9478643 Msa0006550:intron 15.0%
!! GAAAATATGTATTAATATCA+TGG + chr1_1:9479275-9479294 None:intergenic 15.0%
!!! ACTGAATTGTTTTTTAAATT+TGG - chr1_1:9479512-9479531 Msa0006550:CDS 15.0%
!! AGAAATATAATTGTAATTCA+GGG + chr1_1:9480563-9480582 None:intergenic 15.0%
!! AAGAAATATAATTGTAATTC+AGG + chr1_1:9480564-9480583 None:intergenic 15.0%
!! TAAGTACTAATAACAAAAAT+TGG - chr1_1:9480952-9480971 Msa0006550:intron 15.0%
!!! GTAGTTTTTTTTTTTACTTT+TGG - chr1_1:9481395-9481414 Msa0006550:intron 15.0%
!!! TATAATTTTTTATCAGATTG+TGG - chr1_1:9481442-9481461 Msa0006550:intron 15.0%
!!! ATAATTTTTTATCAGATTGT+GGG - chr1_1:9481443-9481462 Msa0006550:intron 15.0%
!!! TGTTCTTTTAATATATAGAT+CGG - chr1_1:9481622-9481641 Msa0006550:intron 15.0%
!! ATACTACTAAAAAAGTAAAA+AGG + chr1_1:9481727-9481746 None:intergenic 15.0%
!!! TTTTTACTTTTTTAGTAGTA+TGG - chr1_1:9481726-9481745 Msa0006550:CDS 15.0%
!! AAAAATAAAACAACTCATTA+TGG + chr1_1:9481756-9481775 None:intergenic 15.0%
!!! AGTGTTGATTTTTTTTTTTT+TGG - chr1_1:9481779-9481798 Msa0006550:CDS 15.0%
!!! TGATTTTTTTTTTTTTGGAA+TGG - chr1_1:9481784-9481803 Msa0006550:CDS 15.0%
!! GACTAAAATATGAAAATTTA+GGG + chr1_1:9483342-9483361 None:intergenic 15.0%
!!! TTTTTTATCTCAAACACTAA+CGG - chr1_1:9476620-9476639 Msa0006550:three_prime_UTR 20.0%
!!! TTGAAATTCATGTTGTTTTT+CGG - chr1_1:9477087-9477106 Msa0006550:CDS 20.0%
!!! GATATTTAGTTTGATTTTGT+CGG - chr1_1:9477294-9477313 Msa0006550:intron 20.0%
!! TTATTGACCAAACAATAAAT+AGG - chr1_1:9477617-9477636 Msa0006550:intron 20.0%
!! ATTTGTTCCTATTTATTGTT+TGG + chr1_1:9477627-9477646 None:intergenic 20.0%
!! TGCAAATACAACAATTATAA+AGG - chr1_1:9477653-9477672 Msa0006550:intron 20.0%
!!! TTTTATGATGTTGTTTTGTA+AGG - chr1_1:9477744-9477763 Msa0006550:CDS 20.0%
!!! TTTATGATGTTGTTTTGTAA+GGG - chr1_1:9477745-9477764 Msa0006550:CDS 20.0%
!!! TTATGTGTATGTTGTTTATT+AGG - chr1_1:9477770-9477789 Msa0006550:intron 20.0%
!!! TATGTGTATGTTGTTTATTA+GGG - chr1_1:9477771-9477790 Msa0006550:intron 20.0%
!! AAAACTAGAAATCATGAAAA+TGG + chr1_1:9478415-9478434 None:intergenic 20.0%
!!! ATTTTATCTAGCAAATGTTA+AGG - chr1_1:9478466-9478485 Msa0006550:intron 20.0%
!!! TAACTTTTTCATAATAGTAC+TGG - chr1_1:9478588-9478607 Msa0006550:intron 20.0%
!!! TAATTGAGTTGTTCATATTT+AGG - chr1_1:9478756-9478775 Msa0006550:intron 20.0%
!! ACTGTCAATAACAAATTTAA+AGG + chr1_1:9479343-9479362 None:intergenic 20.0%
!!! ATAATGCAAGTTTTAAATGA+GGG + chr1_1:9479618-9479637 None:intergenic 20.0%
!!! AATAATGCAAGTTTTAAATG+AGG + chr1_1:9479619-9479638 None:intergenic 20.0%
!!! TTCTGAAATATTTCAATCTT+AGG - chr1_1:9479638-9479657 Msa0006550:intron 20.0%
!!! TCTGAAATATTTCAATCTTA+GGG - chr1_1:9479639-9479658 Msa0006550:intron 20.0%
!!! TGGTTAAATTATTCTTTTTC+TGG - chr1_1:9479683-9479702 Msa0006550:CDS 20.0%
!!! TTAAATTATTCTTTTTCTGG+TGG - chr1_1:9479686-9479705 Msa0006550:CDS 20.0%
!!! AAGAAGATTTTTGCTTTTTT+AGG + chr1_1:9479869-9479888 None:intergenic 20.0%
!! AATAATGAATGCATGTATTT+AGG - chr1_1:9479973-9479992 Msa0006550:intron 20.0%
!! TATTTATGATAAAAGATGTG+TGG - chr1_1:9480187-9480206 Msa0006550:intron 20.0%
!! AATAATTCTGAACACAAAAA+TGG + chr1_1:9480327-9480346 None:intergenic 20.0%
!!! TGATTTTCAATTGAGATTTT+TGG - chr1_1:9480652-9480671 Msa0006550:intron 20.0%
!! AACAACAAAGAATAATGTAT+TGG + chr1_1:9480870-9480889 None:intergenic 20.0%
!! AATGGGAAATTAATAATCTT+TGG - chr1_1:9480904-9480923 Msa0006550:intron 20.0%
!! TACTAATAACAAAAATTGGA+GGG - chr1_1:9480956-9480975 Msa0006550:intron 20.0%
!! GTGTTTAAACAGTATAAATT+TGG + chr1_1:9481044-9481063 None:intergenic 20.0%
!! CAATATGATTGAAACAATTT+AGG + chr1_1:9481083-9481102 None:intergenic 20.0%
!! AAAAAAAAAACTACAAGCAA+TGG + chr1_1:9481389-9481408 None:intergenic 20.0%
!! CATACTCATATATAAGTTAA+GGG + chr1_1:9481596-9481615 None:intergenic 20.0%
!! ACATACTCATATATAAGTTA+AGG + chr1_1:9481597-9481616 None:intergenic 20.0%
!!! TTTATTGCTTTATTGTCTTT+AGG - chr1_1:9481819-9481838 Msa0006550:intron 20.0%
!!! ACTTTTAATAGCATGTTTTA+TGG + chr1_1:9482176-9482195 None:intergenic 20.0%
!! GACGTATGTATAATATAAAA+AGG + chr1_1:9482324-9482343 None:intergenic 20.0%
!! GTATAAAACAATAATAACAG+AGG + chr1_1:9483178-9483197 None:intergenic 20.0%
!!! AAAAAATTCAAAGAAAGCAT+AGG - chr1_1:9483231-9483250 Msa0006550:five_prime_UTR 20.0%
!!! AAAAATATAATTTGCTGTCT+GGG + chr1_1:9483291-9483310 None:intergenic 20.0%
!!! ATTTTTCCTTTTTTCTTTTG+CGG - chr1_1:9483305-9483324 Msa0006550:five_prime_UTR 20.0%
!! GGACTAAAATATGAAAATTT+AGG + chr1_1:9483343-9483362 None:intergenic 20.0%
!!! ATAAAAGGCAATTTTTATCA+GGG + chr1_1:9483364-9483383 None:intergenic 20.0%
!!! TTATTTATTTTGTAGGAAGG+TGG + chr1_1:9476249-9476268 None:intergenic 25.0%
! GGATTTGCATAAATATCAAT+TGG - chr1_1:9476356-9476375 Msa0006550:three_prime_UTR 25.0%
! GAATTGAAATGAATGAGAAT+CGG + chr1_1:9476559-9476578 None:intergenic 25.0%
! ATCATGATGAAAAATGTGTT+AGG - chr1_1:9476648-9476667 Msa0006550:exon 25.0%
! ATGAAAAATGTGTTAGGTTA+TGG - chr1_1:9476654-9476673 Msa0006550:CDS 25.0%
! TTAAAGTTCATTTCTGTTTG+AGG - chr1_1:9476766-9476785 Msa0006550:intron 25.0%
!!! GATTTATTTTTTGTTGCTAG+AGG - chr1_1:9477153-9477172 Msa0006550:intron 25.0%
! AAGATAAGTTAATGGTACTA+GGG - chr1_1:9477195-9477214 Msa0006550:intron 25.0%
! TTAGTTATTTACCATGAGAT+AGG + chr1_1:9477592-9477611 None:intergenic 25.0%
! TATCTCATGGTAAATAACTA+AGG - chr1_1:9477591-9477610 Msa0006550:intron 25.0%
! ATCTCATGGTAAATAACTAA+GGG - chr1_1:9477592-9477611 Msa0006550:intron 25.0%
! TCAAAAGAAATGTATTCAGA+GGG - chr1_1:9477941-9477960 Msa0006550:intron 25.0%
! TCTACTGATATCAATTATGT+TGG - chr1_1:9478159-9478178 Msa0006550:intron 25.0%
!! CTCTTAATTTGAAATTGCAT+GGG - chr1_1:9478276-9478295 Msa0006550:intron 25.0%
! ACTCAATTAAATTTCCTTCT+CGG + chr1_1:9478745-9478764 None:intergenic 25.0%
!!! CAACTTTTTCATAATAGTAC+CGG - chr1_1:9478807-9478826 Msa0006550:intron 25.0%
! TTTGAAAAATCTCACTAAAC+CGG + chr1_1:9478610-9478629 None:intergenic 25.0%
!!! TTTTTTGTGTTTCTGTAAGA+AGG - chr1_1:9478950-9478969 Msa0006550:intron 25.0%
!! ATTTGCATGGTTATCTTTTT+AGG - chr1_1:9479119-9479138 Msa0006550:intron 25.0%
!!! TCTTTCTTCAAGTTTTTTCA+AGG + chr1_1:9479193-9479212 None:intergenic 25.0%
! TTGAAAAAACTTGAAGAAAG+AGG - chr1_1:9479192-9479211 Msa0006550:intron 25.0%
! ATCATAGATGCTTAACATTT+AGG - chr1_1:9479538-9479557 Msa0006550:CDS 25.0%
! TCATAGATGCTTAACATTTA+GGG - chr1_1:9479539-9479558 Msa0006550:CDS 25.0%
!! ATTTAGGGTATTAACAGTTT+AGG - chr1_1:9479554-9479573 Msa0006550:intron 25.0%
!! TTTAGGGTATTAACAGTTTA+GGG - chr1_1:9479555-9479574 Msa0006550:intron 25.0%
!!! TAATGCAAGTTTTAAATGAG+GGG + chr1_1:9479617-9479636 None:intergenic 25.0%
!!! AAAAGCATTGATAAACACAA+TGG + chr1_1:9479753-9479772 None:intergenic 25.0%
! AGCAAAAATCTTCTTTAGTA+CGG - chr1_1:9479874-9479893 Msa0006550:intron 25.0%
! AGCTTAAAGAAAAATCTTCT+GGG + chr1_1:9480247-9480266 None:intergenic 25.0%
! AGATAATTAACACATTCGAT+GGG + chr1_1:9480413-9480432 None:intergenic 25.0%
! AAGATAATTAACACATTCGA+TGG + chr1_1:9480414-9480433 None:intergenic 25.0%
! CGAATGTGTTAATTATCTTT+AGG - chr1_1:9480415-9480434 Msa0006550:CDS 25.0%
!! CAATTCTTTTCTCATCTAAA+GGG + chr1_1:9480774-9480793 None:intergenic 25.0%
!! TGTTTTATCATTGAACTGAA+TGG - chr1_1:9480886-9480905 Msa0006550:intron 25.0%
!! GTTTTATCATTGAACTGAAT+GGG - chr1_1:9480887-9480906 Msa0006550:intron 25.0%
!!! TTTGTTATTAGTACTTAGCA+CGG + chr1_1:9480949-9480968 None:intergenic 25.0%
! GTACTAATAACAAAAATTGG+AGG - chr1_1:9480955-9480974 Msa0006550:intron 25.0%
! GTTACAAATAGGAAAAATCT+TGG + chr1_1:9481364-9481383 None:intergenic 25.0%
!! CTTTTAATATATAGATCGGT+TGG - chr1_1:9481626-9481645 Msa0006550:intron 25.0%
! TATGGTATTATAACTCCTAA+TGG - chr1_1:9481654-9481673 Msa0006550:CDS 25.0%
! TGTTATACTTTCGAAGAATT+TGG - chr1_1:9481868-9481887 Msa0006550:intron 25.0%
! ACAATCTTTGCAATTAACTT+AGG - chr1_1:9481929-9481948 Msa0006550:intron 25.0%
!!! GATACACTACATTTTGTTTT+TGG + chr1_1:9482495-9482514 None:intergenic 25.0%
!! AAGTTCAATTTTGTGAACTT+AGG + chr1_1:9482902-9482921 None:intergenic 25.0%
! GGTATAAAAAGGAATTCTAT+TGG + chr1_1:9483091-9483110 None:intergenic 25.0%
! AGATCATTGTAGGTATAAAA+AGG + chr1_1:9483102-9483121 None:intergenic 25.0%
! AAGAATGAATAGATCATTGT+AGG + chr1_1:9483112-9483131 None:intergenic 25.0%
!! CTTTTAGATACACTACATTA+TGG - chr1_1:9483129-9483148 Msa0006550:CDS 25.0%
! TAAAACAATAATAACAGAGG+AGG + chr1_1:9483175-9483194 None:intergenic 25.0%
!!! GAAAAATATAATTTGCTGTC+TGG + chr1_1:9483292-9483311 None:intergenic 25.0%
!! GATAAAAGGCAATTTTTATC+AGG + chr1_1:9483365-9483384 None:intergenic 25.0%
TTTGTTAATATCACTGTAGC+AGG - chr1_1:9476316-9476335 Msa0006550:three_prime_UTR 30.0%
! CCATATTGTTTTCACTGTTT+CGG - chr1_1:9476855-9476874 Msa0006550:intron 30.0%
GAAGATAAGTTAATGGTACT+AGG - chr1_1:9477194-9477213 Msa0006550:intron 30.0%
TATTTGATATTTGACAACGC+TGG - chr1_1:9477720-9477739 Msa0006550:CDS 30.0%
! TATGTTGTTTATTAGGGATC+TGG - chr1_1:9477777-9477796 Msa0006550:intron 30.0%
ATTGGAGTATATACTGGATT+TGG - chr1_1:9477910-9477929 Msa0006550:intron 30.0%
CTCAAAAGAAATGTATTCAG+AGG - chr1_1:9477940-9477959 Msa0006550:intron 30.0%
CCATGCAATTTCAAATTAAG+AGG + chr1_1:9478278-9478297 None:intergenic 30.0%
! CCTCTTAATTTGAAATTGCA+TGG - chr1_1:9478275-9478294 Msa0006550:intron 30.0%
!! TTTTCTATCTTTGTTTCCCT+AGG - chr1_1:9478431-9478450 Msa0006550:intron 30.0%
ATAATGAGAACGTAAACAGT+TGG - chr1_1:9478916-9478935 Msa0006550:intron 30.0%
ACAGAAACACAAAAAACAAG+AGG + chr1_1:9478946-9478965 None:intergenic 30.0%
CTCTTGTGTAACTTCATATT+AGG + chr1_1:9479026-9479045 None:intergenic 30.0%
TGTGTTGAGTATTATTTGCA+TGG - chr1_1:9479106-9479125 Msa0006550:intron 30.0%
! GACATTTTCTGTTCAAATTC+TGG - chr1_1:9479158-9479177 Msa0006550:intron 30.0%
! TCATACGTTTTGTAATTGGT+CGG - chr1_1:9479220-9479239 Msa0006550:intron 30.0%
TATTAATATCATGGCCAGTA+TGG + chr1_1:9479266-9479285 None:intergenic 30.0%
! TCAAGAAATCTTTTGTTGAG+CGG + chr1_1:9479410-9479429 None:intergenic 30.0%
CCTATTACCAAAAAAACAGA+TGG + chr1_1:9479817-9479836 None:intergenic 30.0%
!!! CCATCTGTTTTTTTGGTAAT+AGG - chr1_1:9479814-9479833 Msa0006550:intron 30.0%
AAAAATCTTCTTTAGTACGG+CGG - chr1_1:9479877-9479896 Msa0006550:intron 30.0%
CGAGTCTTAACTTTATTCAT+TGG - chr1_1:9480034-9480053 Msa0006550:intron 30.0%
ATCAGAGTTAGTTCAGATAA+AGG + chr1_1:9480163-9480182 None:intergenic 30.0%
CATCTACACTACATAAAAAC+TGG + chr1_1:9480222-9480241 None:intergenic 30.0%
! CAGTTTTTATGTAGTGTAGA+TGG - chr1_1:9480220-9480239 Msa0006550:CDS 30.0%
CAGCTTAAAGAAAAATCTTC+TGG + chr1_1:9480248-9480267 None:intergenic 30.0%
AAATTTCCTTGGCAAATATG+AGG + chr1_1:9480445-9480464 None:intergenic 30.0%
!!! AAGCTCCTTATTTTGTTTTC+AGG - chr1_1:9480686-9480705 Msa0006550:intron 30.0%
!!! AGCTCCTTATTTTGTTTTCA+GGG - chr1_1:9480687-9480706 Msa0006550:intron 30.0%
TTTCCCCTGAAAACAAAATA+AGG + chr1_1:9480694-9480713 None:intergenic 30.0%
! CCAATTCTTTTCTCATCTAA+AGG + chr1_1:9480775-9480794 None:intergenic 30.0%
CCTTTAGATGAGAAAAGAAT+TGG - chr1_1:9480772-9480791 Msa0006550:intron 30.0%
AATCAGATTGAAGATCATTC+AGG + chr1_1:9480821-9480840 None:intergenic 30.0%
GAAAATGCATAATTCTATCG+CGG + chr1_1:9481120-9481139 None:intergenic 30.0%
! TCTATTTTCCTTCTTTACCA+TGG + chr1_1:9481310-9481329 None:intergenic 30.0%
AAGCAATGGATGTTACAAAT+AGG + chr1_1:9481375-9481394 None:intergenic 30.0%
! AATATATAGATCGGTTGGTA+CGG - chr1_1:9481631-9481650 Msa0006550:intron 30.0%
!!! TGTCAAAAGCATTTTCCATT+AGG + chr1_1:9481672-9481691 None:intergenic 30.0%
GTCTCGATGTATAAATATTG+CGG - chr1_1:9481695-9481714 Msa0006550:CDS 30.0%
CACAGTACATTAACATAAAC+AGG - chr1_1:9481891-9481910 Msa0006550:intron 30.0%
TCATCCAAAATGCTAAATTG+AGG + chr1_1:9481980-9481999 None:intergenic 30.0%
ATGTTCCTATTTCCAAGAAT+AGG - chr1_1:9482142-9482161 Msa0006550:intron 30.0%
! AAGATGTAATAACTTGTGCT+CGG + chr1_1:9482354-9482373 None:intergenic 30.0%
AGCACAAGTTATTACATCTT+CGG - chr1_1:9482354-9482373 Msa0006550:intron 30.0%
TGTCGTCTATATATGTTGAT+TGG + chr1_1:9482572-9482591 None:intergenic 30.0%
ACTTTATGACATTGAATCAG+TGG - chr1_1:9482653-9482672 Msa0006550:intron 30.0%
AAGCACAATCAGTGTAAATT+AGG + chr1_1:9482838-9482857 None:intergenic 30.0%
! AATTTTGTGAACTTAGGTAG+GGG + chr1_1:9482896-9482915 None:intergenic 30.0%
! CAATTTTGTGAACTTAGGTA+GGG + chr1_1:9482897-9482916 None:intergenic 30.0%
! TCAATTTTGTGAACTTAGGT+AGG + chr1_1:9482898-9482917 None:intergenic 30.0%
AGCATACCTTATCTGAAAAT+TGG + chr1_1:9482941-9482960 None:intergenic 30.0%
CTGATGATCAAATATTGAAG+AGG - chr1_1:9483208-9483227 Msa0006550:exon 30.0%
! TTTTGTAGGAAGGTGGTAAA+TGG + chr1_1:9476242-9476261 None:intergenic 35.0%
AAATCAATCAAACTCAGCGA+TGG - chr1_1:9476391-9476410 Msa0006550:three_prime_UTR 35.0%
GAAATGAATGAGAATCGGAT+CGG + chr1_1:9476554-9476573 None:intergenic 35.0%
CCGAAACAGTGAAAACAATA+TGG + chr1_1:9476858-9476877 None:intergenic 35.0%
ATGCAATTTCATCTCGATGT+TGG + chr1_1:9476982-9477001 None:intergenic 35.0%
! TGAAGCACTAATAACAGACA+TGG + chr1_1:9477048-9477067 None:intergenic 35.0%
TACGGTGGAAGATAAGTTAA+TGG - chr1_1:9477187-9477206 Msa0006550:intron 35.0%
!!! TTCGGTTGATTTGTCGTTTT+TGG - chr1_1:9477270-9477289 Msa0006550:intron 35.0%
CAACATCTATTCCTATCTCA+TGG - chr1_1:9477578-9477597 Msa0006550:intron 35.0%
AAATATAGCGTGTAGTGCAA+CGG + chr1_1:9477705-9477724 None:intergenic 35.0%
GCTGTTATTGGAGTATATAC+TGG - chr1_1:9477904-9477923 Msa0006550:intron 35.0%
! CTAGAGGTATGTTTGGAATT+CGG - chr1_1:9477974-9477993 Msa0006550:intron 35.0%
!!! TCGTCTTTTTTTGGTTACGA+AGG - chr1_1:9478035-9478054 Msa0006550:intron 35.0%
!!! TCTTTTTTTGGTTACGAAGG+AGG - chr1_1:9478038-9478057 Msa0006550:intron 35.0%
TAGTAGTTAGTAGAAGACAG+TGG - chr1_1:9478216-9478235 Msa0006550:intron 35.0%
! TAGAAGACAGTGGTCTTAAT+TGG - chr1_1:9478226-9478245 Msa0006550:intron 35.0%
TTAAGGATATAATGCACTGC+AGG - chr1_1:9478483-9478502 Msa0006550:intron 35.0%
ATAACGAGAACGTAAACAGT+TGG - chr1_1:9478694-9478713 Msa0006550:intron 35.0%
GGAGAATCACAAAAAACTAG+AGG + chr1_1:9478724-9478743 None:intergenic 35.0%
!!! TTTTTTGTGATTCTCCGAGA+AGG - chr1_1:9478728-9478747 Msa0006550:intron 35.0%
! TTTTCTGTTCAAATTCTGGC+AGG - chr1_1:9479162-9479181 Msa0006550:intron 35.0%
AAAACTTGAAGAAAGAGGAG+TGG - chr1_1:9479197-9479216 Msa0006550:intron 35.0%
! GTGGTCATACGTTTTGTAAT+TGG - chr1_1:9479216-9479235 Msa0006550:intron 35.0%
CTTGGATCGCAATATTAATG+AGG - chr1_1:9479380-9479399 Msa0006550:intron 35.0%
ATTAGCTCAATCCTTTACCT+TGG - chr1_1:9479462-9479481 Msa0006550:intron 35.0%
ATCTAGTACATGCATATGCA+AGG - chr1_1:9479580-9479599 Msa0006550:intron 35.0%
!! TGGTGGAACTAAAGTTTTGA+TGG - chr1_1:9479703-9479722 Msa0006550:CDS 35.0%
!! GGTGGAACTAAAGTTTTGAT+GGG - chr1_1:9479704-9479723 Msa0006550:CDS 35.0%
!! GAACTAAAGTTTTGATGGGA+TGG - chr1_1:9479708-9479727 Msa0006550:CDS 35.0%
! TATACTGAGCTTGTTCAGTA+AGG + chr1_1:9479786-9479805 None:intergenic 35.0%
!!! AGCTTGACCATCTGTTTTTT+TGG - chr1_1:9479807-9479826 Msa0006550:intron 35.0%
!! GACAGTATTGACATTGATCT+TGG - chr1_1:9479938-9479957 Msa0006550:intron 35.0%
!! GACATTGATCTTGGTAATGA+TGG - chr1_1:9479947-9479966 Msa0006550:intron 35.0%
! TTTATTCATTGGCCTAACAG+AGG - chr1_1:9480045-9480064 Msa0006550:intron 35.0%
! TTATTCATTGGCCTAACAGA+GGG - chr1_1:9480046-9480065 Msa0006550:intron 35.0%
TATATTGGATGCATGAAGTC+AGG - chr1_1:9480112-9480131 Msa0006550:intron 35.0%
!!! GCTCCTTATTTTGTTTTCAG+GGG - chr1_1:9480688-9480707 Msa0006550:intron 35.0%
AACCTGATTGGTGGAAATTT+GGG - chr1_1:9480725-9480744 Msa0006550:intron 35.0%
AAGAGATGACAGCATATAAC+AGG + chr1_1:9481019-9481038 None:intergenic 35.0%
! TAATTGGTGATTGCATGCAA+AGG + chr1_1:9481146-9481165 None:intergenic 35.0%
TGCATGCAATCACCAATTAA+TGG - chr1_1:9481147-9481166 Msa0006550:intron 35.0%
CACCAATTAATGGAATCATC+TGG - chr1_1:9481157-9481176 Msa0006550:intron 35.0%
GACCAGATGATTCCATTAAT+TGG + chr1_1:9481162-9481181 None:intergenic 35.0%
TCAGTAGTGATGTGAAAAAC+TGG - chr1_1:9481204-9481223 Msa0006550:intron 35.0%
AGCAATCCATTAAACCCATA+TGG + chr1_1:9481243-9481262 None:intergenic 35.0%
GAGTTTAATAGCATTCACCA+TGG - chr1_1:9481290-9481309 Msa0006550:intron 35.0%
CATTATGACCATCCTTTCAT+CGG - chr1_1:9481491-9481510 Msa0006550:intron 35.0%
ATTATGACCATCCTTTCATC+GGG - chr1_1:9481492-9481511 Msa0006550:intron 35.0%
AGAATGTAGAACTCTTTGAC+AGG - chr1_1:9481562-9481581 Msa0006550:intron 35.0%
TATATAAGTTAAGGGACACG+TGG + chr1_1:9481588-9481607 None:intergenic 35.0%
CGATGTATAAATATTGCGGA+TGG - chr1_1:9481699-9481718 Msa0006550:CDS 35.0%
AAAGCAATAAAGATCAACGC+TGG + chr1_1:9481810-9481829 None:intergenic 35.0%
GCATCTAGATGTCCTAATTT+CGG - chr1_1:9482010-9482029 Msa0006550:intron 35.0%
ACTCTCAATTAGCCGAAATT+AGG + chr1_1:9482025-9482044 None:intergenic 35.0%
AGGAGGGTTTCGATATTAAT+CGG - chr1_1:9482046-9482065 Msa0006550:intron 35.0%
TCTAATACCAGCCAAGAATA+TGG + chr1_1:9482085-9482104 None:intergenic 35.0%
TGTGTCCTATTCTTGGAAAT+AGG + chr1_1:9482150-9482169 None:intergenic 35.0%
! ATACTAATCTGACTGGCTAT+AGG + chr1_1:9482269-9482288 None:intergenic 35.0%
GGAAAGAATACTAATCTGAC+TGG + chr1_1:9482276-9482295 None:intergenic 35.0%
! GATTTTTCTCTCAACAGAAC+AGG + chr1_1:9482297-9482316 None:intergenic 35.0%
GCACAAGTTATTACATCTTC+GGG - chr1_1:9482355-9482374 Msa0006550:intron 35.0%
TGTTGTATCATCATAGGCAT+AGG + chr1_1:9482526-9482545 None:intergenic 35.0%
TGCCTATGATGATACAACAT+TGG - chr1_1:9482527-9482546 Msa0006550:intron 35.0%
GCCTATGATGATACAACATT+GGG - chr1_1:9482528-9482547 Msa0006550:intron 35.0%
TCCCAATGTTGTATCATCAT+AGG + chr1_1:9482532-9482551 None:intergenic 35.0%
ATGATACAACATTGGGATCA+TGG - chr1_1:9482535-9482554 Msa0006550:intron 35.0%
CAACATATATAGACGACAGT+CGG - chr1_1:9482574-9482593 Msa0006550:intron 35.0%
AATTGAACTTGCCTTACTAG+TGG - chr1_1:9482912-9482931 Msa0006550:CDS 35.0%
AAAATTGGACACCACTAGTA+AGG + chr1_1:9482926-9482945 None:intergenic 35.0%
! TGGTGTCCAATTTTCAGATA+AGG - chr1_1:9482932-9482951 Msa0006550:CDS 35.0%
ACATGTTTCACTACTTGTCT+CGG - chr1_1:9482988-9483007 Msa0006550:intron 35.0%
CAAAGCTCTCAATGTTGTAT+TGG + chr1_1:9483061-9483080 None:intergenic 35.0%
!! TGGAAGTGCTATATGATCAT+AGG - chr1_1:9483149-9483168 Msa0006550:CDS 35.0%
!! AAAGCACCGCAAAAGAAAAA+AGG + chr1_1:9483314-9483333 None:intergenic 35.0%
!!! TTTTTTCTTTTGCGGTGCTT+TGG - chr1_1:9483313-9483332 Msa0006550:five_prime_UTR 35.0%
AAGAAAGCTAAGAGGAGAGA+AGG + chr1_1:9476488-9476507 None:intergenic 40.0%
ATGAGAATCGGATCGGAATT+AGG + chr1_1:9476547-9476566 None:intergenic 40.0%
GAGGAAGAAAAAAACCTGTG+CGG + chr1_1:9476729-9476748 None:intergenic 40.0%
ACTGTTTCGGATATGAAGCA+CGG - chr1_1:9476868-9476887 Msa0006550:intron 40.0%
ATACTGACACTTCTGATCGA+AGG - chr1_1:9476927-9476946 Msa0006550:intron 40.0%
! TTTTTGTTGCTAGAGGCCTA+AGG - chr1_1:9477160-9477179 Msa0006550:intron 40.0%
CCTTAAAACGACAACTACAG+AGG + chr1_1:9477462-9477481 None:intergenic 40.0%
!!! CCTCTGTAGTTGTCGTTTTA+AGG - chr1_1:9477459-9477478 Msa0006550:intron 40.0%
TGTTTATTAGGGATCTGGAG+AGG - chr1_1:9477782-9477801 Msa0006550:intron 40.0%
CAATAACAGCAAGAAGCCTA+CGG + chr1_1:9477894-9477913 None:intergenic 40.0%
GAAATGTATTCAGAGGGTCT+TGG - chr1_1:9477947-9477966 Msa0006550:intron 40.0%
CGAATTCCAAACATACCTCT+AGG + chr1_1:9477976-9477995 None:intergenic 40.0%
!!! GTGCTTCAGTCGTCTTTTTT+TGG - chr1_1:9478026-9478045 Msa0006550:intron 40.0%
AGGCTAAAGTAGAGGCAAAT+TGG - chr1_1:9478091-9478110 Msa0006550:intron 40.0%
GTTGGCTGAAATGCAAACTT+TGG - chr1_1:9478177-9478196 Msa0006550:intron 40.0%
! TACGTTTTGTAATTGGTCGG+AGG - chr1_1:9479223-9479242 Msa0006550:intron 40.0%
TTACACGCACTTATCCATAC+TGG - chr1_1:9479249-9479268 Msa0006550:intron 40.0%
GTTATTGACAGTCCTAATCG+AGG - chr1_1:9479351-9479370 Msa0006550:intron 40.0%
CACAACACAATCCAAGGTAA+AGG + chr1_1:9479476-9479495 None:intergenic 40.0%
GGAGACTTGATTCATTGATG+TGG - chr1_1:9479660-9479679 Msa0006550:intron 40.0%
GACTTGATTCATTGATGTGG+TGG - chr1_1:9479663-9479682 Msa0006550:intron 40.0%
! TTGGTAATAGGAAAGTCACG+AGG - chr1_1:9479826-9479845 Msa0006550:intron 40.0%
GAGCAATTAAACCCTCTGTT+AGG + chr1_1:9480060-9480079 None:intergenic 40.0%
ACATTAACCTCAAAACGCCA+GGG + chr1_1:9480473-9480492 None:intergenic 40.0%
AGGGAGAAAAGATTAAGCAC+AGG + chr1_1:9480544-9480563 None:intergenic 40.0%
!! TTGTTTTCAGGGGAAAGCTT+TGG - chr1_1:9480698-9480717 Msa0006550:intron 40.0%
! AGCTTTGGTATGAACCTGAT+TGG - chr1_1:9480713-9480732 Msa0006550:intron 40.0%
TTTGGTATGAACCTGATTGG+TGG - chr1_1:9480716-9480735 Msa0006550:intron 40.0%
GAACCTGATTGGTGGAAATT+TGG - chr1_1:9480724-9480743 Msa0006550:intron 40.0%
ACCTGATTGGTGGAAATTTG+GGG - chr1_1:9480726-9480745 Msa0006550:intron 40.0%
AGCATTCACCATGGTAAAGA+AGG - chr1_1:9481299-9481318 Msa0006550:intron 40.0%
GTCATAATGGTAACAGAGGA+TGG + chr1_1:9481480-9481499 None:intergenic 40.0%
GATGGTCATAATGGTAACAG+AGG + chr1_1:9481484-9481503 None:intergenic 40.0%
CGATGAAAGGATGGTCATAA+TGG + chr1_1:9481493-9481512 None:intergenic 40.0%
!!! CTTAGGCAGCTTTAGTTTTG+TGG - chr1_1:9481946-9481965 Msa0006550:intron 40.0%
! CATTTTGGATGAATGCAGTG+TGG - chr1_1:9481988-9482007 Msa0006550:intron 40.0%
ATTTCGGCTAATTGAGAGTG+AGG - chr1_1:9482026-9482045 Msa0006550:intron 40.0%
! ATGGTGATGTGTCCTATTCT+TGG + chr1_1:9482157-9482176 None:intergenic 40.0%
CAAGTTATTACATCTTCGGG+TGG - chr1_1:9482358-9482377 Msa0006550:intron 40.0%
AACATTGGGATCATGGATGA+TGG - chr1_1:9482542-9482561 Msa0006550:intron 40.0%
ACATTGGGATCATGGATGAT+GGG - chr1_1:9482543-9482562 Msa0006550:intron 40.0%
AAAGTAGTGACTGCAACATG+AGG + chr1_1:9482638-9482657 None:intergenic 40.0%
TTCAGATAAGGTATGCTCGT+TGG - chr1_1:9482944-9482963 Msa0006550:intron 40.0%
GAGACAAGTAGTGAAACATG+TGG + chr1_1:9482989-9483008 None:intergenic 40.0%
TTGTCTCGGAGTCTAAAGAT+CGG - chr1_1:9483002-9483021 Msa0006550:intron 40.0%
AAAACGTACGAGAGAGACAG+AGG + chr1_1:9476291-9476310 None:intergenic 45.0%
CGCAAGAGAAGAAAGCTAAG+AGG + chr1_1:9476496-9476515 None:intergenic 45.0%
CTAGAGGCCTAAGGTTCTTA+CGG - chr1_1:9477169-9477188 Msa0006550:intron 45.0%
TCTTCCACCGTAAGAACCTT+AGG + chr1_1:9477179-9477198 None:intergenic 45.0%
AGTTAATGGTACTAGGGTGC+AGG - chr1_1:9477201-9477220 Msa0006550:intron 45.0%
TTATTAGGGATCTGGAGAGG+AGG - chr1_1:9477785-9477804 Msa0006550:intron 45.0%
AGCTGAGATGGAATTGTCGT+TGG - chr1_1:9477816-9477835 Msa0006550:intron 45.0%
!! AAGGGTACCTCAAAGGACAA+CGG - chr1_1:9477848-9477867 Msa0006550:intron 45.0%
! AAACTGGTTCTTCTGACCGT+AGG - chr1_1:9477875-9477894 Msa0006550:intron 45.0%
!! CGTAGGCTTCTTGCTGTTAT+TGG - chr1_1:9477892-9477911 Msa0006550:intron 45.0%
! TGGATGCCTAGAGGTATGTT+TGG - chr1_1:9477967-9477986 Msa0006550:intron 45.0%
! AGGAGGTTTGAGACTTTGTC+TGG - chr1_1:9478055-9478074 Msa0006550:intron 45.0%
TTGAGACTTTGTCTGGTGAG+AGG - chr1_1:9478062-9478081 Msa0006550:intron 45.0%
TGAGACTTTGTCTGGTGAGA+GGG - chr1_1:9478063-9478082 Msa0006550:intron 45.0%
! AAGTAGAGGCAAATTGGCCT+TGG - chr1_1:9478097-9478116 Msa0006550:intron 45.0%
!! AAATTGGCCTTGGTGAGAGT+TGG - chr1_1:9478107-9478126 Msa0006550:intron 45.0%
TCCTAATCGAGGTGATAGCT+TGG - chr1_1:9479362-9479381 Msa0006550:intron 45.0%
TCCAAGCTATCACCTCGATT+AGG + chr1_1:9479366-9479385 None:intergenic 45.0%
CACTCACACAACACAATCCA+AGG + chr1_1:9479482-9479501 None:intergenic 45.0%
CTTGGATTGTGTTGTGTGAG+TGG - chr1_1:9479480-9479499 Msa0006550:CDS 45.0%
ATTGTGTTGTGTGAGTGGAC+AGG - chr1_1:9479485-9479504 Msa0006550:CDS 45.0%
!! GTTTTGATGGGATGGAGCAA+AGG - chr1_1:9479716-9479735 Msa0006550:CDS 45.0%
ATCCAATATATGCGCCATCC+TGG + chr1_1:9480102-9480121 None:intergenic 45.0%
GAAGTCAGGAGACGTGATAT+CGG - chr1_1:9480126-9480145 Msa0006550:intron 45.0%
ATCCACAGATGTGGCAACTT+CGG + chr1_1:9480380-9480399 None:intergenic 45.0%
TGAAGTGACATCCACAGATG+TGG + chr1_1:9480389-9480408 None:intergenic 45.0%
CCAGGGAATGCAAATTTCCT+TGG + chr1_1:9480456-9480475 None:intergenic 45.0%
CCAAGGAAATTTGCATTCCC+TGG - chr1_1:9480453-9480472 Msa0006550:intron 45.0%
CACATTAACCTCAAAACGCC+AGG + chr1_1:9480474-9480493 None:intergenic 45.0%
TCCCCAAATTTCCACCAATC+AGG + chr1_1:9480730-9480749 None:intergenic 45.0%
TTGCAAACGAGTAGTGGCAA+TGG + chr1_1:9481526-9481545 None:intergenic 45.0%
AGTGCTTTGCAAACGAGTAG+TGG + chr1_1:9481532-9481551 None:intergenic 45.0%
! ATAGATCGGTTGGTACGGTA+TGG - chr1_1:9481636-9481655 Msa0006550:intron 45.0%
AGGTATTTCCGACATGCATC+TGG - chr1_1:9481839-9481858 Msa0006550:intron 45.0%
!!! GCAGCTTTAGTTTTGTGGCA+TGG - chr1_1:9481951-9481970 Msa0006550:intron 45.0%
!!! GCTTTAGTTTTGTGGCATGG+CGG - chr1_1:9481954-9481973 Msa0006550:intron 45.0%
! GCGGCCTCAATTTAGCATTT+TGG - chr1_1:9481973-9481992 Msa0006550:intron 45.0%
ATTGCGCTGTGCCATATTCT+TGG - chr1_1:9482071-9482090 Msa0006550:intron 45.0%
GATTCCAGAATTGAGAGAGC+TGG - chr1_1:9482223-9482242 Msa0006550:intron 45.0%
TACATCTTCGGGTGGATATG+AGG - chr1_1:9482366-9482385 Msa0006550:intron 45.0%
ACATCTTCGGGTGGATATGA+GGG - chr1_1:9482367-9482386 Msa0006550:intron 45.0%
TGCTGCAGTAGCATCAGTAA+AGG - chr1_1:9482600-9482619 Msa0006550:intron 45.0%
GTGACTGCAACATGAGGATT+GGG + chr1_1:9482632-9482651 None:intergenic 45.0%
AGTGACTGCAACATGAGGAT+TGG + chr1_1:9482633-9482652 None:intergenic 45.0%
!!! TTTATATATTTTTTTAGATT+CGG - chr1_1:9477252-9477271 Msa0006550:intron 5.0%
!! TTATACTATTATAAAAAATT+TGG - chr1_1:9478330-9478349 Msa0006550:intron 5.0%
!! TATACTATTATAAAAAATTT+GGG - chr1_1:9478331-9478350 Msa0006550:intron 5.0%
!! ATAATAATAAAAAATTATCA+AGG + chr1_1:9478524-9478543 None:intergenic 5.0%
!!! ATTTTTTTAAAAAAAAACTA+CGG + chr1_1:9480351-9480370 None:intergenic 5.0%
!! AAAAATATAATATGATAAAT+TGG + chr1_1:9482775-9482794 None:intergenic 5.0%
CAGGCAGTAACAGAGAGTTG+AGG - chr1_1:9476335-9476354 Msa0006550:three_prime_UTR 50.0%
CTTTCTTCTCTTGCGTCGCT+TGG - chr1_1:9476501-9476520 Msa0006550:three_prime_UTR 50.0%
GATCGGAATTAGGAACCTGC+CGG + chr1_1:9476537-9476556 None:intergenic 50.0%
TCTCAAGAAGAACTCCGCAC+AGG - chr1_1:9476712-9476731 Msa0006550:intron 50.0%
GAGGATTGTGGAAGCTGAGA+TGG - chr1_1:9477804-9477823 Msa0006550:intron 50.0%
! TTTGAGGTACCCTTGGCTCT+TGG + chr1_1:9477842-9477861 None:intergenic 50.0%
!! AAGAGCCAAGGGTACCTCAA+AGG - chr1_1:9477841-9477860 Msa0006550:intron 50.0%
!! GTTGTCCTTTGAGGTACCCT+TGG + chr1_1:9477849-9477868 None:intergenic 50.0%
TTTGCTGCCGTTGTCCTTTG+AGG + chr1_1:9477858-9477877 None:intergenic 50.0%
AAAGGACAACGGCAGCAAAC+TGG - chr1_1:9477859-9477878 Msa0006550:intron 50.0%
ACTTTGTCTGGTGAGAGGGA+GGG - chr1_1:9478067-9478086 Msa0006550:intron 50.0%
CCTAAGACCAACTCTCACCA+AGG + chr1_1:9478117-9478136 None:intergenic 50.0%
!! CCTTGGTGAGAGTTGGTCTT+AGG - chr1_1:9478114-9478133 Msa0006550:intron 50.0%
ATGCTTCTCGACTAGTACGC+TGG - chr1_1:9479076-9479095 Msa0006550:intron 50.0%
TGCTTCTCGACTAGTACGCT+GGG - chr1_1:9479077-9479096 Msa0006550:intron 50.0%
TTAGTACGGCGGTTCAGAAC+TGG - chr1_1:9479888-9479907 Msa0006550:intron 50.0%
TAGTACGGCGGTTCAGAACT+GGG - chr1_1:9479889-9479908 Msa0006550:intron 50.0%
GGCATGCCTCATATTTGCCA+AGG - chr1_1:9480436-9480455 Msa0006550:intron 50.0%
! TTGCATTCCCTGGCGTTTTG+AGG - chr1_1:9480463-9480482 Msa0006550:intron 50.0%
ACGAGTAGTGGCAATGGTGA+TGG + chr1_1:9481520-9481539 None:intergenic 50.0%
CAAGCGAACCAGATGCATGT+CGG + chr1_1:9481850-9481869 None:intergenic 50.0%
TCGGCTAATTGAGAGTGAGG+AGG - chr1_1:9482029-9482048 Msa0006550:intron 50.0%
CGGCTAATTGAGAGTGAGGA+GGG - chr1_1:9482030-9482049 Msa0006550:intron 50.0%
CTTGCCAGCTCTCTCAATTC+TGG + chr1_1:9482230-9482249 None:intergenic 50.0%
GAATTGAGAGAGCTGGCAAG+AGG - chr1_1:9482230-9482249 Msa0006550:intron 50.0%
!! GGTATGCTCGTTGGCTTGAT+TGG - chr1_1:9482953-9482972 Msa0006550:intron 50.0%
CGCTTCGACGACGATGTTGT+TGG + chr1_1:9476425-9476444 None:intergenic 55.0%
ACAACATCGTCGTCGAAGCG+AGG - chr1_1:9476425-9476444 Msa0006550:three_prime_UTR 55.0%
CGGATATGAAGCACGGACAG+CGG - chr1_1:9476875-9476894 Msa0006550:intron 55.0%
GAGGCCTAAGGTTCTTACGG+TGG - chr1_1:9477172-9477191 Msa0006550:intron 55.0%
GGATCTGGAGAGGAGGATTG+TGG - chr1_1:9477792-9477811 Msa0006550:intron 55.0%
TTGTCGTTGGCCAAGAGCCA+AGG - chr1_1:9477829-9477848 Msa0006550:intron 55.0%
TGTCGTTGGCCAAGAGCCAA+GGG - chr1_1:9477830-9477849 Msa0006550:intron 55.0%
AGAGGGTCTTGGATGCCTAG+AGG - chr1_1:9477958-9477977 Msa0006550:intron 55.0%
GACTTTGTCTGGTGAGAGGG+AGG - chr1_1:9478066-9478085 Msa0006550:intron 55.0%
GGGAGGGTAGGCTAAAGTAG+AGG - chr1_1:9478083-9478102 Msa0006550:intron 55.0%
GGCCAGGATGGCGCATATAT+TGG - chr1_1:9480097-9480116 Msa0006550:intron 55.0%
CTCCGAAGTTGCCACATCTG+TGG - chr1_1:9480375-9480394 Msa0006550:intron 55.0%
GATGGAGCCCGATGAAAGGA+TGG + chr1_1:9481502-9481521 None:intergenic 55.0%
!! TGGTGATGGAGCCCGATGAA+AGG + chr1_1:9481506-9481525 None:intergenic 55.0%
CGCTGTGCCATATTCTTGGC+TGG - chr1_1:9482075-9482094 Msa0006550:intron 55.0%
AGAGAGCTGGCAAGAGGTTC+AGG - chr1_1:9482236-9482255 Msa0006550:intron 55.0%
ACATCGTCGTCGAAGCGAGG+TGG - chr1_1:9476428-9476447 Msa0006550:three_prime_UTR 60.0%
TGTCTGGTGAGAGGGAGGGT+AGG - chr1_1:9478071-9478090 Msa0006550:intron 60.0%
GCTCTTCTTGACCGTCGACG+TGG - chr1_1:9480076-9480095 Msa0006550:intron 60.0%
TCGTCGTCGAAGCGAGGTGG+AGG - chr1_1:9476431-9476450 Msa0006550:three_prime_UTR 65.0%
TCGTCGAAGCGAGGTGGAGG+AGG - chr1_1:9476434-9476453 Msa0006550:three_prime_UTR 65.0%
!! GTCGCTTGGCTCTACGTCGC+CGG - chr1_1:9476515-9476534 Msa0006550:three_prime_UTR 65.0%
TCTTGACCGTCGACGTGGCC+AGG - chr1_1:9480081-9480100 Msa0006550:intron 65.0%
!! CTTGGCTCTACGTCGCCGGC+AGG - chr1_1:9476519-9476538 Msa0006550:three_prime_UTR 70.0%
GACCGTCGACGTGGCCAGGA+TGG - chr1_1:9480085-9480104 Msa0006550:intron 70.0%
CGCCATCCTGGCCACGTCGA+CGG + chr1_1:9480090-9480109 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 9476237 9483388 9476237 ID=Msa0006550;Name=Msa0006550
chr1_1 mRNA 9476237 9483388 9476237 ID=Msa0006550-mRNA-1;Parent=Msa0006550;Name=Msa0006550-mRNA-1;_AED=0.16;_eAED=0.16;_QI=173|1|1|1|0.81|0.83|12|417|345
chr1_1 exon 9476237 9476676 9476237 ID=Msa0006550-mRNA-1:exon:3396;Parent=Msa0006550-mRNA-1
chr1_1 exon 9477004 9477116 9477004 ID=Msa0006550-mRNA-1:exon:3395;Parent=Msa0006550-mRNA-1
chr1_1 exon 9477713 9477784 9477713 ID=Msa0006550-mRNA-1:exon:3394;Parent=Msa0006550-mRNA-1
chr1_1 exon 9478867 9478917 9478867 ID=Msa0006550-mRNA-1:exon:3393;Parent=Msa0006550-mRNA-1
chr1_1 exon 9479473 9479560 9479473 ID=Msa0006550-mRNA-1:exon:3392;Parent=Msa0006550-mRNA-1
chr1_1 exon 9479666 9479789 9479666 ID=Msa0006550-mRNA-1:exon:3391;Parent=Msa0006550-mRNA-1
chr1_1 exon 9480191 9480263 9480191 ID=Msa0006550-mRNA-1:exon:3390;Parent=Msa0006550-mRNA-1
chr1_1 exon 9480381 9480441 9480381 ID=Msa0006550-mRNA-1:exon:3389;Parent=Msa0006550-mRNA-1
chr1_1 exon 9481646 9481833 9481646 ID=Msa0006550-mRNA-1:exon:3388;Parent=Msa0006550-mRNA-1
chr1_1 exon 9482403 9482452 9482403 ID=Msa0006550-mRNA-1:exon:3387;Parent=Msa0006550-mRNA-1
chr1_1 exon 9482892 9482955 9482892 ID=Msa0006550-mRNA-1:exon:3386;Parent=Msa0006550-mRNA-1
chr1_1 exon 9483085 9483388 9483085 ID=Msa0006550-mRNA-1:exon:3385;Parent=Msa0006550-mRNA-1
chr1_1 five_prime_UTR 9483216 9483388 9483216 ID=Msa0006550-mRNA-1:five_prime_utr;Parent=Msa0006550-mRNA-1
chr1_1 CDS 9483085 9483215 9483085 ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1
chr1_1 CDS 9482892 9482955 9482892 ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1
chr1_1 CDS 9482403 9482452 9482403 ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1
chr1_1 CDS 9481646 9481833 9481646 ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1
chr1_1 CDS 9480381 9480441 9480381 ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1
chr1_1 CDS 9480191 9480263 9480191 ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1
chr1_1 CDS 9479666 9479789 9479666 ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1
chr1_1 CDS 9479473 9479560 9479473 ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1
chr1_1 CDS 9478867 9478917 9478867 ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1
chr1_1 CDS 9477713 9477784 9477713 ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1
chr1_1 CDS 9477004 9477116 9477004 ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1
chr1_1 CDS 9476654 9476676 9476654 ID=Msa0006550-mRNA-1:cds;Parent=Msa0006550-mRNA-1
chr1_1 three_prime_UTR 9476237 9476653 9476237 ID=Msa0006550-mRNA-1:three_prime_utr;Parent=Msa0006550-mRNA-1
Gene Sequence

>Msa0006550

ATGGATACATTACCAACAACATCGTCGTCGAAGCGAGGTGGAGGAGGAAGATCGAAAATCGTTCAAACATCAAAACCTTCTCTCCTCTTAGCTTTCTTCTCTTGCGTCGCTTGGCTCTACGTCGCCGGCAGGTTATGGCAAGATGCAGAGAATCGTAATTTACTTGCTAGTCTTCTCAAGAAGAACTCCGCACAGAGGCCTAAGGTTCTTACGGTGGAAGATAAGTTAATGGTACTAGGGTGCAGGGATCTGGAGAGGAGGATTGTGGAAGCTGAGATGGAATTGTCGTTGGCCAAGAGCCAAGGGTACCTCAAAGGACAACGGCAGCAAACTGGTTCTTCTGACCGTAGGCTTCTTGCTGTTATTGGAGTATATACTGGATTTGGAAGCAAACTCAAAAGAAATGTATTCAGAGGGTCTTGGATGCCTAGAGGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTAATTGGTCGGAGTCCTAATCGAGGTGATAGCTTGGATCGCAATATTAATGAGGAAAACCGCTCAACAAAAGATTTCTTGATTCTTGAAAGTCACGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGCAAAAATCTTCTTTAGTACGGCGGTTCAGAACTGGGATGCTGATTTTTATGTGAAAGTTGATGACAGTATTGACATTGATCTTGAGGGTTTAATTGCTCTTCTTGACCGTCGACGTGGCCAGGATGGCGCATATATTGGATGCATGAAGTCAGGAGACGTGATATCGGAAGAGGGAAAGCTTTGGTATGAACCTGATTGGTGGAAATTTGGGGATGAAAAATCGTATTTCCGACATGCATCTGGTTCGCTTGTTATACTTTCGAAGAATTTGGCACAGTACATTAACATAAACAGTGTATCTTTAAAGACCTATGCCTATGATGATACAACATTGGGATCATGGATGATGGGCGTCCAATCAACATATATAGACGACAGTCGGCTTTGCTGCAGTAGCATCAGTAAAGATAAGGTATGCTCGTTGGCTTGA

Protein sequence

>Msa0006550

MDTLPTTSSSKRGGGGRSKIVQTSKPSLLLAFFSCVAWLYVAGRLWQDAENRNLLASLLKKNSAQRPKVLTVEDKLMVLGCRDLERRIVEAEMELSLAKSQGYLKGQRQQTGSSDRRLLAVIGVYTGFGSKLKRNVFRGSWMPRGDALKKLEERGVVIRFVIGRSPNRGDSLDRNINEENRSTKDFLILESHEEAQEELPKKAKIFFSTAVQNWDADFYVKVDDSIDIDLEGLIALLDRRRGQDGAYIGCMKSGDVISEEGKLWYEPDWWKFGDEKSYFRHASGSLVILSKNLAQYININSVSLKTYAYDDTTLGSWMMGVQSTYIDDSRLCCSSISKDKVCSLA*