Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356130 | XP_013464832.1 | 90.811 | 370 | 22 | 2 | 1 | 364 | 1 | 364 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356130 | sp|A3AWH5|MOF1_ORYSJ | 69.014 | 71 | 22 | 0 | 88 | 158 | 13 | 83 | 1.01e-27 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356130 | A0A072VAU2 | 90.811 | 370 | 22 | 2 | 1 | 364 | 1 | 364 | 0.0 | 665 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1356130 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090380 | Msa1356130 | 0.811596 | 6.469791e-51 | -8.615850e-47 |
| Msa0092970 | Msa1356130 | 0.808726 | 2.688279e-50 | -8.615850e-47 |
| Msa0118010 | Msa1356130 | 0.810655 | 1.034770e-50 | -8.615850e-47 |
| Msa1355510 | Msa1356130 | 0.813621 | 2.333469e-51 | -8.615850e-47 |
| Msa1356130 | Msa1395250 | 0.800825 | 1.201740e-48 | -8.615850e-47 |
| Msa1356130 | Msa1398140 | 0.838150 | 3.410955e-57 | -8.615850e-47 |
| Msa1356130 | Msa1413800 | 0.834851 | 2.359983e-56 | -8.615850e-47 |
| Msa1356130 | Msa1433410 | 0.807964 | 3.908105e-50 | -8.615850e-47 |
| Msa1356130 | Msa1435320 | 0.832982 | 6.927524e-56 | -8.615850e-47 |
| Msa1356130 | Msa1436090 | 0.835578 | 1.547007e-56 | -8.615850e-47 |
| Msa1356130 | Msa1443400 | 0.834079 | 3.687584e-56 | -8.615850e-47 |
| Msa1356130 | Msa1447870 | 0.803882 | 2.819347e-49 | -8.615850e-47 |
| Msa1356130 | Msa1447880 | 0.816795 | 4.599775e-52 | -8.615850e-47 |
| Msa1356130 | Msa1448040 | 0.833416 | 5.399871e-56 | -8.615850e-47 |
| Msa0615210 | Msa1356130 | 0.822210 | 2.676119e-53 | -8.615850e-47 |
| Msa0662460 | Msa1356130 | 0.819985 | 8.709147e-53 | -8.615850e-47 |
| Msa0717860 | Msa1356130 | 0.805216 | 1.485912e-49 | -8.615850e-47 |
| Msa0753930 | Msa1356130 | 0.823904 | 1.077434e-53 | -8.615850e-47 |
| Msa0758520 | Msa1356130 | 0.841957 | 3.467710e-58 | -8.615850e-47 |
| Msa0758570 | Msa1356130 | 0.847474 | 1.130417e-59 | -8.615850e-47 |
| Msa0765140 | Msa1356130 | 0.808926 | 2.435639e-50 | -8.615850e-47 |
| Msa0804870 | Msa1356130 | 0.802607 | 5.176481e-49 | -8.615850e-47 |
| Msa0832950 | Msa1356130 | 0.826220 | 3.056462e-54 | -8.615850e-47 |
| Msa0838870 | Msa1356130 | 0.850881 | 1.274568e-60 | -8.615850e-47 |
| Msa0137860 | Msa1356130 | 0.818256 | 2.155399e-52 | -8.615850e-47 |
| Msa0150620 | Msa1356130 | 0.811619 | 6.394603e-51 | -8.615850e-47 |
| Msa0185100 | Msa1356130 | 0.823701 | 1.202419e-53 | -8.615850e-47 |
| Msa0193190 | Msa1356130 | 0.848220 | 7.039525e-60 | -8.615850e-47 |
| Msa0218090 | Msa1356130 | 0.951134 | 3.872731e-109 | -8.615850e-47 |
| Msa1225580 | Msa1356130 | 0.821531 | 3.842843e-53 | -8.615850e-47 |
| Msa1231980 | Msa1356130 | 0.848665 | 5.302358e-60 | -8.615850e-47 |
| Msa1254870 | Msa1356130 | 0.804971 | 1.671605e-49 | -8.615850e-47 |
| Msa1328430 | Msa1356130 | 0.804044 | 2.609166e-49 | -8.615850e-47 |
| Msa0383900 | Msa1356130 | 0.814204 | 1.735466e-51 | -8.615850e-47 |
| Msa0393100 | Msa1356130 | 0.826897 | 2.107614e-54 | -8.615850e-47 |
| Msa0400010 | Msa1356130 | 0.805945 | 1.044558e-49 | -8.615850e-47 |
| Msa0434400 | Msa1356130 | 0.824084 | 9.774981e-54 | -8.615850e-47 |
| Msa0460600 | Msa1356130 | 0.804137 | 2.495766e-49 | -8.615850e-47 |
| Msa0476770 | Msa1356130 | 0.805117 | 1.558496e-49 | -8.615850e-47 |
| Msa1016100 | Msa1356130 | 0.809459 | 1.872896e-50 | -8.615850e-47 |
| Msa1027910 | Msa1356130 | 0.807873 | 4.085340e-50 | -8.615850e-47 |
| Msa1030210 | Msa1356130 | 0.827333 | 1.657726e-54 | -8.615850e-47 |
| Msa1030240 | Msa1356130 | 0.805294 | 1.431268e-49 | -8.615850e-47 |
| Msa1069250 | Msa1356130 | 0.834335 | 3.181715e-56 | -8.615850e-47 |
| Msa1084890 | Msa1356130 | 0.815711 | 8.037918e-52 | -8.615850e-47 |
| Msa1095590 | Msa1356130 | 0.805595 | 1.237628e-49 | -8.615850e-47 |
| Msa1102210 | Msa1356130 | 0.808169 | 3.534629e-50 | -8.615850e-47 |
| Msa0257910 | Msa1356130 | 0.817099 | 3.930109e-52 | -8.615850e-47 |
| Msa0264680 | Msa1356130 | 0.814510 | 1.485354e-51 | -8.615850e-47 |
| Msa0273070 | Msa1356130 | 0.844405 | 7.714116e-59 | -8.615850e-47 |
| Msa0296910 | Msa1356130 | 0.818259 | 2.151550e-52 | -8.615850e-47 |
| Msa0302730 | Msa1356130 | 0.811450 | 6.959170e-51 | -8.615850e-47 |
| Msa0306310 | Msa1356130 | 0.835928 | 1.260832e-56 | -8.615850e-47 |
| Msa0335070 | Msa1356130 | 0.828128 | 1.067889e-54 | -8.615850e-47 |
| Msa0335080 | Msa1356130 | 0.827213 | 1.770990e-54 | -8.615850e-47 |
| Msa0345050 | Msa1356130 | 0.803080 | 4.134395e-49 | -8.615850e-47 |
| Msa0345890 | Msa1356130 | 0.848520 | 5.815653e-60 | -8.615850e-47 |
| Msa0345980 | Msa1356130 | 0.818992 | 1.467363e-52 | -8.615850e-47 |
| Msa1114670 | Msa1356130 | 0.800349 | 1.502381e-48 | -8.615850e-47 |
| Msa1120580 | Msa1356130 | 0.832952 | 7.048700e-56 | -8.615850e-47 |
| Msa1132980 | Msa1356130 | 0.805271 | 1.446853e-49 | -8.615850e-47 |
| Msa1136760 | Msa1356130 | 0.822034 | 2.939861e-53 | -8.615850e-47 |
| Msa1157110 | Msa1356130 | 0.828762 | 7.507382e-55 | -8.615850e-47 |
| Msa1157670 | Msa1356130 | 0.827904 | 1.208987e-54 | -8.615850e-47 |
| Msa1180430 | Msa1356130 | 0.849681 | 2.766435e-60 | -8.615850e-47 |
| Msa1202110 | Msa1356130 | 0.807158 | 5.794851e-50 | -8.615850e-47 |
| Msa0488580 | Msa1356130 | 0.838758 | 2.377788e-57 | -8.615850e-47 |
| Msa0497690 | Msa1356130 | 0.815008 | 1.151720e-51 | -8.615850e-47 |
| Msa0536540 | Msa1356130 | 0.822626 | 2.141467e-53 | -8.615850e-47 |
| Msa0556270 | Msa1356130 | 0.801978 | 6.976167e-49 | -8.615850e-47 |
| Msa0592650 | Msa1356130 | 0.813103 | 3.031247e-51 | -8.615850e-47 |
| Msa0592660 | Msa1356130 | 0.805754 | 1.145651e-49 | -8.615850e-47 |
| Msa0859040 | Msa1356130 | 0.800419 | 1.454107e-48 | -8.615850e-47 |
| Msa0867610 | Msa1356130 | 0.909673 | 4.391473e-82 | -8.615850e-47 |
| Msa0895620 | Msa1356130 | 0.800907 | 1.155999e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356130 | MtrunA17_Chr2g0320231 | 90.811 | 370 | 22 | 2 | 1 | 364 | 1 | 364 | 0.0 | 665 |
| Msa1356130 | MtrunA17_Chr8g0379121 | 64.493 | 138 | 43 | 2 | 32 | 167 | 48 | 181 | 2.99e-45 | 160 |
| Msa1356130 | MtrunA17_Chr2g0283951 | 56.410 | 156 | 50 | 5 | 35 | 183 | 37 | 181 | 1.26e-42 | 152 |
| Msa1356130 | MtrunA17_Chr7g0243081 | 66.667 | 111 | 36 | 1 | 52 | 162 | 27 | 136 | 1.37e-41 | 149 |
| Msa1356130 | MtrunA17_Chr1g0162931 | 69.737 | 76 | 23 | 0 | 84 | 159 | 5 | 80 | 1.68e-31 | 120 |
| Msa1356130 | MtrunA17_Chr1g0210911 | 60.000 | 90 | 33 | 2 | 83 | 169 | 8 | 97 | 1.39e-30 | 119 |
| Msa1356130 | MtrunA17_Chr2g0288601 | 64.865 | 74 | 26 | 0 | 75 | 148 | 49 | 122 | 1.11e-29 | 111 |
| Msa1356130 | MtrunA17_Chr3g0095611 | 55.696 | 79 | 29 | 1 | 75 | 153 | 3 | 75 | 4.72e-23 | 95.9 |
| Msa1356130 | MtrunA17_Chr1g0154261 | 64.789 | 71 | 22 | 2 | 89 | 158 | 120 | 188 | 2.38e-21 | 93.2 |
| Msa1356130 | MtrunA17_Chr6g0479431 | 68.966 | 58 | 18 | 0 | 96 | 153 | 201 | 258 | 1.94e-20 | 91.7 |
| Msa1356130 | MtrunA17_Chr5g0410741 | 68.966 | 58 | 18 | 0 | 96 | 153 | 218 | 275 | 4.14e-20 | 90.9 |
| Msa1356130 | MtrunA17_Chr3g0109981 | 68.966 | 58 | 18 | 0 | 96 | 153 | 273 | 330 | 5.87e-20 | 91.3 |
| Msa1356130 | MtrunA17_Chr8g0366281 | 63.934 | 61 | 22 | 0 | 96 | 156 | 172 | 232 | 1.07e-19 | 89.4 |
| Msa1356130 | MtrunA17_Chr7g0261911 | 67.857 | 56 | 18 | 0 | 98 | 153 | 263 | 318 | 2.28e-19 | 89.4 |
| Msa1356130 | MtrunA17_Chr7g0258551 | 50.000 | 96 | 40 | 3 | 93 | 187 | 208 | 296 | 5.86e-19 | 87.4 |
| Msa1356130 | MtrunA17_Chr1g0190301 | 61.194 | 67 | 25 | 1 | 87 | 153 | 166 | 231 | 6.94e-19 | 87.4 |
| Msa1356130 | MtrunA17_Chr7g0274471 | 66.071 | 56 | 19 | 0 | 98 | 153 | 219 | 274 | 7.30e-19 | 87.8 |
| Msa1356130 | MtrunA17_Chr1g0175091 | 50.000 | 96 | 39 | 3 | 70 | 164 | 239 | 326 | 2.80e-17 | 82.8 |
| Msa1356130 | MtrunA17_Chr6g0461641 | 62.264 | 53 | 20 | 0 | 98 | 150 | 43 | 95 | 6.09e-17 | 81.6 |
| Msa1356130 | MtrunA17_Chr5g0409731 | 60.345 | 58 | 23 | 0 | 93 | 150 | 21 | 78 | 6.72e-17 | 80.5 |
| Msa1356130 | MtrunA17_Chr2g0321461 | 58.929 | 56 | 23 | 0 | 98 | 153 | 46 | 101 | 7.32e-17 | 81.3 |
| Msa1356130 | MtrunA17_Chr7g0254981 | 65.000 | 60 | 20 | 1 | 99 | 157 | 52 | 111 | 1.56e-16 | 79.0 |
| Msa1356130 | MtrunA17_Chr1g0175081 | 54.839 | 62 | 27 | 1 | 99 | 159 | 24 | 85 | 3.86e-16 | 73.6 |
| Msa1356130 | MtrunA17_Chr1g0197171 | 60.714 | 56 | 22 | 0 | 98 | 153 | 45 | 100 | 4.45e-16 | 78.2 |
| Msa1356130 | MtrunA17_Chr2g0290991 | 42.857 | 105 | 50 | 2 | 98 | 202 | 40 | 134 | 5.38e-16 | 78.2 |
| Msa1356130 | MtrunA17_Chr2g0291021 | 65.455 | 55 | 19 | 0 | 99 | 153 | 51 | 105 | 1.32e-15 | 77.0 |
| Msa1356130 | MtrunA17_Chr5g0417521 | 52.830 | 53 | 25 | 0 | 98 | 150 | 16 | 68 | 3.52e-15 | 76.3 |
| Msa1356130 | MtrunA17_Chr8g0356501 | 55.357 | 56 | 25 | 0 | 98 | 153 | 38 | 93 | 9.41e-15 | 74.7 |
| Msa1356130 | MtrunA17_Chr2g0310011 | 55.357 | 56 | 25 | 0 | 98 | 153 | 36 | 91 | 2.28e-14 | 73.6 |
| Msa1356130 | MtrunA17_Chr4g0042451 | 51.786 | 56 | 27 | 0 | 98 | 153 | 18 | 73 | 1.11e-13 | 71.6 |
| Msa1356130 | MtrunA17_Chr1g0175071 | 58.491 | 53 | 22 | 0 | 99 | 151 | 179 | 231 | 1.58e-13 | 70.9 |
| Msa1356130 | MtrunA17_Chr7g0242521 | 61.017 | 59 | 20 | 1 | 99 | 154 | 15 | 73 | 1.64e-13 | 69.7 |
| Msa1356130 | MtrunA17_Chr7g0258531 | 58.491 | 53 | 22 | 0 | 99 | 151 | 215 | 267 | 8.89e-12 | 65.9 |
| Msa1356130 | MtrunA17_Chr4g0009901 | 43.243 | 74 | 38 | 2 | 80 | 150 | 148 | 220 | 1.03e-11 | 64.7 |
| Msa1356130 | MtrunA17_Chr4g0062921 | 39.130 | 92 | 48 | 1 | 67 | 150 | 197 | 288 | 2.31e-11 | 65.1 |
| Msa1356130 | MtrunA17_Chr2g0304841 | 52.727 | 55 | 25 | 1 | 96 | 150 | 212 | 265 | 3.38e-11 | 64.7 |
| Msa1356130 | MtrunA17_Chr4g0045361 | 45.455 | 66 | 36 | 0 | 85 | 150 | 262 | 327 | 3.49e-11 | 64.3 |
| Msa1356130 | MtrunA17_Chr4g0031961 | 53.125 | 64 | 29 | 1 | 87 | 150 | 121 | 183 | 3.68e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356130 | AT2G38300.1 | 73.256 | 86 | 23 | 0 | 77 | 162 | 34 | 119 | 1.05e-37 | 139 |
| Msa1356130 | AT2G42660.1 | 67.021 | 94 | 20 | 2 | 89 | 177 | 42 | 129 | 5.97e-35 | 129 |
| Msa1356130 | AT2G40260.1 | 75.325 | 77 | 19 | 0 | 80 | 156 | 65 | 141 | 4.86e-33 | 128 |
| Msa1356130 | AT4G04605.1 | 65.882 | 85 | 27 | 1 | 89 | 171 | 6 | 90 | 2.77e-31 | 118 |
| Msa1356130 | AT2G02060.2 | 67.059 | 85 | 21 | 2 | 66 | 150 | 5 | 82 | 8.34e-29 | 113 |
| Msa1356130 | AT2G02060.1 | 67.059 | 85 | 21 | 2 | 66 | 150 | 5 | 82 | 8.34e-29 | 113 |
| Msa1356130 | AT1G14600.1 | 67.606 | 71 | 23 | 0 | 89 | 159 | 15 | 85 | 1.33e-27 | 109 |
| Msa1356130 | AT4G04555.1 | 61.644 | 73 | 28 | 0 | 85 | 157 | 2 | 74 | 5.63e-25 | 98.2 |
| Msa1356130 | AT4G04580.1 | 60.870 | 69 | 27 | 0 | 89 | 157 | 6 | 74 | 1.54e-23 | 96.3 |
| Msa1356130 | AT5G42630.2 | 65.079 | 63 | 22 | 0 | 96 | 158 | 104 | 166 | 7.77e-22 | 93.2 |
| Msa1356130 | AT5G42630.1 | 65.079 | 63 | 22 | 0 | 96 | 158 | 104 | 166 | 1.37e-21 | 94.0 |
| Msa1356130 | AT1G32240.2 | 68.966 | 58 | 18 | 0 | 96 | 153 | 212 | 269 | 3.82e-20 | 91.3 |
| Msa1356130 | AT4G17695.1 | 62.319 | 69 | 24 | 1 | 88 | 156 | 157 | 223 | 4.29e-20 | 90.5 |
| Msa1356130 | AT1G32240.1 | 68.966 | 58 | 18 | 0 | 96 | 153 | 212 | 269 | 4.73e-20 | 91.3 |
| Msa1356130 | AT5G16560.1 | 68.966 | 58 | 18 | 0 | 96 | 153 | 218 | 275 | 7.24e-20 | 90.9 |
| Msa1356130 | AT5G29000.4 | 36.250 | 160 | 89 | 5 | 5 | 153 | 130 | 287 | 3.42e-19 | 87.8 |
| Msa1356130 | AT4G28610.1 | 48.276 | 87 | 43 | 1 | 99 | 183 | 227 | 313 | 5.19e-19 | 88.2 |
| Msa1356130 | AT5G29000.2 | 36.250 | 160 | 89 | 5 | 5 | 153 | 130 | 287 | 8.13e-19 | 87.8 |
| Msa1356130 | AT5G29000.1 | 36.250 | 160 | 89 | 5 | 5 | 153 | 87 | 244 | 1.01e-18 | 87.0 |
| Msa1356130 | AT5G29000.3 | 36.250 | 160 | 89 | 5 | 5 | 153 | 87 | 244 | 1.01e-18 | 87.0 |
| Msa1356130 | AT5G45580.1 | 47.191 | 89 | 42 | 1 | 93 | 181 | 3 | 86 | 3.02e-18 | 84.0 |
| Msa1356130 | AT5G45580.2 | 47.191 | 89 | 42 | 1 | 93 | 181 | 19 | 102 | 4.63e-18 | 84.0 |
| Msa1356130 | AT3G04450.3 | 52.778 | 72 | 29 | 1 | 99 | 165 | 240 | 311 | 6.37e-18 | 84.0 |
| Msa1356130 | AT3G04450.4 | 61.818 | 55 | 21 | 0 | 99 | 153 | 200 | 254 | 2.81e-17 | 83.2 |
| Msa1356130 | AT3G04450.2 | 61.818 | 55 | 21 | 0 | 99 | 153 | 200 | 254 | 2.81e-17 | 83.2 |
| Msa1356130 | AT3G04450.1 | 61.818 | 55 | 21 | 0 | 99 | 153 | 240 | 294 | 3.13e-17 | 83.2 |
| Msa1356130 | AT5G18240.2 | 43.269 | 104 | 56 | 2 | 65 | 167 | 13 | 114 | 1.31e-16 | 81.3 |
| Msa1356130 | AT5G18240.3 | 43.269 | 104 | 56 | 2 | 65 | 167 | 13 | 114 | 1.31e-16 | 81.3 |
| Msa1356130 | AT3G13040.3 | 67.273 | 55 | 18 | 0 | 99 | 153 | 243 | 297 | 1.49e-16 | 81.3 |
| Msa1356130 | AT3G13040.1 | 67.273 | 55 | 18 | 0 | 99 | 153 | 243 | 297 | 1.49e-16 | 81.3 |
| Msa1356130 | AT3G13040.2 | 67.273 | 55 | 18 | 0 | 99 | 153 | 243 | 297 | 1.49e-16 | 81.3 |
| Msa1356130 | AT5G18240.1 | 43.269 | 104 | 56 | 2 | 65 | 167 | 13 | 114 | 1.63e-16 | 80.9 |
| Msa1356130 | AT5G18240.4 | 43.269 | 104 | 56 | 2 | 65 | 167 | 13 | 114 | 1.63e-16 | 80.9 |
| Msa1356130 | AT5G18240.5 | 43.269 | 104 | 56 | 2 | 65 | 167 | 13 | 114 | 1.67e-16 | 80.9 |
| Msa1356130 | AT2G06020.1 | 47.561 | 82 | 40 | 1 | 80 | 158 | 66 | 147 | 3.23e-16 | 79.0 |
| Msa1356130 | AT3G04030.1 | 55.932 | 59 | 25 | 1 | 98 | 155 | 46 | 104 | 5.21e-16 | 79.3 |
| Msa1356130 | AT3G04030.3 | 55.932 | 59 | 25 | 1 | 98 | 155 | 46 | 104 | 6.08e-16 | 79.0 |
| Msa1356130 | AT2G01060.1 | 55.844 | 77 | 21 | 2 | 99 | 162 | 17 | 93 | 8.63e-16 | 77.4 |
| Msa1356130 | AT3G12730.1 | 35.833 | 120 | 64 | 2 | 98 | 213 | 24 | 134 | 1.76e-15 | 75.5 |
| Msa1356130 | AT5G06800.3 | 58.333 | 60 | 24 | 1 | 99 | 157 | 194 | 253 | 3.54e-15 | 75.5 |
| Msa1356130 | AT2G20400.2 | 63.636 | 55 | 20 | 0 | 99 | 153 | 233 | 287 | 3.86e-15 | 76.6 |
| Msa1356130 | AT2G20400.1 | 63.636 | 55 | 20 | 0 | 99 | 153 | 233 | 287 | 3.88e-15 | 76.6 |
| Msa1356130 | AT3G24120.1 | 56.604 | 53 | 23 | 0 | 98 | 150 | 42 | 94 | 9.80e-15 | 74.3 |
| Msa1356130 | AT4G13640.2 | 56.604 | 53 | 23 | 0 | 98 | 150 | 38 | 90 | 9.89e-15 | 74.3 |
| Msa1356130 | AT3G24120.2 | 56.604 | 53 | 23 | 0 | 98 | 150 | 42 | 94 | 9.93e-15 | 74.7 |
| Msa1356130 | AT4G13640.1 | 56.604 | 53 | 23 | 0 | 98 | 150 | 38 | 90 | 1.01e-14 | 74.3 |
| Msa1356130 | AT5G06800.2 | 58.333 | 60 | 24 | 1 | 99 | 157 | 194 | 253 | 1.58e-14 | 74.7 |
| Msa1356130 | AT5G06800.1 | 58.333 | 60 | 24 | 1 | 99 | 157 | 194 | 253 | 1.67e-14 | 74.7 |
| Msa1356130 | AT1G79430.2 | 55.357 | 56 | 25 | 0 | 98 | 153 | 35 | 90 | 1.86e-14 | 74.3 |
| Msa1356130 | AT1G69580.1 | 34.711 | 121 | 73 | 3 | 98 | 213 | 35 | 154 | 5.47e-14 | 72.8 |
| Msa1356130 | AT1G69580.2 | 40.426 | 94 | 51 | 2 | 98 | 186 | 35 | 128 | 6.76e-14 | 72.4 |
| Msa1356130 | AT3G04030.2 | 54.237 | 59 | 25 | 2 | 98 | 155 | 46 | 103 | 1.49e-13 | 72.0 |
| Msa1356130 | AT5G59570.2 | 57.143 | 56 | 23 | 1 | 95 | 150 | 139 | 193 | 1.50e-11 | 65.1 |
| Msa1356130 | AT5G59570.1 | 57.143 | 56 | 23 | 1 | 95 | 150 | 139 | 193 | 1.50e-11 | 65.1 |
| Msa1356130 | AT2G03500.1 | 50.746 | 67 | 31 | 1 | 84 | 150 | 222 | 286 | 4.15e-11 | 64.7 |
| Msa1356130 | AT3G62670.1 | 50.000 | 60 | 26 | 1 | 95 | 150 | 209 | 268 | 5.21e-11 | 64.3 |
| Msa1356130 | AT5G05090.1 | 52.000 | 75 | 33 | 3 | 77 | 150 | 61 | 133 | 7.69e-11 | 62.8 |
| Msa1356130 | AT4G31920.1 | 40.000 | 105 | 61 | 2 | 85 | 189 | 171 | 273 | 7.90e-11 | 63.9 |
Find 75 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACAAGGTTTAATAAATTT+TGG | 0.129635 | tig0015451:-20172 | Msa1356130:five_prime_UTR |
| AGATATGTTAGTTAAATATT+TGG | 0.161045 | tig0015451:+20071 | Msa1356130:intergenic |
| TTTATAAACAAGTATCTTAT+AGG | 0.188196 | tig0015451:-20271 | Msa1356130:five_prime_UTR |
| GAAATTTGAACATAAATTAA+TGG | 0.280764 | tig0015451:-19952 | Msa1356130:exon |
| AATATAACTATCGTATTATA+TGG | 0.284509 | tig0015451:+20043 | Msa1356130:intergenic |
| CTTACTTGGCTAGACCTAAT+AGG | 0.308735 | tig0015451:+17629 | Msa1356130:intergenic |
| GATATGTTAGTTAAATATTT+GGG | 0.317333 | tig0015451:+20072 | Msa1356130:intergenic |
| TGTTTCTCATCACTTTGAAT+TGG | 0.337664 | tig0015451:+16377 | Msa1356130:intergenic |
| AATATTTAACTAACATATCT+TGG | 0.346553 | tig0015451:-20068 | Msa1356130:five_prime_UTR |
| GCAAGGAAGGCATCACATTA+TGG | 0.348737 | tig0015451:-18310 | Msa1356130:CDS |
| GTCCTCTCACATTCATTAAC+TGG | 0.352977 | tig0015451:+18977 | Msa1356130:intergenic |
| CATTAACTGGAGAACTAACT+TGG | 0.357662 | tig0015451:+18990 | Msa1356130:intergenic |
| TTCACTGAGTACACAATGTT+TGG | 0.372301 | tig0015451:-17488 | Msa1356130:CDS |
| CGGGTAGTAATTGACTTACT+TGG | 0.374141 | tig0015451:+17615 | Msa1356130:intergenic |
| TTCACATCTATTTGATGTAA+AGG | 0.385780 | tig0015451:-17678 | Msa1356130:CDS |
| TCAAAGCTCATGACACTTCA+AGG | 0.388453 | tig0015451:-18206 | Msa1356130:intron |
| TTCTCATCACTTTGAATTGG+AGG | 0.401642 | tig0015451:+16380 | Msa1356130:intergenic |
| ACATGTGAAGAGTCATTTGC+AGG | 0.413814 | tig0015451:-18944 | Msa1356130:intron |
| GAAATAATATTGCACCTATT+AGG | 0.414171 | tig0015451:-17643 | Msa1356130:CDS |
| AATAATAATTCTAGTGAAGA+AGG | 0.443311 | tig0015451:-19711 | Msa1356130:CDS |
| TTATCTCAAGGGGATGATAA+TGG | 0.444178 | tig0015451:-17581 | Msa1356130:CDS |
| TTGTGCTTGTTCCTAAGTCT+TGG | 0.452034 | tig0015451:+20189 | Msa1356130:intergenic |
| GTGCATGCTGTTGAGAGGCT+TGG | 0.454830 | tig0015451:-19603 | Msa1356130:CDS |
| CATCACATTATGGATATGTA+TGG | 0.459114 | tig0015451:-18300 | Msa1356130:CDS |
| ACAAAAGATAAATGAAGATC+AGG | 0.462114 | tig0015451:+19624 | Msa1356130:intergenic |
| TGAAAGAGAAAGTATTGTAC+TGG | 0.468499 | tig0015451:+16416 | Msa1356130:intergenic |
| AGTGAAAGTAGTAGCGGTAT+CGG | 0.469081 | tig0015451:-19897 | Msa1356130:CDS |
| CTTCGAATCGGTAAAGAGGC+AGG | 0.473218 | tig0015451:+19867 | Msa1356130:intergenic |
| AATTCTAGTGAAGAAGGAAA+AGG | 0.475804 | tig0015451:-19705 | Msa1356130:CDS |
| GAAGAATTACAAACTTATGT+TGG | 0.479251 | tig0015451:-20020 | Msa1356130:five_prime_UTR |
| TTTGTAGATTTCATGAGAGT+GGG | 0.483163 | tig0015451:-17757 | Msa1356130:intron |
| CTCGACTTAGCTTTAGCTCT+AGG | 0.486541 | tig0015451:+16460 | Msa1356130:intergenic |
| CATGCTGTTGAGAGGCTTGG+AGG | 0.487742 | tig0015451:-19600 | Msa1356130:CDS |
| CGAAAATGCCTAGGCTTCGT+TGG | 0.491348 | tig0015451:-19650 | Msa1356130:CDS |
| TGATACTTGAGTTTGATGTA+TGG | 0.492822 | tig0015451:+16545 | Msa1356130:intergenic |
| TTCAAATTGTAAGTTTACAT+AGG | 0.499050 | tig0015451:-20221 | Msa1356130:five_prime_UTR |
| ATAATTGATAGAACTAGAAA+AGG | 0.502223 | tig0015451:+17535 | Msa1356130:intergenic |
| ATTCTAGTGAAGAAGGAAAA+GGG | 0.515576 | tig0015451:-19704 | Msa1356130:CDS |
| ATGGATATGTATGGACACTT+TGG | 0.517868 | tig0015451:-18291 | Msa1356130:CDS |
| AACGAAGAAGCCGTGGACGA+TGG | 0.526235 | tig0015451:-19822 | Msa1356130:CDS |
| AGGAAAAGGGCGTGGAAGTA+CGG | 0.529396 | tig0015451:-19691 | Msa1356130:CDS |
| AAAATAGAGCAATGCAAGGA+AGG | 0.540544 | tig0015451:-18323 | Msa1356130:CDS |
| GTACACAATGTTTGGTTCTG+AGG | 0.540563 | tig0015451:-17480 | Msa1356130:intron |
| TATGATGGTTGTTTCAGTAG+AGG | 0.540634 | tig0015451:+18237 | Msa1356130:intergenic |
| ATTGTGTACTCAGTGAAGAT+AGG | 0.541781 | tig0015451:+17494 | Msa1356130:intergenic |
| GAACTAGAAAAGGTGCTCCA+TGG | 0.547694 | tig0015451:+17545 | Msa1356130:intergenic |
| ATTGTAAGTTTACATAGGTG+TGG | 0.549908 | tig0015451:-20216 | Msa1356130:five_prime_UTR |
| TCACTCTTGACATCTTTGCT+AGG | 0.551418 | tig0015451:+19915 | Msa1356130:intergenic |
| GCTTTGATTTCATTATATGA+TGG | 0.554601 | tig0015451:+18222 | Msa1356130:intergenic |
| TCAGGAGTCCAACGAAGCCT+AGG | 0.559435 | tig0015451:+19642 | Msa1356130:intergenic |
| AATGAGATATCATCACAAGA+AGG | 0.560760 | tig0015451:-19747 | Msa1356130:CDS |
| AAGGGCGTGGAAGTACGGTT+AGG | 0.570454 | tig0015451:-19686 | Msa1356130:CDS |
| GGTGTGGAATTCCAAGACTT+AGG | 0.582021 | tig0015451:-20200 | Msa1356130:five_prime_UTR |
| ATGAGATATCATCACAAGAA+GGG | 0.586610 | tig0015451:-19746 | Msa1356130:CDS |
| AGTGAAGAAGGAAAAGGGCG+TGG | 0.587852 | tig0015451:-19699 | Msa1356130:CDS |
| ATTAACTGGAGAACTAACTT+GGG | 0.599704 | tig0015451:+18991 | Msa1356130:intergenic |
| ATGATCATCTCCATCGTCCA+CGG | 0.603158 | tig0015451:+19812 | Msa1356130:intergenic |
| CTTCAGATCAAGTTCAGTGT+GGG | 0.604465 | tig0015451:-17711 | Msa1356130:CDS |
| ATGTGAGGTCGAAAATGCCT+AGG | 0.605149 | tig0015451:-19659 | Msa1356130:CDS |
| TTGTTGCTTATTTCACCACA+AGG | 0.610333 | tig0015451:+19768 | Msa1356130:intergenic |
| ATGCTGTTGAGAGGCTTGGA+GGG | 0.612873 | tig0015451:-19599 | Msa1356130:CDS |
| GTCAAGAGTGAAAGTAGTAG+CGG | 0.626941 | tig0015451:-19903 | Msa1356130:CDS |
| AAGCTTGATGAGTCTGGCCA+AGG | 0.633707 | tig0015451:-18481 | Msa1356130:intron |
| CGATTTAAACGAAGAAGCCG+TGG | 0.635364 | tig0015451:-19829 | Msa1356130:CDS |
| AAGACTTAGGAACAAGCACA+AGG | 0.643200 | tig0015451:-20187 | Msa1356130:five_prime_UTR |
| TGTTTCAGTAGAGGAGACGA+TGG | 0.646955 | tig0015451:+18246 | Msa1356130:intergenic |
| ATTTGAACATAAATTAATGG+CGG | 0.647988 | tig0015451:-19949 | Msa1356130:exon |
| CTCCAGTTAATGAATGTGAG+AGG | 0.648001 | tig0015451:-18979 | Msa1356130:CDS |
| GTTTCAGTAGAGGAGACGAT+GGG | 0.648534 | tig0015451:+18247 | Msa1356130:intergenic |
| TGTTGCTTATTTCACCACAA+GGG | 0.657001 | tig0015451:+19769 | Msa1356130:intergenic |
| GTGATAAGTGAAGGCCCTTG+TGG | 0.681709 | tig0015451:-19783 | Msa1356130:CDS |
| TCTTCAGATCAAGTTCAGTG+TGG | 0.702689 | tig0015451:-17712 | Msa1356130:CDS |
| AATCTTTCTAAAGCACAACA+TGG | 0.705910 | tig0015451:-20129 | Msa1356130:five_prime_UTR |
| CATGTGATAGTGATAAGTGA+AGG | 0.715293 | tig0015451:-19792 | Msa1356130:CDS |
| GTACGGTTAGGCAATATGTG+AGG | 0.731217 | tig0015451:-19674 | Msa1356130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAATGTATTTATTTTG+AGG | - | tig0015451:17660-17679 | Msa1356130:CDS | 10.0% |
| !!! | ATTTAATGTATTTATTTTGA+GGG | - | tig0015451:17661-17680 | Msa1356130:CDS | 10.0% |
| !! | AAAAATAAAATAAAATTCCA+TGG | - | tig0015451:18586-18605 | Msa1356130:intron | 10.0% |
| !! | TATATAAGAAAAATATGTAA+TGG | + | tig0015451:18850-18869 | Msa1356130:intergenic | 10.0% |
| !!! | TTCATTTATTTAGTTTATTT+AGG | + | tig0015451:19373-19392 | Msa1356130:intergenic | 10.0% |
| !! | TCATATATACTTAATTATAT+AGG | - | tig0015451:19768-19787 | Msa1356130:CDS | 10.0% |
| !! | CATATATACTTAATTATATA+GGG | - | tig0015451:19769-19788 | Msa1356130:CDS | 10.0% |
| !! | TACTTGTTTATAAAAAAGTA+CGG | + | tig0015451:16436-16455 | Msa0764750:intergenic | 15.0% |
| !! | TTTATAAACAAGTATCTTAT+AGG | - | tig0015451:16442-16461 | Msa1356130:CDS | 15.0% |
| !! | GATATGTTAGTTAAATATTT+GGG | + | tig0015451:16644-16663 | Msa1356130:intergenic | 15.0% |
| !! | AGATATGTTAGTTAAATATT+TGG | + | tig0015451:16645-16664 | Msa1356130:intergenic | 15.0% |
| !! | AATATTTAACTAACATATCT+TGG | - | tig0015451:16645-16664 | Msa1356130:intron | 15.0% |
| !! | AATATAACTATCGTATTATA+TGG | + | tig0015451:16673-16692 | Msa1356130:intergenic | 15.0% |
| !! | GAAATTTGAACATAAATTAA+TGG | - | tig0015451:16761-16780 | Msa1356130:intron | 15.0% |
| !! | ACATAATTTAGTGTAATTAT+AGG | + | tig0015451:17947-17966 | Msa1356130:intergenic | 15.0% |
| !!! | CGTTTTAATTATGATTTTTT+TGG | - | tig0015451:18186-18205 | Msa1356130:intron | 15.0% |
| !!! | TTTAATTATGATTTTTTTGG+AGG | - | tig0015451:18189-18208 | Msa1356130:intron | 15.0% |
| !!! | AAATAGAAACATTTAAAACA+TGG | - | tig0015451:18895-18914 | Msa1356130:intron | 15.0% |
| !! | ATAGATATACTTAACTATAT+AGG | - | tig0015451:19303-19322 | Msa1356130:intron | 15.0% |
| !! | TAGATATACTTAACTATATA+GGG | - | tig0015451:19304-19323 | Msa1356130:intron | 15.0% |
| !! | TCAAAAGATAACATATTTAA+GGG | + | tig0015451:19568-19587 | Msa1356130:intergenic | 15.0% |
| !! | TTCAAAAGATAACATATTTA+AGG | + | tig0015451:19569-19588 | Msa1356130:intergenic | 15.0% |
| !! | AATTTCGTTTAAAAACTTAT+AGG | + | tig0015451:19748-19767 | Msa1356130:intergenic | 15.0% |
| !!! | ACTTGTTTATAAAAAAGTAC+GGG | + | tig0015451:16435-16454 | Msa0764750:intergenic | 20.0% |
| !! | TTCAAATTGTAAGTTTACAT+AGG | - | tig0015451:16492-16511 | Msa1356130:CDS | 20.0% |
| !! | ATTTGAACATAAATTAATGG+CGG | - | tig0015451:16764-16783 | Msa1356130:intron | 20.0% |
| !! | AATAATAATTCTAGTGAAGA+AGG | - | tig0015451:17002-17021 | Msa1356130:intron | 20.0% |
| !! | CATAAATTTATCATTACCTT+TGG | - | tig0015451:17173-17192 | Msa1356130:intron | 20.0% |
| !! | CACTTAATCTTATATAGATA+TGG | - | tig0015451:17621-17640 | Msa1356130:CDS | 20.0% |
| !! | TAACAATATTGGATATATGT+AGG | - | tig0015451:17692-17711 | Msa1356130:CDS | 20.0% |
| !! | GGTAATATATATTCTTGTAT+AGG | - | tig0015451:17790-17809 | Msa1356130:intron | 20.0% |
| !!! | TGATTTTCTCACATTATTAA+CGG | - | tig0015451:17966-17985 | Msa1356130:intron | 20.0% |
| !! | TAGATTAATTGTGTTTGTAA+TGG | - | tig0015451:18040-18059 | Msa1356130:intron | 20.0% |
| !! | AGATTAATTGTGTTTGTAAT+GGG | - | tig0015451:18041-18060 | Msa1356130:intron | 20.0% |
| !!! | TGATTTTGCTAACAATATTA+AGG | + | tig0015451:18270-18289 | Msa1356130:intergenic | 20.0% |
| !! | ACATTAAATGATTGAATGTT+GGG | + | tig0015451:18706-18725 | Msa1356130:intergenic | 20.0% |
| !! | AGTAATAGTGCAAAATATTT+GGG | + | tig0015451:18804-18823 | Msa1356130:intergenic | 20.0% |
| !! | TAGTAATAGTGCAAAATATT+TGG | + | tig0015451:18805-18824 | Msa1356130:intergenic | 20.0% |
| !! | ATAATTGATAGAACTAGAAA+AGG | + | tig0015451:19181-19200 | Msa1356130:intergenic | 20.0% |
| !! | TTCACTTAAAAACTTATAGA+AGG | + | tig0015451:19272-19291 | Msa1356130:intergenic | 20.0% |
| !! | TTGCAATATGTACAAATAAT+TGG | - | tig0015451:19823-19842 | Msa1356130:CDS | 20.0% |
| !!! | GTTTGTTTCTTTTGAATTTT+AGG | - | tig0015451:20115-20134 | Msa1356130:five_prime_UTR | 20.0% |
| !!! | CTCATTCAACTTTTTTAATT+GGG | + | tig0015451:20213-20232 | Msa1356130:intergenic | 20.0% |
| !!! | TCTCATTCAACTTTTTTAAT+TGG | + | tig0015451:20214-20233 | Msa1356130:intergenic | 20.0% |
| !! | GCACAAGGTTTAATAAATTT+TGG | - | tig0015451:16541-16560 | Msa1356130:CDS | 25.0% |
| ! | GAAGAATTACAAACTTATGT+TGG | - | tig0015451:16693-16712 | Msa1356130:intron | 25.0% |
| ! | ACAAAAGATAAATGAAGATC+AGG | + | tig0015451:17092-17111 | Msa1356130:intergenic | 25.0% |
| ! | TTATGAGTTCTGTATTTGTT+GGG | - | tig0015451:17212-17231 | Msa1356130:intron | 25.0% |
| ! | ATTATGAATGTACTAAACGT+TGG | - | tig0015451:17264-17283 | Msa1356130:intron | 25.0% |
| ! | ATTCAGAATCGTAATACATT+AGG | + | tig0015451:17319-17338 | Msa1356130:intergenic | 25.0% |
| ! | TAATGTATTACGATTCTGAA+TGG | - | tig0015451:17318-17337 | Msa1356130:intron | 25.0% |
| ! | AATTCAGAGATCAATATTGT+CGG | + | tig0015451:17415-17434 | Msa1356130:intergenic | 25.0% |
| ! | GATCTCTGAATTATATCTTT+AGG | - | tig0015451:17423-17442 | Msa1356130:intron | 25.0% |
| !!! | TTAATTTGTGTGTTTTCTAC+CGG | - | tig0015451:17470-17489 | Msa1356130:intron | 25.0% |
| !! | TCCATATTATAGTTTGAGTT+GGG | + | tig0015451:17541-17560 | Msa1356130:intergenic | 25.0% |
| ! | ATCCATATTATAGTTTGAGT+TGG | + | tig0015451:17542-17561 | Msa1356130:intergenic | 25.0% |
| !! | AAAATGAGAAACAGTTGATA+GGG | + | tig0015451:17565-17584 | Msa1356130:intergenic | 25.0% |
| ! | AAAAATGAGAAACAGTTGAT+AGG | + | tig0015451:17566-17585 | Msa1356130:intergenic | 25.0% |
| !!! | GGGTTTTTAGTTAACAATAT+TGG | - | tig0015451:17681-17700 | Msa1356130:CDS | 25.0% |
| ! | TTGATTTATGAACAACACTT+AGG | - | tig0015451:17818-17837 | Msa1356130:intron | 25.0% |
| ! | ATATTAAATCATGCATGTGA+TGG | + | tig0015451:18338-18357 | Msa1356130:intergenic | 25.0% |
| !!! | TTGCATTGCTCTATTTTTTT+GGG | + | tig0015451:18387-18406 | Msa1356130:intergenic | 25.0% |
| !! | GCTTTGATTTCATTATATGA+TGG | + | tig0015451:18494-18513 | Msa1356130:intergenic | 25.0% |
| ! | GACATTAAATGATTGAATGT+TGG | + | tig0015451:18707-18726 | Msa1356130:intergenic | 25.0% |
| ! | TTCACATCTATTTGATGTAA+AGG | - | tig0015451:19035-19054 | Msa1356130:intron | 25.0% |
| ! | GAAATAATATTGCACCTATT+AGG | - | tig0015451:19070-19089 | Msa1356130:intron | 25.0% |
| !!! | TTGAGATAAGCTTTTTGATT+CGG | + | tig0015451:19121-19140 | Msa1356130:intergenic | 25.0% |
| ! | AATCAAAAAGCTTATCTCAA+GGG | - | tig0015451:19121-19140 | Msa1356130:intron | 25.0% |
| ! | TTCATGTCATATTTACTGTA+AGG | - | tig0015451:19486-19505 | Msa1356130:intron | 25.0% |
| !! | GGATAAAAACATCTTTAGAA+GGG | + | tig0015451:19547-19566 | Msa1356130:intergenic | 25.0% |
| ! | TTTAAAAACTTATAGGAGGA+AGG | + | tig0015451:19741-19760 | Msa1356130:intergenic | 25.0% |
| ! | TTCGTTTAAAAACTTATAGG+AGG | + | tig0015451:19745-19764 | Msa1356130:intergenic | 25.0% |
| ! | TTCGTGTCATATTTATTGTA+AGG | - | tig0015451:19970-19989 | Msa1356130:five_prime_UTR | 25.0% |
| !! | AGATAAAACCATCTTTAGAA+TGG | + | tig0015451:20039-20058 | Msa1356130:intergenic | 25.0% |
| ATTGTAAGTTTACATAGGTG+TGG | - | tig0015451:16497-16516 | Msa1356130:CDS | 30.0% | |
| !! | AATCTTTCTAAAGCACAACA+TGG | - | tig0015451:16584-16603 | Msa1356130:intron | 30.0% |
| !!! | GCTCAATTTTTTTGTCTACT+AGG | - | tig0015451:16715-16734 | Msa1356130:intron | 30.0% |
| AATGAGATATCATCACAAGA+AGG | - | tig0015451:16966-16985 | Msa1356130:intron | 30.0% | |
| ATGAGATATCATCACAAGAA+GGG | - | tig0015451:16967-16986 | Msa1356130:intron | 30.0% | |
| AATTCTAGTGAAGAAGGAAA+AGG | - | tig0015451:17008-17027 | Msa1356130:intron | 30.0% | |
| ATTCTAGTGAAGAAGGAAAA+GGG | - | tig0015451:17009-17028 | Msa1356130:intron | 30.0% | |
| ! | GAACTCATAAGTTGTTTCAT+TGG | + | tig0015451:17202-17221 | Msa1356130:intergenic | 30.0% |
| CTTATGAGTTCTGTATTTGT+TGG | - | tig0015451:17211-17230 | Msa1356130:intron | 30.0% | |
| ATTCAGAGATCAATATTGTC+GGG | + | tig0015451:17414-17433 | Msa1356130:intergenic | 30.0% | |
| !! | CTTTAGGAAGTAGTTCTTTT+TGG | - | tig0015451:17439-17458 | Msa1356130:intron | 30.0% |
| TCCCAACTCAAACTATAATA+TGG | - | tig0015451:17537-17556 | Msa1356130:CDS | 30.0% | |
| ATTAACTGGAGAACTAACTT+GGG | + | tig0015451:17725-17744 | Msa1356130:intergenic | 30.0% | |
| TTTAGTGTAATTATAGGCGT+CGG | + | tig0015451:17941-17960 | Msa1356130:intergenic | 30.0% | |
| AAGAAAAAGACATTCCCAAA+GGG | + | tig0015451:18144-18163 | Msa1356130:intergenic | 30.0% | |
| AAAGAAAAAGACATTCCCAA+AGG | + | tig0015451:18145-18164 | Msa1356130:intergenic | 30.0% | |
| !! | TAAGGTTCTGAAATATACCT+TGG | + | tig0015451:18252-18271 | Msa1356130:intergenic | 30.0% |
| !!! | CTTGCATTGCTCTATTTTTT+TGG | + | tig0015451:18388-18407 | Msa1356130:intergenic | 30.0% |
| CAAAAAAATAGAGCAATGCA+AGG | - | tig0015451:18386-18405 | Msa1356130:intron | 30.0% | |
| CATCACATTATGGATATGTA+TGG | - | tig0015451:18413-18432 | Msa1356130:intron | 30.0% | |
| GATATCATACCCAAACTTTA+GGG | + | tig0015451:18684-18703 | Msa1356130:intergenic | 30.0% | |
| !! | TAGTACCCTAAAGTTTTGTA+GGG | + | tig0015451:18773-18792 | Msa1356130:intergenic | 30.0% |
| !! | TTAGTACCCTAAAGTTTTGT+AGG | + | tig0015451:18774-18793 | Msa1356130:intergenic | 30.0% |
| ! | TTTTGTAGATTTCATGAGAG+TGG | - | tig0015451:18955-18974 | Msa1356130:CDS | 30.0% |
| TTTGTAGATTTCATGAGAGT+GGG | - | tig0015451:18956-18975 | Msa1356130:CDS | 30.0% | |
| !! | TGAGATAAGCTTTTTGATTC+GGG | + | tig0015451:19120-19139 | Msa1356130:intergenic | 30.0% |
| GAATCAAAAAGCTTATCTCA+AGG | - | tig0015451:19120-19139 | Msa1356130:intron | 30.0% | |
| ATCAAAAAGCTTATCTCAAG+GGG | - | tig0015451:19122-19141 | Msa1356130:intron | 30.0% | |
| GCATAAGCTTTCTTAATCAT+TGG | + | tig0015451:19416-19435 | Msa1356130:intergenic | 30.0% | |
| ATATGACATGAACCATAGTT+AGG | + | tig0015451:19478-19497 | Msa1356130:intergenic | 30.0% | |
| GGGATAAAAACATCTTTAGA+AGG | + | tig0015451:19548-19567 | Msa1356130:intergenic | 30.0% | |
| !! | AAAACCATCTTTAGAATGGA+TGG | + | tig0015451:20035-20054 | Msa1356130:intergenic | 30.0% |
| TGATACTTGAGTTTGATGTA+TGG | + | tig0015451:20171-20190 | Msa1356130:intergenic | 30.0% | |
| !! | TGAAAGAGAAAGTATTGTAC+TGG | + | tig0015451:20300-20319 | Msa1356130:intergenic | 30.0% |
| ! | TTTTCTTCGAATCGGTAAAG+AGG | + | tig0015451:16853-16872 | Msa1356130:intergenic | 35.0% |
| ! | AACGAACGTTTTCTTCGAAT+CGG | + | tig0015451:16861-16880 | Msa1356130:intergenic | 35.0% |
| ! | CATGTGATAGTGATAAGTGA+AGG | - | tig0015451:16921-16940 | Msa1356130:intron | 35.0% |
| ! | TGTTGCTTATTTCACCACAA+GGG | + | tig0015451:16947-16966 | Msa1356130:intergenic | 35.0% |
| ! | TTGTTGCTTATTTCACCACA+AGG | + | tig0015451:16948-16967 | Msa1356130:intergenic | 35.0% |
| ! | GATGTAGTATTTTCCTCTCT+TGG | - | tig0015451:17342-17361 | Msa1356130:intron | 35.0% |
| TTCAGAGATCAATATTGTCG+GGG | + | tig0015451:17413-17432 | Msa1356130:intergenic | 35.0% | |
| !!! | AGTAGTTCTTTTTGGTGTCA+TGG | - | tig0015451:17447-17466 | Msa1356130:intron | 35.0% |
| CATTAACTGGAGAACTAACT+TGG | + | tig0015451:17726-17745 | Msa1356130:intergenic | 35.0% | |
| TCTCACATTATTAACGGTGT+CGG | - | tig0015451:17972-17991 | Msa1356130:intron | 35.0% | |
| ! | ACTCATCAAGCTTTTTACTC+CGG | + | tig0015451:18225-18244 | Msa1356130:intergenic | 35.0% |
| AGTAAAAAGCTTGATGAGTC+TGG | - | tig0015451:18226-18245 | Msa1356130:CDS | 35.0% | |
| AAAATAGAGCAATGCAAGGA+AGG | - | tig0015451:18390-18409 | Msa1356130:intron | 35.0% | |
| ATGGATATGTATGGACACTT+TGG | - | tig0015451:18422-18441 | Msa1356130:intron | 35.0% | |
| ! | TATGATGGTTGTTTCAGTAG+AGG | + | tig0015451:18479-18498 | Msa1356130:intergenic | 35.0% |
| GGATATCATACCCAAACTTT+AGG | + | tig0015451:18685-18704 | Msa1356130:intergenic | 35.0% | |
| ACCATACCCTACAAAACTTT+AGG | - | tig0015451:18764-18783 | Msa1356130:intron | 35.0% | |
| CCATACCCTACAAAACTTTA+GGG | - | tig0015451:18765-18784 | Msa1356130:intron | 35.0% | |
| TTATCTCAAGGGGATGATAA+TGG | - | tig0015451:19132-19151 | Msa1356130:intron | 35.0% | |
| ! | ATGGTGCAAAACATTTTCCA+TGG | - | tig0015451:19151-19170 | Msa1356130:intron | 35.0% |
| ATTGTGTACTCAGTGAAGAT+AGG | + | tig0015451:19222-19241 | Msa1356130:intergenic | 35.0% | |
| TTCACTGAGTACACAATGTT+TGG | - | tig0015451:19225-19244 | Msa1356130:intron | 35.0% | |
| CGTTTGACAAAACCTAACTA+TGG | - | tig0015451:19463-19482 | Msa1356130:intron | 35.0% | |
| AGTTTGATTGCACAAGTAAG+TGG | - | tig0015451:19611-19630 | Msa1356130:CDS | 35.0% | |
| ! | CTTTCCATCCATTCTAAAGA+TGG | - | tig0015451:20028-20047 | Msa1356130:five_prime_UTR | 35.0% |
| TTGTGCTTGTTCCTAAGTCT+TGG | + | tig0015451:16527-16546 | Msa1356130:intergenic | 40.0% | |
| AAGACTTAGGAACAAGCACA+AGG | - | tig0015451:16526-16545 | Msa1356130:CDS | 40.0% | |
| TCACTCTTGACATCTTTGCT+AGG | + | tig0015451:16801-16820 | Msa1356130:intergenic | 40.0% | |
| GTCAAGAGTGAAAGTAGTAG+CGG | - | tig0015451:16810-16829 | Msa1356130:intron | 40.0% | |
| AGTGAAAGTAGTAGCGGTAT+CGG | - | tig0015451:16816-16835 | Msa1356130:intron | 40.0% | |
| ! | GTATTTTCCTCTCTTGGTCT+TGG | - | tig0015451:17348-17367 | Msa1356130:intron | 40.0% |
| AATATTGTCGGGGAGTTCAA+TGG | + | tig0015451:17403-17422 | Msa1356130:intergenic | 40.0% | |
| !! | GTTTGAGTTGGGACGTTAAA+AGG | + | tig0015451:17530-17549 | Msa1356130:intergenic | 40.0% |
| CTCCAGTTAATGAATGTGAG+AGG | - | tig0015451:17734-17753 | Msa1356130:CDS | 40.0% | |
| GTCCTCTCACATTCATTAAC+TGG | + | tig0015451:17739-17758 | Msa1356130:intergenic | 40.0% | |
| ACATGTGAAGAGTCATTTGC+AGG | - | tig0015451:17769-17788 | Msa1356130:intron | 40.0% | |
| TGAACAACACTTAGGAATCG+AGG | - | tig0015451:17826-17845 | Msa1356130:intron | 40.0% | |
| GCACATACACTCCTTTGATT+AGG | - | tig0015451:17883-17902 | Msa1356130:intron | 40.0% | |
| CTCACATTATTAACGGTGTC+GGG | - | tig0015451:17973-17992 | Msa1356130:intron | 40.0% | |
| ! | TCACATTATTAACGGTGTCG+GGG | - | tig0015451:17974-17993 | Msa1356130:intron | 40.0% |
| AGTTGAGAAACATGCCCTTT+GGG | - | tig0015451:18127-18146 | Msa1356130:intron | 40.0% | |
| !! | TTTTGGAGGTTCAGATGTAC+CGG | - | tig0015451:18203-18222 | Msa1356130:intron | 40.0% |
| TGCCTATTCGATGTTTCCAA+GGG | - | tig0015451:18306-18325 | Msa1356130:CDS | 40.0% | |
| AACCCTTGGAAACATCGAAT+AGG | + | tig0015451:18311-18330 | Msa1356130:intergenic | 40.0% | |
| !! | CATGTGATGGATAAAACCCT+TGG | + | tig0015451:18325-18344 | Msa1356130:intergenic | 40.0% |
| TCAAAGCTCATGACACTTCA+AGG | - | tig0015451:18507-18526 | Msa1356130:intron | 40.0% | |
| TCCATGGACATTAACTGATG+TGG | - | tig0015451:18602-18621 | Msa1356130:intron | 40.0% | |
| ACCACATCAGTTAATGTCCA+TGG | + | tig0015451:18606-18625 | Msa1356130:intergenic | 40.0% | |
| TGGACATTAACTGATGTGGT+TGG | - | tig0015451:18606-18625 | Msa1356130:intron | 40.0% | |
| ACTTCCGAACCCTAAAGTTT+GGG | - | tig0015451:18672-18691 | Msa1356130:intron | 40.0% | |
| !! | CATACCCAAACTTTAGGGTT+CGG | + | tig0015451:18679-18698 | Msa1356130:intergenic | 40.0% |
| !! | CCCTAAAGTTTTGTAGGGTA+TGG | + | tig0015451:18768-18787 | Msa1356130:intergenic | 40.0% |
| TCTTCAGATCAAGTTCAGTG+TGG | - | tig0015451:19001-19020 | Msa1356130:CDS | 40.0% | |
| CTTCAGATCAAGTTCAGTGT+GGG | - | tig0015451:19002-19021 | Msa1356130:CDS | 40.0% | |
| CTTACTTGGCTAGACCTAAT+AGG | + | tig0015451:19087-19106 | Msa1356130:intergenic | 40.0% | |
| ! | CGGGTAGTAATTGACTTACT+TGG | + | tig0015451:19101-19120 | Msa1356130:intergenic | 40.0% |
| !! | GTACACAATGTTTGGTTCTG+AGG | - | tig0015451:19233-19252 | Msa1356130:intron | 40.0% |
| ACTATATAGGGCCAACTCTA+TGG | - | tig0015451:19316-19335 | Msa1356130:intron | 40.0% | |
| ATCCTTGTGTACCATAGAGT+TGG | + | tig0015451:19330-19349 | Msa1356130:intergenic | 40.0% | |
| TTCCTTGTGCACTATTGAGT+TGG | + | tig0015451:19795-19814 | Msa1356130:intergenic | 40.0% | |
| GGTGTGGAATTCCAAGACTT+AGG | - | tig0015451:16513-16532 | Msa1356130:CDS | 45.0% | |
| CGATTTAAACGAAGAAGCCG+TGG | - | tig0015451:16884-16903 | Msa1356130:intron | 45.0% | |
| ATGATCATCTCCATCGTCCA+CGG | + | tig0015451:16904-16923 | Msa1356130:intergenic | 45.0% | |
| GTACGGTTAGGCAATATGTG+AGG | - | tig0015451:17039-17058 | Msa1356130:intron | 45.0% | |
| ATGTGAGGTCGAAAATGCCT+AGG | - | tig0015451:17054-17073 | Msa1356130:intron | 45.0% | |
| ! | CTTTTGTGCATGCTGTTGAG+AGG | - | tig0015451:17105-17124 | Msa1356130:intron | 45.0% |
| ! | GTTGTTTCATTGGTCGCCAA+AGG | + | tig0015451:17192-17211 | Msa1356130:intergenic | 45.0% |
| CAATGTTCCAAGACCAAGAG+AGG | + | tig0015451:17358-17377 | Msa1356130:intergenic | 45.0% | |
| !! | CTCTCTTGGTCTTGGAACAT+TGG | - | tig0015451:17356-17375 | Msa1356130:intron | 45.0% |
| ! | TCAGGGGGTTGATTAATGTC+CGG | + | tig0015451:17492-17511 | Msa1356130:intergenic | 45.0% |
| CATTAATCAACCCCCTGAAC+TGG | - | tig0015451:17494-17513 | Msa1356130:CDS | 45.0% | |
| !! | GTAATTATAGGCGTCGGTGT+CGG | + | tig0015451:17935-17954 | Msa1356130:intergenic | 45.0% |
| GTCAGTGTTTGTGTCGTATC+CGG | - | tig0015451:17998-18017 | Msa1356130:intron | 45.0% | |
| TGAAGCATGAGCACAAACAC+CGG | + | tig0015451:18020-18039 | Msa1356130:intergenic | 45.0% | |
| GAGTTGAGAAACATGCCCTT+TGG | - | tig0015451:18126-18145 | Msa1356130:intron | 45.0% | |
| GTGCCTATTCGATGTTTCCA+AGG | - | tig0015451:18305-18324 | Msa1356130:CDS | 45.0% | |
| !! | GCAAGGAAGGCATCACATTA+TGG | - | tig0015451:18403-18422 | Msa1356130:intron | 45.0% |
| GTTTCAGTAGAGGAGACGAT+GGG | + | tig0015451:18469-18488 | Msa1356130:intergenic | 45.0% | |
| TGTTTCAGTAGAGGAGACGA+TGG | + | tig0015451:18470-18489 | Msa1356130:intergenic | 45.0% | |
| CACTTCCGAACCCTAAAGTT+TGG | - | tig0015451:18671-18690 | Msa1356130:intron | 45.0% | |
| !! | GAACTAGAAAAGGTGCTCCA+TGG | + | tig0015451:19171-19190 | Msa1356130:intergenic | 45.0% |
| !! | CTCGACTTAGCTTTAGCTCT+AGG | + | tig0015451:20256-20275 | Msa1356130:intergenic | 45.0% |
| !!! | ATCTAATTTTTTTTTTAAAA+AGG | - | tig0015451:19691-19710 | Msa1356130:CDS | 5.0% |
| CTTCGAATCGGTAAAGAGGC+AGG | + | tig0015451:16849-16868 | Msa1356130:intergenic | 50.0% | |
| GTGATAAGTGAAGGCCCTTG+TGG | - | tig0015451:16930-16949 | Msa1356130:intron | 50.0% | |
| AGTGAAGAAGGAAAAGGGCG+TGG | - | tig0015451:17014-17033 | Msa1356130:intron | 50.0% | |
| ! | AGGAAAAGGGCGTGGAAGTA+CGG | - | tig0015451:17022-17041 | Msa1356130:intron | 50.0% |
| CGAAAATGCCTAGGCTTCGT+TGG | - | tig0015451:17063-17082 | Msa1356130:intron | 50.0% | |
| ATGCTGTTGAGAGGCTTGGA+GGG | - | tig0015451:17114-17133 | Msa1356130:intron | 50.0% | |
| AGTGTCAAGACCAGTTCAGG+GGG | + | tig0015451:17507-17526 | Msa1356130:intergenic | 50.0% | |
| GAGTGTCAAGACCAGTTCAG+GGG | + | tig0015451:17508-17527 | Msa1356130:intergenic | 50.0% | |
| ! | GGAGTGTCAAGACCAGTTCA+GGG | + | tig0015451:17509-17528 | Msa1356130:intergenic | 50.0% |
| !! | AGGAGTGTCAAGACCAGTTC+AGG | + | tig0015451:17510-17529 | Msa1356130:intergenic | 50.0% |
| ACTGGGACACGCCTAATCAA+AGG | + | tig0015451:17897-17916 | Msa1356130:intergenic | 50.0% | |
| AAGCTTGATGAGTCTGGCCA+AGG | - | tig0015451:18232-18251 | Msa1356130:CDS | 50.0% | |
| GGCCAACTCTATGGTACACA+AGG | - | tig0015451:19325-19344 | Msa1356130:intron | 50.0% | |
| GGCCAACTCAATAGTGCACA+AGG | - | tig0015451:19790-19809 | Msa1356130:CDS | 50.0% | |
| AACGAAGAAGCCGTGGACGA+TGG | - | tig0015451:16891-16910 | Msa1356130:intron | 55.0% | |
| ! | AAGGGCGTGGAAGTACGGTT+AGG | - | tig0015451:17027-17046 | Msa1356130:intron | 55.0% |
| TCAGGAGTCCAACGAAGCCT+AGG | + | tig0015451:17074-17093 | Msa1356130:intergenic | 55.0% | |
| GTGCATGCTGTTGAGAGGCT+TGG | - | tig0015451:17110-17129 | Msa1356130:intron | 55.0% | |
| CATGCTGTTGAGAGGCTTGG+AGG | - | tig0015451:17113-17132 | Msa1356130:intron | 55.0% | |
| GATTAGGCGTGTCCCAGTGT+TGG | - | tig0015451:17899-17918 | Msa1356130:intron | 55.0% | |
| GGACACACGTGTCCAACACT+GGG | + | tig0015451:17914-17933 | Msa1356130:intergenic | 55.0% | |
| CGGACACACGTGTCCAACAC+TGG | + | tig0015451:17915-17934 | Msa1356130:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015451 | gene | 16386 | 20349 | 16386 | ID=Msa1356130;Name=Msa1356130 |
| tig0015451 | mRNA | 16386 | 20349 | 16386 | ID=Msa1356130-mRNA-1;Parent=Msa1356130;Name=Msa1356130-mRNA-1;_AED=0.07;_eAED=0.07;_QI=394|1|0.66|1|0.8|1|6|0|377 |
| tig0015451 | exon | 16386 | 16598 | 16386 | ID=Msa1356130-mRNA-1:exon:9764;Parent=Msa1356130-mRNA-1 |
| tig0015451 | exon | 17481 | 17772 | 17481 | ID=Msa1356130-mRNA-1:exon:9763;Parent=Msa1356130-mRNA-1 |
| tig0015451 | exon | 18207 | 18357 | 18207 | ID=Msa1356130-mRNA-1:exon:9762;Parent=Msa1356130-mRNA-1 |
| tig0015451 | exon | 18482 | 18518 | 18482 | ID=Msa1356130-mRNA-1:exon:9761;Parent=Msa1356130-mRNA-1 |
| tig0015451 | exon | 18945 | 19021 | 18945 | ID=Msa1356130-mRNA-1:exon:9760;Parent=Msa1356130-mRNA-1 |
| tig0015451 | exon | 19592 | 20349 | 19592 | ID=Msa1356130-mRNA-1:exon:9759;Parent=Msa1356130-mRNA-1 |
| tig0015451 | five_prime_UTR | 19956 | 20349 | 19956 | ID=Msa1356130-mRNA-1:five_prime_utr;Parent=Msa1356130-mRNA-1 |
| tig0015451 | CDS | 19592 | 19955 | 19592 | ID=Msa1356130-mRNA-1:cds;Parent=Msa1356130-mRNA-1 |
| tig0015451 | CDS | 18945 | 19021 | 18945 | ID=Msa1356130-mRNA-1:cds;Parent=Msa1356130-mRNA-1 |
| tig0015451 | CDS | 18482 | 18518 | 18482 | ID=Msa1356130-mRNA-1:cds;Parent=Msa1356130-mRNA-1 |
| tig0015451 | CDS | 18207 | 18357 | 18207 | ID=Msa1356130-mRNA-1:cds;Parent=Msa1356130-mRNA-1 |
| tig0015451 | CDS | 17481 | 17772 | 17481 | ID=Msa1356130-mRNA-1:cds;Parent=Msa1356130-mRNA-1 |
| tig0015451 | CDS | 16386 | 16598 | 16386 | ID=Msa1356130-mRNA-1:cds;Parent=Msa1356130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
