AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0400010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0400010 MtrunA17_Chr3g0088441 97.736 530 12 0 1 530 1 530 0.0 1077
Msa0400010 MtrunA17_Chr4g0033311 87.382 531 66 1 1 530 1 531 0.0 986
Msa0400010 MtrunA17_Chr4g0033321 71.567 517 143 2 5 521 4 516 0.0 801
Msa0400010 MtrunA17_Chr4g0033331 74.291 494 126 1 25 518 27 519 0.0 799
Msa0400010 MtrunA17_Chr4g0033401 74.044 497 128 1 25 521 22 517 0.0 797
Msa0400010 MtrunA17_Chr2g0329201 72.840 486 132 0 29 514 22 507 0.0 763
Msa0400010 MtrunA17_Chr2g0329191 69.216 510 155 2 6 514 1 509 0.0 751
Msa0400010 MtrunA17_Chr6g0482131 68.627 510 159 1 8 516 5 514 0.0 750
Msa0400010 MtrunA17_Chr6g0482071 67.251 513 166 1 3 515 4 514 0.0 728
Msa0400010 MtrunA17_Chr4g0033341 67.331 502 160 2 14 514 45 543 0.0 724
Msa0400010 MtrunA17_Chr4g0033271 66.406 512 166 2 3 514 6 511 0.0 723
Msa0400010 MtrunA17_Chr4g0033191 66.129 496 168 0 22 517 27 522 0.0 723
Msa0400010 MtrunA17_Chr4g0033201 64.844 512 177 1 3 514 4 512 0.0 721
Msa0400010 MtrunA17_Chr6g0482081 66.154 520 165 5 1 515 1 514 0.0 704
Msa0400010 MtrunA17_Chr2g0329321 67.078 486 134 1 29 514 29 488 0.0 697
Msa0400010 MtrunA17_Chr4g0033261 60.577 520 174 3 1 515 1 494 0.0 650
Msa0400010 MtrunA17_Chr4g0033231 60.120 499 167 3 23 515 22 494 0.0 631
Msa0400010 MtrunA17_Chr5g0430451 61.069 524 168 3 1 514 1 498 0.0 629
Msa0400010 MtrunA17_Chr4g0010501 58.149 497 202 3 18 514 4 494 0.0 603
Msa0400010 MtrunA17_Chr4g0006111 56.187 493 176 7 34 514 61 525 0.0 557
Msa0400010 MtrunA17_Chr3g0087261 54.510 510 223 6 6 514 8 509 0.0 556
Msa0400010 MtrunA17_Chr4g0006131 55.837 514 180 10 15 513 19 500 0.0 548
Msa0400010 MtrunA17_Chr3g0087271 53.229 511 233 4 4 514 6 510 0.0 546
Msa0400010 MtrunA17_Chr4g0043091 51.935 491 226 6 27 513 18 502 0.0 525
Msa0400010 MtrunA17_Chr4g0042171 49.795 488 239 4 32 516 18 502 5.83e-169 488
Msa0400010 MtrunA17_Chr6g0482941 48.031 508 256 6 8 515 14 513 1.33e-165 479
Msa0400010 MtrunA17_Chr6g0482951 47.184 515 256 7 1 515 15 513 2.57e-163 473
Msa0400010 MtrunA17_Chr2g0301231 57.041 419 143 6 106 514 1 392 6.65e-163 468
Msa0400010 MtrunA17_Chr3g0090111 46.694 484 234 7 38 516 19 483 2.13e-156 455
Msa0400010 MtrunA17_Chr4g0074561 45.547 494 251 6 43 526 40 525 3.62e-155 453
Msa0400010 MtrunA17_Chr3g0090131 46.250 480 243 6 35 513 18 483 7.38e-155 451
Msa0400010 MtrunA17_Chr2g0317841 46.555 479 245 6 38 512 32 503 8.98e-153 447
Msa0400010 MtrunA17_Chr2g0317821 47.182 479 242 6 38 512 32 503 1.30e-152 447
Msa0400010 MtrunA17_Chr2g0288071 45.211 522 265 7 6 524 49 552 4.26e-151 444
Msa0400010 MtrunA17_Chr4g0074551 46.526 475 248 5 43 515 55 525 3.10e-149 439
Msa0400010 MtrunA17_Chr2g0288021 45.041 484 260 5 37 518 34 513 1.75e-144 426
Msa0400010 MtrunA17_Chr7g0242691 44.606 482 249 7 37 515 30 496 6.08e-144 424
Msa0400010 MtrunA17_Chr7g0242681 45.041 484 237 9 38 513 38 500 2.14e-142 421
Msa0400010 MtrunA17_Chr4g0006971 43.902 492 258 7 37 525 26 502 4.62e-141 417
Msa0400010 MtrunA17_Chr5g0428831 44.082 490 245 10 32 513 21 489 1.35e-139 413
Msa0400010 MtrunA17_Chr3g0087201 57.958 333 135 2 182 514 17 344 6.37e-138 402
Msa0400010 MtrunA17_Chr1g0195611 42.105 513 260 9 8 513 6 488 3.40e-136 404
Msa0400010 MtrunA17_Chr7g0234111 43.724 478 249 6 39 515 76 534 4.00e-123 371
Msa0400010 MtrunA17_Chr5g0418871 55.853 299 129 2 57 355 2 297 8.20e-123 363
Msa0400010 MtrunA17_Chr7g0234091 42.739 482 252 7 39 517 76 536 4.16e-122 369
Msa0400010 MtrunA17_Chr7g0234131 41.875 480 250 7 39 512 76 532 1.07e-117 357
Msa0400010 MtrunA17_Chr1g0195641 47.059 391 186 8 40 424 29 404 1.62e-117 353
Msa0400010 MtrunA17_Chr7g0230651 45.777 367 183 5 93 459 26 376 6.97e-100 306
Msa0400010 MtrunA17_Chr3g0087191 68.707 147 46 0 35 181 19 165 2.72e-72 228
Msa0400010 MtrunA17_Chr7g0236731 47.009 234 117 2 127 359 28 255 3.27e-60 200
Msa0400010 MtrunA17_Chr7g0227561 39.706 272 125 5 40 308 48 283 1.19e-58 196
Msa0400010 MtrunA17_Chr4g0068871 26.392 413 223 13 102 504 183 524 1.06e-27 117
Msa0400010 MtrunA17_Chr5g0418861 48.889 90 45 1 424 512 1 90 5.67e-24 95.9
Msa0400010 MtrunA17_Chr8g0352881 38.843 121 64 1 249 359 32 152 1.24e-23 97.4
Msa0400010 MtrunA17_Chr8g0352881 50.000 70 34 1 47 116 7 75 1.32e-14 71.6
Msa0400010 MtrunA17_Chr2g0288031 50.847 59 28 1 189 247 3 60 2.38e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0400010 AT2G44480.1 56.939 490 208 2 25 512 20 508 0.0 593
Msa0400010 AT2G44480.3 57.652 477 201 1 36 512 64 539 0.0 593
Msa0400010 AT5G44640.1 54.688 512 220 4 7 517 6 506 0.0 584
Msa0400010 AT5G42260.1 56.064 503 209 4 7 508 6 497 0.0 583
Msa0400010 AT2G44450.1 57.113 478 200 2 38 515 31 503 0.0 577
Msa0400010 AT3G60130.1 55.975 477 204 3 38 513 30 501 0.0 558
Msa0400010 AT2G25630.1 54.832 476 192 4 38 512 30 483 0.0 540
Msa0400010 AT5G24550.1 52.033 492 223 6 38 521 32 518 0.0 528
Msa0400010 AT3G60140.1 49.489 489 243 4 29 514 17 504 0.0 522
Msa0400010 AT1G51470.1 52.381 483 216 7 34 514 41 511 0.0 522
Msa0400010 AT1G47600.1 51.346 483 221 7 34 514 41 511 1.70e-178 512
Msa0400010 AT1G47600.2 51.346 483 220 7 34 514 41 510 6.99e-178 511
Msa0400010 AT5G24540.1 49.518 519 247 7 9 519 5 516 5.96e-177 509
Msa0400010 AT3G60120.1 51.240 484 225 7 37 514 13 491 5.90e-176 507
Msa0400010 AT2G44480.2 55.718 411 181 1 106 516 1 410 8.31e-176 502
Msa0400010 AT2G44490.1 50.622 482 232 5 37 513 13 493 1.69e-175 506
Msa0400010 AT2G44470.3 48.958 480 241 4 38 514 29 507 2.59e-175 507
Msa0400010 AT1G26560.1 49.087 493 231 5 30 512 24 506 7.27e-175 503
Msa0400010 AT5G54570.1 50.520 481 229 4 37 512 29 505 1.03e-170 493
Msa0400010 AT3G18080.1 50.412 486 233 6 33 517 34 512 8.16e-170 490
Msa0400010 AT2G44460.1 49.187 492 245 5 34 522 25 514 1.44e-169 492
Msa0400010 AT5G25980.2 46.679 527 270 9 6 528 19 538 2.62e-167 485
Msa0400010 AT3G60130.2 54.762 420 184 3 95 513 35 449 9.67e-166 478
Msa0400010 AT3G18070.3 46.914 486 242 7 33 517 25 495 2.16e-160 466
Msa0400010 AT3G18070.1 46.914 486 248 7 33 517 25 501 1.87e-159 463
Msa0400010 AT3G60130.3 53.571 420 178 4 95 513 35 438 2.27e-158 459
Msa0400010 AT3G09260.1 46.488 484 252 6 38 517 35 515 3.72e-156 456
Msa0400010 AT5G36890.2 47.808 479 237 4 40 517 18 484 5.57e-156 454
Msa0400010 AT5G36890.1 47.808 479 237 4 40 517 18 484 7.32e-156 454
Msa0400010 AT3G03640.1 45.455 484 258 4 36 514 32 514 1.13e-154 452
Msa0400010 AT1G75940.1 47.239 489 246 8 38 517 37 522 1.15e-154 452
Msa0400010 AT3G21370.1 46.708 486 245 8 37 513 32 512 1.18e-154 452
Msa0400010 AT2G32860.1 45.248 484 260 5 37 516 93 575 1.16e-150 445
Msa0400010 AT5G26000.1 45.087 519 262 11 7 512 3 511 1.95e-150 442
Msa0400010 AT5G28510.1 45.436 493 257 7 29 512 30 519 1.29e-149 439
Msa0400010 AT2G32860.2 44.628 484 264 4 37 516 93 576 3.83e-149 441
Msa0400010 AT2G44470.1 47.281 423 220 3 38 458 29 450 4.34e-149 435
Msa0400010 AT1G66280.1 47.485 497 243 11 26 512 22 510 9.80e-149 437
Msa0400010 AT1G66270.1 45.759 507 262 9 24 523 21 521 2.09e-148 436
Msa0400010 AT5G54570.3 50.000 426 205 3 37 458 29 450 2.41e-148 433
Msa0400010 AT5G24540.2 50.472 424 206 4 38 458 32 454 6.80e-148 432
Msa0400010 AT1G52400.3 43.100 529 275 12 1 515 2 518 8.48e-148 435
Msa0400010 AT1G52400.1 43.100 529 275 12 1 515 2 518 8.48e-148 435
Msa0400010 AT1G02850.2 46.377 483 238 9 35 513 21 486 9.52e-146 428
Msa0400010 AT1G66270.2 45.365 507 262 10 24 523 21 519 7.80e-145 427
Msa0400010 AT3G60140.2 48.111 397 203 3 29 423 17 412 2.93e-144 423
Msa0400010 AT5G25980.3 46.711 456 234 7 6 459 19 467 1.48e-143 422
Msa0400010 AT5G25980.1 46.711 456 234 7 6 459 19 467 1.48e-143 422
Msa0400010 AT1G61820.1 43.967 489 268 6 33 518 25 510 8.01e-143 421
Msa0400010 AT1G61810.1 44.864 477 257 5 43 516 38 511 2.22e-142 421
Msa0400010 AT4G27830.1 44.306 483 248 7 34 512 19 484 5.59e-142 419
Msa0400010 AT4G21760.2 42.278 518 286 7 3 518 21 527 2.58e-141 419
Msa0400010 AT5G54570.2 50.000 412 197 4 106 512 1 408 3.04e-141 415
Msa0400010 AT1G02850.5 44.466 506 237 10 35 513 21 509 4.09e-141 417
Msa0400010 AT2G44450.2 54.342 357 158 2 159 515 1 352 3.25e-140 409
Msa0400010 AT1G02850.4 44.773 507 235 11 35 513 21 510 5.81e-140 414
Msa0400010 AT2G44480.4 60.000 315 123 2 25 337 51 364 1.66e-138 406
Msa0400010 AT1G61810.3 44.946 465 248 5 43 501 38 500 1.83e-137 409
Msa0400010 AT1G60090.2 43.004 486 253 8 38 519 24 489 3.70e-137 407
Msa0400010 AT4G21760.1 41.860 516 281 8 3 518 21 517 5.25e-135 402
Msa0400010 AT1G02850.1 44.928 483 218 10 35 513 21 459 8.78e-135 399
Msa0400010 AT4G27820.1 44.792 480 242 7 37 512 22 482 1.20e-134 400
Msa0400010 AT1G60090.1 41.633 490 261 9 38 519 24 496 2.18e-133 397
Msa0400010 AT4G22100.1 42.769 484 255 9 40 519 24 489 3.67e-133 396
Msa0400010 AT5G26000.2 44.828 464 235 9 7 459 3 456 1.03e-131 391
Msa0400010 AT3G62750.1 42.531 482 245 8 35 512 20 473 1.82e-131 392
Msa0400010 AT3G62750.2 41.586 517 267 10 3 512 11 499 3.51e-131 392
Msa0400010 AT1G45191.4 41.935 496 258 10 39 530 30 499 2.07e-128 384
Msa0400010 AT2G44470.2 49.552 335 167 2 38 371 29 362 5.54e-127 377
Msa0400010 AT1G45191.2 41.532 496 266 10 39 530 30 505 1.52e-126 380
Msa0400010 AT1G45191.6 41.247 497 271 9 39 530 30 510 1.06e-125 378
Msa0400010 AT1G52400.2 42.887 471 244 11 1 458 2 460 5.52e-125 374
Msa0400010 AT1G45191.1 40.828 507 271 10 39 530 30 522 1.69e-123 372
Msa0400010 AT3G62740.1 39.627 482 264 9 35 512 20 478 5.19e-122 368
Msa0400010 AT1G02850.3 46.135 414 188 7 35 423 21 424 6.97e-121 362
Msa0400010 AT1G61810.5 44.282 411 223 5 109 516 4 411 1.12e-116 351
Msa0400010 AT2G44460.2 49.593 369 182 4 157 522 1 368 1.06e-115 349
Msa0400010 AT5G48375.1 42.857 441 184 7 38 477 38 411 5.14e-115 348
Msa0400010 AT3G62750.4 41.075 465 240 9 3 461 11 447 4.09e-114 346
Msa0400010 AT1G61810.4 44.792 384 207 4 43 423 38 419 2.68e-113 343
Msa0400010 AT1G51490.1 49.857 349 158 7 45 390 27 361 4.88e-113 342
Msa0400010 AT2G44480.5 51.325 302 146 1 215 516 6 306 1.65e-111 334
Msa0400010 AT4G27830.2 42.579 411 217 6 106 512 1 396 2.94e-110 335
Msa0400010 AT3G18070.4 48.615 325 161 4 33 357 25 343 1.41e-109 332
Msa0400010 AT3G62750.7 45.748 341 165 5 35 371 20 344 5.92e-107 324
Msa0400010 AT3G62750.8 45.748 341 165 5 35 371 20 344 5.92e-107 324
Msa0400010 AT3G62740.2 39.813 427 231 8 35 458 20 423 1.82e-106 325
Msa0400010 AT1G45191.5 47.649 319 159 3 39 357 30 340 4.57e-106 323
Msa0400010 AT3G62750.3 45.455 341 166 4 35 371 46 370 4.74e-106 324
Msa0400010 AT1G45191.3 47.649 319 159 3 39 357 30 340 5.58e-106 323
Msa0400010 AT1G60270.1 45.821 347 177 5 38 381 24 362 7.40e-106 322
Msa0400010 AT4G27820.2 42.579 411 218 6 106 512 1 397 8.35e-103 315
Msa0400010 AT4G27820.3 42.579 411 218 6 106 512 1 397 8.35e-103 315
Msa0400010 AT3G18070.2 46.364 330 172 4 189 517 99 424 3.71e-102 314
Msa0400010 AT3G18070.2 50.000 68 33 1 33 100 25 91 3.44e-15 78.2
Msa0400010 AT1G61820.3 43.243 370 205 5 152 518 4 371 5.09e-102 312
Msa0400010 AT3G62750.6 39.903 411 220 7 106 512 1 388 2.95e-98 303
Msa0400010 AT3G62750.5 39.903 411 220 7 106 512 1 388 2.95e-98 303
Msa0400010 AT3G18070.7 45.886 316 166 4 203 517 1 312 2.29e-96 295
Msa0400010 AT1G61810.2 51.698 265 126 2 43 307 38 300 4.77e-93 286
Msa0400010 AT1G60270.2 45.126 277 145 4 108 381 3 275 1.86e-77 246
Msa0400010 AT3G18070.5 45.570 237 127 2 190 425 100 335 2.77e-68 224
Msa0400010 AT3G18070.5 50.000 68 33 1 33 100 25 91 1.71e-15 78.6
Msa0400010 AT3G18070.6 44.643 224 122 2 203 425 1 223 6.73e-63 206
Msa0400010 AT5G16580.1 36.093 302 160 8 178 469 21 299 2.12e-50 175
Msa0400010 AT3G06510.2 27.865 445 230 19 101 513 159 544 3.05e-28 119
Msa0400010 AT3G06510.1 26.761 426 225 15 101 513 159 510 9.46e-28 117

Find 111 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGCAGAACTTTGCTTTA+AGG 0.085798 3_2:+23866803 Msa0400010:CDS
GTTGATTGATTACAGGTTTA+TGG 0.107499 3_2:+23867542 Msa0400010:intron
TATATATACCAGGATATTTA+TGG 0.135970 3_2:-23865824 None:intergenic
GAACTTTGCTTTAAGGAATT+TGG 0.144947 3_2:+23866810 Msa0400010:CDS
CAATTTCATCAACGAGTTAT+TGG 0.173141 3_2:+23866489 Msa0400010:CDS
TTCCCCAAAGGATTTATATT+TGG 0.190969 3_2:+23865482 Msa0400010:CDS
TTGATTTACATCACTGAAAA+TGG 0.211288 3_2:+23868082 Msa0400010:CDS
GAATCACCACCGGTACAATT+TGG 0.249774 3_2:-23866939 None:intergenic
TAGCTACTTGACAGATTCTT+TGG 0.267402 3_2:+23867740 Msa0400010:CDS
AGCGGCTTTCTGATCGGATT+TGG 0.284454 3_2:-23867269 None:intergenic
GAAACTCAAAAGGGTGTAAT+AGG 0.287265 3_2:+23867205 Msa0400010:CDS
TGGGAAACCTATTGGTATTA+AGG 0.303617 3_2:+23867891 Msa0400010:CDS
ATGGTAGAACACCGAGTATA+TGG 0.327776 3_2:+23865790 Msa0400010:CDS
TGCTCCAAATATAAATCCTT+TGG 0.329647 3_2:-23865486 None:intergenic
CCATGGAGTTACAGTCAAAA+TGG 0.331262 3_2:+23866867 Msa0400010:CDS
TTGGTGATAGAGTGAAATAT+TGG 0.342182 3_2:+23866829 Msa0400010:CDS
TTTATTTATGATTAGTTTGA+AGG 0.349443 3_2:+23865753 Msa0400010:intron
GCTCCAAATATAAATCCTTT+GGG 0.358972 3_2:-23865485 None:intergenic
GCACAAGTGCAAAAGCAATT+AGG 0.372097 3_2:-23865379 None:intergenic
TGGTAGTGCGTGACAATATA+GGG 0.377896 3_2:-23866972 None:intergenic
CACCAGGTCGTTGTTCTAGT+TGG 0.391277 3_2:+23866910 Msa0400010:CDS
ATCAACGAGTTATTGGCTAA+TGG 0.391833 3_2:+23866496 Msa0400010:CDS
TCGGGTTATTCCGTGAGATT+TGG 0.395849 3_2:+23868488 Msa0400010:CDS
ATATATACCAGGATATTTAT+GGG 0.397892 3_2:-23865823 None:intergenic
CTTTGTCTTGTACACATTGA+CGG 0.398620 3_2:-23867015 None:intergenic
TTGGTAGTGCGTGACAATAT+AGG 0.399199 3_2:-23866973 None:intergenic
CTTGTACACATTGACGGCTT+CGG 0.403989 3_2:-23867009 None:intergenic
ACATTTGTGGATTACAAGAA+TGG 0.418146 3_2:+23868515 Msa0400010:CDS
AAGTGTCCAGGAGCGATTCT+TGG 0.419746 3_2:-23868262 None:intergenic
GATAATATAGATGACGATAA+TGG 0.420645 3_2:-23868298 None:intergenic
GAATAACCTTGGTAGCTAAC+TGG 0.426224 3_2:+23867227 Msa0400010:CDS
AGCAAAGTTCTGCATAGTCT+TGG 0.429056 3_2:-23866797 None:intergenic
TGGTGATAGAGTGAAATATT+GGG 0.433375 3_2:+23866830 Msa0400010:CDS
ACATGTGCAGGAAACTCAAA+AGG 0.438105 3_2:+23867195 Msa0400010:intron
TAATTGCAGTTGAGCGAAAT+GGG 0.439736 3_2:+23867872 Msa0400010:intron
GGATAATCTCCTGTTGTAAG+TGG 0.441211 3_2:-23867567 None:intergenic
TTAATTGCAGTTGAGCGAAA+TGG 0.450417 3_2:+23867871 Msa0400010:intron
TTTATGGATCCACTTACAAC+AGG 0.454541 3_2:+23867558 Msa0400010:CDS
GAGCGAAATGGGAAACCTAT+TGG 0.456595 3_2:+23867883 Msa0400010:CDS
TTATGCAGATTGCTTCTGAT+TGG 0.460654 3_2:+23867993 Msa0400010:intron
TTTCAGTGATGTAAATCAAC+GGG 0.461224 3_2:-23868078 None:intergenic
AGTCAAAATGGCTATGCAAA+TGG 0.462239 3_2:+23866879 Msa0400010:CDS
AAAGGATTTATATTTGGAGC+AGG 0.463085 3_2:+23865488 Msa0400010:CDS
GGTCTAGCATTGCTTAGAAA+TGG 0.463232 3_2:-23867717 None:intergenic
TGACGTACCTTAATACCAAT+AGG 0.465150 3_2:-23867898 None:intergenic
CAAGCTTTAGAAGATGAGTA+TGG 0.466616 3_2:+23866651 Msa0400010:CDS
TGTGTACAAGACAAAGTATC+AGG 0.470745 3_2:+23867022 Msa0400010:CDS
CATACAGATTCTCCTTATCC+TGG 0.474985 3_2:+23866301 Msa0400010:CDS
AAAAGCATGAGATCCCTTGT+TGG 0.489756 3_2:+23867591 Msa0400010:CDS
TCCATAATAGAAGGAAAGCT+TGG 0.491667 3_2:+23866430 Msa0400010:intron
GAGATTTGGAATGACATTTG+TGG 0.496815 3_2:+23868502 Msa0400010:CDS
ATCGGTCCAAGAATCGCTCC+TGG 0.505410 3_2:+23868256 Msa0400010:CDS
TCTTTCAGCGGCTTTCTGAT+CGG 0.508451 3_2:-23867275 None:intergenic
TACTCATCTTCTAAAGCTTG+TGG 0.509391 3_2:-23866648 None:intergenic
ACGTCCAAGGATATTACATA+TGG 0.509867 3_2:+23868438 Msa0400010:CDS
CAAAAGCAATTAGGCAGAGA+AGG 0.515479 3_2:-23865370 None:intergenic
ACTCATCTTCTAAAGCTTGT+GGG 0.518122 3_2:-23866647 None:intergenic
AATCATCAAGGATATGAACT+TGG 0.522377 3_2:+23866275 Msa0400010:CDS
AGGACCATATGTAATATCCT+TGG 0.529150 3_2:-23868442 None:intergenic
CTTCGGCATGAGCTAGAAGT+TGG 0.529575 3_2:-23866992 None:intergenic
GTAATTAATTACCTGGTATG+AGG 0.530752 3_2:-23865516 None:intergenic
ATTTGGAATCTGAGAGTGGC+AGG 0.533648 3_2:-23867252 None:intergenic
CAATATTCTAGACCAGGATA+AGG 0.535004 3_2:-23866313 None:intergenic
AGCAGGATCTTCCTCATACC+AGG 0.542249 3_2:+23865505 Msa0400010:CDS
AAAGAATCTGTCAAGTAGCT+AGG 0.542781 3_2:-23867738 None:intergenic
ACTTTCACCCATAAATATCC+TGG 0.544439 3_2:+23865816 Msa0400010:CDS
AATCAATTCGAAAAGTGTCC+AGG 0.544593 3_2:-23868274 None:intergenic
AGAGCTGTCGACTTCATGTA+TGG 0.545221 3_2:+23867295 Msa0400010:CDS
TGGTAGAACACCGAGTATAT+GGG 0.547624 3_2:+23865791 Msa0400010:CDS
AATTCAATGCAAAACAAGCT+AGG 0.547970 3_2:+23867628 Msa0400010:CDS
TTGGTAATCTTGCTCCAACA+AGG 0.556284 3_2:-23867605 None:intergenic
AAACAAGCTAGGCTACTCAT+TGG 0.560590 3_2:+23867639 Msa0400010:CDS
TGGTAATCTTGCTCCAACAA+GGG 0.565723 3_2:-23867604 None:intergenic
GCAAATGGACGAATGGCACC+AGG 0.570578 3_2:+23866894 Msa0400010:CDS
CTGTCGACTTCATGTATGGA+TGG 0.573667 3_2:+23867299 Msa0400010:CDS
TGGTTGAATCCAAATTGTAC+CGG 0.574157 3_2:+23866930 Msa0400010:CDS
GGAAGATGTTAGAATCATCA+AGG 0.575017 3_2:+23866263 Msa0400010:intron
AATGAAGCAACATCAAGAAG+TGG 0.577727 3_2:-23865446 None:intergenic
GTAGTTGTGATATGAATCAA+TGG 0.582026 3_2:-23865991 None:intergenic
AGTAGAAACAGTTTCCCCAA+AGG 0.582354 3_2:+23865470 Msa0400010:CDS
TTGGAAACTCACACTATGAG+AGG 0.585684 3_2:-23866687 None:intergenic
GAAGGTGCAGCAAATGAAGA+TGG 0.586621 3_2:+23865771 Msa0400010:CDS
AGATAGAAGCAATGCAGATG+TGG 0.586765 3_2:+23865968 Msa0400010:CDS
GTACAGTGATCCTACACTAT+CGG 0.588636 3_2:+23868238 Msa0400010:CDS
ATAATAGAAGGAAAGCTTGG+TGG 0.588790 3_2:+23866433 Msa0400010:intron
TGGCTATGCAAATGGACGAA+TGG 0.589653 3_2:+23866887 Msa0400010:CDS
GCTTAGAAATGGTGCATCTG+AGG 0.591574 3_2:-23867706 None:intergenic
ATAGAAGGAAAGCTTGGTGG+TGG 0.595097 3_2:+23866436 Msa0400010:intron
AAATGTCATTCCAAATCTCA+CGG 0.598464 3_2:-23868498 None:intergenic
CTCCAAATATAAATCCTTTG+GGG 0.598486 3_2:-23865484 None:intergenic
ACGAGAAACTTTCTGCGCTG+TGG 0.609827 3_2:+23868549 Msa0400010:CDS
GGTGGTGGTATAAATCAAGA+AGG 0.611882 3_2:+23866451 Msa0400010:CDS
CATGTGCAGGAAACTCAAAA+GGG 0.617698 3_2:+23867196 Msa0400010:intron
CAGGTACCAGTTAGCTACCA+AGG 0.618729 3_2:-23867233 None:intergenic
ACTTGGCAATATTCTAGACC+AGG 0.618905 3_2:-23866319 None:intergenic
AGAAGATCACGAATTCCTCT+CGG 0.618923 3_2:-23868028 None:intergenic
GGGTTACTTTGAATGAACCA+TGG 0.621045 3_2:+23866850 Msa0400010:CDS
GCTTTAGAAGATGAGTATGG+TGG 0.623267 3_2:+23866654 Msa0400010:CDS
AGGCAAGGTGCAAACGTCCA+AGG 0.624303 3_2:+23868425 Msa0400010:intron
CCATTCAAAATTGTCGAACA+AGG 0.625604 3_2:-23868462 None:intergenic
TGGTTGTATGTTTATCCGAG+AGG 0.627108 3_2:+23868013 Msa0400010:CDS
GGGTGTAATAGGAATAACCT+TGG 0.642396 3_2:+23867216 Msa0400010:CDS
TGATCTTCTGTTGTACACCA+AGG 0.645062 3_2:+23868042 Msa0400010:CDS
CTCAATCGCAGAATCACCAC+CGG 0.647712 3_2:-23866949 None:intergenic
GAAGTCGACAGCTCTTTCAG+CGG 0.650445 3_2:-23867287 None:intergenic
GTGAAAGTATCCCATATACT+CGG 0.651676 3_2:-23865801 None:intergenic
TGATTCATATCACAACTACA+AGG 0.653125 3_2:+23865995 Msa0400010:CDS
GATTCTTGGACCGATAGTGT+AGG 0.670328 3_2:-23868248 None:intergenic
TCGGATTTGGAATCTGAGAG+TGG 0.684688 3_2:-23867256 None:intergenic
TTGAATCCAAATTGTACCGG+TGG 0.691051 3_2:+23866933 Msa0400010:CDS
AACCAACTAGAACAACGACC+TGG 0.698527 3_2:-23866912 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATTGTCAATAATTTT+AGG + chr3_2:23866588-23866607 Msa0400010:intron 10.0%
!!! TTTATTTATGATTAGTTTGA+AGG + chr3_2:23865753-23865772 Msa0400010:intron 15.0%
!!! GTAAATTTTATATATATACC+AGG - chr3_2:23865837-23865856 None:intergenic 15.0%
!!! TTGTTGTTCATATATATTAT+AGG + chr3_2:23866242-23866261 Msa0400010:intron 15.0%
!! TTATCAATATTAAACTTACT+TGG - chr3_2:23866339-23866358 None:intergenic 15.0%
!! ATGTACAAAAGATAAAAATA+TGG + chr3_2:23867407-23867426 Msa0400010:intron 15.0%
!!! TAAAAATATGGATTAACATT+AGG + chr3_2:23867419-23867438 Msa0400010:intron 15.0%
!!! AAAAATATGGATTAACATTA+GGG + chr3_2:23867420-23867439 Msa0400010:intron 15.0%
!!! ATCAACTTTTGATTAATATT+TGG - chr3_2:23867528-23867547 None:intergenic 15.0%
!! ACTAAATCTAATATAAAGTT+AGG - chr3_2:23868116-23868135 None:intergenic 15.0%
!!! CTCATTTTAAATCATCAAAT+TGG - chr3_2:23865543-23865562 None:intergenic 20.0%
!! ATATATACCAGGATATTTAT+GGG - chr3_2:23865826-23865845 None:intergenic 20.0%
!! TATATATACCAGGATATTTA+TGG - chr3_2:23865827-23865846 None:intergenic 20.0%
!!! GTAATATTGATTTTGTGTTT+AGG + chr3_2:23866198-23866217 Msa0400010:intron 20.0%
!! AACTATTTATCCATAATAGA+AGG + chr3_2:23866421-23866440 Msa0400010:intron 20.0%
!! ATCATCAAGAACAAAATATA+AGG - chr3_2:23866565-23866584 None:intergenic 20.0%
!!! AATTTTAGGTATAAAACCAT+TGG + chr3_2:23866602-23866621 Msa0400010:intron 20.0%
!!! AACATTAAGCTATATTGTTT+TGG - chr3_2:23866709-23866728 None:intergenic 20.0%
!! TTCTATTTAAAGACACTAAA+CGG + chr3_2:23867147-23867166 Msa0400010:intron 20.0%
!! AAATAAATCAAAAAGAGTGA+GGG - chr3_2:23867340-23867359 None:intergenic 20.0%
!! AAAATAAATCAAAAAGAGTG+AGG - chr3_2:23867341-23867360 None:intergenic 20.0%
!! TAAGGTTTATAAACATTTCT+AGG + chr3_2:23867463-23867482 Msa0400010:intron 20.0%
!!! GTCATATATTTTTTGTGATA+TGG + chr3_2:23867485-23867504 Msa0400010:intron 20.0%
!!! ATTGGTTCATTTGATTTTAT+TGG + chr3_2:23867657-23867676 Msa0400010:CDS 20.0%
! AATTGGAGTAATTAATTACC+TGG - chr3_2:23865526-23865545 None:intergenic 25.0%
!!! TGGAAATCTTTTCTGAAAAA+TGG - chr3_2:23866780-23866799 None:intergenic 25.0%
! TTACTCATCGATACTTTATA+TGG - chr3_2:23867098-23867117 None:intergenic 25.0%
! AGTAAATGATTTATCGACAA+CGG + chr3_2:23867113-23867132 Msa0400010:intron 25.0%
! AAATGTTTATTTACATGTGC+AGG + chr3_2:23867183-23867202 Msa0400010:intron 25.0%
! AATAAATCAAAAAGAGTGAG+GGG - chr3_2:23867339-23867358 None:intergenic 25.0%
!!! TTGTTATCATTGGTTTTCTA+AGG + chr3_2:23867445-23867464 Msa0400010:intron 25.0%
! GATATGGTTAAATGAATTTG+TGG + chr3_2:23867501-23867520 Msa0400010:intron 25.0%
!! ATCAAAAGTTGATTGATTAC+AGG + chr3_2:23867535-23867554 Msa0400010:intron 25.0%
!! TTGCATATCTTTTCTATTTG+TGG + chr3_2:23867848-23867867 Msa0400010:intron 25.0%
!! TTTTCAGTGATGTAAATCAA+CGG - chr3_2:23868082-23868101 None:intergenic 25.0%
! TTGATTTACATCACTGAAAA+TGG + chr3_2:23868082-23868101 Msa0400010:CDS 25.0%
! GATAATATAGATGACGATAA+TGG - chr3_2:23868301-23868320 None:intergenic 25.0%
! TAGAACATCGTTAAATTGAT+TGG - chr3_2:23868382-23868401 None:intergenic 25.0%
TTCCCCAAAGGATTTATATT+TGG + chr3_2:23865482-23865501 Msa0400010:CDS 30.0%
CTCCAAATATAAATCCTTTG+GGG - chr3_2:23865487-23865506 None:intergenic 30.0%
GCTCCAAATATAAATCCTTT+GGG - chr3_2:23865488-23865507 None:intergenic 30.0%
TGCTCCAAATATAAATCCTT+TGG - chr3_2:23865489-23865508 None:intergenic 30.0%
! AAAGGATTTATATTTGGAGC+AGG + chr3_2:23865488-23865507 Msa0400010:CDS 30.0%
GTAATTAATTACCTGGTATG+AGG - chr3_2:23865519-23865538 None:intergenic 30.0%
GTAGTTGTGATATGAATCAA+TGG - chr3_2:23865994-23866013 None:intergenic 30.0%
TGATTCATATCACAACTACA+AGG + chr3_2:23865995-23866014 Msa0400010:CDS 30.0%
TGCATTACACTTGTATCTAA+GGG + chr3_2:23866118-23866137 Msa0400010:intron 30.0%
AATCATCAAGGATATGAACT+TGG + chr3_2:23866275-23866294 Msa0400010:CDS 30.0%
CAATTTCATCAACGAGTTAT+TGG + chr3_2:23866489-23866508 Msa0400010:CDS 30.0%
!! ATTGGTGACTCTTTTTCATT+GGG + chr3_2:23866620-23866639 Msa0400010:CDS 30.0%
!! GAACTTTGCTTTAAGGAATT+TGG + chr3_2:23866810-23866829 Msa0400010:CDS 30.0%
! TTGGTGATAGAGTGAAATAT+TGG + chr3_2:23866829-23866848 Msa0400010:CDS 30.0%
TGGTGATAGAGTGAAATATT+GGG + chr3_2:23866830-23866849 Msa0400010:CDS 30.0%
ATATGGCAAAAGTCTAACAA+TGG - chr3_2:23867081-23867100 None:intergenic 30.0%
!!! CATTAGGGTTTTGTTATCAT+TGG + chr3_2:23867435-23867454 Msa0400010:intron 30.0%
GTTGATTGATTACAGGTTTA+TGG + chr3_2:23867542-23867561 Msa0400010:intron 30.0%
!!! GCTTGTTTTGCATTGAATTT+TGG - chr3_2:23867627-23867646 None:intergenic 30.0%
AATTCAATGCAAAACAAGCT+AGG + chr3_2:23867628-23867647 Msa0400010:CDS 30.0%
! GAAATTAGTTTCTTACATGC+AGG - chr3_2:23867771-23867790 None:intergenic 30.0%
TAGTAAGAGAACTCATAGAA+TGG - chr3_2:23867796-23867815 None:intergenic 30.0%
TTTCAGTGATGTAAATCAAC+GGG - chr3_2:23868081-23868100 None:intergenic 30.0%
TAGTCTCTTACATCTCTAAA+AGG + chr3_2:23868342-23868361 Msa0400010:intron 30.0%
CTGTCATACATAAAGGAAAA+TGG - chr3_2:23868407-23868426 None:intergenic 30.0%
! CATTTTCCTTTATGTATGAC+AGG + chr3_2:23868405-23868424 Msa0400010:intron 30.0%
AAATGTCATTCCAAATCTCA+CGG - chr3_2:23868501-23868520 None:intergenic 30.0%
! ACATTTGTGGATTACAAGAA+TGG + chr3_2:23868515-23868534 Msa0400010:CDS 30.0%
AATGAAGCAACATCAAGAAG+TGG - chr3_2:23865449-23865468 None:intergenic 35.0%
!! GTGAAAGTATCCCATATACT+CGG - chr3_2:23865804-23865823 None:intergenic 35.0%
ACTTTCACCCATAAATATCC+TGG + chr3_2:23865816-23865835 Msa0400010:CDS 35.0%
GTGCATTACACTTGTATCTA+AGG + chr3_2:23866117-23866136 Msa0400010:intron 35.0%
GGAAGATGTTAGAATCATCA+AGG + chr3_2:23866263-23866282 Msa0400010:intron 35.0%
CAATATTCTAGACCAGGATA+AGG - chr3_2:23866316-23866335 None:intergenic 35.0%
TCCATAATAGAAGGAAAGCT+TGG + chr3_2:23866430-23866449 Msa0400010:intron 35.0%
ACCAAGCTTTCCTTCTATTA+TGG - chr3_2:23866434-23866453 None:intergenic 35.0%
ATAATAGAAGGAAAGCTTGG+TGG + chr3_2:23866433-23866452 Msa0400010:intron 35.0%
! ATCAACGAGTTATTGGCTAA+TGG + chr3_2:23866496-23866515 Msa0400010:CDS 35.0%
CAATGAAAAAGAGTCACCAA+TGG - chr3_2:23866621-23866640 None:intergenic 35.0%
!! CATTGGTGACTCTTTTTCAT+TGG + chr3_2:23866619-23866638 Msa0400010:CDS 35.0%
!! ACTCATCTTCTAAAGCTTGT+GGG - chr3_2:23866650-23866669 None:intergenic 35.0%
!! TACTCATCTTCTAAAGCTTG+TGG - chr3_2:23866651-23866670 None:intergenic 35.0%
!! CAAGCTTTAGAAGATGAGTA+TGG + chr3_2:23866651-23866670 Msa0400010:CDS 35.0%
CTATGCAGAACTTTGCTTTA+AGG + chr3_2:23866803-23866822 Msa0400010:CDS 35.0%
AGTCAAAATGGCTATGCAAA+TGG + chr3_2:23866879-23866898 Msa0400010:CDS 35.0%
TGGTTGAATCCAAATTGTAC+CGG + chr3_2:23866930-23866949 Msa0400010:CDS 35.0%
CTTTGTCTTGTACACATTGA+CGG - chr3_2:23867018-23867037 None:intergenic 35.0%
! TGTGTACAAGACAAAGTATC+AGG + chr3_2:23867022-23867041 Msa0400010:CDS 35.0%
! GAAACTCAAAAGGGTGTAAT+AGG + chr3_2:23867205-23867224 Msa0400010:CDS 35.0%
TTTATGGATCCACTTACAAC+AGG + chr3_2:23867558-23867577 Msa0400010:CDS 35.0%
AAAGAATCTGTCAAGTAGCT+AGG - chr3_2:23867741-23867760 None:intergenic 35.0%
TAGCTACTTGACAGATTCTT+TGG + chr3_2:23867740-23867759 Msa0400010:CDS 35.0%
TTAATTGCAGTTGAGCGAAA+TGG + chr3_2:23867871-23867890 Msa0400010:intron 35.0%
TAATTGCAGTTGAGCGAAAT+GGG + chr3_2:23867872-23867891 Msa0400010:intron 35.0%
TGGGAAACCTATTGGTATTA+AGG + chr3_2:23867891-23867910 Msa0400010:CDS 35.0%
TGACGTACCTTAATACCAAT+AGG - chr3_2:23867901-23867920 None:intergenic 35.0%
CAGCAAAATCGTTAGAAGAA+AGG - chr3_2:23867930-23867949 None:intergenic 35.0%
! CTTTCTTCTAACGATTTTGC+TGG + chr3_2:23867928-23867947 Msa0400010:intron 35.0%
TTATGCAGATTGCTTCTGAT+TGG + chr3_2:23867993-23868012 Msa0400010:intron 35.0%
!! AATCAATTCGAAAAGTGTCC+AGG - chr3_2:23868277-23868296 None:intergenic 35.0%
ACGTCCAAGGATATTACATA+TGG + chr3_2:23868438-23868457 Msa0400010:CDS 35.0%
AGGACCATATGTAATATCCT+TGG - chr3_2:23868445-23868464 None:intergenic 35.0%
CCATTCAAAATTGTCGAACA+AGG - chr3_2:23868465-23868484 None:intergenic 35.0%
! CCTTGTTCGACAATTTTGAA+TGG + chr3_2:23868462-23868481 Msa0400010:CDS 35.0%
! GAGATTTGGAATGACATTTG+TGG + chr3_2:23868502-23868521 Msa0400010:CDS 35.0%
CAAAAGCAATTAGGCAGAGA+AGG - chr3_2:23865373-23865392 None:intergenic 40.0%
GCACAAGTGCAAAAGCAATT+AGG - chr3_2:23865382-23865401 None:intergenic 40.0%
AGTAGAAACAGTTTCCCCAA+AGG + chr3_2:23865470-23865489 Msa0400010:CDS 40.0%
ATGGTAGAACACCGAGTATA+TGG + chr3_2:23865790-23865809 Msa0400010:CDS 40.0%
TGGTAGAACACCGAGTATAT+GGG + chr3_2:23865791-23865810 Msa0400010:CDS 40.0%
AGATAGAAGCAATGCAGATG+TGG + chr3_2:23865968-23865987 Msa0400010:CDS 40.0%
CATACAGATTCTCCTTATCC+TGG + chr3_2:23866301-23866320 Msa0400010:CDS 40.0%
ACTTGGCAATATTCTAGACC+AGG - chr3_2:23866322-23866341 None:intergenic 40.0%
! GGTGGTGGTATAAATCAAGA+AGG + chr3_2:23866451-23866470 Msa0400010:CDS 40.0%
!! GCTTTAGAAGATGAGTATGG+TGG + chr3_2:23866654-23866673 Msa0400010:CDS 40.0%
TTGGAAACTCACACTATGAG+AGG - chr3_2:23866690-23866709 None:intergenic 40.0%
AGCAAAGTTCTGCATAGTCT+TGG - chr3_2:23866800-23866819 None:intergenic 40.0%
! GGGTTACTTTGAATGAACCA+TGG + chr3_2:23866850-23866869 Msa0400010:CDS 40.0%
!!! CCATTTTGACTGTAACTCCA+TGG - chr3_2:23866870-23866889 None:intergenic 40.0%
CCATGGAGTTACAGTCAAAA+TGG + chr3_2:23866867-23866886 Msa0400010:CDS 40.0%
TTGAATCCAAATTGTACCGG+TGG + chr3_2:23866933-23866952 Msa0400010:CDS 40.0%
! TGGTAGTGCGTGACAATATA+GGG - chr3_2:23866975-23866994 None:intergenic 40.0%
!! TTGGTAGTGCGTGACAATAT+AGG - chr3_2:23866976-23866995 None:intergenic 40.0%
ACATGTGCAGGAAACTCAAA+AGG + chr3_2:23867195-23867214 Msa0400010:intron 40.0%
CATGTGCAGGAAACTCAAAA+GGG + chr3_2:23867196-23867215 Msa0400010:intron 40.0%
GGGTGTAATAGGAATAACCT+TGG + chr3_2:23867216-23867235 Msa0400010:CDS 40.0%
! GAATAACCTTGGTAGCTAAC+TGG + chr3_2:23867227-23867246 Msa0400010:CDS 40.0%
GGATAATCTCCTGTTGTAAG+TGG - chr3_2:23867570-23867589 None:intergenic 40.0%
! ACAAGGGATCTCATGCTTTT+TGG - chr3_2:23867591-23867610 None:intergenic 40.0%
! AAAAGCATGAGATCCCTTGT+TGG + chr3_2:23867591-23867610 Msa0400010:CDS 40.0%
TGGTAATCTTGCTCCAACAA+GGG - chr3_2:23867607-23867626 None:intergenic 40.0%
! TTGGTAATCTTGCTCCAACA+AGG - chr3_2:23867608-23867627 None:intergenic 40.0%
AAACAAGCTAGGCTACTCAT+TGG + chr3_2:23867639-23867658 Msa0400010:CDS 40.0%
GGTCTAGCATTGCTTAGAAA+TGG - chr3_2:23867720-23867739 None:intergenic 40.0%
TGGTTGTATGTTTATCCGAG+AGG + chr3_2:23868013-23868032 Msa0400010:CDS 40.0%
AGAAGATCACGAATTCCTCT+CGG - chr3_2:23868031-23868050 None:intergenic 40.0%
TGATCTTCTGTTGTACACCA+AGG + chr3_2:23868042-23868061 Msa0400010:CDS 40.0%
! CGGGTTATTGTACTTTTCCT+TGG - chr3_2:23868062-23868081 None:intergenic 40.0%
GACGTGCATACTTCACTTAT+AGG + chr3_2:23868206-23868225 Msa0400010:intron 40.0%
GTACAGTGATCCTACACTAT+CGG + chr3_2:23868238-23868257 Msa0400010:CDS 40.0%
TCCTTTATGTATGACAGGCA+AGG + chr3_2:23868410-23868429 Msa0400010:intron 40.0%
ACCTTGCCTGTCATACATAA+AGG - chr3_2:23868414-23868433 None:intergenic 40.0%
! CGACAATTTTGAATGGTGCT+CGG + chr3_2:23868469-23868488 Msa0400010:CDS 40.0%
! GACAATTTTGAATGGTGCTC+GGG + chr3_2:23868470-23868489 Msa0400010:CDS 40.0%
! GAAGGTGCAGCAAATGAAGA+TGG + chr3_2:23865771-23865790 Msa0400010:CDS 45.0%
! ATAGAAGGAAAGCTTGGTGG+TGG + chr3_2:23866436-23866455 Msa0400010:intron 45.0%
TGGCTATGCAAATGGACGAA+TGG + chr3_2:23866887-23866906 Msa0400010:CDS 45.0%
AACCAACTAGAACAACGACC+TGG - chr3_2:23866915-23866934 None:intergenic 45.0%
GAATCACCACCGGTACAATT+TGG - chr3_2:23866942-23866961 None:intergenic 45.0%
CTTGTACACATTGACGGCTT+CGG - chr3_2:23867012-23867031 None:intergenic 45.0%
! ATTTGGAATCTGAGAGTGGC+AGG - chr3_2:23867255-23867274 None:intergenic 45.0%
! TCGGATTTGGAATCTGAGAG+TGG - chr3_2:23867259-23867278 None:intergenic 45.0%
TCTTTCAGCGGCTTTCTGAT+CGG - chr3_2:23867278-23867297 None:intergenic 45.0%
!! AGAGCTGTCGACTTCATGTA+TGG + chr3_2:23867295-23867314 Msa0400010:CDS 45.0%
!! CTGTCGACTTCATGTATGGA+TGG + chr3_2:23867299-23867318 Msa0400010:CDS 45.0%
TCAAAAAGAGTGAGGGGAAG+AGG - chr3_2:23867333-23867352 None:intergenic 45.0%
GCTTAGAAATGGTGCATCTG+AGG - chr3_2:23867709-23867728 None:intergenic 45.0%
GAGCGAAATGGGAAACCTAT+TGG + chr3_2:23867883-23867902 Msa0400010:CDS 45.0%
GATTCTTGGACCGATAGTGT+AGG - chr3_2:23868251-23868270 None:intergenic 45.0%
TCGGGTTATTCCGTGAGATT+TGG + chr3_2:23868488-23868507 Msa0400010:CDS 45.0%
AGCAGGATCTTCCTCATACC+AGG + chr3_2:23865505-23865524 Msa0400010:CDS 50.0%
CACCAGGTCGTTGTTCTAGT+TGG + chr3_2:23866910-23866929 Msa0400010:CDS 50.0%
CTCAATCGCAGAATCACCAC+CGG - chr3_2:23866952-23866971 None:intergenic 50.0%
CTTCGGCATGAGCTAGAAGT+TGG - chr3_2:23866995-23867014 None:intergenic 50.0%
CAGGTACCAGTTAGCTACCA+AGG - chr3_2:23867236-23867255 None:intergenic 50.0%
AGCGGCTTTCTGATCGGATT+TGG - chr3_2:23867272-23867291 None:intergenic 50.0%
GAAGTCGACAGCTCTTTCAG+CGG - chr3_2:23867290-23867309 None:intergenic 50.0%
AAGTGTCCAGGAGCGATTCT+TGG - chr3_2:23868265-23868284 None:intergenic 50.0%
ACGAGAAACTTTCTGCGCTG+TGG + chr3_2:23868549-23868568 Msa0400010:CDS 50.0%
GCAAATGGACGAATGGCACC+AGG + chr3_2:23866894-23866913 Msa0400010:CDS 55.0%
ATCGGTCCAAGAATCGCTCC+TGG + chr3_2:23868256-23868275 Msa0400010:CDS 55.0%
AGGCAAGGTGCAAACGTCCA+AGG + chr3_2:23868425-23868444 Msa0400010:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 23865356 23868643 23865356 ID=Msa0400010;Name=Msa0400010
chr3_2 mRNA 23865356 23868643 23865356 ID=Msa0400010-mRNA-1;Parent=Msa0400010;Name=Msa0400010-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|13|0|530
chr3_2 exon 23865356 23865526 23865356 ID=Msa0400010-mRNA-1:exon:5045;Parent=Msa0400010-mRNA-1
chr3_2 exon 23865768 23865837 23865768 ID=Msa0400010-mRNA-1:exon:5046;Parent=Msa0400010-mRNA-1
chr3_2 exon 23865958 23866016 23865958 ID=Msa0400010-mRNA-1:exon:5047;Parent=Msa0400010-mRNA-1
chr3_2 exon 23866264 23866339 23866264 ID=Msa0400010-mRNA-1:exon:5048;Parent=Msa0400010-mRNA-1
chr3_2 exon 23866440 23866517 23866440 ID=Msa0400010-mRNA-1:exon:5049;Parent=Msa0400010-mRNA-1
chr3_2 exon 23866610 23866697 23866610 ID=Msa0400010-mRNA-1:exon:5050;Parent=Msa0400010-mRNA-1
chr3_2 exon 23866788 23867043 23866788 ID=Msa0400010-mRNA-1:exon:5051;Parent=Msa0400010-mRNA-1
chr3_2 exon 23867205 23867320 23867205 ID=Msa0400010-mRNA-1:exon:5052;Parent=Msa0400010-mRNA-1
chr3_2 exon 23867557 23867774 23867557 ID=Msa0400010-mRNA-1:exon:5053;Parent=Msa0400010-mRNA-1
chr3_2 exon 23867881 23867912 23867881 ID=Msa0400010-mRNA-1:exon:5054;Parent=Msa0400010-mRNA-1
chr3_2 exon 23868001 23868103 23868001 ID=Msa0400010-mRNA-1:exon:5055;Parent=Msa0400010-mRNA-1
chr3_2 exon 23868228 23868336 23868228 ID=Msa0400010-mRNA-1:exon:5056;Parent=Msa0400010-mRNA-1
chr3_2 exon 23868427 23868643 23868427 ID=Msa0400010-mRNA-1:exon:5057;Parent=Msa0400010-mRNA-1
chr3_2 CDS 23865356 23865526 23865356 ID=Msa0400010-mRNA-1:cds;Parent=Msa0400010-mRNA-1
chr3_2 CDS 23865768 23865837 23865768 ID=Msa0400010-mRNA-1:cds;Parent=Msa0400010-mRNA-1
chr3_2 CDS 23865958 23866016 23865958 ID=Msa0400010-mRNA-1:cds;Parent=Msa0400010-mRNA-1
chr3_2 CDS 23866264 23866339 23866264 ID=Msa0400010-mRNA-1:cds;Parent=Msa0400010-mRNA-1
chr3_2 CDS 23866440 23866517 23866440 ID=Msa0400010-mRNA-1:cds;Parent=Msa0400010-mRNA-1
chr3_2 CDS 23866610 23866697 23866610 ID=Msa0400010-mRNA-1:cds;Parent=Msa0400010-mRNA-1
chr3_2 CDS 23866788 23867043 23866788 ID=Msa0400010-mRNA-1:cds;Parent=Msa0400010-mRNA-1
chr3_2 CDS 23867205 23867320 23867205 ID=Msa0400010-mRNA-1:cds;Parent=Msa0400010-mRNA-1
chr3_2 CDS 23867557 23867774 23867557 ID=Msa0400010-mRNA-1:cds;Parent=Msa0400010-mRNA-1
chr3_2 CDS 23867881 23867912 23867881 ID=Msa0400010-mRNA-1:cds;Parent=Msa0400010-mRNA-1
chr3_2 CDS 23868001 23868103 23868001 ID=Msa0400010-mRNA-1:cds;Parent=Msa0400010-mRNA-1
chr3_2 CDS 23868228 23868336 23868228 ID=Msa0400010-mRNA-1:cds;Parent=Msa0400010-mRNA-1
chr3_2 CDS 23868427 23868643 23868427 ID=Msa0400010-mRNA-1:cds;Parent=Msa0400010-mRNA-1
Gene Sequence

>Msa0400010

ATGACATTCAATTACCTTCTCTGCCTAATTGCTTTTGCACTTGTGCTTAGCAAAACAAATGTCAATTGCATTGAAACTATTGAAGTTGATCCACTTCTTGATGTTGCTTCATTGAGTAGAAACAGTTTCCCCAAAGGATTTATATTTGGAGCAGGATCTTCCTCATACCAGTTTGAAGGTGCAGCAAATGAAGATGGTAGAACACCGAGTATATGGGATACTTTCACCCATAAATATCCTGAAAAGATCAAAGATAGAAGCAATGCAGATGTGGCCATTGATTCATATCACAACTACAAGGAAGATGTTAGAATCATCAAGGATATGAACTTGGATTCATACAGATTCTCCTTATCCTGGTCTAGAATATTGCCAAAAGGAAAGCTTGGTGGTGGTATAAATCAAGAAGGAATCAACTATTACAACAATTTCATCAACGAGTTATTGGCTAATGGTATAAAACCATTGGTGACTCTTTTTCATTGGGATCTCCCACAAGCTTTAGAAGATGAGTATGGTGGTTTCTTAAGTCCTCTCATAGTAAAAGATTTCCAAGACTATGCAGAACTTTGCTTTAAGGAATTTGGTGATAGAGTGAAATATTGGGTTACTTTGAATGAACCATGGAGTTACAGTCAAAATGGCTATGCAAATGGACGAATGGCACCAGGTCGTTGTTCTAGTTGGTTGAATCCAAATTGTACCGGTGGTGATTCTGCGATTGAGCCCTATATTGTCACGCACTACCAACTTCTAGCTCATGCCGAAGCCGTCAATGTGTACAAGACAAAGTATCAGGAAACTCAAAAGGGTGTAATAGGAATAACCTTGGTAGCTAACTGGTACCTGCCACTCTCAGATTCCAAATCCGATCAGAAAGCCGCTGAAAGAGCTGTCGACTTCATGTATGGATGGTTTATGGATCCACTTACAACAGGAGATTATCCAAAAAGCATGAGATCCCTTGTTGGAGCAAGATTACCAAAATTCAATGCAAAACAAGCTAGGCTACTCATTGGTTCATTTGATTTTATTGGTTTGAACTATTATTCTTCAACATATGCCTCAGATGCACCATTTCTAAGCAATGCTAGACCTAGCTACTTGACAGATTCTTTGGTTAATCCTGCATTTGAGCGAAATGGGAAACCTATTGGTATTAAGATTGCTTCTGATTGGTTGTATGTTTATCCGAGAGGAATTCGTGATCTTCTGTTGTACACCAAGGAAAAGTACAATAACCCGTTGATTTACATCACTGAAAATGGTATTAACGAGTACAGTGATCCTACACTATCGGTCCAAGAATCGCTCCTGGACACTTTTCGAATTGATTACCATTATCGTCATCTATATTATCTTCGATCTGCAATTGAGCAAGGTGCAAACGTCCAAGGATATTACATATGGTCCTTGTTCGACAATTTTGAATGGTGCTCGGGTTATTCCGTGAGATTTGGAATGACATTTGTGGATTACAAGAATGGTTTGAAAAGATACGAGAAACTTTCTGCGCTGTGGTTCAAGAATTTTCTCAGAAAAGAAACTAAACTTATGTTTCTTGTGAGAAAAGTTATTAGTTTTATTCATTAA

Protein sequence

>Msa0400010

MTFNYLLCLIAFALVLSKTNVNCIETIEVDPLLDVASLSRNSFPKGFIFGAGSSSYQFEGAANEDGRTPSIWDTFTHKYPEKIKDRSNADVAIDSYHNYKEDVRIIKDMNLDSYRFSLSWSRILPKGKLGGGINQEGINYYNNFINELLANGIKPLVTLFHWDLPQALEDEYGGFLSPLIVKDFQDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGRMAPGRCSSWLNPNCTGGDSAIEPYIVTHYQLLAHAEAVNVYKTKYQETQKGVIGITLVANWYLPLSDSKSDQKAAERAVDFMYGWFMDPLTTGDYPKSMRSLVGARLPKFNAKQARLLIGSFDFIGLNYYSSTYASDAPFLSNARPSYLTDSLVNPAFERNGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGINEYSDPTLSVQESLLDTFRIDYHYRHLYYLRSAIEQGANVQGYYIWSLFDNFEWCSGYSVRFGMTFVDYKNGLKRYEKLSALWFKNFLRKETKLMFLVRKVISFIH*