Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286680 | XP_013445572.1 | 99.083 | 109 | 1 | 0 | 1 | 109 | 1 | 109 | 2.61e-73 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286680 | sp|O96860|DYL2_DROME | 55.556 | 90 | 38 | 1 | 1 | 90 | 1 | 88 | 2.05e-29 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286680 | A0A072TRW8 | 99.083 | 109 | 1 | 0 | 1 | 109 | 1 | 109 | 1.25e-73 | 223 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa1286680 | 0.832129 | 1.127354e-55 | -8.615850e-47 |
| Msa0017120 | Msa1286680 | 0.816904 | 4.348252e-52 | -8.615850e-47 |
| Msa0020630 | Msa1286680 | 0.818225 | 2.190421e-52 | -8.615850e-47 |
| Msa0038310 | Msa1286680 | 0.822073 | 2.879000e-53 | -8.615850e-47 |
| Msa0047470 | Msa1286680 | 0.835993 | 1.214235e-56 | -8.615850e-47 |
| Msa0079250 | Msa1286680 | 0.814329 | 1.628190e-51 | -8.615850e-47 |
| Msa0086090 | Msa1286680 | 0.811428 | 7.035473e-51 | -8.615850e-47 |
| Msa0087110 | Msa1286680 | 0.820816 | 5.617048e-53 | -8.615850e-47 |
| Msa0100250 | Msa1286680 | 0.834395 | 3.073099e-56 | -8.615850e-47 |
| Msa0114250 | Msa1286680 | 0.811765 | 5.944734e-51 | -8.615850e-47 |
| Msa0618520 | Msa1286680 | 0.804463 | 2.134268e-49 | -8.615850e-47 |
| Msa0650650 | Msa1286680 | 0.839754 | 1.311362e-57 | -8.615850e-47 |
| Msa0650740 | Msa1286680 | 0.838676 | 2.495727e-57 | -8.615850e-47 |
| Msa0655660 | Msa1286680 | -0.808706 | 2.715364e-50 | -8.615850e-47 |
| Msa0667970 | Msa1286680 | 0.805564 | 1.255928e-49 | -8.615850e-47 |
| Msa0738870 | Msa1286680 | 0.808223 | 3.441883e-50 | -8.615850e-47 |
| Msa0743640 | Msa1286680 | 0.819117 | 1.374134e-52 | -8.615850e-47 |
| Msa0783270 | Msa1286680 | 0.811324 | 7.412434e-51 | -8.615850e-47 |
| Msa0787720 | Msa1286680 | 0.823801 | 1.139144e-53 | -8.615850e-47 |
| Msa0828570 | Msa1286680 | 0.801959 | 7.040685e-49 | -8.615850e-47 |
| Msa0159750 | Msa1286680 | 0.814253 | 1.693083e-51 | -8.615850e-47 |
| Msa0178940 | Msa1286680 | 0.839943 | 1.171054e-57 | -8.615850e-47 |
| Msa0185390 | Msa1286680 | 0.829354 | 5.396396e-55 | -8.615850e-47 |
| Msa0222070 | Msa1286680 | 0.806635 | 7.474654e-50 | -8.615850e-47 |
| Msa0222120 | Msa1286680 | 0.808688 | 2.739378e-50 | -8.615850e-47 |
| Msa0223100 | Msa1286680 | 0.852578 | 4.211399e-61 | -8.615850e-47 |
| Msa0223290 | Msa1286680 | 0.837172 | 6.080018e-57 | -8.615850e-47 |
| Msa0223380 | Msa1286680 | 0.822684 | 2.076225e-53 | -8.615850e-47 |
| Msa0231590 | Msa1286680 | 0.800813 | 1.208326e-48 | -8.615850e-47 |
| Msa1246370 | Msa1286680 | 0.835732 | 1.414072e-56 | -8.615850e-47 |
| Msa1286680 | Msa1287360 | 0.916260 | 2.205612e-85 | -8.615850e-47 |
| Msa1286680 | Msa1306200 | 0.829834 | 4.124587e-55 | -8.615850e-47 |
| Msa1286680 | Msa1326400 | 0.825114 | 5.592252e-54 | -8.615850e-47 |
| Msa1286680 | Msa1334650 | 0.820949 | 5.233859e-53 | -8.615850e-47 |
| Msa1286680 | Msa1335720 | 0.800615 | 1.326345e-48 | -8.615850e-47 |
| Msa1286680 | Msa1361190 | 0.800994 | 1.109760e-48 | -8.615850e-47 |
| Msa1286680 | Msa1381130 | 0.827934 | 1.188948e-54 | -8.615850e-47 |
| Msa1286680 | Msa1381210 | -0.804487 | 2.109675e-49 | -8.615850e-47 |
| Msa1286680 | Msa1405770 | 0.808076 | 3.699868e-50 | -8.615850e-47 |
| Msa1286680 | Msa1412080 | 0.811770 | 5.928197e-51 | -8.615850e-47 |
| Msa1286680 | Msa1432640 | 0.804203 | 2.418324e-49 | -8.615850e-47 |
| Msa1286680 | Msa1440180 | 0.824280 | 8.792891e-54 | -8.615850e-47 |
| Msa1286680 | Msa1449740 | 0.823329 | 1.468676e-53 | -8.615850e-47 |
| Msa1286680 | Msa1450980 | 0.824558 | 7.563713e-54 | -8.615850e-47 |
| Msa0369090 | Msa1286680 | 0.805107 | 1.566293e-49 | -8.615850e-47 |
| Msa0369780 | Msa1286680 | 0.805261 | 1.454175e-49 | -8.615850e-47 |
| Msa0371070 | Msa1286680 | 0.803896 | 2.801256e-49 | -8.615850e-47 |
| Msa0380430 | Msa1286680 | 0.811604 | 6.443089e-51 | -8.615850e-47 |
| Msa0382590 | Msa1286680 | 0.803126 | 4.045617e-49 | -8.615850e-47 |
| Msa0387790 | Msa1286680 | 0.813671 | 2.274087e-51 | -8.615850e-47 |
| Msa0401340 | Msa1286680 | 0.816570 | 5.165670e-52 | -8.615850e-47 |
| Msa0411560 | Msa1286680 | 0.801475 | 8.846128e-49 | -8.615850e-47 |
| Msa0421800 | Msa1286680 | 0.853889 | 1.772891e-61 | -8.615850e-47 |
| Msa0431520 | Msa1286680 | 0.814725 | 1.330698e-51 | -8.615850e-47 |
| Msa0431830 | Msa1286680 | 0.817297 | 3.547792e-52 | -8.615850e-47 |
| Msa0432720 | Msa1286680 | 0.812114 | 4.989247e-51 | -8.615850e-47 |
| Msa0448080 | Msa1286680 | 0.813535 | 2.436585e-51 | -8.615850e-47 |
| Msa0448120 | Msa1286680 | 0.817070 | 3.989975e-52 | -8.615850e-47 |
| Msa0467800 | Msa1286680 | 0.834536 | 2.832510e-56 | -8.615850e-47 |
| Msa0467880 | Msa1286680 | 0.828312 | 9.642914e-55 | -8.615850e-47 |
| Msa0482680 | Msa1286680 | 0.841556 | 4.424325e-58 | -8.615850e-47 |
| Msa1015060 | Msa1286680 | 0.813729 | 2.209231e-51 | -8.615850e-47 |
| Msa1016110 | Msa1286680 | 0.802367 | 5.801279e-49 | -8.615850e-47 |
| Msa1033160 | Msa1286680 | 0.807666 | 4.522240e-50 | -8.615850e-47 |
| Msa1038320 | Msa1286680 | 0.840532 | 8.215197e-58 | -8.615850e-47 |
| Msa1043870 | Msa1286680 | 0.822661 | 2.102542e-53 | -8.615850e-47 |
| Msa1063920 | Msa1286680 | 0.801365 | 9.321134e-49 | -8.615850e-47 |
| Msa1102180 | Msa1286680 | 0.805321 | 1.412492e-49 | -8.615850e-47 |
| Msa0260180 | Msa1286680 | 0.805431 | 1.339420e-49 | -8.615850e-47 |
| Msa0263620 | Msa1286680 | 0.808199 | 3.482413e-50 | -8.615850e-47 |
| Msa0275030 | Msa1286680 | 0.801658 | 8.115794e-49 | -8.615850e-47 |
| Msa0282860 | Msa1286680 | 0.805074 | 1.590833e-49 | -8.615850e-47 |
| Msa0288240 | Msa1286680 | 0.821655 | 3.597820e-53 | -8.615850e-47 |
| Msa0288330 | Msa1286680 | 0.814047 | 1.879384e-51 | -8.615850e-47 |
| Msa0323630 | Msa1286680 | 0.806998 | 6.264571e-50 | -8.615850e-47 |
| Msa0326670 | Msa1286680 | 0.818396 | 2.003360e-52 | -8.615850e-47 |
| Msa0333900 | Msa1286680 | 0.814112 | 1.818208e-51 | -8.615850e-47 |
| Msa0334020 | Msa1286680 | 0.812358 | 4.413748e-51 | -8.615850e-47 |
| Msa0336270 | Msa1286680 | 0.824288 | 8.756721e-54 | -8.615850e-47 |
| Msa1115580 | Msa1286680 | 0.816264 | 6.049503e-52 | -8.615850e-47 |
| Msa1119720 | Msa1286680 | 0.808054 | 3.739422e-50 | -8.615850e-47 |
| Msa1134560 | Msa1286680 | 0.814866 | 1.238444e-51 | -8.615850e-47 |
| Msa1157920 | Msa1286680 | 0.803842 | 2.873544e-49 | -8.615850e-47 |
| Msa1184580 | Msa1286680 | 0.811467 | 6.900964e-51 | -8.615850e-47 |
| Msa1218650 | Msa1286680 | 0.802695 | 4.965969e-49 | -8.615850e-47 |
| Msa1220740 | Msa1286680 | 0.825355 | 4.903822e-54 | -8.615850e-47 |
| Msa1222030 | Msa1286680 | -0.801530 | 8.623293e-49 | -8.615850e-47 |
| Msa0509540 | Msa1286680 | 0.806131 | 9.546148e-50 | -8.615850e-47 |
| Msa0512310 | Msa1286680 | 0.806492 | 8.011744e-50 | -8.615850e-47 |
| Msa0514260 | Msa1286680 | 0.851615 | 7.906097e-61 | -8.615850e-47 |
| Msa0525270 | Msa1286680 | 0.803825 | 2.897187e-49 | -8.615850e-47 |
| Msa0525280 | Msa1286680 | 0.807385 | 5.188042e-50 | -8.615850e-47 |
| Msa0530930 | Msa1286680 | 0.802218 | 6.225873e-49 | -8.615850e-47 |
| Msa0579340 | Msa1286680 | 0.857147 | 1.989413e-62 | -8.615850e-47 |
| Msa0583790 | Msa1286680 | 0.804536 | 2.061143e-49 | -8.615850e-47 |
| Msa0598250 | Msa1286680 | 0.800222 | 1.594938e-48 | -8.615850e-47 |
| Msa0600820 | Msa1286680 | 0.809899 | 1.506347e-50 | -8.615850e-47 |
| Msa0863760 | Msa1286680 | 0.821242 | 4.481633e-53 | -8.615850e-47 |
| Msa0899700 | Msa1286680 | 0.807014 | 6.217029e-50 | -8.615850e-47 |
| Msa0934830 | Msa1286680 | 0.826751 | 2.283745e-54 | -8.615850e-47 |
| Msa0950620 | Msa1286680 | 0.813332 | 2.701017e-51 | -8.615850e-47 |
| Msa0955260 | Msa1286680 | 0.805438 | 1.334882e-49 | -8.615850e-47 |
| Msa0958020 | Msa1286680 | 0.800888 | 1.166396e-48 | -8.615850e-47 |
| Msa0964680 | Msa1286680 | 0.804386 | 2.215124e-49 | -8.615850e-47 |
| Msa0971860 | Msa1286680 | 0.842628 | 2.302473e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286680 | MtrunA17_Chr8g0360861 | 99.083 | 109 | 1 | 0 | 1 | 109 | 1 | 109 | 2.40e-77 | 223 |
| Msa1286680 | MtrunA17_Chr6g0485891 | 50.538 | 93 | 46 | 0 | 1 | 93 | 35 | 127 | 5.62e-30 | 103 |
| Msa1286680 | MtrunA17_Chr2g0331651 | 55.556 | 90 | 40 | 0 | 1 | 90 | 1 | 90 | 9.84e-30 | 102 |
| Msa1286680 | MtrunA17_Chr4g0067531 | 48.837 | 86 | 42 | 1 | 5 | 90 | 46 | 129 | 2.39e-26 | 94.7 |
| Msa1286680 | MtrunA17_Chr4g0063491 | 49.367 | 79 | 40 | 0 | 11 | 89 | 159 | 237 | 4.00e-22 | 87.0 |
| Msa1286680 | MtrunA17_Chr8g0391451 | 45.882 | 85 | 44 | 1 | 12 | 94 | 60 | 144 | 1.16e-19 | 78.2 |
| Msa1286680 | MtrunA17_Chr4g0059791 | 50.633 | 79 | 38 | 1 | 12 | 89 | 222 | 300 | 1.37e-18 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286680 | AT4G27360.1 | 71.845 | 103 | 29 | 0 | 1 | 103 | 1 | 103 | 1.71e-50 | 155 |
| Msa1286680 | AT3G16120.2 | 55.435 | 92 | 41 | 0 | 1 | 92 | 1 | 92 | 4.93e-33 | 110 |
| Msa1286680 | AT3G16120.1 | 55.435 | 92 | 41 | 0 | 1 | 92 | 1 | 92 | 4.93e-33 | 110 |
| Msa1286680 | AT1G52245.1 | 51.064 | 94 | 46 | 0 | 1 | 94 | 1 | 94 | 3.30e-30 | 103 |
| Msa1286680 | AT4G15930.1 | 49.412 | 85 | 41 | 1 | 5 | 89 | 39 | 121 | 3.59e-24 | 89.4 |
| Msa1286680 | AT5G20110.1 | 46.988 | 83 | 44 | 0 | 12 | 94 | 123 | 205 | 2.79e-21 | 84.3 |
| Msa1286680 | AT1G23220.1 | 39.773 | 88 | 52 | 1 | 8 | 94 | 38 | 125 | 4.12e-18 | 74.3 |
| Msa1286680 | AT4G15930.2 | 49.180 | 61 | 29 | 1 | 5 | 65 | 39 | 97 | 1.34e-13 | 61.6 |
Find 28 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTGTAGGCACTGATTT+TGG | 0.221609 | 8_3:-35340822 | Msa1286680:CDS |
| GCACAAGAGTAGAACAAAAT+AGG | 0.295751 | 8_3:+35341165 | None:intergenic |
| CAGGAATTTGATAGGGTTCA+TGG | 0.298316 | 8_3:-35340858 | Msa1286680:CDS |
| CAGTTACATCATAGAAATCT+AGG | 0.300776 | 8_3:+35341002 | None:intergenic |
| AATTATTGCAGGAATTTGAT+AGG | 0.302502 | 8_3:-35340866 | Msa1286680:intron |
| TTAGCCCTCACAAAAGAAAA+AGG | 0.351072 | 8_3:+35340541 | None:intergenic |
| ATCATAGAAATCTAGGGCTT+TGG | 0.353606 | 8_3:+35341009 | None:intergenic |
| CTTCAATTCATCATGCTAGA+AGG | 0.354098 | 8_3:-35341097 | Msa1286680:exon |
| AATAGTAATGTAGAAAGAAA+TGG | 0.408786 | 8_3:-35340614 | Msa1286680:three_prime_UTR |
| TTGCTCTTTAAGGGATCTGC+TGG | 0.420352 | 8_3:-35340738 | Msa1286680:CDS |
| CCTGGTTGGCAATGCATTGT+AGG | 0.440795 | 8_3:-35340834 | Msa1286680:CDS |
| TTGCATAGTTTGAAGCATAT+CGG | 0.449905 | 8_3:+35341054 | None:intergenic |
| CTAGAAGGCAAGGCAGTGAT+TGG | 0.481296 | 8_3:-35341082 | Msa1286680:CDS |
| CCTACAATGCATTGCCAACC+AGG | 0.504627 | 8_3:+35340834 | None:intergenic |
| AAATCAGTTCTCAGCAATAG+AGG | 0.512873 | 8_3:-35340700 | Msa1286680:CDS |
| TATAGCTCGATTTATAAAGA+AGG | 0.514762 | 8_3:-35340969 | Msa1286680:intron |
| TTTGATAGGGTTCATGGACC+TGG | 0.522418 | 8_3:-35340852 | Msa1286680:CDS |
| ATTATTGCAGGAATTTGATA+GGG | 0.524356 | 8_3:-35340865 | Msa1286680:intron |
| TGTGTACAGTCGAAGCTACA+TGG | 0.533055 | 8_3:-35340510 | Msa1286680:three_prime_UTR |
| TATAAATCGAGCTATATCAA+TGG | 0.561045 | 8_3:+35340976 | None:intergenic |
| ATCTGCTGGTCCACAAGCAG+AGG | 0.571115 | 8_3:-35340724 | Msa1286680:CDS |
| ATTCATCATGCTAGAAGGCA+AGG | 0.581622 | 8_3:-35341092 | Msa1286680:exon |
| TCCTTTGTGACACATTGTAG+TGG | 0.583602 | 8_3:-35340798 | Msa1286680:CDS |
| AGTTACATCATAGAAATCTA+GGG | 0.585718 | 8_3:+35341003 | None:intergenic |
| ATAGGGTTCATGGACCTGGT+TGG | 0.594187 | 8_3:-35340848 | Msa1286680:CDS |
| GCCACTACAATGTGTCACAA+AGG | 0.659746 | 8_3:+35340797 | None:intergenic |
| GTGTACAGTCGAAGCTACAT+GGG | 0.667081 | 8_3:-35340509 | Msa1286680:three_prime_UTR |
| AGATTTCTATGATGTAACTG+AGG | 0.680263 | 8_3:-35340999 | Msa1286680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATGTAATTTTTTTTG+TGG | - | chr8_3:35340723-35340742 | Msa1286680:CDS | 10.0% |
| !! | AAGATTTGAAAAATAAAAAA+TGG | - | chr8_3:35341044-35341063 | Msa1286680:CDS | 10.0% |
| !!! | TTTTAATGTAATTTTTTTTG+TGG | - | chr8_3:35340723-35340742 | Msa1286680:CDS | 10.0% |
| !! | AAGATTTGAAAAATAAAAAA+TGG | - | chr8_3:35341044-35341063 | Msa1286680:CDS | 10.0% |
| !! | AACCAATAAAAAAAAAAAAG+TGG | - | chr8_3:35340421-35340440 | Msa1286680:three_prime_UTR | 15.0% |
| !!! | TACTTTTTTTTTTTGAAGAA+AGG | + | chr8_3:35340447-35340466 | None:intergenic | 15.0% |
| !! | AAATTTACTACAAAAATAAG+AGG | + | chr8_3:35340514-35340533 | None:intergenic | 15.0% |
| !!! | TAGTATTAATTTTGTTTTTG+AGG | - | chr8_3:35341162-35341181 | Msa1286680:five_prime_UTR | 15.0% |
| !!! | AGTATTAATTTTGTTTTTGA+GGG | - | chr8_3:35341163-35341182 | Msa1286680:five_prime_UTR | 15.0% |
| !! | AACCAATAAAAAAAAAAAAG+TGG | - | chr8_3:35340421-35340440 | Msa1286680:three_prime_UTR | 15.0% |
| !!! | TACTTTTTTTTTTTGAAGAA+AGG | + | chr8_3:35340447-35340466 | None:intergenic | 15.0% |
| !! | AAATTTACTACAAAAATAAG+AGG | + | chr8_3:35340514-35340533 | None:intergenic | 15.0% |
| !!! | TAGTATTAATTTTGTTTTTG+AGG | - | chr8_3:35341162-35341181 | Msa1286680:five_prime_UTR | 15.0% |
| !!! | AGTATTAATTTTGTTTTTGA+GGG | - | chr8_3:35341163-35341182 | Msa1286680:five_prime_UTR | 15.0% |
| !! | GGTAATAAATTAAAACTAAG+AGG | - | chr8_3:35340685-35340704 | Msa1286680:exon | 20.0% |
| !! | AATAGTAATGTAGAAAGAAA+TGG | - | chr8_3:35341019-35341038 | Msa1286680:CDS | 20.0% |
| !! | AAAAGAAAAAGGCAATAAAA+TGG | + | chr8_3:35341084-35341103 | None:intergenic | 20.0% |
| !!! | GTATTAATTTTGTTTTTGAG+GGG | - | chr8_3:35341164-35341183 | Msa1286680:five_prime_UTR | 20.0% |
| !!! | TATTAATTTTGTTTTTGAGG+GGG | - | chr8_3:35341165-35341184 | Msa1286680:five_prime_UTR | 20.0% |
| !! | GGTAATAAATTAAAACTAAG+AGG | - | chr8_3:35340685-35340704 | Msa1286680:exon | 20.0% |
| !! | AATAGTAATGTAGAAAGAAA+TGG | - | chr8_3:35341019-35341038 | Msa1286680:CDS | 20.0% |
| !! | AAAAGAAAAAGGCAATAAAA+TGG | + | chr8_3:35341084-35341103 | None:intergenic | 20.0% |
| !!! | GTATTAATTTTGTTTTTGAG+GGG | - | chr8_3:35341164-35341183 | Msa1286680:five_prime_UTR | 20.0% |
| !!! | TATTAATTTTGTTTTTGAGG+GGG | - | chr8_3:35341165-35341184 | Msa1286680:five_prime_UTR | 20.0% |
| !!! | GGCCACTTTTTTTTTTTTAT+TGG | + | chr8_3:35340426-35340445 | None:intergenic | 25.0% |
| ! | AGTTACATCATAGAAATCTA+GGG | + | chr8_3:35340633-35340652 | None:intergenic | 25.0% |
| ! | TATAAATCGAGCTATATCAA+TGG | + | chr8_3:35340660-35340679 | None:intergenic | 25.0% |
| ! | TATAGCTCGATTTATAAAGA+AGG | - | chr8_3:35340664-35340683 | Msa1286680:three_prime_UTR | 25.0% |
| ! | AAACTAAGAGGATTGTTTAT+TGG | - | chr8_3:35340697-35340716 | Msa1286680:CDS | 25.0% |
| ! | GATATGTTGTTAATTATTGC+AGG | - | chr8_3:35340756-35340775 | Msa1286680:CDS | 25.0% |
| ! | AATTATTGCAGGAATTTGAT+AGG | - | chr8_3:35340767-35340786 | Msa1286680:CDS | 25.0% |
| ! | ATTATTGCAGGAATTTGATA+GGG | - | chr8_3:35340768-35340787 | Msa1286680:CDS | 25.0% |
| !!! | TGCTTCATCTATTTTTGTAT+AGG | - | chr8_3:35340859-35340878 | Msa1286680:intron | 25.0% |
| !!! | CTATTTTTGTATAGGTAGTA+TGG | - | chr8_3:35340867-35340886 | Msa1286680:intron | 25.0% |
| !! | GATAGTATCAATTTTCTTAC+AGG | - | chr8_3:35341191-35341210 | Msa1286680:five_prime_UTR | 25.0% |
| !!! | GGCCACTTTTTTTTTTTTAT+TGG | + | chr8_3:35340426-35340445 | None:intergenic | 25.0% |
| ! | AGTTACATCATAGAAATCTA+GGG | + | chr8_3:35340633-35340652 | None:intergenic | 25.0% |
| ! | TATAAATCGAGCTATATCAA+TGG | + | chr8_3:35340660-35340679 | None:intergenic | 25.0% |
| ! | TATAGCTCGATTTATAAAGA+AGG | - | chr8_3:35340664-35340683 | Msa1286680:three_prime_UTR | 25.0% |
| ! | AAACTAAGAGGATTGTTTAT+TGG | - | chr8_3:35340697-35340716 | Msa1286680:CDS | 25.0% |
| ! | GATATGTTGTTAATTATTGC+AGG | - | chr8_3:35340756-35340775 | Msa1286680:CDS | 25.0% |
| ! | AATTATTGCAGGAATTTGAT+AGG | - | chr8_3:35340767-35340786 | Msa1286680:CDS | 25.0% |
| ! | ATTATTGCAGGAATTTGATA+GGG | - | chr8_3:35340768-35340787 | Msa1286680:CDS | 25.0% |
| !!! | TGCTTCATCTATTTTTGTAT+AGG | - | chr8_3:35340859-35340878 | Msa1286680:intron | 25.0% |
| !!! | CTATTTTTGTATAGGTAGTA+TGG | - | chr8_3:35340867-35340886 | Msa1286680:intron | 25.0% |
| !! | GATAGTATCAATTTTCTTAC+AGG | - | chr8_3:35341191-35341210 | Msa1286680:five_prime_UTR | 25.0% |
| ! | TTGCATAGTTTGAAGCATAT+CGG | + | chr8_3:35340582-35340601 | None:intergenic | 30.0% |
| CAGTTACATCATAGAAATCT+AGG | + | chr8_3:35340634-35340653 | None:intergenic | 30.0% | |
| AGATTTCTATGATGTAACTG+AGG | - | chr8_3:35340634-35340653 | Msa1286680:three_prime_UTR | 30.0% | |
| ! | TATGGCAATTTTGCTCTTTA+AGG | - | chr8_3:35340885-35340904 | Msa1286680:intron | 30.0% |
| ! | ATGGCAATTTTGCTCTTTAA+GGG | - | chr8_3:35340886-35340905 | Msa1286680:intron | 30.0% |
| ! | TATTGCCTTTTTCTTTTGTG+AGG | - | chr8_3:35341087-35341106 | Msa1286680:CDS | 30.0% |
| ! | ATTGCCTTTTTCTTTTGTGA+GGG | - | chr8_3:35341088-35341107 | Msa1286680:CDS | 30.0% |
| ! | TTGCATAGTTTGAAGCATAT+CGG | + | chr8_3:35340582-35340601 | None:intergenic | 30.0% |
| CAGTTACATCATAGAAATCT+AGG | + | chr8_3:35340634-35340653 | None:intergenic | 30.0% | |
| AGATTTCTATGATGTAACTG+AGG | - | chr8_3:35340634-35340653 | Msa1286680:three_prime_UTR | 30.0% | |
| ! | TATGGCAATTTTGCTCTTTA+AGG | - | chr8_3:35340885-35340904 | Msa1286680:intron | 30.0% |
| ! | ATGGCAATTTTGCTCTTTAA+GGG | - | chr8_3:35340886-35340905 | Msa1286680:intron | 30.0% |
| ! | TATTGCCTTTTTCTTTTGTG+AGG | - | chr8_3:35341087-35341106 | Msa1286680:CDS | 30.0% |
| ! | ATTGCCTTTTTCTTTTGTGA+GGG | - | chr8_3:35341088-35341107 | Msa1286680:CDS | 30.0% |
| GCACAAGAGTAGAACAAAAT+AGG | + | chr8_3:35340471-35340490 | None:intergenic | 35.0% | |
| CTTCAATTCATCATGCTAGA+AGG | - | chr8_3:35340536-35340555 | Msa1286680:three_prime_UTR | 35.0% | |
| ! | ATCATAGAAATCTAGGGCTT+TGG | + | chr8_3:35340627-35340646 | None:intergenic | 35.0% |
| AAATCAGTTCTCAGCAATAG+AGG | - | chr8_3:35340933-35340952 | Msa1286680:intron | 35.0% | |
| TTAGCCCTCACAAAAGAAAA+AGG | + | chr8_3:35341095-35341114 | None:intergenic | 35.0% | |
| GCACAAGAGTAGAACAAAAT+AGG | + | chr8_3:35340471-35340490 | None:intergenic | 35.0% | |
| CTTCAATTCATCATGCTAGA+AGG | - | chr8_3:35340536-35340555 | Msa1286680:three_prime_UTR | 35.0% | |
| ! | ATCATAGAAATCTAGGGCTT+TGG | + | chr8_3:35340627-35340646 | None:intergenic | 35.0% |
| AAATCAGTTCTCAGCAATAG+AGG | - | chr8_3:35340933-35340952 | Msa1286680:intron | 35.0% | |
| TTAGCCCTCACAAAAGAAAA+AGG | + | chr8_3:35341095-35341114 | None:intergenic | 35.0% | |
| ATTCATCATGCTAGAAGGCA+AGG | - | chr8_3:35340541-35340560 | Msa1286680:three_prime_UTR | 40.0% | |
| CAGGAATTTGATAGGGTTCA+TGG | - | chr8_3:35340775-35340794 | Msa1286680:CDS | 40.0% | |
| !!! | TGCATTGTAGGCACTGATTT+TGG | - | chr8_3:35340811-35340830 | Msa1286680:CDS | 40.0% |
| TCCTTTGTGACACATTGTAG+TGG | - | chr8_3:35340835-35340854 | Msa1286680:CDS | 40.0% | |
| !! | AACTGATTTTCCTCTGCTTG+TGG | + | chr8_3:35340922-35340941 | None:intergenic | 40.0% |
| ATTCATCATGCTAGAAGGCA+AGG | - | chr8_3:35340541-35340560 | Msa1286680:three_prime_UTR | 40.0% | |
| CAGGAATTTGATAGGGTTCA+TGG | - | chr8_3:35340775-35340794 | Msa1286680:CDS | 40.0% | |
| !!! | TGCATTGTAGGCACTGATTT+TGG | - | chr8_3:35340811-35340830 | Msa1286680:CDS | 40.0% |
| TCCTTTGTGACACATTGTAG+TGG | - | chr8_3:35340835-35340854 | Msa1286680:CDS | 40.0% | |
| !! | AACTGATTTTCCTCTGCTTG+TGG | + | chr8_3:35340922-35340941 | None:intergenic | 40.0% |
| TTTGATAGGGTTCATGGACC+TGG | - | chr8_3:35340781-35340800 | Msa1286680:CDS | 45.0% | |
| GCCACTACAATGTGTCACAA+AGG | + | chr8_3:35340839-35340858 | None:intergenic | 45.0% | |
| ! | TTGCTCTTTAAGGGATCTGC+TGG | - | chr8_3:35340895-35340914 | Msa1286680:intron | 45.0% |
| TGTGTACAGTCGAAGCTACA+TGG | - | chr8_3:35341123-35341142 | Msa1286680:five_prime_UTR | 45.0% | |
| GTGTACAGTCGAAGCTACAT+GGG | - | chr8_3:35341124-35341143 | Msa1286680:five_prime_UTR | 45.0% | |
| TTTGATAGGGTTCATGGACC+TGG | - | chr8_3:35340781-35340800 | Msa1286680:CDS | 45.0% | |
| GCCACTACAATGTGTCACAA+AGG | + | chr8_3:35340839-35340858 | None:intergenic | 45.0% | |
| ! | TTGCTCTTTAAGGGATCTGC+TGG | - | chr8_3:35340895-35340914 | Msa1286680:intron | 45.0% |
| TGTGTACAGTCGAAGCTACA+TGG | - | chr8_3:35341123-35341142 | Msa1286680:five_prime_UTR | 45.0% | |
| GTGTACAGTCGAAGCTACAT+GGG | - | chr8_3:35341124-35341143 | Msa1286680:five_prime_UTR | 45.0% | |
| CTAGAAGGCAAGGCAGTGAT+TGG | - | chr8_3:35340551-35340570 | Msa1286680:three_prime_UTR | 50.0% | |
| ATAGGGTTCATGGACCTGGT+TGG | - | chr8_3:35340785-35340804 | Msa1286680:CDS | 50.0% | |
| CCTACAATGCATTGCCAACC+AGG | + | chr8_3:35340802-35340821 | None:intergenic | 50.0% | |
| CCTGGTTGGCAATGCATTGT+AGG | - | chr8_3:35340799-35340818 | Msa1286680:CDS | 50.0% | |
| CTAGAAGGCAAGGCAGTGAT+TGG | - | chr8_3:35340551-35340570 | Msa1286680:three_prime_UTR | 50.0% | |
| ATAGGGTTCATGGACCTGGT+TGG | - | chr8_3:35340785-35340804 | Msa1286680:CDS | 50.0% | |
| CCTACAATGCATTGCCAACC+AGG | + | chr8_3:35340802-35340821 | None:intergenic | 50.0% | |
| CCTGGTTGGCAATGCATTGT+AGG | - | chr8_3:35340799-35340818 | Msa1286680:CDS | 50.0% | |
| ATCTGCTGGTCCACAAGCAG+AGG | - | chr8_3:35340909-35340928 | Msa1286680:intron | 55.0% | |
| ATCTGCTGGTCCACAAGCAG+AGG | - | chr8_3:35340909-35340928 | Msa1286680:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 35340416 | 35341239 | 35340416 | ID=Msa1286680;Name=Msa1286680 |
| chr8_3 | mRNA | 35340416 | 35341239 | 35340416 | ID=Msa1286680-mRNA-1;Parent=Msa1286680;Name=Msa1286680-mRNA-1;_AED=0.02;_eAED=0.02;_QI=132|1|1|1|1|1|2|270|109 |
| chr8_3 | exon | 35340416 | 35340877 | 35340416 | ID=Msa1286680-mRNA-1:exon:10402;Parent=Msa1286680-mRNA-1 |
| chr8_3 | exon | 35340970 | 35341239 | 35340970 | ID=Msa1286680-mRNA-1:exon:10401;Parent=Msa1286680-mRNA-1 |
| chr8_3 | five_prime_UTR | 35341108 | 35341239 | 35341108 | ID=Msa1286680-mRNA-1:five_prime_utr;Parent=Msa1286680-mRNA-1 |
| chr8_3 | CDS | 35340970 | 35341107 | 35340970 | ID=Msa1286680-mRNA-1:cds;Parent=Msa1286680-mRNA-1 |
| chr8_3 | CDS | 35340686 | 35340877 | 35340686 | ID=Msa1286680-mRNA-1:cds;Parent=Msa1286680-mRNA-1 |
| chr8_3 | three_prime_UTR | 35340416 | 35340685 | 35340416 | ID=Msa1286680-mRNA-1:three_prime_utr;Parent=Msa1286680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
