Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381910 | XP_003608318.2 | 97.353 | 340 | 9 | 0 | 1 | 340 | 65 | 404 | 0.0 | 679 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381910 | sp|Q9LPM9|BCAT6_ARATH | 63.609 | 338 | 120 | 2 | 4 | 340 | 17 | 352 | 3.93e-163 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381910 | A0A396IFU1 | 97.353 | 340 | 9 | 0 | 1 | 340 | 65 | 404 | 0.0 | 679 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0073110 | Msa1381910 | 0.805959 | 1.037742e-49 | -8.615850e-47 |
| Msa0106540 | Msa1381910 | 0.806094 | 9.720922e-50 | -8.615850e-47 |
| Msa1361980 | Msa1381910 | 0.820254 | 7.557095e-53 | -8.615850e-47 |
| Msa1365230 | Msa1381910 | 0.821063 | 4.926389e-53 | -8.615850e-47 |
| Msa1381900 | Msa1381910 | 0.807312 | 5.374200e-50 | -8.615850e-47 |
| Msa1381910 | Msa1387450 | -0.805800 | 1.120437e-49 | -8.615850e-47 |
| Msa1381910 | Msa1405830 | 0.803489 | 3.402605e-49 | -8.615850e-47 |
| Msa1381910 | Msa1407810 | 0.811071 | 8.410481e-51 | -8.615850e-47 |
| Msa1381910 | Msa1433360 | 0.815056 | 1.123883e-51 | -8.615850e-47 |
| Msa1381910 | Msa1437780 | 0.811070 | 8.415772e-51 | -8.615850e-47 |
| Msa0619300 | Msa1381910 | 0.807080 | 6.020590e-50 | -8.615850e-47 |
| Msa0654610 | Msa1381910 | 0.980011 | 3.034583e-149 | -8.615850e-47 |
| Msa0685390 | Msa1381910 | -0.805209 | 1.490571e-49 | -8.615850e-47 |
| Msa0704690 | Msa1381910 | 0.814557 | 1.450249e-51 | -8.615850e-47 |
| Msa0745140 | Msa1381910 | 0.809152 | 2.179248e-50 | -8.615850e-47 |
| Msa0776640 | Msa1381910 | 0.808728 | 2.685133e-50 | -8.615850e-47 |
| Msa0825920 | Msa1381910 | 0.808525 | 2.967061e-50 | -8.615850e-47 |
| Msa0121320 | Msa1381910 | 0.804393 | 2.207001e-49 | -8.615850e-47 |
| Msa0211460 | Msa1381910 | 0.804798 | 1.816645e-49 | -8.615850e-47 |
| Msa1250660 | Msa1381910 | 0.816343 | 5.806463e-52 | -8.615850e-47 |
| Msa1265570 | Msa1381910 | 0.823189 | 1.583780e-53 | -8.615850e-47 |
| Msa1266120 | Msa1381910 | -0.806814 | 6.853001e-50 | -8.615850e-47 |
| Msa1284020 | Msa1381910 | 0.815073 | 1.114347e-51 | -8.615850e-47 |
| Msa1322980 | Msa1381910 | 0.810881 | 9.246919e-51 | -8.615850e-47 |
| Msa1334670 | Msa1381910 | 0.827037 | 1.952137e-54 | -8.615850e-47 |
| Msa0364910 | Msa1381910 | -0.804877 | 1.749372e-49 | -8.615850e-47 |
| Msa0371350 | Msa1381910 | -0.811405 | 7.118471e-51 | -8.615850e-47 |
| Msa0412580 | Msa1381910 | -0.802691 | 4.975545e-49 | -8.615850e-47 |
| Msa0419420 | Msa1381910 | -0.802651 | 5.069852e-49 | -8.615850e-47 |
| Msa0438680 | Msa1381910 | -0.805077 | 1.588722e-49 | -8.615850e-47 |
| Msa0481670 | Msa1381910 | 0.801359 | 9.344043e-49 | -8.615850e-47 |
| Msa1078590 | Msa1381910 | -0.805115 | 1.560045e-49 | -8.615850e-47 |
| Msa1078760 | Msa1381910 | -0.812877 | 3.398812e-51 | -8.615850e-47 |
| Msa1088740 | Msa1381910 | -0.802010 | 6.873064e-49 | -8.615850e-47 |
| Msa0240590 | Msa1381910 | -0.803498 | 3.388096e-49 | -8.615850e-47 |
| Msa0267450 | Msa1381910 | -0.805855 | 1.091442e-49 | -8.615850e-47 |
| Msa0267510 | Msa1381910 | -0.809439 | 1.891458e-50 | -8.615850e-47 |
| Msa0279090 | Msa1381910 | -0.807290 | 5.432197e-50 | -8.615850e-47 |
| Msa0307430 | Msa1381910 | 0.814442 | 1.537492e-51 | -8.615850e-47 |
| Msa0337970 | Msa1381910 | 0.801649 | 8.150049e-49 | -8.615850e-47 |
| Msa1130860 | Msa1381910 | -0.805342 | 1.398416e-49 | -8.615850e-47 |
| Msa1130920 | Msa1381910 | -0.807484 | 4.942069e-50 | -8.615850e-47 |
| Msa1169590 | Msa1381910 | -0.810757 | 9.834748e-51 | -8.615850e-47 |
| Msa1220720 | Msa1381910 | 0.819542 | 1.099942e-52 | -8.615850e-47 |
| Msa0567330 | Msa1381910 | 0.810578 | 1.075110e-50 | -8.615850e-47 |
| Msa0567570 | Msa1381910 | 0.810095 | 1.366472e-50 | -8.615850e-47 |
| Msa0576320 | Msa1381910 | 0.806791 | 6.929065e-50 | -8.615850e-47 |
| Msa0865420 | Msa1381910 | 0.804047 | 2.605834e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381910 | MtrunA17_Chr4g0049241 | 97.353 | 340 | 9 | 0 | 1 | 340 | 65 | 404 | 0.0 | 679 |
| Msa1381910 | MtrunA17_Chr3g0135321 | 60.355 | 338 | 130 | 2 | 5 | 340 | 52 | 387 | 1.08e-154 | 439 |
| Msa1381910 | MtrunA17_Chr5g0400811 | 60.714 | 336 | 128 | 2 | 6 | 339 | 74 | 407 | 5.80e-150 | 428 |
| Msa1381910 | MtrunA17_Chr4g0049231 | 56.213 | 338 | 144 | 2 | 5 | 340 | 22 | 357 | 2.37e-142 | 407 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381910 | AT1G50110.1 | 63.609 | 338 | 120 | 2 | 4 | 340 | 17 | 352 | 3.99e-164 | 462 |
| Msa1381910 | AT1G50090.1 | 62.611 | 337 | 123 | 2 | 5 | 340 | 21 | 355 | 5.51e-160 | 452 |
| Msa1381910 | AT1G10070.1 | 60.651 | 338 | 129 | 2 | 5 | 340 | 53 | 388 | 1.42e-158 | 449 |
| Msa1381910 | AT1G10070.2 | 60.651 | 338 | 129 | 2 | 5 | 340 | 53 | 388 | 1.42e-158 | 449 |
| Msa1381910 | AT1G50110.2 | 63.950 | 319 | 112 | 2 | 23 | 340 | 1 | 317 | 2.90e-154 | 436 |
| Msa1381910 | AT1G10060.2 | 60.831 | 337 | 128 | 2 | 5 | 339 | 49 | 383 | 3.10e-151 | 431 |
| Msa1381910 | AT1G10060.5 | 61.128 | 337 | 127 | 2 | 5 | 339 | 145 | 479 | 9.20e-150 | 430 |
| Msa1381910 | AT5G65780.1 | 60.237 | 337 | 129 | 3 | 6 | 339 | 80 | 414 | 1.42e-149 | 427 |
| Msa1381910 | AT1G10070.3 | 60.938 | 320 | 121 | 2 | 23 | 340 | 1 | 318 | 5.29e-149 | 422 |
| Msa1381910 | AT3G49680.2 | 60.472 | 339 | 128 | 4 | 6 | 340 | 75 | 411 | 5.50e-148 | 423 |
| Msa1381910 | AT3G49680.1 | 60.472 | 339 | 128 | 4 | 6 | 340 | 77 | 413 | 5.51e-148 | 423 |
| Msa1381910 | AT3G19710.1 | 55.917 | 338 | 146 | 2 | 4 | 340 | 16 | 351 | 2.84e-147 | 419 |
| Msa1381910 | AT1G10060.3 | 61.442 | 319 | 119 | 2 | 23 | 339 | 1 | 317 | 1.03e-142 | 406 |
| Msa1381910 | AT1G10060.7 | 61.921 | 302 | 111 | 2 | 5 | 304 | 49 | 348 | 1.46e-135 | 390 |
| Msa1381910 | AT1G10060.4 | 62.252 | 302 | 110 | 2 | 5 | 304 | 145 | 444 | 4.57e-134 | 390 |
| Msa1381910 | AT1G10060.1 | 60.800 | 250 | 94 | 2 | 5 | 252 | 49 | 296 | 1.28e-109 | 322 |
| Msa1381910 | AT1G10060.6 | 60.800 | 250 | 94 | 2 | 5 | 252 | 145 | 392 | 2.95e-108 | 322 |
Find 107 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTTCAGTTTATTATAAA+TGG | 0.147141 | tig0020460:+57806 | None:intergenic |
| CGCCATTGATTTGGGTTATA+AGG | 0.149101 | tig0020460:-58476 | Msa1381910:intron |
| GTTTATTATAAATGGAAATT+TGG | 0.163762 | tig0020460:+57814 | None:intergenic |
| AATACATACCCAACGTTTAT+TGG | 0.212789 | tig0020460:+59702 | None:intergenic |
| GTCCAAGTAGATTGAGAAAT+TGG | 0.258521 | tig0020460:-57978 | Msa1381910:exon |
| CATAGACATCGCCATTGATT+TGG | 0.259021 | tig0020460:-58485 | Msa1381910:CDS |
| CATAATTTCCTCCACTGATA+TGG | 0.286519 | tig0020460:+58323 | None:intergenic |
| CTAATCATCAATAGTATGTT+TGG | 0.287341 | tig0020460:-57912 | Msa1381910:three_prime_UTR |
| TGTTGCATCTGTAACATATA+AGG | 0.310394 | tig0020460:-58253 | Msa1381910:CDS |
| GAAATTATGCTGACATCAAT+TGG | 0.320437 | tig0020460:-60537 | Msa1381910:CDS |
| GGAAAGGGACGCTTTATCTT+AGG | 0.336223 | tig0020460:-59379 | Msa1381910:CDS |
| CAAACATACTATTGATGATT+AGG | 0.337825 | tig0020460:+57913 | None:intergenic |
| TTGTTCTTGGATTCAGCAAC+TGG | 0.355547 | tig0020460:-58754 | Msa1381910:CDS |
| ATAGACATCGCCATTGATTT+GGG | 0.368721 | tig0020460:-58484 | Msa1381910:CDS |
| GAGAAGAGAAATAAAGATCT+AGG | 0.380104 | tig0020460:+60967 | None:intergenic |
| ACCTCGTGGTACTTTCCAAC+AGG | 0.385531 | tig0020460:+59281 | None:intergenic |
| GTTTGAATGGAGGTTGTTGT+AGG | 0.395642 | tig0020460:+60941 | None:intergenic |
| AGGCCTTTGCTGATGGGAAC+AGG | 0.410408 | tig0020460:-59359 | Msa1381910:CDS |
| GCTGCTGGTATCATAAACTA+TGG | 0.421561 | tig0020460:-60397 | Msa1381910:CDS |
| TATTTATAGGGAATCTTTGA+GGG | 0.423848 | tig0020460:-59874 | Msa1381910:intron |
| TGCCAATTTCTCAATCTACT+TGG | 0.427171 | tig0020460:+57976 | None:intergenic |
| TTATTTATAGGGAATCTTTG+AGG | 0.451052 | tig0020460:-59875 | Msa1381910:intron |
| ATACTGGATGGAATACAAAC+AGG | 0.454406 | tig0020460:-58029 | Msa1381910:CDS |
| TTATCTTAGGCCTTTGCTGA+TGG | 0.459569 | tig0020460:-59366 | Msa1381910:CDS |
| TATAAATGGAAATTTGGATC+CGG | 0.459633 | tig0020460:+57820 | None:intergenic |
| ATAGCTGGCAGTGGTGGAAC+AGG | 0.460699 | tig0020460:-59088 | Msa1381910:CDS |
| CAATGTTTCCATAGCGAATG+AGG | 0.461717 | tig0020460:+60431 | None:intergenic |
| TCTCCTCTGGTCGGAAAAGA+AGG | 0.461828 | tig0020460:+59818 | None:intergenic |
| TATCTTAGGCCTTTGCTGAT+GGG | 0.462963 | tig0020460:-59365 | Msa1381910:CDS |
| CATGTCATGAAATGCACAAA+AGG | 0.463428 | tig0020460:-60475 | Msa1381910:CDS |
| AGAATAGATCCATCTATTGC+CGG | 0.463647 | tig0020460:+58532 | None:intergenic |
| CTCATTTATTGCTCCCCTGT+TGG | 0.463936 | tig0020460:-59296 | Msa1381910:CDS |
| TTGAAACAGGTACCTCCTCC+AGG | 0.466899 | tig0020460:-59401 | Msa1381910:intron |
| AAGAAGGATTCGCCCATCTT+CGG | 0.471480 | tig0020460:+59834 | None:intergenic |
| AGTTCTTGCCAATAAACGTT+GGG | 0.472787 | tig0020460:-59710 | Msa1381910:intron |
| GAATGCTCTACGCATGAAGA+TGG | 0.475110 | tig0020460:-59797 | Msa1381910:CDS |
| ATCAATGGCGATGTCTATGA+TGG | 0.477143 | tig0020460:+58489 | None:intergenic |
| GATTTCTGTTGCAAACATAC+AGG | 0.479435 | tig0020460:-57890 | Msa1381910:three_prime_UTR |
| TGCAGAGCTGAATATAAAAC+AGG | 0.487998 | tig0020460:-58083 | Msa1381910:intron |
| AGATAAAGCGTCCCTTTCCC+TGG | 0.488127 | tig0020460:+59383 | None:intergenic |
| AAAGCATATAGAACCGAAGA+TGG | 0.494591 | tig0020460:-59847 | Msa1381910:CDS |
| TGTACTCAGGTGATGGAGCC+GGG | 0.495014 | tig0020460:+59324 | None:intergenic |
| AACAGGAGCTGCATTAGGCC+CGG | 0.496200 | tig0020460:-59342 | Msa1381910:CDS |
| ATAGATGGATCTATTCTGCC+TGG | 0.500850 | tig0020460:-58526 | Msa1381910:CDS |
| TACCTTATAACCCAAATCAA+TGG | 0.507754 | tig0020460:+58474 | None:intergenic |
| GTGTACTCAGGTGATGGAGC+CGG | 0.507861 | tig0020460:+59323 | None:intergenic |
| AAGCTGCTACTAAGTTTGAA+TGG | 0.509769 | tig0020460:+60928 | None:intergenic |
| TGTTGCAAACATACAGGTAG+AGG | 0.514094 | tig0020460:-57884 | Msa1381910:three_prime_UTR |
| AATGCTCTACGCATGAAGAT+GGG | 0.515215 | tig0020460:-59796 | Msa1381910:CDS |
| ATGCGTAGAGCATTCTCCTC+TGG | 0.524923 | tig0020460:+59805 | None:intergenic |
| ATGGGAACAGGAGCTGCATT+AGG | 0.526658 | tig0020460:-59347 | Msa1381910:CDS |
| TAGATGGATCTATTCTGCCT+GGG | 0.527089 | tig0020460:-58525 | Msa1381910:CDS |
| CGATCAATAGCTGGCAGTGG+TGG | 0.529542 | tig0020460:-59094 | Msa1381910:CDS |
| AGGTACCTCCTCCAGGGAAA+GGG | 0.530899 | tig0020460:-59394 | Msa1381910:CDS |
| AAATTATGCTGACATCAATT+GGG | 0.535395 | tig0020460:-60536 | Msa1381910:CDS |
| ATGACATGCATGTAATCTGT+TGG | 0.538379 | tig0020460:+60490 | None:intergenic |
| CAGGTACCTCCTCCAGGGAA+AGG | 0.544439 | tig0020460:-59395 | Msa1381910:CDS |
| CAAGGATCCCTCATTCGCTA+TGG | 0.546856 | tig0020460:-60439 | Msa1381910:CDS |
| AAATTTCATCGATCAATAGC+TGG | 0.549508 | tig0020460:-59103 | Msa1381910:CDS |
| TAGTTTATGATACCAGCAGC+CGG | 0.554250 | tig0020460:+60400 | None:intergenic |
| CGGAAGACTAAACTTAAAAG+TGG | 0.556487 | tig0020460:-59131 | Msa1381910:CDS |
| AGCGTCCCTTTCCCTGGAGG+AGG | 0.558749 | tig0020460:+59389 | None:intergenic |
| ATTGAGATAAGCCCGGCTGC+TGG | 0.560098 | tig0020460:-60412 | Msa1381910:CDS |
| TAAAGATCTAGGAAAAGAGA+AGG | 0.563696 | tig0020460:+60978 | None:intergenic |
| TCAACAAACTGCTCAACTGA+TGG | 0.571107 | tig0020460:+59748 | None:intergenic |
| CTGTAACATATAAGGAAACA+AGG | 0.572784 | tig0020460:-58245 | Msa1381910:intron |
| CAAGACATCAGAAAATCCAT+TGG | 0.572958 | tig0020460:+58774 | None:intergenic |
| TGGTATCATAAACTATGGAC+AGG | 0.579973 | tig0020460:-60392 | Msa1381910:intron |
| TAAATGAGAAATGTGTACTC+AGG | 0.581598 | tig0020460:+59311 | None:intergenic |
| GTAACTGAAGCAAAAGCCAA+TGG | 0.582493 | tig0020460:-58790 | Msa1381910:CDS |
| ATGCTCTACGCATGAAGATG+GGG | 0.583009 | tig0020460:-59795 | Msa1381910:CDS |
| AGTTTATGATACCAGCAGCC+GGG | 0.586157 | tig0020460:+60401 | None:intergenic |
| TGGAAACATTGAGATAAGCC+CGG | 0.589471 | tig0020460:-60419 | Msa1381910:CDS |
| AAACTACGAGGAATACTGGA+TGG | 0.599158 | tig0020460:-58041 | Msa1381910:CDS |
| AATACAAACAGGGCGTATTG+AGG | 0.599236 | tig0020460:-58018 | Msa1381910:CDS |
| GCTGGCAGTGGTGGAACAGG+AGG | 0.602903 | tig0020460:-59085 | Msa1381910:CDS |
| AAGCATATAGAACCGAAGAT+GGG | 0.603146 | tig0020460:-59846 | Msa1381910:CDS |
| GTGTGTGAATCTGCTTTGTG+TGG | 0.604347 | tig0020460:-57758 | Msa1381910:three_prime_UTR |
| CATCGATCAATAGCTGGCAG+TGG | 0.604641 | tig0020460:-59097 | Msa1381910:CDS |
| GCTCCTGTTCCCATCAGCAA+AGG | 0.605225 | tig0020460:+59356 | None:intergenic |
| GTGCAATATATTTGTTGTGA+AGG | 0.605535 | tig0020460:-58707 | Msa1381910:intron |
| CATAGAACGTTCCATATCAG+TGG | 0.605813 | tig0020460:-58334 | Msa1381910:CDS |
| CAATAAAACTCTGAACATGC+CGG | 0.609857 | tig0020460:-57839 | Msa1381910:three_prime_UTR |
| AGAAATGTGTACTCAGGTGA+TGG | 0.612357 | tig0020460:+59317 | None:intergenic |
| GCTGATGAAGTGTTCTGCAC+AGG | 0.613446 | tig0020460:-58297 | Msa1381910:CDS |
| TATGCTGACATCAATTGGGA+AGG | 0.614608 | tig0020460:-60532 | Msa1381910:CDS |
| CAGTTCTTGCCAATAAACGT+TGG | 0.616405 | tig0020460:-59711 | Msa1381910:CDS |
| AACTGCTCAACTGATGGTGA+TGG | 0.617477 | tig0020460:+59754 | None:intergenic |
| AATGTTTCCATAGCGAATGA+GGG | 0.619575 | tig0020460:+60432 | None:intergenic |
| AAGACTAAACTTAAAAGTGG+AGG | 0.620669 | tig0020460:-59128 | Msa1381910:CDS |
| GAGTGTTACTAATTATGCCC+CGG | 0.621088 | tig0020460:-59056 | Msa1381910:intron |
| TGCTCTACGCATGAAGATGG+GGG | 0.622391 | tig0020460:-59794 | Msa1381910:CDS |
| TGAAACAGGTACCTCCTCCA+GGG | 0.635669 | tig0020460:-59400 | Msa1381910:intron |
| CTGCTACTAAGTTTGAATGG+AGG | 0.640806 | tig0020460:+60931 | None:intergenic |
| AGAACGTTCCATATCAGTGG+AGG | 0.645297 | tig0020460:-58331 | Msa1381910:CDS |
| TACTGGATGGAATACAAACA+GGG | 0.652158 | tig0020460:-58028 | Msa1381910:CDS |
| GTAGAGCATTCTCCTCTGGT+CGG | 0.659032 | tig0020460:+59809 | None:intergenic |
| AGATGGATCTATTCTGCCTG+GGG | 0.660994 | tig0020460:-58524 | Msa1381910:CDS |
| ACAAGTATTATCATTTAACA+AGG | 0.662636 | tig0020460:+57950 | None:intergenic |
| CCTCGTGGTACTTTCCAACA+GGG | 0.667858 | tig0020460:+59282 | None:intergenic |
| TTCCAAGCTACTGGCTACAG+CGG | 0.669095 | tig0020460:+57705 | None:intergenic |
| TAAAGCGTCCCTTTCCCTGG+AGG | 0.677703 | tig0020460:+59386 | None:intergenic |
| ATATGTTACAGATGCAACAG+AGG | 0.681902 | tig0020460:+58257 | None:intergenic |
| GCAGCTTTCACACAATAACA+AGG | 0.698597 | tig0020460:-60912 | Msa1381910:intron |
| CTCGTGGTACTTTCCAACAG+GGG | 0.704735 | tig0020460:+59283 | None:intergenic |
| CCCTGTTGGAAAGTACCACG+AGG | 0.738152 | tig0020460:-59282 | Msa1381910:intron |
| GTTCTGCACAGGAACTGCAG+TGG | 0.751564 | tig0020460:-58286 | Msa1381910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAATTTTTTCATACAAAAA+CGG | + | tig0020460:58127-58146 | None:intergenic | 15.0% |
| !! | TACTATATATAAAGTAAACT+TGG | - | tig0020460:58650-58669 | Msa1381910:intron | 15.0% |
| !! | ACTATATATAAAGTAAACTT+GGG | - | tig0020460:58651-58670 | Msa1381910:intron | 15.0% |
| !!! | AAAATGGTTTCTTTATTTAT+AGG | - | tig0020460:58810-58829 | Msa1381910:intron | 15.0% |
| !!! | AAATGGTTTCTTTATTTATA+GGG | - | tig0020460:58811-58830 | Msa1381910:intron | 15.0% |
| !! | ATATATAATATTCAATTTGG+AGG | + | tig0020460:59726-59745 | None:intergenic | 15.0% |
| !!! | TGAATATTATATATTTTCCT+TGG | - | tig0020460:59732-59751 | Msa1381910:CDS | 15.0% |
| !! | TATAGATGATTAATGATTTA+TGG | - | tig0020460:60295-60314 | Msa1381910:intron | 15.0% |
| !! | AAAAATTGACTAAAATGAAA+GGG | + | tig0020460:60534-60553 | None:intergenic | 15.0% |
| !! | AAAAAATTGACTAAAATGAA+AGG | + | tig0020460:60535-60554 | None:intergenic | 15.0% |
| !!! | TTTTAGTCAATTTTTTTTGT+TGG | - | tig0020460:60539-60558 | Msa1381910:CDS | 15.0% |
| !! | GTTTATTATAAATGGAAATT+TGG | + | tig0020460:60886-60905 | None:intergenic | 15.0% |
| !! | AAAGAATAGTGTAATGAAAT+TGG | + | tig0020460:58018-58037 | None:intergenic | 20.0% |
| !! | ATGAAAAAATTACAGTGATA+TGG | - | tig0020460:58134-58153 | Msa1381910:intron | 20.0% |
| !! | TGAAAAAATTACAGTGATAT+GGG | - | tig0020460:58135-58154 | Msa1381910:intron | 20.0% |
| !! | TTATATTACAGTCACAATTA+CGG | - | tig0020460:58483-58502 | Msa1381910:CDS | 20.0% |
| !! | CTATATATAAAGTAAACTTG+GGG | - | tig0020460:58652-58671 | Msa1381910:intron | 20.0% |
| !! | TATATATAAAGTAAACTTGG+GGG | - | tig0020460:58653-58672 | Msa1381910:intron | 20.0% |
| !! | TATAAGTAAATTCAAATCCA+TGG | + | tig0020460:59445-59464 | None:intergenic | 20.0% |
| !!! | CTTATATTGTTTTGTTACTA+AGG | - | tig0020460:59459-59478 | Msa1381910:intron | 20.0% |
| !! | AAAATAAAAATTTAACAGGG+CGG | - | tig0020460:59546-59565 | Msa1381910:intron | 20.0% |
| !! | GTTTCATATTAATCTTGTTA+AGG | - | tig0020460:60125-60144 | Msa1381910:intron | 20.0% |
| !! | AGAAAATAATGACAAACATT+GGG | + | tig0020460:60262-60281 | None:intergenic | 20.0% |
| !! | TAGAAAATAATGACAAACAT+TGG | + | tig0020460:60263-60282 | None:intergenic | 20.0% |
| !! | ACAAGTATTATCATTTAACA+AGG | + | tig0020460:60750-60769 | None:intergenic | 20.0% |
| !! | CAAGTTCAGTTTATTATAAA+TGG | + | tig0020460:60894-60913 | None:intergenic | 20.0% |
| ! | AACATTACATCACTTATCAA+TGG | + | tig0020460:57817-57836 | None:intergenic | 25.0% |
| !! | AATGTCTTTTTACGAAATCA+TGG | - | tig0020460:57876-57895 | Msa1381910:three_prime_UTR | 25.0% |
| !!! | TAGATTTTAGAAACTCATAG+TGG | - | tig0020460:57950-57969 | Msa1381910:three_prime_UTR | 25.0% |
| ! | AAATTATGCTGACATCAATT+GGG | - | tig0020460:58161-58180 | Msa1381910:intron | 25.0% |
| !! | AATTTAAAACCATCGTACAA+GGG | + | tig0020460:58363-58382 | None:intergenic | 25.0% |
| !! | CTGTAATATAACGAATTTTG+AGG | + | tig0020460:58474-58493 | None:intergenic | 25.0% |
| !!! | ACTAACTTTCATGTTTTAAC+AGG | + | tig0020460:58569-58588 | None:intergenic | 25.0% |
| !!! | TTAGTGCATTTTTAGACATT+TGG | + | tig0020460:58792-58811 | None:intergenic | 25.0% |
| ! | TGTCTAAAAATGCACTAAAA+TGG | - | tig0020460:58794-58813 | Msa1381910:CDS | 25.0% |
| ! | TTATTTATAGGGAATCTTTG+AGG | - | tig0020460:58822-58841 | Msa1381910:intron | 25.0% |
| ! | TATTTATAGGGAATCTTTGA+GGG | - | tig0020460:58823-58842 | Msa1381910:intron | 25.0% |
| ! | GAAGTCATGATATTAAATTG+CGG | + | tig0020460:59217-59236 | None:intergenic | 25.0% |
| ! | CAATTTAATATCATGACTTC+AGG | - | tig0020460:59217-59236 | Msa1381910:intron | 25.0% |
| !! | AATGATGCATATTGTTACTT+AGG | - | tig0020460:59804-59823 | Msa1381910:CDS | 25.0% |
| ! | TTTGTAACAAAACTATGTTC+AGG | - | tig0020460:60339-60358 | Msa1381910:intron | 25.0% |
| ! | TTGTGTTTAGCATTATCATT+AGG | + | tig0020460:60579-60598 | None:intergenic | 25.0% |
| !! | TAATGATAATGCTAAACACA+AGG | - | tig0020460:60578-60597 | Msa1381910:intron | 25.0% |
| !! | CAAACATACTATTGATGATT+AGG | + | tig0020460:60787-60806 | None:intergenic | 25.0% |
| ! | CTAATCATCAATAGTATGTT+TGG | - | tig0020460:60785-60804 | Msa1381910:intron | 25.0% |
| ! | TATAAATGGAAATTTGGATC+CGG | + | tig0020460:60880-60899 | None:intergenic | 25.0% |
| TAAAGATCTAGGAAAAGAGA+AGG | + | tig0020460:57722-57741 | None:intergenic | 30.0% | |
| GAGAAGAGAAATAAAGATCT+AGG | + | tig0020460:57733-57752 | None:intergenic | 30.0% | |
| TTACATCACTTATCAATGGT+TGG | + | tig0020460:57813-57832 | None:intergenic | 30.0% | |
| AAAAATTACAGTGATATGGG+TGG | - | tig0020460:58138-58157 | Msa1381910:intron | 30.0% | |
| GAAATTATGCTGACATCAAT+TGG | - | tig0020460:58160-58179 | Msa1381910:intron | 30.0% | |
| ! | AAAGGAGAAAAGTTTTCACA+AGG | - | tig0020460:58240-58259 | Msa1381910:intron | 30.0% |
| ! | CAATTTAAAACCATCGTACA+AGG | + | tig0020460:58364-58383 | None:intergenic | 30.0% |
| !!! | TGTACGATGGTTTTAAATTG+AGG | - | tig0020460:58364-58383 | Msa1381910:intron | 30.0% |
| !!! | ATGGTTTTAAATTGAGGTTG+CGG | - | tig0020460:58370-58389 | Msa1381910:intron | 30.0% |
| !! | GTTACACTGGTTTATATTGT+TGG | - | tig0020460:58398-58417 | Msa1381910:intron | 30.0% |
| CTTAAGTGTAAAGTAGTACA+AGG | + | tig0020460:58534-58553 | None:intergenic | 30.0% | |
| AATACATACCCAACGTTTAT+TGG | + | tig0020460:58998-59017 | None:intergenic | 30.0% | |
| TGAGCTTTCAAAATTGAAAC+AGG | - | tig0020460:59283-59302 | Msa1381910:CDS | 30.0% | |
| TAAATGAGAAATGTGTACTC+AGG | + | tig0020460:59389-59408 | None:intergenic | 30.0% | |
| AAGACTAAACTTAAAAGTGG+AGG | - | tig0020460:59569-59588 | Msa1381910:intron | 30.0% | |
| AAATTTCATCGATCAATAGC+TGG | - | tig0020460:59594-59613 | Msa1381910:intron | 30.0% | |
| !! | ATTTTCTGATGTCTTGTTCT+TGG | - | tig0020460:59930-59949 | Msa1381910:intron | 30.0% |
| AGCAACTGGAAAAAATATTG+AGG | - | tig0020460:59957-59976 | Msa1381910:intron | 30.0% | |
| AACTGGAAAAAATATTGAGG+AGG | - | tig0020460:59960-59979 | Msa1381910:intron | 30.0% | |
| !! | GTGCAATATATTTGTTGTGA+AGG | - | tig0020460:59990-60009 | Msa1381910:intron | 30.0% |
| GCTTCGGATATAGTAAAATA+TGG | + | tig0020460:60084-60103 | None:intergenic | 30.0% | |
| ACTATATCCGAAGCAAAAAT+TGG | - | tig0020460:60090-60109 | Msa1381910:intron | 30.0% | |
| ! | CATTAGACCAATTTTTGCTT+CGG | + | tig0020460:60100-60119 | None:intergenic | 30.0% |
| ! | GGAAAATGATATTTTCACTC+CGG | - | tig0020460:60146-60165 | Msa1381910:intron | 30.0% |
| TACCTTATAACCCAAATCAA+TGG | + | tig0020460:60226-60245 | None:intergenic | 30.0% | |
| AATAATGACAAACATTGGGA+GGG | + | tig0020460:60258-60277 | None:intergenic | 30.0% | |
| AAATAATGACAAACATTGGG+AGG | + | tig0020460:60259-60278 | None:intergenic | 30.0% | |
| TGTTGCATCTGTAACATATA+AGG | - | tig0020460:60444-60463 | Msa1381910:CDS | 30.0% | |
| CTGTAACATATAAGGAAACA+AGG | - | tig0020460:60452-60471 | Msa1381910:CDS | 30.0% | |
| AAGCTGCTACTAAGTTTGAA+TGG | + | tig0020460:57772-57791 | None:intergenic | 35.0% | |
| ATGACATGCATGTAATCTGT+TGG | + | tig0020460:58210-58229 | None:intergenic | 35.0% | |
| CATGTCATGAAATGCACAAA+AGG | - | tig0020460:58222-58241 | Msa1381910:intron | 35.0% | |
| AATGTTTCCATAGCGAATGA+GGG | + | tig0020460:58268-58287 | None:intergenic | 35.0% | |
| TGGTATCATAAACTATGGAC+AGG | - | tig0020460:58305-58324 | Msa1381910:CDS | 35.0% | |
| ATTACAGTCACAATTACGGT+TGG | - | tig0020460:58487-58506 | Msa1381910:CDS | 35.0% | |
| AAAGCATATAGAACCGAAGA+TGG | - | tig0020460:58850-58869 | Msa1381910:intron | 35.0% | |
| AAGCATATAGAACCGAAGAT+GGG | - | tig0020460:58851-58870 | Msa1381910:intron | 35.0% | |
| AGTTCTTGCCAATAAACGTT+GGG | - | tig0020460:58987-59006 | Msa1381910:intron | 35.0% | |
| TTTCCTCTTATCTCTCTTTG+TGG | - | tig0020460:59016-59035 | Msa1381910:intron | 35.0% | |
| CATTGCGATATTTCATATCG+TGG | - | tig0020460:59095-59114 | Msa1381910:CDS | 35.0% | |
| ATCGCCAAAAACTTATGTTG+TGG | - | tig0020460:59172-59191 | Msa1381910:intron | 35.0% | |
| CGGAAGACTAAACTTAAAAG+TGG | - | tig0020460:59566-59585 | Msa1381910:intron | 35.0% | |
| TCATATACATCACCGTTTGA+TGG | - | tig0020460:59692-59711 | Msa1381910:intron | 35.0% | |
| GAGGAAAAAACACCATCAAA+CGG | + | tig0020460:59707-59726 | None:intergenic | 35.0% | |
| ! | TTGTGACTTGTGAAAAGTTG+TGG | - | tig0020460:59755-59774 | Msa1381910:CDS | 35.0% |
| ! | TGTGACTTGTGAAAAGTTGT+GGG | - | tig0020460:59756-59775 | Msa1381910:CDS | 35.0% |
| TTGAGAAGAAATCACATCGA+AGG | - | tig0020460:59781-59800 | Msa1381910:CDS | 35.0% | |
| CAAGACATCAGAAAATCCAT+TGG | + | tig0020460:59926-59945 | None:intergenic | 35.0% | |
| AGAATAGATCCATCTATTGC+CGG | + | tig0020460:60168-60187 | None:intergenic | 35.0% | |
| !! | ATAGACATCGCCATTGATTT+GGG | - | tig0020460:60213-60232 | Msa1381910:intron | 35.0% |
| CATAATTTCCTCCACTGATA+TGG | + | tig0020460:60377-60396 | None:intergenic | 35.0% | |
| ATATGTTACAGATGCAACAG+AGG | + | tig0020460:60443-60462 | None:intergenic | 35.0% | |
| TGCAGAGCTGAATATAAAAC+AGG | - | tig0020460:60614-60633 | Msa1381910:intron | 35.0% | |
| TGAAAAACTACGAGGAATAC+TGG | - | tig0020460:60652-60671 | Msa1381910:intron | 35.0% | |
| ATACTGGATGGAATACAAAC+AGG | - | tig0020460:60668-60687 | Msa1381910:intron | 35.0% | |
| TACTGGATGGAATACAAACA+GGG | - | tig0020460:60669-60688 | Msa1381910:intron | 35.0% | |
| GTATTGAGGACAAAAAGTCA+TGG | - | tig0020460:60693-60712 | Msa1381910:intron | 35.0% | |
| GTCCAAGTAGATTGAGAAAT+TGG | - | tig0020460:60719-60738 | Msa1381910:intron | 35.0% | |
| TGCCAATTTCTCAATCTACT+TGG | + | tig0020460:60724-60743 | None:intergenic | 35.0% | |
| GATTTCTGTTGCAAACATAC+AGG | - | tig0020460:60807-60826 | Msa1381910:intron | 35.0% | |
| CAATAAAACTCTGAACATGC+CGG | - | tig0020460:60858-60877 | Msa1381910:intron | 35.0% | |
| GTTTGAATGGAGGTTGTTGT+AGG | + | tig0020460:57759-57778 | None:intergenic | 40.0% | |
| CTGCTACTAAGTTTGAATGG+AGG | + | tig0020460:57769-57788 | None:intergenic | 40.0% | |
| GCAGCTTTCACACAATAACA+AGG | - | tig0020460:57785-57804 | Msa1381910:three_prime_UTR | 40.0% | |
| ! | TTTACGAAATCATGGTGACG+TGG | - | tig0020460:57884-57903 | Msa1381910:three_prime_UTR | 40.0% |
| TATGCTGACATCAATTGGGA+AGG | - | tig0020460:58165-58184 | Msa1381910:intron | 40.0% | |
| CAATGTTTCCATAGCGAATG+AGG | + | tig0020460:58269-58288 | None:intergenic | 40.0% | |
| TGGAAACATTGAGATAAGCC+CGG | - | tig0020460:58278-58297 | Msa1381910:CDS | 40.0% | |
| TAGTTTATGATACCAGCAGC+CGG | + | tig0020460:58300-58319 | None:intergenic | 40.0% | |
| GCTGCTGGTATCATAAACTA+TGG | - | tig0020460:58300-58319 | Msa1381910:CDS | 40.0% | |
| GTTGAAATACCCTTGTACGA+TGG | - | tig0020460:58351-58370 | Msa1381910:intron | 40.0% | |
| AATGCTCTACGCATGAAGAT+GGG | - | tig0020460:58901-58920 | Msa1381910:intron | 40.0% | |
| TCAACAAACTGCTCAACTGA+TGG | + | tig0020460:58952-58971 | None:intergenic | 40.0% | |
| CAGTTCTTGCCAATAAACGT+TGG | - | tig0020460:58986-59005 | Msa1381910:intron | 40.0% | |
| AGACCACAAAGAGAGATAAG+AGG | + | tig0020460:59022-59041 | None:intergenic | 40.0% | |
| AGTCTAATCAGCTTCATGCA+TGG | - | tig0020460:59046-59065 | Msa1381910:intron | 40.0% | |
| !! | TCATGCATGGTTTTACGTTG+CGG | - | tig0020460:59059-59078 | Msa1381910:CDS | 40.0% |
| GACAGATGCAGCTTCAATTT+CGG | - | tig0020460:59127-59146 | Msa1381910:CDS | 40.0% | |
| !!! | AGTTTTTGGCGATCTCCAAA+AGG | + | tig0020460:59165-59184 | None:intergenic | 40.0% |
| ! | AGGGCCACAACATAAGTTTT+TGG | + | tig0020460:59179-59198 | None:intergenic | 40.0% |
| TTATCTTAGGCCTTTGCTGA+TGG | - | tig0020460:59331-59350 | Msa1381910:CDS | 40.0% | |
| TATCTTAGGCCTTTGCTGAT+GGG | - | tig0020460:59332-59351 | Msa1381910:CDS | 40.0% | |
| AGAAATGTGTACTCAGGTGA+TGG | + | tig0020460:59383-59402 | None:intergenic | 40.0% | |
| ! | GAGTGTTACTAATTATGCCC+CGG | - | tig0020460:59641-59660 | Msa1381910:intron | 40.0% |
| ATCACTATTGCCATGCATAC+CGG | + | tig0020460:59663-59682 | None:intergenic | 40.0% | |
| ! | CTTTTCACAAGTCACAACCA+AGG | + | tig0020460:59752-59771 | None:intergenic | 40.0% |
| GTAACTGAAGCAAAAGCCAA+TGG | - | tig0020460:59907-59926 | Msa1381910:intron | 40.0% | |
| TTGTTCTTGGATTCAGCAAC+TGG | - | tig0020460:59943-59962 | Msa1381910:intron | 40.0% | |
| ! | ATTTTCACTCCGGCAATAGA+TGG | - | tig0020460:60156-60175 | Msa1381910:intron | 40.0% |
| ATAGATGGATCTATTCTGCC+TGG | - | tig0020460:60171-60190 | Msa1381910:intron | 40.0% | |
| TAGATGGATCTATTCTGCCT+GGG | - | tig0020460:60172-60191 | Msa1381910:intron | 40.0% | |
| ATCAATGGCGATGTCTATGA+TGG | + | tig0020460:60211-60230 | None:intergenic | 40.0% | |
| ! | CATAGACATCGCCATTGATT+TGG | - | tig0020460:60212-60231 | Msa1381910:intron | 40.0% |
| !! | CGCCATTGATTTGGGTTATA+AGG | - | tig0020460:60221-60240 | Msa1381910:intron | 40.0% |
| CATAGAACGTTCCATATCAG+TGG | - | tig0020460:60363-60382 | Msa1381910:intron | 40.0% | |
| ACGTTGTCTGAAAAACTACG+AGG | - | tig0020460:60644-60663 | Msa1381910:intron | 40.0% | |
| AAACTACGAGGAATACTGGA+TGG | - | tig0020460:60656-60675 | Msa1381910:intron | 40.0% | |
| AATACAAACAGGGCGTATTG+AGG | - | tig0020460:60679-60698 | Msa1381910:intron | 40.0% | |
| TGTTGCAAACATACAGGTAG+AGG | - | tig0020460:60813-60832 | Msa1381910:intron | 40.0% | |
| AGTTTATGATACCAGCAGCC+GGG | + | tig0020460:58299-58318 | None:intergenic | 45.0% | |
| GGTTGCGGTTATTGTTACAC+TGG | - | tig0020460:58385-58404 | Msa1381910:intron | 45.0% | |
| GACTGATGCAGTCAAAACTG+CGG | - | tig0020460:58428-58447 | Msa1381910:intron | 45.0% | |
| CAAGTTCTCAGTTGTTGCAG+TGG | + | tig0020460:58612-58631 | None:intergenic | 45.0% | |
| AGTAAACTTGGGGGATACCA+TGG | - | tig0020460:58662-58681 | Msa1381910:intron | 45.0% | |
| TAGATCCGCCACTGGATATA+GGG | - | tig0020460:58703-58722 | Msa1381910:intron | 45.0% | |
| CAAACACACCCTATATCCAG+TGG | + | tig0020460:58714-58733 | None:intergenic | 45.0% | |
| AAGAAGGATTCGCCCATCTT+CGG | + | tig0020460:58866-58885 | None:intergenic | 45.0% | |
| ! | AATCCTTCTTTTCCGACCAG+AGG | - | tig0020460:58876-58895 | Msa1381910:intron | 45.0% |
| GAATGCTCTACGCATGAAGA+TGG | - | tig0020460:58900-58919 | Msa1381910:intron | 45.0% | |
| ATGCTCTACGCATGAAGATG+GGG | - | tig0020460:58902-58921 | Msa1381910:intron | 45.0% | |
| ! | AACTGCTCAACTGATGGTGA+TGG | + | tig0020460:58946-58965 | None:intergenic | 45.0% |
| ! | CGGTTGCGATTTTCACCTTT+TGG | - | tig0020460:59147-59166 | Msa1381910:intron | 45.0% |
| TTATGTTGTGGCCCTAACAG+TGG | - | tig0020460:59184-59203 | Msa1381910:intron | 45.0% | |
| GGAAAGGGACGCTTTATCTT+AGG | - | tig0020460:59318-59337 | Msa1381910:CDS | 45.0% | |
| CTCATTTATTGCTCCCCTGT+TGG | - | tig0020460:59401-59420 | Msa1381910:intron | 45.0% | |
| TAATTATGCCCCGGTATGCA+TGG | - | tig0020460:59650-59669 | Msa1381910:intron | 45.0% | |
| TCACTATTGCCATGCATACC+GGG | + | tig0020460:59662-59681 | None:intergenic | 45.0% | |
| AGATGGATCTATTCTGCCTG+GGG | - | tig0020460:60173-60192 | Msa1381910:intron | 45.0% | |
| AGAACGTTCCATATCAGTGG+AGG | - | tig0020460:60366-60385 | Msa1381910:intron | 45.0% | |
| GTGTGTGAATCTGCTTTGTG+TGG | - | tig0020460:60939-60958 | Msa1381910:five_prime_UTR | 45.0% | |
| !!! | TTTTTTAAAATTAAAAAAGA+AGG | + | tig0020460:59528-59547 | None:intergenic | 5.0% |
| !! | AAAAAAAATAAAAATTTAAC+AGG | - | tig0020460:59542-59561 | Msa1381910:intron | 5.0% |
| !! | AAAAAAATAAAAATTTAACA+GGG | - | tig0020460:59543-59562 | Msa1381910:intron | 5.0% |
| !! | AAAATATATAATATTCAATT+TGG | + | tig0020460:59729-59748 | None:intergenic | 5.0% |
| CAAGGATCCCTCATTCGCTA+TGG | - | tig0020460:58258-58277 | Msa1381910:CDS | 50.0% | |
| !! | ATCCAGTGGCGGATCTACTT+GGG | + | tig0020460:58700-58719 | None:intergenic | 50.0% |
| !! | TATCCAGTGGCGGATCTACT+TGG | + | tig0020460:58701-58720 | None:intergenic | 50.0% |
| GTAGATCCGCCACTGGATAT+AGG | - | tig0020460:58702-58721 | Msa1381910:intron | 50.0% | |
| ACACACCCTATATCCAGTGG+CGG | + | tig0020460:58711-58730 | None:intergenic | 50.0% | |
| TCTCCTCTGGTCGGAAAAGA+AGG | + | tig0020460:58882-58901 | None:intergenic | 50.0% | |
| ! | GTAGAGCATTCTCCTCTGGT+CGG | + | tig0020460:58891-58910 | None:intergenic | 50.0% |
| ! | ATGCGTAGAGCATTCTCCTC+TGG | + | tig0020460:58895-58914 | None:intergenic | 50.0% |
| TGCTCTACGCATGAAGATGG+GGG | - | tig0020460:58903-58922 | Msa1381910:intron | 50.0% | |
| GCGGTTCAGAACCACTGTTA+GGG | + | tig0020460:59198-59217 | None:intergenic | 50.0% | |
| TGCGGTTCAGAACCACTGTT+AGG | + | tig0020460:59199-59218 | None:intergenic | 50.0% | |
| TTGAAACAGGTACCTCCTCC+AGG | - | tig0020460:59296-59315 | Msa1381910:CDS | 50.0% | |
| TGAAACAGGTACCTCCTCCA+GGG | - | tig0020460:59297-59316 | Msa1381910:CDS | 50.0% | |
| ! | AGATAAAGCGTCCCTTTCCC+TGG | + | tig0020460:59317-59336 | None:intergenic | 50.0% |
| ATGGGAACAGGAGCTGCATT+AGG | - | tig0020460:59350-59369 | Msa1381910:CDS | 50.0% | |
| CTCGTGGTACTTTCCAACAG+GGG | + | tig0020460:59417-59436 | None:intergenic | 50.0% | |
| CCTCGTGGTACTTTCCAACA+GGG | + | tig0020460:59418-59437 | None:intergenic | 50.0% | |
| ACCTCGTGGTACTTTCCAAC+AGG | + | tig0020460:59419-59438 | None:intergenic | 50.0% | |
| CATCGATCAATAGCTGGCAG+TGG | - | tig0020460:59600-59619 | Msa1381910:intron | 50.0% | |
| CACTATTGCCATGCATACCG+GGG | + | tig0020460:59661-59680 | None:intergenic | 50.0% | |
| ! | ATGGATTTTCGTGTGACCCC+AGG | + | tig0020460:60192-60211 | None:intergenic | 50.0% |
| ! | GCTGATGAAGTGTTCTGCAC+AGG | - | tig0020460:60400-60419 | Msa1381910:CDS | 50.0% |
| ATTGAGATAAGCCCGGCTGC+TGG | - | tig0020460:58285-58304 | Msa1381910:CDS | 55.0% | |
| GGATCTACTTGGGGACCCAT+GGG | + | tig0020460:58690-58709 | None:intergenic | 55.0% | |
| !! | TCCAGTGGCGGATCTACTTG+GGG | + | tig0020460:58699-58718 | None:intergenic | 55.0% |
| GCATGAAGATGGGGGCTGAT+AGG | - | tig0020460:58911-58930 | Msa1381910:intron | 55.0% | |
| AGGTACCTCCTCCAGGGAAA+GGG | - | tig0020460:59303-59322 | Msa1381910:CDS | 55.0% | |
| ! | TAAAGCGTCCCTTTCCCTGG+AGG | + | tig0020460:59314-59333 | None:intergenic | 55.0% |
| AGGCCTTTGCTGATGGGAAC+AGG | - | tig0020460:59338-59357 | Msa1381910:CDS | 55.0% | |
| GCTCCTGTTCCCATCAGCAA+AGG | + | tig0020460:59344-59363 | None:intergenic | 55.0% | |
| AACAGGAGCTGCATTAGGCC+CGG | - | tig0020460:59355-59374 | Msa1381910:CDS | 55.0% | |
| !! | TGTACTCAGGTGATGGAGCC+GGG | + | tig0020460:59376-59395 | None:intergenic | 55.0% |
| !! | GTGTACTCAGGTGATGGAGC+CGG | + | tig0020460:59377-59396 | None:intergenic | 55.0% |
| !! | CCCTGTTGGAAAGTACCACG+AGG | - | tig0020460:59415-59434 | Msa1381910:intron | 55.0% |
| AAGTACCACGAGGTCAGCCA+TGG | - | tig0020460:59425-59444 | Msa1381910:intron | 55.0% | |
| CAAATCCATGGCTGACCTCG+TGG | + | tig0020460:59433-59452 | None:intergenic | 55.0% | |
| CGATCAATAGCTGGCAGTGG+TGG | - | tig0020460:59603-59622 | Msa1381910:intron | 55.0% | |
| ! | ATAGCTGGCAGTGGTGGAAC+AGG | - | tig0020460:59609-59628 | Msa1381910:intron | 55.0% |
| GTTCTGCACAGGAACTGCAG+TGG | - | tig0020460:60411-60430 | Msa1381910:CDS | 55.0% | |
| GGGGATACCATGGCTCCCAT+GGG | - | tig0020460:58672-58691 | Msa1381910:intron | 60.0% | |
| CGGATCTACTTGGGGACCCA+TGG | + | tig0020460:58691-58710 | None:intergenic | 60.0% | |
| TCCCCAAGTAGATCCGCCAC+TGG | - | tig0020460:58695-58714 | Msa1381910:intron | 60.0% | |
| CAGGTACCTCCTCCAGGGAA+AGG | - | tig0020460:59302-59321 | Msa1381910:CDS | 60.0% | |
| GGGGGATACCATGGCTCCCA+TGG | - | tig0020460:58671-58690 | Msa1381910:intron | 65.0% | |
| TTGGGGACCCATGGGAGCCA+TGG | + | tig0020460:58682-58701 | None:intergenic | 65.0% | |
| AGCGTCCCTTTCCCTGGAGG+AGG | + | tig0020460:59311-59330 | None:intergenic | 65.0% | |
| ! | GCTGGCAGTGGTGGAACAGG+AGG | - | tig0020460:59612-59631 | Msa1381910:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020460 | gene | 57715 | 61004 | 57715 | ID=Msa1381910;Name=Msa1381910 |
| tig0020460 | mRNA | 57715 | 61004 | 57715 | ID=Msa1381910-mRNA-1;Parent=Msa1381910;Name=Msa1381910-mRNA-1;_AED=0.08;_eAED=0.08;_QI=96|1|1|1|0.87|0.77|9|271|340 |
| tig0020460 | exon | 57715 | 58100 | 57715 | ID=Msa1381910-mRNA-1:exon:7847;Parent=Msa1381910-mRNA-1 |
| tig0020460 | exon | 58246 | 58358 | 58246 | ID=Msa1381910-mRNA-1:exon:7846;Parent=Msa1381910-mRNA-1 |
| tig0020460 | exon | 58477 | 58572 | 58477 | ID=Msa1381910-mRNA-1:exon:7845;Parent=Msa1381910-mRNA-1 |
| tig0020460 | exon | 58708 | 58824 | 58708 | ID=Msa1381910-mRNA-1:exon:7844;Parent=Msa1381910-mRNA-1 |
| tig0020460 | exon | 59057 | 59155 | 59057 | ID=Msa1381910-mRNA-1:exon:7843;Parent=Msa1381910-mRNA-1 |
| tig0020460 | exon | 59283 | 59414 | 59283 | ID=Msa1381910-mRNA-1:exon:7842;Parent=Msa1381910-mRNA-1 |
| tig0020460 | exon | 59711 | 59887 | 59711 | ID=Msa1381910-mRNA-1:exon:7841;Parent=Msa1381910-mRNA-1 |
| tig0020460 | exon | 60393 | 60570 | 60393 | ID=Msa1381910-mRNA-1:exon:7840;Parent=Msa1381910-mRNA-1 |
| tig0020460 | exon | 60913 | 61004 | 60913 | ID=Msa1381910-mRNA-1:exon:7839;Parent=Msa1381910-mRNA-1 |
| tig0020460 | five_prime_UTR | 60913 | 61004 | 60913 | ID=Msa1381910-mRNA-1:five_prime_utr;Parent=Msa1381910-mRNA-1 |
| tig0020460 | five_prime_UTR | 60567 | 60570 | 60567 | ID=Msa1381910-mRNA-1:five_prime_utr;Parent=Msa1381910-mRNA-1 |
| tig0020460 | CDS | 60393 | 60566 | 60393 | ID=Msa1381910-mRNA-1:cds;Parent=Msa1381910-mRNA-1 |
| tig0020460 | CDS | 59711 | 59887 | 59711 | ID=Msa1381910-mRNA-1:cds;Parent=Msa1381910-mRNA-1 |
| tig0020460 | CDS | 59283 | 59414 | 59283 | ID=Msa1381910-mRNA-1:cds;Parent=Msa1381910-mRNA-1 |
| tig0020460 | CDS | 59057 | 59155 | 59057 | ID=Msa1381910-mRNA-1:cds;Parent=Msa1381910-mRNA-1 |
| tig0020460 | CDS | 58708 | 58824 | 58708 | ID=Msa1381910-mRNA-1:cds;Parent=Msa1381910-mRNA-1 |
| tig0020460 | CDS | 58477 | 58572 | 58477 | ID=Msa1381910-mRNA-1:cds;Parent=Msa1381910-mRNA-1 |
| tig0020460 | CDS | 58246 | 58358 | 58246 | ID=Msa1381910-mRNA-1:cds;Parent=Msa1381910-mRNA-1 |
| tig0020460 | CDS | 57986 | 58100 | 57986 | ID=Msa1381910-mRNA-1:cds;Parent=Msa1381910-mRNA-1 |
| tig0020460 | three_prime_UTR | 57715 | 57985 | 57715 | ID=Msa1381910-mRNA-1:three_prime_utr;Parent=Msa1381910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
