AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1386260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386260 MtrunA17_Chr4g0034691 69.220 731 160 8 1 681 1 716 0.0 972
Msa1386260 MtrunA17_Chr4g0034721 71.572 598 106 10 103 681 32 584 0.0 805
Msa1386260 MtrunA17_Chr4g0034721 76.301 346 35 5 3 332 4 318 1.78e-170 500
Msa1386260 MtrunA17_Chr4g0034721 54.237 118 18 2 54 139 211 324 4.35e-25 110
Msa1386260 MtrunA17_Chr4g0034731 66.121 428 108 6 269 674 21 433 0.0 558
Msa1386260 MtrunA17_Chr4g0034731 49.356 233 54 6 1 217 1 185 1.05e-44 166
Msa1386260 MtrunA17_Chr4g0034731 58.784 148 38 3 196 332 42 177 1.06e-38 148
Msa1386260 MtrunA17_Chr4g0034731 50.262 191 37 8 133 311 41 185 1.42e-36 142
Msa1386260 MtrunA17_Chr4g0034451 64.784 301 85 4 383 679 249 532 3.02e-137 413
Msa1386260 MtrunA17_Chr3g0144391 37.925 530 267 17 169 676 19 508 8.20e-95 302
Msa1386260 MtrunA17_Chr6g0485051 69.756 205 61 1 470 673 1 205 7.26e-94 289
Msa1386260 MtrunA17_Chr3g0144411 36.852 540 267 18 181 676 32 541 7.28e-93 298
Msa1386260 MtrunA17_Chr4g0034821 45.662 219 114 4 458 673 75 291 1.33e-60 205
Msa1386260 MtrunA17_Chr3g0138231 45.575 226 118 4 458 680 50 273 1.90e-60 204
Msa1386260 MtrunA17_Chr3g0144451 45.133 226 119 4 458 680 59 282 2.26e-58 198
Msa1386260 MtrunA17_Chr3g0144421 41.818 220 122 4 458 674 87 303 4.73e-53 185
Msa1386260 MtrunA17_Chr4g0034051 72.414 87 24 0 595 681 1 87 4.11e-43 150
Msa1386260 MtrunA17_Chr3g0139431 38.258 264 142 9 423 673 66 321 4.28e-41 152
Msa1386260 MtrunA17_Chr1g0147271 37.443 219 127 6 458 672 171 383 2.88e-39 149
Msa1386260 MtrunA17_Chr1g0147291 34.259 216 135 5 458 672 56 265 1.71e-36 138
Msa1386260 MtrunA17_Chr1g0147261 34.722 216 132 5 458 671 89 297 3.84e-36 138
Msa1386260 MtrunA17_Chr1g0146631 34.862 218 132 6 458 672 113 323 4.11e-36 138
Msa1386260 MtrunA17_Chr1g0147321 33.488 215 136 5 458 671 27 235 1.08e-35 135
Msa1386260 MtrunA17_Chr1g0147251 34.112 214 133 5 458 671 35 240 1.12e-35 135
Msa1386260 MtrunA17_Chr1g0147331 34.862 218 132 6 458 672 113 323 1.91e-35 136
Msa1386260 MtrunA17_Chr1g0147301 32.727 220 137 6 458 672 70 283 1.08e-34 133
Msa1386260 MtrunA17_Chr1g0147311 33.182 220 136 6 458 672 141 354 3.93e-33 130
Msa1386260 MtrunA17_Chr1g0147241 35.263 190 116 4 482 671 128 310 1.20e-31 125
Msa1386260 MtrunA17_Chr4g0034711 65.882 85 29 0 437 521 13 97 2.64e-30 115
Msa1386260 MtrunA17_Chr8g0365401 33.505 194 117 5 482 671 438 623 1.19e-26 115
Msa1386260 MtrunA17_Chr8g0365381 24.774 553 311 20 204 671 108 640 6.11e-26 113
Msa1386260 MtrunA17_Chr5g0413591 31.959 194 120 6 482 671 441 626 2.29e-25 111
Msa1386260 MtrunA17_Chr3g0117791 30.909 220 138 6 458 671 413 624 1.37e-24 108
Msa1386260 MtrunA17_Chr8g0365361 31.414 191 125 5 482 671 207 392 2.23e-23 103
Msa1386260 MtrunA17_Chr4g0076231 33.544 158 100 4 515 671 3 156 1.91e-22 94.4
Msa1386260 MtrunA17_Chr4g0034021 35.814 215 102 8 310 496 50 256 2.20e-22 97.1
Msa1386260 MtrunA17_Chr4g0034031 58.929 56 23 0 517 572 1 56 2.73e-17 76.3
Msa1386260 MtrunA17_Chr5g0412991 28.723 188 121 4 492 671 226 408 2.39e-16 82.0
Msa1386260 MtrunA17_Chr5g0412991 28.571 168 108 3 492 651 18 181 2.43e-14 75.9
Msa1386260 MtrunA17_Chr5g0412981 28.723 188 121 4 492 671 226 408 2.55e-16 81.6
Msa1386260 MtrunA17_Chr5g0412981 28.571 168 108 3 492 651 18 181 3.15e-14 75.5
Msa1386260 MtrunA17_Chr8g0355311 34.000 150 87 7 524 673 53 190 5.13e-16 77.4
Msa1386260 MtrunA17_Chr5g0412951 27.660 188 123 4 492 671 25 207 8.01e-16 77.0
Msa1386260 MtrunA17_Chr8g0355861 33.333 150 88 7 524 673 123 260 2.42e-14 73.9
Msa1386260 MtrunA17_Chr2g0318931 36.054 147 78 7 530 673 137 270 3.85e-14 73.6
Msa1386260 MtrunA17_Chr1g0168781 34.000 150 88 6 524 673 121 259 2.32e-13 70.9
Msa1386260 MtrunA17_Chr8g0355871 31.788 151 91 6 524 674 85 223 1.97e-11 64.7
Msa1386260 MtrunA17_Chr8g0371951 41.176 68 38 2 585 651 11 77 4.02e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386260 AT1G49320.1 35.135 222 136 3 458 672 58 278 1.12e-44 161
Msa1386260 AT5G25610.1 34.703 219 133 6 458 671 176 389 9.51e-36 139
Msa1386260 AT1G60390.1 29.897 194 124 6 482 671 435 620 1.69e-23 105
Msa1386260 AT1G70370.2 31.282 195 122 7 482 672 437 623 1.05e-22 103
Msa1386260 AT1G70370.1 31.282 195 122 7 482 672 437 623 1.05e-22 103
Msa1386260 AT1G23760.1 28.351 194 129 6 482 672 433 619 4.69e-20 95.1

Find 219 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCTCTGGCATTGATTTCT+TGG 0.220690 tig0020796:-5638 None:intergenic
TTTACAAAAGTACACCATTT+TGG 0.230311 tig0020796:+7291 Msa1386260:CDS
CCCATTGGATTCTGATTGTT+TGG 0.238831 tig0020796:-6426 None:intergenic
CCCATTGGATTCTGATTGTT+TGG 0.238831 tig0020796:-6621 None:intergenic
TTGTACCCGGTAGTGTAATC+TGG 0.274373 tig0020796:-6347 None:intergenic
ATGTACCCGTTAAGGTAATT+TGG 0.281112 tig0020796:-6824 None:intergenic
TATATGCTTGTTGTGTTTGA+TGG 0.282014 tig0020796:-5763 None:intergenic
TCCATTGGATTCTGATTGTT+TGG 0.283923 tig0020796:-6567 None:intergenic
TCCATTGGATTCTTGTTGTT+TGG 0.293372 tig0020796:-6675 None:intergenic
GTGTATGAAGCTGGGTAATT+TGG 0.297089 tig0020796:-5738 None:intergenic
AGCCGTTGGTGAGGGTTTGC+TGG 0.310238 tig0020796:-7263 None:intergenic
ACCCAGATCATATTATATTT+AGG 0.313828 tig0020796:+7500 Msa1386260:CDS
AATTTGGTTGCTTGGCTTCA+TGG 0.313905 tig0020796:-6808 None:intergenic
ATTTAGGCAGCTTGGCATTA+AGG 0.314472 tig0020796:+7516 Msa1386260:CDS
GGTAGTGTAATCTGGGTTCT+TGG 0.317068 tig0020796:-6339 None:intergenic
GGTAGTGTAACCTGGGTTCT+TGG 0.319597 tig0020796:-6480 None:intergenic
TGTAGTGTAATCCGGGTTCT+TGG 0.321752 tig0020796:-5856 None:intergenic
TGTAGTGTAATCCGGGTTCT+TGG 0.321752 tig0020796:-5970 None:intergenic
TGTAGTGTAATCCGGGTTCT+TGG 0.321752 tig0020796:-6084 None:intergenic
TGTAGTGTAATCCGGGTTCT+TGG 0.321752 tig0020796:-6198 None:intergenic
TTAGCTTGAGGAGAATCTTC+AGG 0.325821 tig0020796:-7100 None:intergenic
CCCATTGGAATCCAGTTGTT+TGG 0.334877 tig0020796:-6285 None:intergenic
TGCCTAAATATAATATGATC+TGG 0.343870 tig0020796:-7502 None:intergenic
GGGCCTTACATTACTCAATA+TGG 0.344598 tig0020796:+6305 Msa1386260:CDS
CGTACAATTCATTAGATTCC+TGG 0.344740 tig0020796:-6769 None:intergenic
GTGGTCCAAGTTAGGAGATT+GGG 0.344871 tig0020796:-6906 None:intergenic
GGACCTTACATAACTCAATA+TGG 0.345216 tig0020796:+6587 Msa1386260:CDS
TTGGTTTACTGCCTCCGTAC+TGG 0.347317 tig0020796:-5719 None:intergenic
ATCATGTGATACTTCCAAAA+TGG 0.355384 tig0020796:-7305 None:intergenic
TTCATTGGATTCATGGGAAT+GGG 0.362057 tig0020796:-6117 None:intergenic
GGCAGTGTTGTAAGGTTCAT+TGG 0.362108 tig0020796:-6528 None:intergenic
AGATCGTTTGAGGTGGTAGA+TGG 0.363028 tig0020796:-6875 None:intergenic
GGGCCTTACATAACTCAATA+TGG 0.370659 tig0020796:+6641 Msa1386260:CDS
TGTGAATCGGAAACCATTAC+AGG 0.374526 tig0020796:+7148 Msa1386260:CDS
TTGATGGTGGTGTATGAAGC+TGG 0.379706 tig0020796:-5747 None:intergenic
TTGTACCCTGTAGTGTAATC+CGG 0.384147 tig0020796:-5864 None:intergenic
TGATGCGAATGGAGATAAAA+TGG 0.384644 tig0020796:+7438 Msa1386260:CDS
GAATTTGTTGACATGATCAT+TGG 0.389245 tig0020796:+7211 Msa1386260:CDS
TTGTACCCTGTAGTGTAATC+CGG 0.392483 tig0020796:-5978 None:intergenic
TTGTACCCTGTAGTGTAATC+CGG 0.392483 tig0020796:-6092 None:intergenic
TTGTACCCTGTAGTGTAATC+CGG 0.392483 tig0020796:-6206 None:intergenic
TTTCATTAGATTCATGGGTA+TGG 0.395484 tig0020796:-6004 None:intergenic
TATGTAATGACAAAAGTAAA+TGG 0.399290 tig0020796:-7377 None:intergenic
CAGCAGATATGTACCCGTTA+AGG 0.400401 tig0020796:-6832 None:intergenic
GCCATTTGGACACATCTGAT+TGG 0.403046 tig0020796:+7476 Msa1386260:CDS
AGCAACCAAATTACCTTAAC+GGG 0.404392 tig0020796:+6819 Msa1386260:CDS
GGCAGTGTTGTAAGGTTCAA+TGG 0.404622 tig0020796:-6387 None:intergenic
GGATGACAAGCTACCCATTT+GGG 0.410770 tig0020796:-7337 None:intergenic
TGTAAGGTCCACTGGATTCA+TGG 0.411259 tig0020796:-6238 None:intergenic
TTCATTAGATTCATGGGTAT+GGG 0.412584 tig0020796:-6003 None:intergenic
TGTAAGGTTCAATGGATTCA+TGG 0.414653 tig0020796:-6379 None:intergenic
AGCTGTTGGAATTTGCCATT+TGG 0.418321 tig0020796:+7462 Msa1386260:CDS
CAGCTCTACCTTCAAGTCTC+TGG 0.419943 tig0020796:-5652 None:intergenic
TGACAAAAGTAAATGGCATA+TGG 0.422075 tig0020796:-7370 None:intergenic
AATCAATGCCAGAGACTTGA+AGG 0.422523 tig0020796:+5644 Msa1386260:CDS
CTCTCCAAGTGAATTTATCA+TGG 0.423407 tig0020796:-7125 None:intergenic
GGGGCCTTCTAGATCGTTTG+AGG 0.424265 tig0020796:-6885 None:intergenic
GTTAAGGTAATTTGGTTGCT+TGG 0.424962 tig0020796:-6816 None:intergenic
GTTCATTGGATGCATGGGTA+TGG 0.426590 tig0020796:-6514 None:intergenic
TTGTACCCGGTAGTGTAACC+TGG 0.426646 tig0020796:-6488 None:intergenic
GTCCACTGGATTCATGGGTA+TGG 0.427423 tig0020796:-6232 None:intergenic
GCTTCTGTGTGGTCCAAGTT+AGG 0.430125 tig0020796:-6914 None:intergenic
TTGAGTTATGTAAGGTCCAT+TGG 0.433211 tig0020796:-6582 None:intergenic
AGTCTTTGTCTCCCCTGTAA+TGG 0.434357 tig0020796:-7161 None:intergenic
TACCTGTGAACCATCTTATG+TGG 0.435229 tig0020796:+7569 Msa1386260:CDS
GGACCACACAGAAGCTTTCA+AGG 0.436009 tig0020796:+6922 Msa1386260:CDS
TTACGATATTGAGTTATGTA+AGG 0.441136 tig0020796:-6449 None:intergenic
TTACCATATTGAGTTATGTA+AGG 0.441136 tig0020796:-6644 None:intergenic
GTTCAATGGATTCATGGGTA+TGG 0.445281 tig0020796:-6373 None:intergenic
CATATTATATTTAGGCAGCT+TGG 0.445595 tig0020796:+7508 Msa1386260:CDS
AAGACATGAAGCCAAACAAC+TGG 0.447852 tig0020796:+6274 Msa1386260:CDS
TTACCATATTGAGTTATGTA+AGG 0.449605 tig0020796:-6590 None:intergenic
TGGATGACAAGCTACCCATT+TGG 0.450677 tig0020796:-7338 None:intergenic
AAGCAACCAAATTACCTTAA+CGG 0.454443 tig0020796:+6818 Msa1386260:CDS
TGTGGTCCAAGTTAGGAGAT+TGG 0.455176 tig0020796:-6907 None:intergenic
TTACCATAGGCAGTGTTGTA+AGG 0.456880 tig0020796:-6536 None:intergenic
ATGATATTGATGCTCCCAAA+TGG 0.459757 tig0020796:+7323 Msa1386260:CDS
GAACCTTACAACACTGCCTA+TGG 0.460056 tig0020796:+6533 Msa1386260:CDS
TACAGGGACTAGAGTGTTCA+AGG 0.461314 tig0020796:+7402 Msa1386260:CDS
GGAAGTTGTGTAAGGTCCAT+TGG 0.462228 tig0020796:-6690 None:intergenic
TTGAGTTATGTAAGGCCCAT+TGG 0.465944 tig0020796:-6441 None:intergenic
TTGAGTTATGTAAGGCCCAT+TGG 0.465944 tig0020796:-6636 None:intergenic
TTACCATATTGAGTAATGTA+AGG 0.470153 tig0020796:-6308 None:intergenic
TTTCATTGGATTCATGGGAA+TGG 0.475062 tig0020796:-6118 None:intergenic
TTAGCATAGGCAGTGTTGTA+AGG 0.475110 tig0020796:-6395 None:intergenic
GAAGGTAGAGCTGCAAGATC+AGG 0.475278 tig0020796:+5662 Msa1386260:CDS
TTACCATAGGAAGTTGTGTA+AGG 0.475470 tig0020796:-6698 None:intergenic
TGGTTTACTGCCTCCGTACT+GGG 0.478278 tig0020796:-5718 None:intergenic
GATCGTTTGAGGTGGTAGAT+GGG 0.479040 tig0020796:-6874 None:intergenic
TAGCTTGAGGAGAATCTTCA+GGG 0.480432 tig0020796:-7099 None:intergenic
CTGTACCCGCCAGTCATGTA+AGG 0.482850 tig0020796:-5810 None:intergenic
CTGTACCCGCCAGTCATGTA+AGG 0.482850 tig0020796:-5924 None:intergenic
CTGTATCCGCCAGTCATGTA+AGG 0.482850 tig0020796:-6038 None:intergenic
CTGTACCCGCCAGTCATGTA+AGG 0.482850 tig0020796:-6152 None:intergenic
GAATTGTACGTATCTGCATA+TGG 0.484602 tig0020796:+6782 Msa1386260:CDS
GCATTGGAACCCACATAAGA+TGG 0.485432 tig0020796:-7579 None:intergenic
GTGTTCAAGGTCTCACTTGT+CGG 0.486727 tig0020796:+7415 Msa1386260:CDS
GGCAGTTATGTAAGGTCCAC+TGG 0.487353 tig0020796:-6246 None:intergenic
CTTCCGTAGGCAGTTATGTA+AGG 0.488428 tig0020796:-6254 None:intergenic
GGACCTTACACAACTTCCTA+TGG 0.490690 tig0020796:+6695 Msa1386260:CDS
ACCACCTCAAACGATCTAGA+AGG 0.500418 tig0020796:+6881 Msa1386260:CDS
CTTTGCTTCTTGTTTACCAT+AGG 0.500812 tig0020796:-6711 None:intergenic
TTGAGTAATGTAAGGCCCAT+TGG 0.501940 tig0020796:-6300 None:intergenic
TTTATCATGGATTTAGCTTG+AGG 0.502246 tig0020796:-7112 None:intergenic
TCCAATCAGATGTGTCCAAA+TGG 0.503560 tig0020796:-7477 None:intergenic
CCACTTGGACGGGAAATTGA+AGG 0.503790 tig0020796:-6991 None:intergenic
CTAAGCGAGCCTTACATGAC+TGG 0.509211 tig0020796:+5801 Msa1386260:CDS
CTAAGCGAGCCTTACATGAC+TGG 0.509211 tig0020796:+5915 Msa1386260:CDS
CTAAGCGAGCCTTACATGAC+TGG 0.509211 tig0020796:+6029 Msa1386260:CDS
CTAAGCGAGCCTTACATGAC+TGG 0.509211 tig0020796:+6143 Msa1386260:CDS
ATCGTTTGAGGTGGTAGATG+GGG 0.509770 tig0020796:-6873 None:intergenic
AAGAACCCGGATTACACTAC+AGG 0.510637 tig0020796:+5858 Msa1386260:CDS
AAGAACCCGGATTACACTAC+AGG 0.510637 tig0020796:+5972 Msa1386260:CDS
AAGAACCCGGATTACACTAC+AGG 0.510637 tig0020796:+6086 Msa1386260:CDS
AAGAACCCGGATTACACTAC+AGG 0.510637 tig0020796:+6200 Msa1386260:CDS
CCTCCGTACTGGGTAATGTA+TGG 0.514085 tig0020796:-5708 None:intergenic
AGGCAGCTTGGCATTAAGGC+CGG 0.516232 tig0020796:+7520 Msa1386260:CDS
ACCTGTGAACCATCTTATGT+GGG 0.517632 tig0020796:+7570 Msa1386260:CDS
GGAGATAAAATGGAAGCTGT+TGG 0.517741 tig0020796:+7448 Msa1386260:CDS
TTCATTGGATGCATGGGTAT+GGG 0.519593 tig0020796:-6513 None:intergenic
TTCACTTGGAGAGTGTGAAT+CGG 0.519976 tig0020796:+7135 Msa1386260:CDS
ATGCTTGTTGTGTTTGATGG+TGG 0.524061 tig0020796:-5760 None:intergenic
GGTGGTGAGAATACTATGTT+TGG 0.524109 tig0020796:-7242 None:intergenic
GCCTAAATATAATATGATCT+GGG 0.525219 tig0020796:-7501 None:intergenic
TGGTCCAAGTTAGGAGATTG+GGG 0.526114 tig0020796:-6905 None:intergenic
GTACAATTCATTAGATTCCT+GGG 0.527136 tig0020796:-6768 None:intergenic
TCCACTGGATTCATGGGTAT+GGG 0.527581 tig0020796:-6231 None:intergenic
CTGGGTATGAGTGTTATATC+CGG 0.528373 tig0020796:-6750 None:intergenic
TTCAATGGATTCATGGGTAT+GGG 0.529636 tig0020796:-6372 None:intergenic
TCGTTTGAGGTGGTAGATGG+GGG 0.531816 tig0020796:-6872 None:intergenic
TGTACCCGGTAGTGTAATCT+GGG 0.532124 tig0020796:-6346 None:intergenic
GTAAGGTTCAATGGATTCAT+GGG 0.532589 tig0020796:-6378 None:intergenic
TTTGGCTTCATGTTTACCAT+AGG 0.532676 tig0020796:-6549 None:intergenic
CTTAACGGGTACATATCTGC+TGG 0.538096 tig0020796:+6833 Msa1386260:CDS
GGCAGCTTGGCATTAAGGCC+GGG 0.541302 tig0020796:+7521 Msa1386260:CDS
ACACACTGGAGAGTTCTTCC+CGG 0.545365 tig0020796:-7539 None:intergenic
TGATATTGATGCTCCCAAAT+GGG 0.545823 tig0020796:+7324 Msa1386260:CDS
TCTGCTGGAAATGACCCAAA+AGG 0.545928 tig0020796:+6848 Msa1386260:CDS
CCAAACAACTGGATTCCAAT+GGG 0.546622 tig0020796:+6285 Msa1386260:CDS
GTAAGGTCCACTGGATTCAT+GGG 0.548211 tig0020796:-6237 None:intergenic
TTTGGCTTCATGTCTTCCGT+AGG 0.548233 tig0020796:-6267 None:intergenic
CCAAACAATCAGAATCCAAT+GGG 0.549989 tig0020796:+6426 Msa1386260:CDS
CCAAACAATCAGAATCCAAT+GGG 0.549989 tig0020796:+6621 Msa1386260:CDS
TGTACCCTGTAGTGTAATCC+GGG 0.551924 tig0020796:-5977 None:intergenic
TGTACCCTGTAGTGTAATCC+GGG 0.551924 tig0020796:-6091 None:intergenic
TGTACCCTGTAGTGTAATCC+GGG 0.551924 tig0020796:-6205 None:intergenic
AAGAACCCAGGTTACACTAC+CGG 0.552435 tig0020796:+6482 Msa1386260:CDS
AAGAACCCAGATTACACTAC+CGG 0.556042 tig0020796:+6341 Msa1386260:CDS
GGCGGGTACAGACTTGCATA+TGG 0.556538 tig0020796:+5822 Msa1386260:CDS
GGCGGGTACAGACTTGCATA+TGG 0.556538 tig0020796:+5936 Msa1386260:CDS
GGCGGGTACAGACTTGCATA+TGG 0.556538 tig0020796:+6164 Msa1386260:CDS
AAAGGAGAAACCACTTGGAC+GGG 0.559421 tig0020796:-7001 None:intergenic
TGTAAGGTTCATTGGATGCA+TGG 0.559989 tig0020796:-6520 None:intergenic
TTGTGACATTGCAAGAGGAA+TGG 0.560283 tig0020796:-7047 None:intergenic
TGTACCCTGTAGTGTAATCC+GGG 0.564768 tig0020796:-5863 None:intergenic
TGATGGTGGTGTATGAAGCT+GGG 0.564799 tig0020796:-5746 None:intergenic
TTTGGCTTCATGTTTAGCAT+AGG 0.568199 tig0020796:-6408 None:intergenic
AAGCAACAAAGTTACAATAC+CGG 0.568840 tig0020796:+6731 Msa1386260:CDS
GCCAAACAACTGGATTCCAA+TGG 0.569111 tig0020796:+6284 Msa1386260:CDS
TCACTTGTCGGTGATGCGAA+TGG 0.570327 tig0020796:+7427 Msa1386260:CDS
AAAGGGACAGCCGTTGGTGA+GGG 0.570768 tig0020796:-7271 None:intergenic
ATGGGTATGGGTCTTGTACC+CGG 0.573227 tig0020796:-6360 None:intergenic
TAAAGGGACAGCCGTTGGTG+AGG 0.573416 tig0020796:-7272 None:intergenic
CACCAGCAAACCCTCACCAA+CGG 0.575279 tig0020796:+7261 Msa1386260:CDS
AAACCATACATTACCCAGTA+CGG 0.577354 tig0020796:+5705 Msa1386260:CDS
ACCCACATAAGATGGTTCAC+AGG 0.577363 tig0020796:-7571 None:intergenic
ATGGGTATGGGTCTTGTACC+CGG 0.577866 tig0020796:-6501 None:intergenic
CGGATATAACACTCATACCC+AGG 0.579747 tig0020796:+6751 Msa1386260:CDS
GCCAAACAATCAGAATCCAA+TGG 0.580573 tig0020796:+6425 Msa1386260:CDS
GCCAAACAATCAGAATCCAA+TGG 0.580573 tig0020796:+6620 Msa1386260:CDS
GAGCATGGACTCTAGAGAGT+TGG 0.580577 tig0020796:-7188 None:intergenic
GTAAGGTTCATTGGATGCAT+GGG 0.583311 tig0020796:-6519 None:intergenic
CCTTCAATTTCCCGTCCAAG+TGG 0.588140 tig0020796:+6991 Msa1386260:CDS
AGAACCCAGGTTACACTACC+GGG 0.588345 tig0020796:+6483 Msa1386260:CDS
TAAACATGAAGCCAAGAACC+CGG 0.590476 tig0020796:+5845 Msa1386260:CDS
TAAACATGAAGCCAAGAACC+CGG 0.590476 tig0020796:+5959 Msa1386260:CDS
TAAACATGAAGCCAAGAACC+CGG 0.590476 tig0020796:+6187 Msa1386260:CDS
GGACCTTACATAACTGCCTA+CGG 0.593355 tig0020796:+6251 Msa1386260:CDS
CACACAGAAGCTTTCAAGGT+AGG 0.597254 tig0020796:+6926 Msa1386260:CDS
GAAAGGAGAAACCACTTGGA+CGG 0.598116 tig0020796:-7002 None:intergenic
TTTGTCATTACATAGCTACA+GGG 0.598347 tig0020796:+7386 Msa1386260:CDS
CACTTGGACGGGAAATTGAA+GGG 0.598885 tig0020796:-6990 None:intergenic
AGAGGAAAGGAGAAACCACT+TGG 0.600974 tig0020796:-7006 None:intergenic
TAAACATGAAGCCAAGAACC+CGG 0.602710 tig0020796:+6073 Msa1386260:CDS
AAATCCATGATAAATTCACT+TGG 0.603290 tig0020796:+7121 Msa1386260:CDS
GGGAGTTGTGACATTGCAAG+AGG 0.609821 tig0020796:-7052 None:intergenic
GCTGCAAGATCAGGATCAAG+TGG 0.609867 tig0020796:+5671 Msa1386260:CDS
GCCAAACAATCAGAATCCAA+TGG 0.613339 tig0020796:+6566 Msa1386260:CDS
ATGGCATATGGATATGAGAG+TGG 0.619183 tig0020796:-7358 None:intergenic
GCCTTCTAGATCGTTTGAGG+TGG 0.619752 tig0020796:-6882 None:intergenic
CGTTGGTGAGGGTTTGCTGG+TGG 0.621109 tig0020796:-7260 None:intergenic
TGTACCCGGTAGTGTAACCT+GGG 0.622075 tig0020796:-6487 None:intergenic
CATGTCAACAAATTCGAGCA+TGG 0.623516 tig0020796:-7203 None:intergenic
GCCAAACAACAAGAATCCAA+TGG 0.625758 tig0020796:+6674 Msa1386260:CDS
GCGAGCCTTACATGACTGGC+GGG 0.626816 tig0020796:+5805 Msa1386260:CDS
GCGAGCCTTACATGACTGGC+GGG 0.626816 tig0020796:+5919 Msa1386260:CDS
GCGAGCCTTACATGACTGGC+GGG 0.626816 tig0020796:+6147 Msa1386260:CDS
CGTTTGAGGTGGTAGATGGG+GGG 0.627717 tig0020796:-6871 None:intergenic
GTGAATCGGAAACCATTACA+GGG 0.628683 tig0020796:+7149 Msa1386260:CDS
GGCGGATACAGACTTGCATA+CGG 0.637048 tig0020796:+6050 Msa1386260:CDS
AGCGAGCCTTACATGACTGG+CGG 0.648735 tig0020796:+5804 Msa1386260:CDS
AGCGAGCCTTACATGACTGG+CGG 0.648735 tig0020796:+5918 Msa1386260:CDS
AGCGAGCCTTACATGACTGG+CGG 0.648735 tig0020796:+6146 Msa1386260:CDS
ACCCATACCCATGAATCCAG+TGG 0.653332 tig0020796:+6230 Msa1386260:CDS
ACAGGTAAGAAGTGACACAC+TGG 0.654861 tig0020796:-7553 None:intergenic
ATAGACGAACTCACTTCACA+TGG 0.657262 tig0020796:-7617 None:intergenic
AGAACCCAGATTACACTACC+GGG 0.659254 tig0020796:+6342 Msa1386260:CDS
AGCGAGCCTTACATGACTGG+CGG 0.688215 tig0020796:+6032 Msa1386260:CDS
AGAACCCGGATTACACTACA+GGG 0.688478 tig0020796:+5859 Msa1386260:CDS
AGAACCCGGATTACACTACA+GGG 0.688478 tig0020796:+5973 Msa1386260:CDS
AGAACCCGGATTACACTACA+GGG 0.688478 tig0020796:+6087 Msa1386260:CDS
AGAACCCGGATTACACTACA+GGG 0.688478 tig0020796:+6201 Msa1386260:CDS
GGTCCAAGTTAGGAGATTGG+GGG 0.690347 tig0020796:-6904 None:intergenic
AAACATGAAACCAAGAACCC+AGG 0.692067 tig0020796:+6470 Msa1386260:CDS
GACGAACTCACTTCACATGG+AGG 0.694583 tig0020796:-7614 None:intergenic
CTACCTTGAAAGCTTCTGTG+TGG 0.713851 tig0020796:-6925 None:intergenic
CCATACATTACCCAGTACGG+AGG 0.735732 tig0020796:+5708 Msa1386260:CDS
TGAATCGGAAACCATTACAG+GGG 0.744089 tig0020796:+7150 Msa1386260:CDS
AGAAGAAAAGAACTACTGTG+AGG 0.750096 tig0020796:-3767 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAAAATAAAAAAAT+GGG - tig0020796:4334-4353 None:intergenic 0.0%
!!! AATGTAAATATTTATTTTCA+AGG - tig0020796:4069-4088 None:intergenic 10.0%
!! TATATTGAAAGAAAAATTAT+AGG - tig0020796:4226-4245 None:intergenic 10.0%
!! AAACTAATTGTATATATATT+TGG - tig0020796:5059-5078 None:intergenic 10.0%
!! TATATTAAACTTAACTAATA+AGG - tig0020796:5214-5233 None:intergenic 10.0%
!!! ATTATTTATTTTTTGGTTAA+AGG + tig0020796:5453-5472 Msa1386260:intron 10.0%
!!! ATATTCTTTTTTTTTTTTGA+AGG + tig0020796:5543-5562 Msa1386260:intron 10.0%
!! ATTGATTAAGTTATTAGATA+CGG + tig0020796:3868-3887 Msa1386260:intron 15.0%
!! TTTATTTACATTTGAATAGA+AGG + tig0020796:4514-4533 Msa1386260:intron 15.0%
!! TGATAAGTAAAACAAAAAAT+GGG - tig0020796:4598-4617 None:intergenic 15.0%
!! ATGATAAGTAAAACAAAAAA+TGG - tig0020796:4599-4618 None:intergenic 15.0%
!! TGTTTAGTACAAATTAATTA+TGG + tig0020796:5078-5097 Msa1386260:intron 15.0%
!!! CTTTTCTAAATAGTTATTTT+CGG + tig0020796:5136-5155 Msa1386260:intron 15.0%
!! CAATAAATGATTATATAGAA+TGG - tig0020796:5303-5322 None:intergenic 15.0%
!! ATATAATAGTAATATCAACT+TGG + tig0020796:5501-5520 Msa1386260:intron 15.0%
!! TTTGTTGAATATTGTGATTA+TGG + tig0020796:4293-4312 Msa1386260:intron 20.0%
!! TGTATATATATTTGGTTATG+CGG - tig0020796:5051-5070 None:intergenic 20.0%
!! TATGTAATGACAAAAGTAAA+TGG - tig0020796:7380-7399 None:intergenic 20.0%
!! AGTAGTTCTTTTCTTCTTTA+TGG + tig0020796:3773-3792 Msa1386260:CDS 25.0%
! CTAAATCTACAAGATATAGA+TGG - tig0020796:4384-4403 None:intergenic 25.0%
! AAGTAAAACAAAAAATGGGA+TGG - tig0020796:4594-4613 None:intergenic 25.0%
! ATAAATTTAGTCGTCATGTT+TGG + tig0020796:4736-4755 Msa1386260:intron 25.0%
!! AGTTAGAAGAAATTTTACGA+GGG - tig0020796:5277-5296 None:intergenic 25.0%
!! TAGCTTTTCATTAGATTCAT+GGG - tig0020796:5898-5917 None:intergenic 25.0%
!!! TTAGCTTTTCATTAGATTCA+TGG - tig0020796:5899-5918 None:intergenic 25.0%
!! TAGCTTTTCATTAGATTCAT+GGG - tig0020796:5898-5917 None:intergenic 25.0%
!!! TTAGCTTTTCATTAGATTCA+TGG - tig0020796:5899-5918 None:intergenic 25.0%
! TTACCATATTGAGTAATGTA+AGG - tig0020796:6311-6330 None:intergenic 25.0%
! TTACGATATTGAGTTATGTA+AGG - tig0020796:6452-6471 None:intergenic 25.0%
! TTACCATATTGAGTTATGTA+AGG - tig0020796:6593-6612 None:intergenic 25.0%
! TTACCATATTGAGTTATGTA+AGG - tig0020796:6593-6612 None:intergenic 25.0%
! AAATCCATGATAAATTCACT+TGG + tig0020796:7121-7140 Msa1386260:CDS 25.0%
!! AAATGGTGTACTTTTGTAAA+GGG - tig0020796:7291-7310 None:intergenic 25.0%
!! AAAATGGTGTACTTTTGTAA+AGG - tig0020796:7292-7311 None:intergenic 25.0%
!!! TTTACAAAAGTACACCATTT+TGG + tig0020796:7291-7310 Msa1386260:CDS 25.0%
! ACCCAGATCATATTATATTT+AGG + tig0020796:7500-7519 Msa1386260:CDS 25.0%
! GCCTAAATATAATATGATCT+GGG - tig0020796:7504-7523 None:intergenic 25.0%
! TGCCTAAATATAATATGATC+TGG - tig0020796:7505-7524 None:intergenic 25.0%
AATTGCACATAGTGATAGTT+GGG + tig0020796:3802-3821 Msa1386260:intron 30.0%
ATTAGATACGGAGAAAAAAG+AGG + tig0020796:3880-3899 Msa1386260:intron 30.0%
TTAGATACGGAGAAAAAAGA+GGG + tig0020796:3881-3900 Msa1386260:intron 30.0%
CCTATAGAAATTGCATTGTT+TGG - tig0020796:4043-4062 None:intergenic 30.0%
CCAAACAATGCAATTTCTAT+AGG + tig0020796:4040-4059 Msa1386260:intron 30.0%
TTGAGTCACACAATTAAATG+TGG - tig0020796:4258-4277 None:intergenic 30.0%
!! TGCATAAAGCTTTGTTAACA+AGG + tig0020796:4783-4802 Msa1386260:intron 30.0%
TCTGATTAAAAGTGACTTGA+AGG - tig0020796:4984-5003 None:intergenic 30.0%
! GAGTTAGAAGAAATTTTACG+AGG - tig0020796:5278-5297 None:intergenic 30.0%
!! TATATGCTTGTTGTGTTTGA+TGG - tig0020796:5766-5785 None:intergenic 30.0%
TTCATTAGATTCATGGGTAT+GGG - tig0020796:5892-5911 None:intergenic 30.0%
TTTCATTAGATTCATGGGTA+TGG - tig0020796:5893-5912 None:intergenic 30.0%
! TAGCTTTTCATTGGATTCAT+GGG - tig0020796:6126-6145 None:intergenic 30.0%
!! TTAGCTTTTCATTGGATTCA+TGG - tig0020796:6127-6146 None:intergenic 30.0%
AAGCAACAAAGTTACAATAC+CGG + tig0020796:6731-6750 Msa1386260:CDS 30.0%
GTACAATTCATTAGATTCCT+GGG - tig0020796:6771-6790 None:intergenic 30.0%
AAGCAACCAAATTACCTTAA+CGG + tig0020796:6818-6837 Msa1386260:CDS 30.0%
!! CAAGGTAGGATTTTTCAATT+TGG + tig0020796:6940-6959 Msa1386260:CDS 30.0%
AGAAGAGTTGAAAAACACTT+GGG - tig0020796:7075-7094 None:intergenic 30.0%
!! TTTATCATGGATTTAGCTTG+AGG - tig0020796:7115-7134 None:intergenic 30.0%
!! GAATTTGTTGACATGATCAT+TGG + tig0020796:7211-7230 Msa1386260:CDS 30.0%
ATCATGTGATACTTCCAAAA+TGG - tig0020796:7308-7327 None:intergenic 30.0%
TGACAAAAGTAAATGGCATA+TGG - tig0020796:7373-7392 None:intergenic 30.0%
! TTTTGTCATTACATAGCTAC+AGG + tig0020796:7385-7404 Msa1386260:CDS 30.0%
TTTGTCATTACATAGCTACA+GGG + tig0020796:7386-7405 Msa1386260:CDS 30.0%
CATATTATATTTAGGCAGCT+TGG + tig0020796:7508-7527 Msa1386260:CDS 30.0%
AGAAGAAAAGAACTACTGTG+AGG - tig0020796:3770-3789 None:intergenic 35.0%
CAATTGCACATAGTGATAGT+TGG + tig0020796:3801-3820 Msa1386260:intron 35.0%
ATTGCACATAGTGATAGTTG+GGG + tig0020796:3803-3822 Msa1386260:intron 35.0%
ATAAAAAAATGGGGTGACCA+AGG - tig0020796:4324-4343 None:intergenic 35.0%
ACATTTGAATAGAAGGCAAG+CGG + tig0020796:4521-4540 Msa1386260:intron 35.0%
AACAAAAAATGGGATGGCTA+AGG - tig0020796:4588-4607 None:intergenic 35.0%
AATCTACAATGACAACATCG+AGG - tig0020796:5616-5635 None:intergenic 35.0%
TCGATGTTGTCATTGTAGAT+TGG + tig0020796:5615-5634 Msa1386260:intron 35.0%
AAACCATACATTACCCAGTA+CGG + tig0020796:5705-5724 Msa1386260:CDS 35.0%
TTCATTGGATTCATGGGAAT+GGG - tig0020796:6120-6139 None:intergenic 35.0%
TTTCATTGGATTCATGGGAA+TGG - tig0020796:6121-6140 None:intergenic 35.0%
! TTCAATGGATTCATGGGTAT+GGG - tig0020796:6375-6394 None:intergenic 35.0%
! GTAAGGTTCAATGGATTCAT+GGG - tig0020796:6381-6400 None:intergenic 35.0%
! TGTAAGGTTCAATGGATTCA+TGG - tig0020796:6382-6401 None:intergenic 35.0%
! TTTGGCTTCATGTTTAGCAT+AGG - tig0020796:6411-6430 None:intergenic 35.0%
CCAAACAATCAGAATCCAAT+GGG + tig0020796:6426-6445 Msa1386260:CDS 35.0%
! TTTGGCTTCATGTTTACCAT+AGG - tig0020796:6552-6571 None:intergenic 35.0%
TCCATTGGATTCTGATTGTT+TGG - tig0020796:6570-6589 None:intergenic 35.0%
TTGAGTTATGTAAGGTCCAT+TGG - tig0020796:6585-6604 None:intergenic 35.0%
GGACCTTACATAACTCAATA+TGG + tig0020796:6587-6606 Msa1386260:CDS 35.0%
CCAAACAATCAGAATCCAAT+GGG + tig0020796:6426-6445 Msa1386260:CDS 35.0%
!! TCCATTGGATTCTTGTTGTT+TGG - tig0020796:6678-6697 None:intergenic 35.0%
TTACCATAGGAAGTTGTGTA+AGG - tig0020796:6701-6720 None:intergenic 35.0%
! CTTTGCTTCTTGTTTACCAT+AGG - tig0020796:6714-6733 None:intergenic 35.0%
CGTACAATTCATTAGATTCC+TGG - tig0020796:6772-6791 None:intergenic 35.0%
GAATTGTACGTATCTGCATA+TGG + tig0020796:6782-6801 Msa1386260:CDS 35.0%
GTTAAGGTAATTTGGTTGCT+TGG - tig0020796:6819-6838 None:intergenic 35.0%
AGCAACCAAATTACCTTAAC+GGG + tig0020796:6819-6838 Msa1386260:CDS 35.0%
ATGTACCCGTTAAGGTAATT+TGG - tig0020796:6827-6846 None:intergenic 35.0%
!!! GACTCTTTTTTAGAGAGGAA+AGG - tig0020796:7022-7041 None:intergenic 35.0%
!!! AGTCAGACTCTTTTTTAGAG+AGG - tig0020796:7027-7046 None:intergenic 35.0%
GAGAAGAGTTGAAAAACACT+TGG - tig0020796:7076-7095 None:intergenic 35.0%
CTCTCCAAGTGAATTTATCA+TGG - tig0020796:7128-7147 None:intergenic 35.0%
ATGATATTGATGCTCCCAAA+TGG + tig0020796:7323-7342 Msa1386260:CDS 35.0%
TGATATTGATGCTCCCAAAT+GGG + tig0020796:7324-7343 Msa1386260:CDS 35.0%
TGATGCGAATGGAGATAAAA+TGG + tig0020796:7438-7457 Msa1386260:CDS 35.0%
TGGTTCATTGCAGGAAAATG+AGG - tig0020796:4023-4042 None:intergenic 40.0%
! TGCATTGTTTGGTTCATTGC+AGG - tig0020796:4032-4051 None:intergenic 40.0%
TTGTGATTATGGTGTAGCCT+TGG + tig0020796:4304-4323 Msa1386260:intron 40.0%
CATTTGAATAGAAGGCAAGC+GGG + tig0020796:4522-4541 Msa1386260:intron 40.0%
ATCAACTTGGCTACTCAACT+TGG + tig0020796:5514-5533 Msa1386260:intron 40.0%
!! AGTCTCTGGCATTGATTTCT+TGG - tig0020796:5641-5660 None:intergenic 40.0%
AATCAATGCCAGAGACTTGA+AGG + tig0020796:5644-5663 Msa1386260:CDS 40.0%
GTGTATGAAGCTGGGTAATT+TGG - tig0020796:5741-5760 None:intergenic 40.0%
!! ATGCTTGTTGTGTTTGATGG+TGG - tig0020796:5763-5782 None:intergenic 40.0%
TAAACATGAAGCCAAGAACC+CGG + tig0020796:5845-5864 Msa1386260:CDS 40.0%
TTGTACCCTGTAGTGTAATC+CGG - tig0020796:5867-5886 None:intergenic 40.0%
TAAACATGAAGCCAAGAACC+CGG + tig0020796:5845-5864 Msa1386260:CDS 40.0%
TTGTACCCTGTAGTGTAATC+CGG - tig0020796:5867-5886 None:intergenic 40.0%
TAAACATGAAGCCAAGAACC+CGG + tig0020796:5845-5864 Msa1386260:CDS 40.0%
TTGTACCCTGTAGTGTAATC+CGG - tig0020796:5867-5886 None:intergenic 40.0%
TAAACATGAAGCCAAGAACC+CGG + tig0020796:5845-5864 Msa1386260:CDS 40.0%
TTGTACCCTGTAGTGTAATC+CGG - tig0020796:5867-5886 None:intergenic 40.0%
AAGACATGAAGCCAAACAAC+TGG + tig0020796:6274-6293 Msa1386260:CDS 40.0%
CCAAACAACTGGATTCCAAT+GGG + tig0020796:6285-6304 Msa1386260:CDS 40.0%
TTGAGTAATGTAAGGCCCAT+TGG - tig0020796:6303-6322 None:intergenic 40.0%
GGGCCTTACATTACTCAATA+TGG + tig0020796:6305-6324 Msa1386260:CDS 40.0%
AAGAACCCAGATTACACTAC+CGG + tig0020796:6341-6360 Msa1386260:CDS 40.0%
! GTTCAATGGATTCATGGGTA+TGG - tig0020796:6376-6395 None:intergenic 40.0%
TTAGCATAGGCAGTGTTGTA+AGG - tig0020796:6398-6417 None:intergenic 40.0%
GCCAAACAATCAGAATCCAA+TGG + tig0020796:6425-6444 Msa1386260:CDS 40.0%
CCCATTGGATTCTGATTGTT+TGG - tig0020796:6429-6448 None:intergenic 40.0%
TTGAGTTATGTAAGGCCCAT+TGG - tig0020796:6444-6463 None:intergenic 40.0%
AAACATGAAACCAAGAACCC+AGG + tig0020796:6329-6348 Msa1386260:CDS 40.0%
TTCATTGGATGCATGGGTAT+GGG - tig0020796:6516-6535 None:intergenic 40.0%
GTAAGGTTCATTGGATGCAT+GGG - tig0020796:6522-6541 None:intergenic 40.0%
TGTAAGGTTCATTGGATGCA+TGG - tig0020796:6523-6542 None:intergenic 40.0%
TTACCATAGGCAGTGTTGTA+AGG - tig0020796:6539-6558 None:intergenic 40.0%
GCCAAACAATCAGAATCCAA+TGG + tig0020796:6425-6444 Msa1386260:CDS 40.0%
GCCAAACAATCAGAATCCAA+TGG + tig0020796:6425-6444 Msa1386260:CDS 40.0%
CCCATTGGATTCTGATTGTT+TGG - tig0020796:6429-6448 None:intergenic 40.0%
TTGAGTTATGTAAGGCCCAT+TGG - tig0020796:6444-6463 None:intergenic 40.0%
GGGCCTTACATAACTCAATA+TGG + tig0020796:6446-6465 Msa1386260:CDS 40.0%
GCCAAACAACAAGAATCCAA+TGG + tig0020796:6674-6693 Msa1386260:CDS 40.0%
CTGGGTATGAGTGTTATATC+CGG - tig0020796:6753-6772 None:intergenic 40.0%
AATTTGGTTGCTTGGCTTCA+TGG - tig0020796:6811-6830 None:intergenic 40.0%
TTGTGACATTGCAAGAGGAA+TGG - tig0020796:7050-7069 None:intergenic 40.0%
TAGCTTGAGGAGAATCTTCA+GGG - tig0020796:7102-7121 None:intergenic 40.0%
! TTAGCTTGAGGAGAATCTTC+AGG - tig0020796:7103-7122 None:intergenic 40.0%
! TTCACTTGGAGAGTGTGAAT+CGG + tig0020796:7135-7154 Msa1386260:CDS 40.0%
TGTGAATCGGAAACCATTAC+AGG + tig0020796:7148-7167 Msa1386260:CDS 40.0%
GTGAATCGGAAACCATTACA+GGG + tig0020796:7149-7168 Msa1386260:CDS 40.0%
TGAATCGGAAACCATTACAG+GGG + tig0020796:7150-7169 Msa1386260:CDS 40.0%
CATGTCAACAAATTCGAGCA+TGG - tig0020796:7206-7225 None:intergenic 40.0%
GGTGGTGAGAATACTATGTT+TGG - tig0020796:7245-7264 None:intergenic 40.0%
ATGGCATATGGATATGAGAG+TGG - tig0020796:7361-7380 None:intergenic 40.0%
GGAGATAAAATGGAAGCTGT+TGG + tig0020796:7448-7467 Msa1386260:CDS 40.0%
AGCTGTTGGAATTTGCCATT+TGG + tig0020796:7462-7481 Msa1386260:CDS 40.0%
TCCAATCAGATGTGTCCAAA+TGG - tig0020796:7480-7499 None:intergenic 40.0%
ATTTAGGCAGCTTGGCATTA+AGG + tig0020796:7516-7535 Msa1386260:CDS 40.0%
TACCTGTGAACCATCTTATG+TGG + tig0020796:7569-7588 Msa1386260:CDS 40.0%
ACCTGTGAACCATCTTATGT+GGG + tig0020796:7570-7589 Msa1386260:CDS 40.0%
CATAGTGATAGTTGGGGTCT+TGG + tig0020796:3809-3828 Msa1386260:intron 45.0%
CAGGAAAATGAGGAGAGTGA+AGG - tig0020796:4013-4032 None:intergenic 45.0%
!! TGATGGTGGTGTATGAAGCT+GGG - tig0020796:5749-5768 None:intergenic 45.0%
!! TTGATGGTGGTGTATGAAGC+TGG - tig0020796:5750-5769 None:intergenic 45.0%
TGTAGTGTAATCCGGGTTCT+TGG - tig0020796:5859-5878 None:intergenic 45.0%
AAGAACCCGGATTACACTAC+AGG + tig0020796:5858-5877 Msa1386260:CDS 45.0%
AGAACCCGGATTACACTACA+GGG + tig0020796:5859-5878 Msa1386260:CDS 45.0%
TGTACCCTGTAGTGTAATCC+GGG - tig0020796:5866-5885 None:intergenic 45.0%
TGTAGTGTAATCCGGGTTCT+TGG - tig0020796:5859-5878 None:intergenic 45.0%
AAGAACCCGGATTACACTAC+AGG + tig0020796:5858-5877 Msa1386260:CDS 45.0%
AGAACCCGGATTACACTACA+GGG + tig0020796:5859-5878 Msa1386260:CDS 45.0%
TGTACCCTGTAGTGTAATCC+GGG - tig0020796:5866-5885 None:intergenic 45.0%
TGTAGTGTAATCCGGGTTCT+TGG - tig0020796:5859-5878 None:intergenic 45.0%
AAGAACCCGGATTACACTAC+AGG + tig0020796:5858-5877 Msa1386260:CDS 45.0%
AGAACCCGGATTACACTACA+GGG + tig0020796:5859-5878 Msa1386260:CDS 45.0%
TGTACCCTGTAGTGTAATCC+GGG - tig0020796:5866-5885 None:intergenic 45.0%
!! AGGCTCGCTTAGCTTTTCAT+TGG - tig0020796:5907-5926 None:intergenic 45.0%
TGTAGTGTAATCCGGGTTCT+TGG - tig0020796:5859-5878 None:intergenic 45.0%
AAGAACCCGGATTACACTAC+AGG + tig0020796:5858-5877 Msa1386260:CDS 45.0%
AGAACCCGGATTACACTACA+GGG + tig0020796:5859-5878 Msa1386260:CDS 45.0%
TGTACCCTGTAGTGTAATCC+GGG - tig0020796:5866-5885 None:intergenic 45.0%
TCCACTGGATTCATGGGTAT+GGG - tig0020796:6234-6253 None:intergenic 45.0%
GTAAGGTCCACTGGATTCAT+GGG - tig0020796:6240-6259 None:intergenic 45.0%
TGTAAGGTCCACTGGATTCA+TGG - tig0020796:6241-6260 None:intergenic 45.0%
GGACCTTACATAACTGCCTA+CGG + tig0020796:6251-6270 Msa1386260:CDS 45.0%
CTTCCGTAGGCAGTTATGTA+AGG - tig0020796:6257-6276 None:intergenic 45.0%
! TTTGGCTTCATGTCTTCCGT+AGG - tig0020796:6270-6289 None:intergenic 45.0%
GCCAAACAACTGGATTCCAA+TGG + tig0020796:6284-6303 Msa1386260:CDS 45.0%
CCCATTGGAATCCAGTTGTT+TGG - tig0020796:6288-6307 None:intergenic 45.0%
GGTAGTGTAATCTGGGTTCT+TGG - tig0020796:6342-6361 None:intergenic 45.0%
AGAACCCAGATTACACTACC+GGG + tig0020796:6342-6361 Msa1386260:CDS 45.0%
TGTACCCGGTAGTGTAATCT+GGG - tig0020796:6349-6368 None:intergenic 45.0%
TTGTACCCGGTAGTGTAATC+TGG - tig0020796:6350-6369 None:intergenic 45.0%
GGCAGTGTTGTAAGGTTCAA+TGG - tig0020796:6390-6409 None:intergenic 45.0%
AAGAACCCAGGTTACACTAC+CGG + tig0020796:6482-6501 Msa1386260:CDS 45.0%
GTTCATTGGATGCATGGGTA+TGG - tig0020796:6517-6536 None:intergenic 45.0%
GGCAGTGTTGTAAGGTTCAT+TGG - tig0020796:6531-6550 None:intergenic 45.0%
GAACCTTACAACACTGCCTA+TGG + tig0020796:6392-6411 Msa1386260:CDS 45.0%
GGAAGTTGTGTAAGGTCCAT+TGG - tig0020796:6693-6712 None:intergenic 45.0%
GGACCTTACACAACTTCCTA+TGG + tig0020796:6695-6714 Msa1386260:CDS 45.0%
CGGATATAACACTCATACCC+AGG + tig0020796:6751-6770 Msa1386260:CDS 45.0%
CAGCAGATATGTACCCGTTA+AGG - tig0020796:6835-6854 None:intergenic 45.0%
! CTTAACGGGTACATATCTGC+TGG + tig0020796:6833-6852 Msa1386260:CDS 45.0%
TCTGCTGGAAATGACCCAAA+AGG + tig0020796:6848-6867 Msa1386260:CDS 45.0%
! ATCGTTTGAGGTGGTAGATG+GGG - tig0020796:6876-6895 None:intergenic 45.0%
! GATCGTTTGAGGTGGTAGAT+GGG - tig0020796:6877-6896 None:intergenic 45.0%
! AGATCGTTTGAGGTGGTAGA+TGG - tig0020796:6878-6897 None:intergenic 45.0%
ACCACCTCAAACGATCTAGA+AGG + tig0020796:6881-6900 Msa1386260:CDS 45.0%
TGGTCCAAGTTAGGAGATTG+GGG - tig0020796:6908-6927 None:intergenic 45.0%
GTGGTCCAAGTTAGGAGATT+GGG - tig0020796:6909-6928 None:intergenic 45.0%
TGTGGTCCAAGTTAGGAGAT+TGG - tig0020796:6910-6929 None:intergenic 45.0%
CTACCTTGAAAGCTTCTGTG+TGG - tig0020796:6928-6947 None:intergenic 45.0%
CACACAGAAGCTTTCAAGGT+AGG + tig0020796:6926-6945 Msa1386260:CDS 45.0%
CACTTGGACGGGAAATTGAA+GGG - tig0020796:6993-7012 None:intergenic 45.0%
AAAGGAGAAACCACTTGGAC+GGG - tig0020796:7004-7023 None:intergenic 45.0%
GAAAGGAGAAACCACTTGGA+CGG - tig0020796:7005-7024 None:intergenic 45.0%
AGAGGAAAGGAGAAACCACT+TGG - tig0020796:7009-7028 None:intergenic 45.0%
AGTCTTTGTCTCCCCTGTAA+TGG - tig0020796:7164-7183 None:intergenic 45.0%
! TTTTGTAAAGGGACAGCCGT+TGG - tig0020796:7280-7299 None:intergenic 45.0%
GGATGACAAGCTACCCATTT+GGG - tig0020796:7340-7359 None:intergenic 45.0%
TGGATGACAAGCTACCCATT+TGG - tig0020796:7341-7360 None:intergenic 45.0%
! TACAGGGACTAGAGTGTTCA+AGG + tig0020796:7402-7421 Msa1386260:CDS 45.0%
GTGTTCAAGGTCTCACTTGT+CGG + tig0020796:7415-7434 Msa1386260:CDS 45.0%
GCCATTTGGACACATCTGAT+TGG + tig0020796:7476-7495 Msa1386260:CDS 45.0%
ACAGGTAAGAAGTGACACAC+TGG - tig0020796:7556-7575 None:intergenic 45.0%
ACCCACATAAGATGGTTCAC+AGG - tig0020796:7574-7593 None:intergenic 45.0%
GCATTGGAACCCACATAAGA+TGG - tig0020796:7582-7601 None:intergenic 45.0%
!! GAGGCTTTTGAAGGTTGCAT+TGG - tig0020796:7598-7617 None:intergenic 45.0%
!!! TTATAATTATAACTTTTTTA+AGG + tig0020796:4117-4136 Msa1386260:intron 5.0%
!! TAAATAAAAATAAAAAAATG+GGG - tig0020796:4333-4352 None:intergenic 5.0%
!! GATAAATAAAAATAAAAAAA+TGG - tig0020796:4335-4354 None:intergenic 5.0%
!!! TTTTATTTTTTCTTTATATT+TGG + tig0020796:5251-5270 Msa1386260:intron 5.0%
!!! CAATATTATTATTTATTTTT+TGG + tig0020796:5446-5465 Msa1386260:intron 5.0%
TGATAGTTGGGGTCTTGGAG+AGG + tig0020796:3814-3833 Msa1386260:intron 50.0%
GATAGTTGGGGTCTTGGAGA+GGG + tig0020796:3815-3834 Msa1386260:intron 50.0%
ATAGTTGGGGTCTTGGAGAG+GGG + tig0020796:3816-3835 Msa1386260:intron 50.0%
CAGCTCTACCTTCAAGTCTC+TGG - tig0020796:5655-5674 None:intergenic 50.0%
GAAGGTAGAGCTGCAAGATC+AGG + tig0020796:5662-5681 Msa1386260:CDS 50.0%
GCTGCAAGATCAGGATCAAG+TGG + tig0020796:5671-5690 Msa1386260:CDS 50.0%
CCTCCGTACTGGGTAATGTA+TGG - tig0020796:5711-5730 None:intergenic 50.0%
CCATACATTACCCAGTACGG+AGG + tig0020796:5708-5727 Msa1386260:CDS 50.0%
TGGTTTACTGCCTCCGTACT+GGG - tig0020796:5721-5740 None:intergenic 50.0%
TTGGTTTACTGCCTCCGTAC+TGG - tig0020796:5722-5741 None:intergenic 50.0%
CTAAGCGAGCCTTACATGAC+TGG + tig0020796:5801-5820 Msa1386260:CDS 50.0%
CTAAGCGAGCCTTACATGAC+TGG + tig0020796:5801-5820 Msa1386260:CDS 50.0%
CTAAGCGAGCCTTACATGAC+TGG + tig0020796:5801-5820 Msa1386260:CDS 50.0%
CTGTATCCGCCAGTCATGTA+AGG - tig0020796:6041-6060 None:intergenic 50.0%
GGCGGATACAGACTTGCATA+CGG + tig0020796:6050-6069 Msa1386260:CDS 50.0%
CTAAGCGAGCCTTACATGAC+TGG + tig0020796:5801-5820 Msa1386260:CDS 50.0%
ACCCATACCCATGAATCCAG+TGG + tig0020796:6230-6249 Msa1386260:CDS 50.0%
GTCCACTGGATTCATGGGTA+TGG - tig0020796:6235-6254 None:intergenic 50.0%
GGCAGTTATGTAAGGTCCAC+TGG - tig0020796:6249-6268 None:intergenic 50.0%
! ATGGGTATGGGTCTTGTACC+CGG - tig0020796:5994-6013 None:intergenic 50.0%
GGTAGTGTAACCTGGGTTCT+TGG - tig0020796:6483-6502 None:intergenic 50.0%
AGAACCCAGGTTACACTACC+GGG + tig0020796:6483-6502 Msa1386260:CDS 50.0%
TGTACCCGGTAGTGTAACCT+GGG - tig0020796:6490-6509 None:intergenic 50.0%
TTGTACCCGGTAGTGTAACC+TGG - tig0020796:6491-6510 None:intergenic 50.0%
! ATGGGTATGGGTCTTGTACC+CGG - tig0020796:5994-6013 None:intergenic 50.0%
! TCGTTTGAGGTGGTAGATGG+GGG - tig0020796:6875-6894 None:intergenic 50.0%
GCCTTCTAGATCGTTTGAGG+TGG - tig0020796:6885-6904 None:intergenic 50.0%
GGTCCAAGTTAGGAGATTGG+GGG - tig0020796:6907-6926 None:intergenic 50.0%
GCTTCTGTGTGGTCCAAGTT+AGG - tig0020796:6917-6936 None:intergenic 50.0%
GGACCACACAGAAGCTTTCA+AGG + tig0020796:6922-6941 Msa1386260:CDS 50.0%
CCACTTGGACGGGAAATTGA+AGG - tig0020796:6994-7013 None:intergenic 50.0%
CCTTCAATTTCCCGTCCAAG+TGG + tig0020796:6991-7010 Msa1386260:CDS 50.0%
GGGAGTTGTGACATTGCAAG+AGG - tig0020796:7055-7074 None:intergenic 50.0%
! GAGCATGGACTCTAGAGAGT+TGG - tig0020796:7191-7210 None:intergenic 50.0%
TCACTTGTCGGTGATGCGAA+TGG + tig0020796:7427-7446 Msa1386260:CDS 50.0%
ACACACTGGAGAGTTCTTCC+CGG - tig0020796:7542-7561 None:intergenic 50.0%
AGCGAGCCTTACATGACTGG+CGG + tig0020796:5804-5823 Msa1386260:CDS 55.0%
CTGTACCCGCCAGTCATGTA+AGG - tig0020796:5813-5832 None:intergenic 55.0%
GGCGGGTACAGACTTGCATA+TGG + tig0020796:5822-5841 Msa1386260:CDS 55.0%
AGCGAGCCTTACATGACTGG+CGG + tig0020796:5804-5823 Msa1386260:CDS 55.0%
CTGTACCCGCCAGTCATGTA+AGG - tig0020796:5813-5832 None:intergenic 55.0%
GGCGGGTACAGACTTGCATA+TGG + tig0020796:5822-5841 Msa1386260:CDS 55.0%
AGCGAGCCTTACATGACTGG+CGG + tig0020796:5804-5823 Msa1386260:CDS 55.0%
AGCGAGCCTTACATGACTGG+CGG + tig0020796:5804-5823 Msa1386260:CDS 55.0%
CTGTACCCGCCAGTCATGTA+AGG - tig0020796:5813-5832 None:intergenic 55.0%
GGCGGGTACAGACTTGCATA+TGG + tig0020796:5822-5841 Msa1386260:CDS 55.0%
! TGGTAGATGGGGGGCCTTTT+GGG - tig0020796:6865-6884 None:intergenic 55.0%
! CGTTTGAGGTGGTAGATGGG+GGG - tig0020796:6874-6893 None:intergenic 55.0%
GGGGCCTTCTAGATCGTTTG+AGG - tig0020796:6888-6907 None:intergenic 55.0%
AGGCCCCCAATCTCCTAACT+TGG + tig0020796:6901-6920 Msa1386260:CDS 55.0%
CACCAGCAAACCCTCACCAA+CGG + tig0020796:7261-7280 Msa1386260:CDS 55.0%
! AAAGGGACAGCCGTTGGTGA+GGG - tig0020796:7274-7293 None:intergenic 55.0%
TAAAGGGACAGCCGTTGGTG+AGG - tig0020796:7275-7294 None:intergenic 55.0%
AGGCAGCTTGGCATTAAGGC+CGG + tig0020796:7520-7539 Msa1386260:CDS 55.0%
GCGAGCCTTACATGACTGGC+GGG + tig0020796:5805-5824 Msa1386260:CDS 60.0%
GCGAGCCTTACATGACTGGC+GGG + tig0020796:5805-5824 Msa1386260:CDS 60.0%
GCGAGCCTTACATGACTGGC+GGG + tig0020796:5805-5824 Msa1386260:CDS 60.0%
! GTGGTAGATGGGGGGCCTTT+TGG - tig0020796:6866-6885 None:intergenic 60.0%
!! CGTTGGTGAGGGTTTGCTGG+TGG - tig0020796:7263-7282 None:intergenic 60.0%
! AGCCGTTGGTGAGGGTTTGC+TGG - tig0020796:7266-7285 None:intergenic 60.0%
GGCAGCTTGGCATTAAGGCC+GGG + tig0020796:7521-7540 Msa1386260:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0020796 gene 3741 7624 3741 ID=Msa1386260;Name=Msa1386260
tig0020796 mRNA 3741 7624 3741 ID=Msa1386260-mRNA-1;Parent=Msa1386260;Name=Msa1386260-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|681
tig0020796 exon 3741 3794 3741 ID=Msa1386260-mRNA-1:exon:10069;Parent=Msa1386260-mRNA-1
tig0020796 exon 5633 7624 5633 ID=Msa1386260-mRNA-1:exon:10070;Parent=Msa1386260-mRNA-1
tig0020796 CDS 3741 3794 3741 ID=Msa1386260-mRNA-1:cds;Parent=Msa1386260-mRNA-1
tig0020796 CDS 5633 7624 5633 ID=Msa1386260-mRNA-1:cds;Parent=Msa1386260-mRNA-1
Gene Sequence

>Msa1386260

ATGGCTACTGCACTAGCACTTCAGTTCCTCACAGTAGTTCTTTTCTTCTTTATGATTGGCCAAGAAATCAATGCCAGAGACTTGAAGGTAGAGCTGCAAGATCAGGATCAAGTGGACTCGAATGATAAACCATACATTACCCAGTACGGAGGCAGTAAACCAAATTACCCAGCTTCATACACCACCATCAAACACAACAAGCATATATCACATCTCGAAAAGCTAAGCGAGCCTTACATGACTGGCGGGTACAGACTTGCATATGGTAAACATGAAGCCAAGAACCCGGATTACACTACAGGGTACAAGATACATACCCATGAATCTAATGAAAAGCTAAGCGAGCCTTACATGACTGGCGGGTACAGACTTGCATATGGTAAACATGAAGCCAAGAACCCGGATTACACTACAGGGTACAAGACCCATACCCATGAATCTAATGAAAAGCTAAGCGAGCCTTACATGACTGGCGGATACAGACTTGCATACGGTAAACATGAAGCCAAGAACCCGGATTACACTACAGGGTACAAGACCCATTCCCATGAATCCAATGAAAAGCTAAGCGAGCCTTACATGACTGGCGGGTACAGACTTGCATATGGTAAACATGAAGCCAAGAACCCGGATTACACTACAGGGTACAAGACCCATACCCATGAATCCAGTGGACCTTACATAACTGCCTACGGAAGACATGAAGCCAAACAACTGGATTCCAATGGGCCTTACATTACTCAATATGGTAAACATGAAACCAAGAACCCAGATTACACTACCGGGTACAAGACCCATACCCATGAATCCATTGAACCTTACAACACTGCCTATGCTAAACATGAAGCCAAACAATCAGAATCCAATGGGCCTTACATAACTCAATATCGTAAACATGAAACCAAGAACCCAGGTTACACTACCGGGTACAAGACCCATACCCATGCATCCAATGAACCTTACAACACTGCCTATGGTAAACATGAAGCCAAACAATCAGAATCCAATGGACCTTACATAACTCAATATGGTAAACATGAAGCCAAACAATCAGAATCCAATGGGCCTTACATAACTCAATATGGTAAACATGAAGCCAAACAACAAGAATCCAATGGACCTTACACAACTTCCTATGGTAAACAAGAAGCAAAGCAACAAAGTTACAATACCGGATATAACACTCATACCCAGGAATCTAATGAATTGTACGTATCTGCATATGGTAACCATGAAGCCAAGCAACCAAATTACCTTAACGGGTACATATCTGCTGGAAATGACCCAAAAGGCCCCCCATCTACCACCTCAAACGATCTAGAAGGCCCCCAATCTCCTAACTTGGACCACACAGAAGCTTTCAAGGTAGGATTTTTCAATTTGGATGATCTTTATGCTGAAAATGTAATGACCCTTCAATTTCCCGTCCAAGTGGTTTCTCCTTTCCTCTCTAAAAAAGAGTCTGACTCCATTCCTCTTGCAATGTCACAACTCCCAAGTGTTTTTCAACTCTTCTCAATCCCTGAAGATTCTCCTCAAGCTAAATCCATGATAAATTCACTTGGAGAGTGTGAATCGGAAACCATTACAGGGGAGACAAAGACTTGTGCCAACTCTCTAGAGTCCATGCTCGAATTTGTTGACATGATCATTGGTTCAGACGCCAAACATAGTATTCTCACCACCAGCAAACCCTCACCAACGGCTGTCCCTTTACAAAAGTACACCATTTTGGAAGTATCACATGATATTGATGCTCCCAAATGGGTAGCTTGTCATCCACTCTCATATCCATATGCCATTTACTTTTGTCATTACATAGCTACAGGGACTAGAGTGTTCAAGGTCTCACTTGTCGGTGATGCGAATGGAGATAAAATGGAAGCTGTTGGAATTTGCCATTTGGACACATCTGATTGGAACCCAGATCATATTATATTTAGGCAGCTTGGCATTAAGGCCGGGAAGAACTCTCCAGTGTGTCACTTCTTACCTGTGAACCATCTTATGTGGGTTCCAATGCAACCTTCAAAAGCCTCCATGTGA
Protein sequence

>Msa1386260

MATALALQFLTVVLFFFMIGQEINARDLKVELQDQDQVDSNDKPYITQYGGSKPNYPASYTTIKHNKHISHLEKLSEPYMTGGYRLAYGKHEAKNPDYTTGYKIHTHESNEKLSEPYMTGGYRLAYGKHEAKNPDYTTGYKTHTHESNEKLSEPYMTGGYRLAYGKHEAKNPDYTTGYKTHSHESNEKLSEPYMTGGYRLAYGKHEAKNPDYTTGYKTHTHESSGPYITAYGRHEAKQLDSNGPYITQYGKHETKNPDYTTGYKTHTHESIEPYNTAYAKHEAKQSESNGPYITQYRKHETKNPGYTTGYKTHTHASNEPYNTAYGKHEAKQSESNGPYITQYGKHEAKQSESNGPYITQYGKHEAKQQESNGPYTTSYGKQEAKQQSYNTGYNTHTQESNELYVSAYGNHEAKQPNYLNGYISAGNDPKGPPSTTSNDLEGPQSPNLDHTEAFKVGFFNLDDLYAENVMTLQFPVQVVSPFLSKKESDSIPLAMSQLPSVFQLFSIPEDSPQAKSMINSLGECESETITGETKTCANSLESMLEFVDMIIGSDAKHSILTTSKPSPTAVPLQKYTILEVSHDIDAPKWVACHPLSYPYAIYFCHYIATGTRVFKVSLVGDANGDKMEAVGICHLDTSDWNPDHIIFRQLGIKAGKNSPVCHFLPVNHLMWVPMQPSKASM*