AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0675620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0675620 MtrunA17_Chr4g0019021 62.626 99 25 2 1 87 1 99 2.44e-36 120
Msa0675620 MtrunA17_Chr4g0019001 84.783 46 7 0 89 134 26 71 5.79e-22 82.8
Msa0675620 MtrunA17_Chr8g0368881 37.500 136 31 4 1 134 1 84 2.38e-19 76.6
Msa0675620 MtrunA17_Chr4g0019351 42.222 90 45 4 1 83 1 90 6.08e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 21 sgRNAs with CRISPR-Local

Find 739 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGTAGCTTTCTATTCTTA+TGG 0.240515 4_4:+24806419 None:intergenic
CCTCTCTTACATCGCTGATC+TGG 0.242771 4_4:+24806394 None:intergenic
CCCGTTGTACTTAATAAAAC+TGG 0.320363 4_4:-24806343 Msa0675620:CDS
CTCTCTTACATCGCTGATCT+GGG 0.334871 4_4:+24806395 None:intergenic
TTTCGTAGTTTCAGATGAAA+TGG 0.336301 4_4:-24798026 Msa0675620:intron
AAAGCAACAAGGAACATTCT+TGG 0.424631 4_4:-24806550 Msa0675620:CDS
CTCTCTTACATCGTTGATCT+CGG 0.425873 4_4:+24797981 None:intergenic
CACTTACTTGCATACATGTC+AGG 0.457216 4_4:+24806523 None:intergenic
TTCGTAGTTTCAGATGAAAT+GGG 0.487324 4_4:-24798025 Msa0675620:intron
AGTTCGAGTGCCTAGGGAAA+AGG 0.497239 4_4:-24797933 Msa0675620:CDS
GAATTGTTCTCTTATTTGTG+TGG 0.543421 4_4:-24806605 Msa0675620:CDS
CAATGAAGTTCGAGTGCCTA+GGG 0.554230 4_4:-24797939 Msa0675620:CDS
CCAGATCAGCGATGTAAGAG+AGG 0.582999 4_4:-24806394 Msa0675620:CDS
CGAGATCAACGATGTAAGAG+AGG 0.599007 4_4:-24797980 Msa0675620:CDS
TCAATGAAGTTCGAGTGCCT+AGG 0.628720 4_4:-24797940 Msa0675620:CDS
TCGAACTTCATTGACTTCAG+CGG 0.629535 4_4:+24797949 None:intergenic
CAAAGATAATTGTGGCAACG+TGG 0.635399 4_4:+24797899 None:intergenic
TCTCTTACATCGCTGATCTG+GGG 0.649695 4_4:+24806396 None:intergenic
AGCCAGATCAAAGATAATTG+TGG 0.653907 4_4:+24797891 None:intergenic
TGTATTTAATAAAACTCACG+AGG 0.693276 4_4:-24806317 Msa0675620:CDS
GTTTCTCTACTAAAGCAACA+AGG 0.710702 4_4:-24806561 Msa0675620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTAATAATTAATT+AGG + chr4_4:24801488-24801507 None:intergenic 0.0%
!!! TTTAATTTAAATAATTAATT+AGG - chr4_4:24802183-24802202 Msa0675620:intron 0.0%
!!! ATATATAATTTGTTCTTTTA+TGG - chr4_4:24798059-24798078 Msa0675620:intron 10.0%
!!! AAATGAGTTTTTTTTTTTTT+GGG + chr4_4:24798892-24798911 None:intergenic 10.0%
!! ATATACATATAAATAGTTAA+AGG + chr4_4:24800602-24800621 None:intergenic 10.0%
!!! AATTTTAATAATTAATTAGG+TGG + chr4_4:24801485-24801504 None:intergenic 10.0%
!! AATTTAAATAATTAATTAGG+TGG - chr4_4:24802186-24802205 Msa0675620:intron 10.0%
!!! AATATTTTGTTTATTTTGTT+GGG + chr4_4:24802503-24802522 None:intergenic 10.0%
!! TATAAAAGACATATATTAGA+TGG - chr4_4:24798315-24798334 Msa0675620:intron 15.0%
!!! GAAATGAGTTTTTTTTTTTT+TGG + chr4_4:24798893-24798912 None:intergenic 15.0%
!! TTCATAGTTTATCAATTATT+CGG + chr4_4:24800755-24800774 None:intergenic 15.0%
!! TTAACATAACACTTATATTA+TGG + chr4_4:24801097-24801116 None:intergenic 15.0%
!! CTTATTTATTTGTAACATTT+AGG - chr4_4:24801183-24801202 Msa0675620:intron 15.0%
!!! GTTAATGTTTTAAAAGATAA+AGG + chr4_4:24801239-24801258 None:intergenic 15.0%
!!! AAATTCTGAGTTTTAAAATA+GGG + chr4_4:24802268-24802287 None:intergenic 15.0%
!!! AAAATTCTGAGTTTTAAAAT+AGG + chr4_4:24802267-24802286 None:intergenic 15.0%
!!! TTTTTTTTTTCTGCATTTTA+AGG + chr4_4:24801574-24801593 None:intergenic 15.0%
!! AGAAAATAAAGATAAAATGT+AGG - chr4_4:24801596-24801615 Msa0675620:intron 15.0%
!! AGAAAATAAAGATAAAATGT+AGG - chr4_4:24801596-24801615 Msa0675620:intron 15.0%
!! AAAATTCCATTAAAAATACA+TGG - chr4_4:24801739-24801758 Msa0675620:intron 15.0%
!!! TTTTTTCATGTACTTTTAAT+GGG + chr4_4:24801791-24801810 None:intergenic 15.0%
!!! TTTTTTTCATGTACTTTTAA+TGG + chr4_4:24801792-24801811 None:intergenic 15.0%
!! AAAATCCAATAAAAATACAT+GGG + chr4_4:24801925-24801944 None:intergenic 15.0%
!! AAAAATCCAATAAAAATACA+TGG + chr4_4:24801926-24801945 None:intergenic 15.0%
!! AGCAAATAAATATAAAATGT+AGG + chr4_4:24801969-24801988 None:intergenic 15.0%
!! AGAAAATAAAGATAAAATGT+AGG + chr4_4:24801596-24801615 None:intergenic 15.0%
!! AATTCCGAAAAATATTAAAT+TGG - chr4_4:24802238-24802257 Msa0675620:intron 15.0%
!! ATTCCGAAAAATATTAAATT+GGG - chr4_4:24802239-24802258 Msa0675620:intron 15.0%
!!! AAAATTCTGAGTTTTAAAAT+AGG - chr4_4:24802267-24802286 Msa0675620:intron 15.0%
!!! AAATTCTGAGTTTTAAAATA+GGG - chr4_4:24802268-24802287 Msa0675620:intron 15.0%
!!! GAATATTTTGTTTATTTTGT+TGG + chr4_4:24802504-24802523 None:intergenic 15.0%
!! TTATTTGAACCATTATAATT+TGG + chr4_4:24802595-24802614 None:intergenic 15.0%
!! ATCCAATTAAATATGAAAAA+CGG - chr4_4:24804243-24804262 Msa0675620:intron 15.0%
!! TAAAAATATTTAGTTACTCA+TGG + chr4_4:24805478-24805497 None:intergenic 15.0%
!!! ATGAGTAACTAAATATTTTT+AGG - chr4_4:24805477-24805496 Msa0675620:intron 15.0%
!!! AACTAAATATTTTTAGGATA+TGG - chr4_4:24805483-24805502 Msa0675620:intron 15.0%
!! CATGAAATTGTAATACAATA+CGG + chr4_4:24798273-24798292 None:intergenic 20.0%
!!! TCTTTTATACAATTATTCTC+TGG + chr4_4:24798304-24798323 None:intergenic 20.0%
!! ACTAGAATATGTTAGAAAAT+GGG - chr4_4:24798467-24798486 Msa0675620:intron 20.0%
!!! AGTTTTTTTTTTTTTGGGTA+TGG + chr4_4:24798887-24798906 None:intergenic 20.0%
!!! AAGTAATGAAGATTTGTTTT+CGG - chr4_4:24799404-24799423 Msa0675620:intron 20.0%
!!! TAATGTAATGACCAATTTTT+AGG - chr4_4:24800561-24800580 Msa0675620:intron 20.0%
!!! AATGTAATGACCAATTTTTA+GGG - chr4_4:24800562-24800581 Msa0675620:intron 20.0%
!! TAAAGAAACCATAAATAGAA+AGG - chr4_4:24801138-24801157 Msa0675620:intron 20.0%
!!! TAATTTTGCCTTTCTATTTA+TGG + chr4_4:24801149-24801168 None:intergenic 20.0%
!!! TCCTTTTTTTCTCATTTTTT+AGG - chr4_4:24801266-24801285 Msa0675620:intron 20.0%
!!! AAATTCCGAGTTTTAAAATA+GGG + chr4_4:24802328-24802347 None:intergenic 20.0%
!!! AAAATTCCGAGTTTTAAAAT+AGG + chr4_4:24802327-24802346 None:intergenic 20.0%
!! AATTCCGAAAAACATTAAAT+TGG + chr4_4:24802298-24802317 None:intergenic 20.0%
!!! AATTCTGAGTTTTAAAATAG+GGG + chr4_4:24802269-24802288 None:intergenic 20.0%
!! ATTCCGAAAAACATTAAATT+GGG + chr4_4:24802299-24802318 None:intergenic 20.0%
!! AATTCCGAAAAACATTAAAT+TGG + chr4_4:24802298-24802317 None:intergenic 20.0%
!!! TAGTATTTTTCTGCATTTTA+AGG + chr4_4:24801675-24801694 None:intergenic 20.0%
!!! GGAATTTTTTTTGTTTATTC+TGG + chr4_4:24801727-24801746 None:intergenic 20.0%
!!! GTTTTTCCATGTATTTTTAA+TGG + chr4_4:24801748-24801767 None:intergenic 20.0%
!! TATTTGGATGATCAATTATT+AGG + chr4_4:24801876-24801895 None:intergenic 20.0%
!! AAAAATACATGGCTAATATT+TGG + chr4_4:24801892-24801911 None:intergenic 20.0%
!!! TATTAGCCATGTATTTTTAA+TGG - chr4_4:24801894-24801913 Msa0675620:intron 20.0%
!! GAAATTCCATTAAAAATACA+TGG + chr4_4:24801903-24801922 None:intergenic 20.0%
!!! AATTTCCCATGTATTTTTAT+TGG - chr4_4:24801917-24801936 Msa0675620:intron 20.0%
!!! TTGGATTTTTTTGTTTATTC+TGG - chr4_4:24801936-24801955 Msa0675620:intron 20.0%
!!! AGTATTTTTTCTGCATTTTA+AGG - chr4_4:24801989-24802008 Msa0675620:intron 20.0%
!!! AGAATTTTTTCTGCATTTTA+AGG - chr4_4:24802098-24802117 Msa0675620:intron 20.0%
!! TTCCGAAAAATATTAAATTG+GGG - chr4_4:24802240-24802259 Msa0675620:intron 20.0%
!!! AATTCTGAGTTTTAAAATAG+GGG - chr4_4:24802269-24802288 Msa0675620:intron 20.0%
!! AATTCCGAAAAACATTAAAT+TGG - chr4_4:24802298-24802317 Msa0675620:intron 20.0%
!! ATTCCGAAAAACATTAAATT+GGG - chr4_4:24802299-24802318 Msa0675620:intron 20.0%
!!! GCGTTTTCTTAATAAAAAAT+GGG + chr4_4:24802405-24802424 None:intergenic 20.0%
!!! AGCGTTTTCTTAATAAAAAA+TGG + chr4_4:24802406-24802425 None:intergenic 20.0%
!! TTACTAATAATAATCTGATG+TGG + chr4_4:24802440-24802459 None:intergenic 20.0%
!!! AGATTTTGATTAGAATTTGA+TGG + chr4_4:24802565-24802584 None:intergenic 20.0%
!!! CTTTTCATATGTTTTGTTTA+TGG + chr4_4:24802713-24802732 None:intergenic 20.0%
!! ATTAGTTAAATAATGTCTCA+AGG - chr4_4:24802774-24802793 Msa0675620:intron 20.0%
!! AGCATTTCTCATATTATAAT+CGG - chr4_4:24802806-24802825 Msa0675620:intron 20.0%
!! GAAAGATAAATAATGCATAA+AGG + chr4_4:24803177-24803196 None:intergenic 20.0%
!!! AAGGCATTTTTGAATATTTT+CGG - chr4_4:24803810-24803829 Msa0675620:intron 20.0%
!! ATAAATTGCAACCTAATTAT+TGG - chr4_4:24803936-24803955 Msa0675620:intron 20.0%
!! TAAATTGCAACCTAATTATT+GGG - chr4_4:24803937-24803956 Msa0675620:intron 20.0%
!! TACAAGTCAAAAAAATTTAG+AGG + chr4_4:24804096-24804115 None:intergenic 20.0%
!! ATATAACATCAAACTTGAAA+GGG + chr4_4:24804450-24804469 None:intergenic 20.0%
!! TATATAACATCAAACTTGAA+AGG + chr4_4:24804451-24804470 None:intergenic 20.0%
!! TCAAGTTTGATGTTATATAT+TGG - chr4_4:24804452-24804471 Msa0675620:intron 20.0%
!!! AAATTTTACATCAAGAATAG+AGG - chr4_4:24804811-24804830 Msa0675620:intron 20.0%
!! AGAAATAAAGATTTATGTAC+CGG - chr4_4:24805103-24805122 Msa0675620:intron 20.0%
!!! GGAAATTTATTAAAAGTACA+GGG + chr4_4:24805907-24805926 None:intergenic 20.0%
!!! TGGAAATTTATTAAAAGTAC+AGG + chr4_4:24805908-24805927 None:intergenic 20.0%
!! ATTATATATAGTTAGTTGCA+TGG + chr4_4:24805928-24805947 None:intergenic 20.0%
!! TATTTATAATGCAAATTCGA+TGG + chr4_4:24806205-24806224 None:intergenic 20.0%
!! TAATATAGGAAACAATTGTT+TGG + chr4_4:24806460-24806479 None:intergenic 20.0%
!! ACGAAAAAACGAATTAATAT+AGG + chr4_4:24806474-24806493 None:intergenic 20.0%
!!! ACCAGTTTTATTAAGTACAA+CGG + chr4_4:24798175-24798194 None:intergenic 25.0%
! TGTATTTAATAAAACTCACG+AGG - chr4_4:24798197-24798216 Msa0675620:intron 25.0%
! CGTATTGTATTACAATTTCA+TGG - chr4_4:24798271-24798290 Msa0675620:intron 25.0%
!! CATTTTCTAACATATTCTAG+TGG + chr4_4:24798468-24798487 None:intergenic 25.0%
! CACTAGAATATGTTAGAAAA+TGG - chr4_4:24798466-24798485 Msa0675620:intron 25.0%
! ATATGTTAGAAAATGGGATT+TGG - chr4_4:24798473-24798492 Msa0675620:intron 25.0%
!! CAAAAGCAATTTTCTTTTCT+AGG + chr4_4:24798666-24798685 None:intergenic 25.0%
!!! TTTTTTTTTGGGTATGGTAT+AGG + chr4_4:24798881-24798900 None:intergenic 25.0%
! TTCCACAAAAATAAAGTTCA+TGG + chr4_4:24799208-24799227 None:intergenic 25.0%
!!! ATTTCTAGTTTCATTTGGAA+CGG + chr4_4:24799474-24799493 None:intergenic 25.0%
!!! CTTTGATTTCTAGTTTCATT+TGG + chr4_4:24799479-24799498 None:intergenic 25.0%
! AATGAAACTAGAAATCAAAG+AGG - chr4_4:24799479-24799498 Msa0675620:intron 25.0%
! TCTTCACAAACTAAAAGAAA+AGG - chr4_4:24799672-24799691 Msa0675620:intron 25.0%
!!! AATTTTGGCATGTAATACAT+AGG + chr4_4:24799771-24799790 None:intergenic 25.0%
! AAAGAAGGACAAAATGATTT+GGG + chr4_4:24800202-24800221 None:intergenic 25.0%
!! AACCATCTTTTAATGAAAGA+AGG + chr4_4:24800217-24800236 None:intergenic 25.0%
! AATTATGTTTAATGACACTC+CGG - chr4_4:24800403-24800422 Msa0675620:intron 25.0%
! TTACATATCACCCTAAAAAT+TGG + chr4_4:24800575-24800594 None:intergenic 25.0%
!! GTTTTACCTGTAATTTCAAA+CGG + chr4_4:24800836-24800855 None:intergenic 25.0%
! ATAGAAAGGCAAAATTATGT+TGG - chr4_4:24801152-24801171 Msa0675620:intron 25.0%
! AAAAGATAAAGGACTTGAAT+GGG + chr4_4:24801228-24801247 None:intergenic 25.0%
! TAAAAGATAAAGGACTTGAA+TGG + chr4_4:24801229-24801248 None:intergenic 25.0%
! GCCTAAAAAATGAGAAAAAA+AGG + chr4_4:24801270-24801289 None:intergenic 25.0%
!!! AATTCCGAGTTTTAAAATAG+GGG + chr4_4:24802329-24802348 None:intergenic 25.0%
!!! ATTCTGAGTTTTAAAATAGG+GGG + chr4_4:24802270-24802289 None:intergenic 25.0%
! TTCCGAAAAACATTAAATTG+GGG + chr4_4:24802300-24802319 None:intergenic 25.0%
! ATAATGCACCTGTAAATATT+TGG - chr4_4:24801814-24801833 Msa0675620:intron 25.0%
! ATGATCATCCAAATATTTAC+AGG + chr4_4:24801825-24801844 None:intergenic 25.0%
! TATTATTGCACTCGTATATT+TGG + chr4_4:24801851-24801870 None:intergenic 25.0%
! ATAATAAGATAATGTGGTAG+AGG - chr4_4:24802209-24802228 Msa0675620:intron 25.0%
! TAATAAGATAATGTGGTAGA+GGG - chr4_4:24802210-24802229 Msa0675620:intron 25.0%
! TCCGAAAAATATTAAATTGG+GGG - chr4_4:24802241-24802260 Msa0675620:intron 25.0%
!!! ATTCTGAGTTTTAAAATAGG+GGG - chr4_4:24802270-24802289 Msa0675620:intron 25.0%
! TTCCGAAAAACATTAAATTG+GGG - chr4_4:24802300-24802319 Msa0675620:intron 25.0%
!!! AATTCCGAGTTTTAAAATAG+TGG - chr4_4:24802329-24802348 Msa0675620:intron 25.0%
!!! ATTCCGAGTTTTAAAATAGT+GGG - chr4_4:24802330-24802349 Msa0675620:intron 25.0%
!! TTTTTATTAAGAAAACGCTG+AGG - chr4_4:24802407-24802426 Msa0675620:intron 25.0%
! CTCAAATCTCCAAATTATAA+TGG - chr4_4:24802583-24802602 Msa0675620:intron 25.0%
! ATTGAAGATGAATGTTAAGA+GGG + chr4_4:24802658-24802677 None:intergenic 25.0%
! GCATTTCTCATATTATAATC+GGG - chr4_4:24802807-24802826 Msa0675620:intron 25.0%
! CATTTCTCATATTATAATCG+GGG - chr4_4:24802808-24802827 Msa0675620:intron 25.0%
! GTGATTGAAGGAAATAATTT+GGG + chr4_4:24803299-24803318 None:intergenic 25.0%
! AGTGATTGAAGGAAATAATT+TGG + chr4_4:24803300-24803319 None:intergenic 25.0%
! ATTACCATTTATGATCAGAA+GGG + chr4_4:24803362-24803381 None:intergenic 25.0%
! AATTACCATTTATGATCAGA+AGG + chr4_4:24803363-24803382 None:intergenic 25.0%
!!! TATAATTCATTTGGTGGTTT+TGG - chr4_4:24803431-24803450 Msa0675620:intron 25.0%
! ATAAGAAGTGAGAATTACTA+GGG + chr4_4:24803570-24803589 None:intergenic 25.0%
! ACTTCTTATCATATTTAGTG+TGG - chr4_4:24803581-24803600 Msa0675620:intron 25.0%
! TTATCATATTTAGTGTGGAT+GGG - chr4_4:24803586-24803605 Msa0675620:intron 25.0%
! AATGCAGTCAATTATAGAAA+AGG + chr4_4:24803840-24803859 None:intergenic 25.0%
! ATGCAAGAAATATGATTGAA+AGG + chr4_4:24803897-24803916 None:intergenic 25.0%
!! ATTAGGTTGCAATTTATATG+TGG + chr4_4:24803933-24803952 None:intergenic 25.0%
! AAATTGCAACCTAATTATTG+GGG - chr4_4:24803938-24803957 Msa0675620:intron 25.0%
! AAAAAAAAAATGAACCACCA+TGG - chr4_4:24804051-24804070 Msa0675620:intron 25.0%
! AAAAAAATTTAGAGGTTGCT+GGG + chr4_4:24804088-24804107 None:intergenic 25.0%
!!! AAATTTTTTTGACTTGTACG+AGG - chr4_4:24804098-24804117 Msa0675620:intron 25.0%
!!! TGCCGTTTTTCATATTTAAT+TGG + chr4_4:24804248-24804267 None:intergenic 25.0%
!! TTCTCAAAATGAAGCTTTAA+TGG - chr4_4:24804277-24804296 Msa0675620:intron 25.0%
!! ATAACAAATTACCTCTCTTT+TGG - chr4_4:24804410-24804429 Msa0675620:intron 25.0%
!! TAACAAATTACCTCTCTTTT+GGG - chr4_4:24804411-24804430 Msa0675620:intron 25.0%
! AGTTTGATGTTATATATTGG+CGG - chr4_4:24804455-24804474 Msa0675620:intron 25.0%
! AGAATTTAACCTTTCCATAT+CGG + chr4_4:24804496-24804515 None:intergenic 25.0%
! ATATGGAAAGGTTAAATTCT+GGG - chr4_4:24804496-24804515 Msa0675620:intron 25.0%
! TCTCACTTAATCAATCAATT+TGG + chr4_4:24804560-24804579 None:intergenic 25.0%
!!! TATTAGGATGTTTTTGTCAT+AGG - chr4_4:24804590-24804609 Msa0675620:intron 25.0%
!!! ATTAGGATGTTTTTGTCATA+GGG - chr4_4:24804591-24804610 Msa0675620:intron 25.0%
!!! TGATTTTTGCTACTTTTAAG+TGG - chr4_4:24805255-24805274 Msa0675620:intron 25.0%
!! AATGAAAGGTTTGGTATTTA+CGG + chr4_4:24805323-24805342 None:intergenic 25.0%
! CTACTTATCACTTTATTACT+TGG - chr4_4:24805566-24805585 Msa0675620:intron 25.0%
! TTTCGACTAAGCAATTTAAA+TGG - chr4_4:24805660-24805679 Msa0675620:intron 25.0%
! CTCTTAATAATGACTCAATT+AGG + chr4_4:24805810-24805829 None:intergenic 25.0%
!!! AAATAAGTTCTCCCTTATTT+TGG - chr4_4:24806274-24806293 Msa0675620:intron 25.0%
! GAATTGTTCTCTTATTTGTG+TGG - chr4_4:24797909-24797928 Msa0675620:CDS 30.0%
CAAGTAGCTTTCTATTCTTA+TGG + chr4_4:24798098-24798117 None:intergenic 30.0%
!!! CCAGTTTTATTAAGTACAAC+GGG + chr4_4:24798174-24798193 None:intergenic 30.0%
AGATCGATCAAAGATAATTG+TGG + chr4_4:24798248-24798267 None:intergenic 30.0%
ACAATTATCTTTGATCGATC+TGG - chr4_4:24798247-24798266 Msa0675620:intron 30.0%
TATTAGATGGCACTATTCAT+TGG - chr4_4:24798328-24798347 Msa0675620:intron 30.0%
! CATCTCATGTCAATTTTCTA+TGG - chr4_4:24798498-24798517 Msa0675620:intron 30.0%
!!! CAATTTTCTTTTCTAGGACA+CGG + chr4_4:24798660-24798679 None:intergenic 30.0%
GCAAAAAATAGATGAGATGT+TGG - chr4_4:24799080-24799099 Msa0675620:intron 30.0%
!!! AGCCATGAACTTTATTTTTG+TGG - chr4_4:24799203-24799222 Msa0675620:intron 30.0%
TATACAACATATGCCAATGT+GGG + chr4_4:24799371-24799390 None:intergenic 30.0%
ATATACAACATATGCCAATG+TGG + chr4_4:24799372-24799391 None:intergenic 30.0%
ACATTGGCATATGTTGTATA+TGG - chr4_4:24799371-24799390 Msa0675620:intron 30.0%
CATTGGCATATGTTGTATAT+GGG - chr4_4:24799372-24799391 Msa0675620:intron 30.0%
!!! CGTGTGGTTTTGATTTTTTT+GGG + chr4_4:24799579-24799598 None:intergenic 30.0%
!!! ACGTGTGGTTTTGATTTTTT+TGG + chr4_4:24799580-24799599 None:intergenic 30.0%
ATGTAATACATAGGATTGGA+TGG + chr4_4:24799762-24799781 None:intergenic 30.0%
! ATGTATGGTCTCATGAATTT+TGG + chr4_4:24799786-24799805 None:intergenic 30.0%
GAAAGAAGGACAAAATGATT+TGG + chr4_4:24800203-24800222 None:intergenic 30.0%
GTCCTTCTTTCATTAAAAGA+TGG - chr4_4:24800212-24800231 Msa0675620:intron 30.0%
!!! TCTTGATTTGTTGGCTTTTT+TGG + chr4_4:24800377-24800396 None:intergenic 30.0%
!! ATTGGATTGTCTTGATTTGT+TGG + chr4_4:24800386-24800405 None:intergenic 30.0%
! GGAGTGTCATTAAACATAAT+TGG + chr4_4:24800404-24800423 None:intergenic 30.0%
!!! AATTCGGTGTTTTCTTTAAC+CGG + chr4_4:24800425-24800444 None:intergenic 30.0%
TTCCAGAACATCTTCAAATT+CGG + chr4_4:24800441-24800460 None:intergenic 30.0%
! AGATGAAATGTGACACTTTT+TGG - chr4_4:24800484-24800503 Msa0675620:intron 30.0%
! GTGTAATGTTTTGCATAATG+TGG - chr4_4:24800666-24800685 Msa0675620:intron 30.0%
GTTAAACGTTAACGCATTAT+CGG - chr4_4:24800714-24800733 Msa0675620:intron 30.0%
ATGTTGATGTTTATGATTGC+TGG - chr4_4:24800775-24800794 Msa0675620:intron 30.0%
TAAAACAGAACACATTTCCT+GGG - chr4_4:24800850-24800869 Msa0675620:intron 30.0%
ATTCCGATTCAGTCAAAATA+GGG + chr4_4:24802359-24802378 None:intergenic 30.0%
AATTCCGATTCAGTCAAAAT+AGG + chr4_4:24802358-24802377 None:intergenic 30.0%
!!! ATTCCGAGTTTTAAAATAGG+GGG + chr4_4:24801341-24801360 None:intergenic 30.0%
CGAAAAACATTAAATTGGAG+GGG + chr4_4:24801368-24801387 None:intergenic 30.0%
CCGAAAAACATTAAATTGGA+GGG + chr4_4:24801369-24801388 None:intergenic 30.0%
! CCCTCCAATTTAATGTTTTT+CGG - chr4_4:24801366-24801385 Msa0675620:intron 30.0%
TCCGAAAAACATTAAATTGG+AGG + chr4_4:24802301-24802320 None:intergenic 30.0%
!!! TTCTGAGTTTTAAAATAGGG+GGG + chr4_4:24802271-24802290 None:intergenic 30.0%
TCCGAAAAACATTAAATTGG+GGG + chr4_4:24802301-24802320 None:intergenic 30.0%
! TAATAAGATAATGTGGTGGA+GGG + chr4_4:24801461-24801480 None:intergenic 30.0%
ATAATAAGATAATGTGGTGG+AGG + chr4_4:24801462-24801481 None:intergenic 30.0%
TGGATAATAAGATAATGTGG+TGG + chr4_4:24802206-24802225 None:intergenic 30.0%
AGGTGGATAATAAGATAATG+TGG + chr4_4:24802203-24802222 None:intergenic 30.0%
ACATGGAAAAACAGTATGAA+CGG - chr4_4:24801756-24801775 Msa0675620:intron 30.0%
AGGTGGATAATAAGATAATG+TGG - chr4_4:24802203-24802222 Msa0675620:intron 30.0%
AATAAGATAATGTGGTAGAG+GGG - chr4_4:24802211-24802230 Msa0675620:intron 30.0%
! CCCCCCAATTTAATATTTTT+CGG + chr4_4:24802245-24802264 None:intergenic 30.0%
CCGAAAAATATTAAATTGGG+GGG - chr4_4:24802242-24802261 Msa0675620:intron 30.0%
CGAAAAATATTAAATTGGGG+GGG - chr4_4:24802243-24802262 Msa0675620:intron 30.0%
!!! TTCTGAGTTTTAAAATAGGG+GGG - chr4_4:24802271-24802290 Msa0675620:intron 30.0%
TCCGAAAAACATTAAATTGG+GGG - chr4_4:24802301-24802320 Msa0675620:intron 30.0%
!!! TTCCGAGTTTTAAAATAGTG+GGG - chr4_4:24802331-24802350 Msa0675620:intron 30.0%
AATTCCGATTCAGTCAAAAT+AGG - chr4_4:24802358-24802377 Msa0675620:intron 30.0%
ATTCCGATTCAGTCAAAATA+GGG - chr4_4:24802359-24802378 Msa0675620:intron 30.0%
AAGATAAAGATTGGTAAGGT+TGG + chr4_4:24802632-24802651 None:intergenic 30.0%
GAAGAAGATAAAGATTGGTA+AGG + chr4_4:24802636-24802655 None:intergenic 30.0%
GATTGAAGATGAATGTTAAG+AGG + chr4_4:24802659-24802678 None:intergenic 30.0%
! TGTTGATTGACAATTGTTAC+TGG - chr4_4:24802954-24802973 Msa0675620:intron 30.0%
GTTGATTGACAATTGTTACT+GGG - chr4_4:24802955-24802974 Msa0675620:intron 30.0%
! AAGGAAATAATTTGGGATGT+GGG + chr4_4:24803292-24803311 None:intergenic 30.0%
TTACCATTTATGATCAGAAG+GGG + chr4_4:24803361-24803380 None:intergenic 30.0%
TTGGGCACATATAATTCATT+TGG - chr4_4:24803422-24803441 Msa0675620:intron 30.0%
!! AGGCTTTGAACAAAGAAAAT+AGG - chr4_4:24803454-24803473 Msa0675620:intron 30.0%
AATTACTAGGGAAAATAACG+AGG + chr4_4:24803558-24803577 None:intergenic 30.0%
GATAAGAAGTGAGAATTACT+AGG + chr4_4:24803571-24803590 None:intergenic 30.0%
CTTATCATATTTAGTGTGGA+TGG - chr4_4:24803585-24803604 Msa0675620:intron 30.0%
ATAAGTTCGTAAACCAGATA+TGG + chr4_4:24803631-24803650 None:intergenic 30.0%
ACGAACTTATAGATCCTATA+AGG - chr4_4:24803641-24803660 Msa0675620:intron 30.0%
CGAACTTATAGATCCTATAA+GGG - chr4_4:24803642-24803661 Msa0675620:intron 30.0%
TTATACTCCTCGTTAACATA+AGG + chr4_4:24803684-24803703 None:intergenic 30.0%
! TTATGTTAACGAGGAGTATA+AGG - chr4_4:24803683-24803702 Msa0675620:intron 30.0%
ATTCTCTATAAAGTCAAGGT+AGG - chr4_4:24803857-24803876 Msa0675620:intron 30.0%
TATGATTGAAAGGTCCTAAA+TGG + chr4_4:24803887-24803906 None:intergenic 30.0%
ATATTTCTTGCATGCCTTAA+GGG - chr4_4:24803904-24803923 Msa0675620:intron 30.0%
TTTATATGTGGAAACCCTTA+AGG + chr4_4:24803921-24803940 None:intergenic 30.0%
!! GATGGAAGAAAGTATTAGTT+CGG + chr4_4:24804012-24804031 None:intergenic 30.0%
CAAAAAAATTTAGAGGTTGC+TGG + chr4_4:24804089-24804108 None:intergenic 30.0%
CATGTACTTGAAATTCTTCA+TGG + chr4_4:24804127-24804146 None:intergenic 30.0%
TTAAATATGAAAAACGGCAG+AGG - chr4_4:24804249-24804268 Msa0675620:intron 30.0%
! AACAAATTACCTCTCTTTTG+GGG - chr4_4:24804412-24804431 Msa0675620:intron 30.0%
GATATGGAAAGGTTAAATTC+TGG - chr4_4:24804495-24804514 Msa0675620:intron 30.0%
TATGGAAAGGTTAAATTCTG+GGG - chr4_4:24804497-24804516 Msa0675620:intron 30.0%
!! ATCAATTTGGTGTCCAAAAA+AGG + chr4_4:24804547-24804566 None:intergenic 30.0%
TGACAAAAACATCCTAATAG+AGG + chr4_4:24804589-24804608 None:intergenic 30.0%
TGATGAAAAGGTTGAACAAT+GGG - chr4_4:24804614-24804633 Msa0675620:intron 30.0%
TGAGATGGAAAAACATGTTT+GGG - chr4_4:24804682-24804701 Msa0675620:intron 30.0%
!! AATAGAGGAGTATTAACAAC+CGG - chr4_4:24804826-24804845 Msa0675620:intron 30.0%
TTAACAACCGGTAATGATTT+CGG - chr4_4:24804838-24804857 Msa0675620:intron 30.0%
ATCAAGAATGAAGATTCAAG+AGG - chr4_4:24804998-24805017 Msa0675620:intron 30.0%
TATAAGATGACTTTGGACTT+GGG + chr4_4:24805058-24805077 None:intergenic 30.0%
ATATAAGATGACTTTGGACT+TGG + chr4_4:24805059-24805078 None:intergenic 30.0%
AAGTCCAAAGTCATCTTATA+TGG - chr4_4:24805058-24805077 Msa0675620:intron 30.0%
!! CTTTATTTCTTCGTCCTTTT+GGG + chr4_4:24805093-24805112 None:intergenic 30.0%
!! TCTTTATTTCTTCGTCCTTT+TGG + chr4_4:24805094-24805113 None:intergenic 30.0%
!! TACTTTTAAGTGGAAAAACC+TGG - chr4_4:24805265-24805284 Msa0675620:intron 30.0%
! ATGAAAGGTTTGGTATTTAC+GGG + chr4_4:24805322-24805341 None:intergenic 30.0%
ACCAAACCTTTCATTCATAA+TGG - chr4_4:24805328-24805347 Msa0675620:intron 30.0%
AATGAGCCATTATGAATGAA+AGG + chr4_4:24805337-24805356 None:intergenic 30.0%
! TAAAACATACTCTAGAGACT+TGG + chr4_4:24805429-24805448 None:intergenic 30.0%
! AAAACTTGATGGTCGAATAT+TGG + chr4_4:24805612-24805631 None:intergenic 30.0%
! ATATTCGACCATCAAGTTTT+TGG - chr4_4:24805612-24805631 Msa0675620:intron 30.0%
!! TCAAGTTTGCTAAAGTCTTA+GGG - chr4_4:24806111-24806130 Msa0675620:intron 30.0%
!! TGGTAGTTGCTTATTTTTCA+AGG + chr4_4:24806185-24806204 None:intergenic 30.0%
TAAATATGCATGTGTTGAGT+AGG - chr4_4:24806219-24806238 Msa0675620:intron 30.0%
AAATGCAGTAGCAAGAAAAA+TGG - chr4_4:24806247-24806266 Msa0675620:intron 30.0%
AAAGAGAACCACCAAAATAA+GGG + chr4_4:24806288-24806307 None:intergenic 30.0%
AAAAGAGAACCACCAAAATA+AGG + chr4_4:24806289-24806308 None:intergenic 30.0%
!! AATGTTTCTTGCTATTGCTT+TGG + chr4_4:24806333-24806352 None:intergenic 30.0%
TTTCGTAGTTTCAGATGAAA+TGG - chr4_4:24806488-24806507 Msa0675620:intron 30.0%
TTCGTAGTTTCAGATGAAAT+GGG - chr4_4:24806489-24806508 Msa0675620:intron 30.0%
GTTTCTCTACTAAAGCAACA+AGG - chr4_4:24797953-24797972 Msa0675620:CDS 35.0%
AAAGCAACAAGGAACATTCT+TGG - chr4_4:24797964-24797983 Msa0675620:CDS 35.0%
CCCGTTGTACTTAATAAAAC+TGG - chr4_4:24798171-24798190 Msa0675620:intron 35.0%
TCGCATTACGGTAGTTTAAA+TGG + chr4_4:24798610-24798629 None:intergenic 35.0%
GCATTAAGGTCATTTACTTG+TGG + chr4_4:24798709-24798728 None:intergenic 35.0%
ATGAATGAATAGCTGAGGTA+GGG + chr4_4:24798840-24798859 None:intergenic 35.0%
GTATAGGAATGGAATGAGTA+AGG + chr4_4:24798865-24798884 None:intergenic 35.0%
!! TTTTGGGTATGGTATAGGAA+TGG + chr4_4:24798876-24798895 None:intergenic 35.0%
AGGTATTACACCGTTAATGA+AGG - chr4_4:24798997-24799016 Msa0675620:intron 35.0%
AGATGTTGGCAAACCAATTT+GGG - chr4_4:24799094-24799113 Msa0675620:intron 35.0%
ATGATTGTATCTCCCCAAAT+TGG + chr4_4:24799110-24799129 None:intergenic 35.0%
AGATACAATCATCGTTTGGT+AGG - chr4_4:24799118-24799137 Msa0675620:intron 35.0%
! AACATAGTCACTTTGTACTC+CGG - chr4_4:24799157-24799176 Msa0675620:intron 35.0%
! AGTTTTCTTCTCAATGCACA+AGG + chr4_4:24799250-24799269 None:intergenic 35.0%
TGCATTGAGAAGAAAACTTG+TGG - chr4_4:24799252-24799271 Msa0675620:intron 35.0%
AAACTTGTGGTTGTGTTCAA+AGG - chr4_4:24799265-24799284 Msa0675620:intron 35.0%
TGTATCTCATCCAATCGAAT+GGG + chr4_4:24799348-24799367 None:intergenic 35.0%
TAGAAATCAAAGAGGCTTTG+CGG - chr4_4:24799487-24799506 Msa0675620:intron 35.0%
AAATCAAAACCACACGTAGT+AGG - chr4_4:24799583-24799602 Msa0675620:intron 35.0%
!! GACTATTGATTCTCAACATC+CGG - chr4_4:24799623-24799642 Msa0675620:intron 35.0%
!!! GTTTGTGAAGATTTTTTCCG+TGG + chr4_4:24799663-24799682 None:intergenic 35.0%
!! TAACTTGTTGAAACCAAGCT+AGG + chr4_4:24799735-24799754 None:intergenic 35.0%
TGGCATGTAATACATAGGAT+TGG + chr4_4:24799766-24799785 None:intergenic 35.0%
AAGAAAGTCATGTTATGGTG+CGG - chr4_4:24799880-24799899 Msa0675620:intron 35.0%
! TTCAAGAGTTGAAAGAGCAT+AGG - chr4_4:24799913-24799932 Msa0675620:intron 35.0%
CATCCAAGATGTAGTTGTAA+CGG + chr4_4:24799971-24799990 None:intergenic 35.0%
! GCAAAGCTACTAGGATTTTT+GGG + chr4_4:24800005-24800024 None:intergenic 35.0%
! TGCAAAGCTACTAGGATTTT+TGG + chr4_4:24800006-24800025 None:intergenic 35.0%
TCGTTGCATCATGTTACAAT+AGG - chr4_4:24800066-24800085 Msa0675620:intron 35.0%
TCTAAGTGGGAAAAAAGTCT+CGG + chr4_4:24800128-24800147 None:intergenic 35.0%
!!! AGGCAAATCATGTTGCTTTT+CGG + chr4_4:24800169-24800188 None:intergenic 35.0%
! AAAGCAACATGATTTGCCTT+TGG - chr4_4:24800170-24800189 Msa0675620:intron 35.0%
! ATGATTTGGGATTAGACCAA+AGG + chr4_4:24800189-24800208 None:intergenic 35.0%
!!! TGATTTGTTGGCTTTTTTGG+TGG + chr4_4:24800374-24800393 None:intergenic 35.0%
!! GAAATGTGACACTTTTTGGT+CGG - chr4_4:24800488-24800507 Msa0675620:intron 35.0%
!!! TACGCGCTAACGTATTTTTT+TGG - chr4_4:24800533-24800552 Msa0675620:intron 35.0%
!! ATTGCTGGATGTTGTTGTTT+CGG - chr4_4:24800790-24800809 Msa0675620:intron 35.0%
GTAATTTCAAACGGCAATTC+CGG + chr4_4:24800827-24800846 None:intergenic 35.0%
! GAATTGCCGTTTGAAATTAC+AGG - chr4_4:24800827-24800846 Msa0675620:intron 35.0%
GTAAAACAGAACACATTTCC+TGG - chr4_4:24800849-24800868 Msa0675620:intron 35.0%
CGTCATTTACTTGTGTCAAT+AGG - chr4_4:24801008-24801027 Msa0675620:intron 35.0%
TTTCCCTAGAAAAAGCTACA+AGG - chr4_4:24801056-24801075 Msa0675620:intron 35.0%
TTCCCTAGAAAAAGCTACAA+GGG - chr4_4:24801057-24801076 Msa0675620:intron 35.0%
!! TTCCCTTGTAGCTTTTTCTA+GGG + chr4_4:24801062-24801081 None:intergenic 35.0%
!! TTTCCCTTGTAGCTTTTTCT+AGG + chr4_4:24801063-24801082 None:intergenic 35.0%
TTCCGATTCAGTCAAAATAG+GGG + chr4_4:24802360-24802379 None:intergenic 35.0%
!!! TTCCGAGTTTTAAAATAGGG+GGG + chr4_4:24801340-24801359 None:intergenic 35.0%
CGAAAAACATTAAATTGGGG+GGG + chr4_4:24802303-24802322 None:intergenic 35.0%
CCGAAAAACATTAAATTGGG+GGG + chr4_4:24802302-24802321 None:intergenic 35.0%
! CCCCCCAATTTAATGTTTTT+CGG - chr4_4:24801426-24801445 Msa0675620:intron 35.0%
! AATAAGATAATGTGGTGGAG+GGG + chr4_4:24801460-24801479 None:intergenic 35.0%
!!! TCTGAGTTTTAAAATAGGGG+GGG - chr4_4:24802272-24802291 Msa0675620:intron 35.0%
! CCCCCCAATTTAATGTTTTT+CGG + chr4_4:24801426-24801445 None:intergenic 35.0%
CCGAAAAACATTAAATTGGG+GGG - chr4_4:24802302-24802321 Msa0675620:intron 35.0%
CGAAAAACATTAAATTGGGG+GGG - chr4_4:24802303-24802322 Msa0675620:intron 35.0%
!!! TCCGAGTTTTAAAATAGTGG+GGG - chr4_4:24802332-24802351 Msa0675620:intron 35.0%
!!! ACCCCCACTATTTTAAAACT+CGG + chr4_4:24802336-24802355 None:intergenic 35.0%
TTCCGATTCAGTCAAAATAG+GGG - chr4_4:24802360-24802379 Msa0675620:intron 35.0%
TTATTAAGAAAACGCTGAGG+TGG - chr4_4:24802410-24802429 Msa0675620:intron 35.0%
AGAGGGAAGAAGATAAAGAT+TGG + chr4_4:24802641-24802660 None:intergenic 35.0%
GATGAAGTCTTCAAGTCATT+AGG - chr4_4:24802977-24802996 Msa0675620:intron 35.0%
! GCATAAAGGTTCTGATTCAA+TGG + chr4_4:24803163-24803182 None:intergenic 35.0%
CATATTCCCTCTCTACTTAA+AGG - chr4_4:24803223-24803242 Msa0675620:intron 35.0%
TACCTTCCTTTAAGTAGAGA+GGG + chr4_4:24803232-24803251 None:intergenic 35.0%
ATACCTTCCTTTAAGTAGAG+AGG + chr4_4:24803233-24803252 None:intergenic 35.0%
AAGACATTGCAACGAATGAT+GGG + chr4_4:24803263-24803282 None:intergenic 35.0%
! GAAGGAAATAATTTGGGATG+TGG + chr4_4:24803293-24803312 None:intergenic 35.0%
ATGAAGAAGAGAGTGATTGA+AGG + chr4_4:24803311-24803330 None:intergenic 35.0%
! TAGTTTGTCTCTGTAACGTT+GGG - chr4_4:24803404-24803423 Msa0675620:intron 35.0%
GGCACATATAATTCATTTGG+TGG - chr4_4:24803425-24803444 Msa0675620:intron 35.0%
!!! AATTCATTTGGTGGTTTTGG+AGG - chr4_4:24803434-24803453 Msa0675620:intron 35.0%
! GTCTTTTTCCTTTCCATGTA+AGG - chr4_4:24803487-24803506 Msa0675620:intron 35.0%
! TTTTTCCTTTCCATGTAAGG+TGG - chr4_4:24803490-24803509 Msa0675620:intron 35.0%
! TTTTCCTTTCCATGTAAGGT+GGG - chr4_4:24803491-24803510 Msa0675620:intron 35.0%
!! TTTAGTGTGGATGGGTTAAA+TGG - chr4_4:24803594-24803613 Msa0675620:intron 35.0%
!! TTAGTGTGGATGGGTTAAAT+GGG - chr4_4:24803595-24803614 Msa0675620:intron 35.0%
CGAATCATAGATACCCTTAT+AGG + chr4_4:24803658-24803677 None:intergenic 35.0%
TTCGTTTCCTTATGTTAACG+AGG - chr4_4:24803674-24803693 Msa0675620:intron 35.0%
CTGCATTCTCTATAAAGTCA+AGG - chr4_4:24803853-24803872 Msa0675620:intron 35.0%
CATATTTCTTGCATGCCTTA+AGG - chr4_4:24803903-24803922 Msa0675620:intron 35.0%
! ATTCGGGTTTGTGATTGTTA+TGG - chr4_4:24803977-24803996 Msa0675620:intron 35.0%
CTAATACTTTCTTCCATCTC+TGG - chr4_4:24804014-24804033 Msa0675620:intron 35.0%
CTGGTTAATGATGCAAATTC+TGG - chr4_4:24804347-24804366 Msa0675620:intron 35.0%
TTCTGGATCCATTCTTAAGT+TGG - chr4_4:24804364-24804383 Msa0675620:intron 35.0%
TCTGGATCCATTCTTAAGTT+GGG - chr4_4:24804365-24804384 Msa0675620:intron 35.0%
! ATGTTATATATTGGCGGATG+AGG - chr4_4:24804461-24804480 Msa0675620:intron 35.0%
ATTTAACCTTTCCATATCGG+TGG + chr4_4:24804493-24804512 None:intergenic 35.0%
TTTGTCATAGGGTGATGAAA+AGG - chr4_4:24804602-24804621 Msa0675620:intron 35.0%
GTGATGAAAAGGTTGAACAA+TGG - chr4_4:24804613-24804632 Msa0675620:intron 35.0%
TTCGTCAAAGCTATTACCTT+GGG - chr4_4:24804656-24804675 Msa0675620:intron 35.0%
GTGAGATGGAAAAACATGTT+TGG - chr4_4:24804681-24804700 Msa0675620:intron 35.0%
ACTAGAACCAAGATGATGTT+TGG - chr4_4:24804732-24804751 Msa0675620:intron 35.0%
CTAGAACCAAGATGATGTTT+GGG - chr4_4:24804733-24804752 Msa0675620:intron 35.0%
TAACAACCGGTAATGATTTC+GGG - chr4_4:24804839-24804858 Msa0675620:intron 35.0%
AAATGTCCCGAAATCATTAC+CGG + chr4_4:24804848-24804867 None:intergenic 35.0%
TGATTTCGGGACATTTGTAA+TGG - chr4_4:24804852-24804871 Msa0675620:intron 35.0%
ACCTTAGAACTGCTATGTTT+CGG + chr4_4:24804911-24804930 None:intergenic 35.0%
CACGAAGAAATCATGCAAAT+CGG - chr4_4:24804945-24804964 Msa0675620:intron 35.0%
GCTTCCATATAAGATGACTT+TGG + chr4_4:24805065-24805084 None:intergenic 35.0%
TGAAGTTAGGCTAAAAAACC+AGG + chr4_4:24805286-24805305 None:intergenic 35.0%
!!! TGGTTTTTTAGCCTAACTTC+AGG - chr4_4:24805285-24805304 Msa0675620:intron 35.0%
!!! TTTTTTAGCCTAACTTCAGG+TGG - chr4_4:24805288-24805307 Msa0675620:intron 35.0%
! TGAAAGGTTTGGTATTTACG+GGG + chr4_4:24805321-24805340 None:intergenic 35.0%
GCCATTATGAATGAAAGGTT+TGG + chr4_4:24805332-24805351 None:intergenic 35.0%
AATGAGTAACGCGAATTGTT+TGG - chr4_4:24805512-24805531 Msa0675620:intron 35.0%
! AGTAGAGTATCATATCCACA+TGG + chr4_4:24805551-24805570 None:intergenic 35.0%
TCGAAAATATCAACAATCCC+CGG + chr4_4:24805646-24805665 None:intergenic 35.0%
GTAAACTATGTGTATATGGC+TGG + chr4_4:24805873-24805892 None:intergenic 35.0%
CCTGGTAAACTATGTGTATA+TGG + chr4_4:24805877-24805896 None:intergenic 35.0%
CCATATACACATAGTTTACC+AGG - chr4_4:24805874-24805893 Msa0675620:intron 35.0%
!! GTCAAGTTTGCTAAAGTCTT+AGG - chr4_4:24806110-24806129 Msa0675620:intron 35.0%
!! CAAGTTTGCTAAAGTCTTAG+GGG - chr4_4:24806112-24806131 Msa0675620:intron 35.0%
!!! TAAGTTCTCCCTTATTTTGG+TGG - chr4_4:24806277-24806296 Msa0675620:intron 35.0%
GCAATAGCAAGAAACATTGT+TGG - chr4_4:24806335-24806354 Msa0675620:CDS 35.0%
TGCAAGCACACTAATTGAAT+GGG + chr4_4:24806392-24806411 None:intergenic 35.0%
ATGCAAGCACACTAATTGAA+TGG + chr4_4:24806393-24806412 None:intergenic 35.0%
CACTTACTTGCATACATGTC+AGG + chr4_4:24797994-24798013 None:intergenic 40.0%
CAAAGATAATTGTGGCAACG+TGG + chr4_4:24798240-24798259 None:intergenic 40.0%
TAAACTACCGTAATGCGAGA+TGG - chr4_4:24798612-24798631 Msa0675620:intron 40.0%
GGTCATTTACTTGTGGCAAT+TGG + chr4_4:24798702-24798721 None:intergenic 40.0%
TGAATGAATAGCTGAGGTAG+GGG + chr4_4:24798839-24798858 None:intergenic 40.0%
GATGAATGAATAGCTGAGGT+AGG + chr4_4:24798841-24798860 None:intergenic 40.0%
AGGTGATGAATGAATAGCTG+AGG + chr4_4:24798845-24798864 None:intergenic 40.0%
! ATCGATCAGCAATGATTTGG+AGG + chr4_4:24798939-24798958 None:intergenic 40.0%
GCAATCGATCAGCAATGATT+TGG + chr4_4:24798942-24798961 None:intergenic 40.0%
CGCAAAATGCATCAAAGAAC+AGG - chr4_4:24798977-24798996 Msa0675620:intron 40.0%
ACCATGAGCTCCTTCATTAA+CGG + chr4_4:24799010-24799029 None:intergenic 40.0%
GAATATTTGTCCACCTCCAA+GGG - chr4_4:24799039-24799058 Msa0675620:intron 40.0%
GAGATGTTGGCAAACCAATT+TGG - chr4_4:24799093-24799112 Msa0675620:intron 40.0%
GATGTTGGCAAACCAATTTG+GGG - chr4_4:24799095-24799114 Msa0675620:intron 40.0%
!! ATCGTTTGGTAGGAGTGTTA+CGG - chr4_4:24799128-24799147 Msa0675620:intron 40.0%
! ACATAGTCACTTTGTACTCC+GGG - chr4_4:24799158-24799177 Msa0675620:intron 40.0%
ATAGCAATGAAGCATGCACA+AGG + chr4_4:24799306-24799325 None:intergenic 40.0%
GTGTATCTCATCCAATCGAA+TGG + chr4_4:24799349-24799368 None:intergenic 40.0%
!! TGAAGATTTGTTTTCGGTCG+CGG - chr4_4:24799410-24799429 Msa0675620:intron 40.0%
! GAACTCTTTGAAGACGTTCT+TGG + chr4_4:24799452-24799471 None:intergenic 40.0%
!!! GATTTTTTTGGGAGCTCCTT+TGG + chr4_4:24799568-24799587 None:intergenic 40.0%
!! AAAAGAAAAGGTGCTCGCAT+TGG - chr4_4:24799684-24799703 Msa0675620:intron 40.0%
ACCATACATTGAGAGAGTTG+TGG - chr4_4:24799797-24799816 Msa0675620:intron 40.0%
TCCACAACTCTCTCAATGTA+TGG + chr4_4:24799801-24799820 None:intergenic 40.0%
GAGAGAGTTGTGGATGTTAT+TGG - chr4_4:24799807-24799826 Msa0675620:intron 40.0%
GTTGTGGATGTTATTGGTGA+CGG - chr4_4:24799813-24799832 Msa0675620:intron 40.0%
! TTGTGGATGTTATTGGTGAC+GGG - chr4_4:24799814-24799833 Msa0675620:intron 40.0%
GACGCAAGAAAGTCATGTTA+TGG - chr4_4:24799875-24799894 Msa0675620:intron 40.0%
CGTTACAACTACATCTTGGA+TGG - chr4_4:24799969-24799988 Msa0675620:intron 40.0%
!! AAGCTACTAGGATTTTTGGG+AGG + chr4_4:24800002-24800021 None:intergenic 40.0%
TGCATCATGTTACAATAGGC+CGG - chr4_4:24800070-24800089 Msa0675620:intron 40.0%
!!! GAGACTTTTTTCCCACTTAG+AGG - chr4_4:24800127-24800146 Msa0675620:intron 40.0%
!!! ATGTTGCTTTTCGGGTTAAC+CGG + chr4_4:24800160-24800179 None:intergenic 40.0%
!!! GGCAAATCATGTTGCTTTTC+GGG + chr4_4:24800168-24800187 None:intergenic 40.0%
GAGAAATCACAGAAGTGAAG+AGG - chr4_4:24800265-24800284 Msa0675620:intron 40.0%
AAATCACAGAAGTGAAGAGG+CGG - chr4_4:24800268-24800287 Msa0675620:intron 40.0%
AACATGGGAGGATGAATTCT+TGG - chr4_4:24800292-24800311 Msa0675620:intron 40.0%
! CGATCATTTTCGAACACTCA+TGG - chr4_4:24800322-24800341 Msa0675620:intron 40.0%
CACCGAATTTGAAGATGTTC+TGG - chr4_4:24800436-24800455 Msa0675620:intron 40.0%
!!! GTCGGTGTTAATCCGTTTTT+TGG - chr4_4:24800506-24800525 Msa0675620:intron 40.0%
AGCGCGTATCAACCAAAAAA+CGG + chr4_4:24800521-24800540 None:intergenic 40.0%
! ACGTTAACGCATTATCGGTT+TGG - chr4_4:24800719-24800738 Msa0675620:intron 40.0%
! TGTTTCGGTTTGATTTCCTC+CGG - chr4_4:24800805-24800824 Msa0675620:intron 40.0%
! AAATGACGCTTTTACCCTCA+GGG + chr4_4:24800996-24801015 None:intergenic 40.0%
! TAAATGACGCTTTTACCCTC+AGG + chr4_4:24800997-24801016 None:intergenic 40.0%
TCCGATTCAGTCAAAATAGG+GGG + chr4_4:24802361-24802380 None:intergenic 40.0%
!!! ACCCCCCCTATTTTAAAACT+CGG - chr4_4:24801335-24801354 Msa0675620:intron 40.0%
!!! TCCGAGTTTTAAAATAGGGG+GGG + chr4_4:24801339-24801358 None:intergenic 40.0%
! ATAAGATAATGTGGTGGAGG+GGG + chr4_4:24801459-24801478 None:intergenic 40.0%
TCCGATTCAGTCAAAATAGG+GGG - chr4_4:24802361-24802380 Msa0675620:intron 40.0%
!!! TGGTAAGGTTGGTGTTTTCT+GGG + chr4_4:24802621-24802640 None:intergenic 40.0%
!!! TTGGTAAGGTTGGTGTTTTC+TGG + chr4_4:24802622-24802641 None:intergenic 40.0%
AGTCAGAAGAACGTCACATT+TGG + chr4_4:24803009-24803028 None:intergenic 40.0%
ATCTCACCTCGTAAATGATG+TGG - chr4_4:24803063-24803082 Msa0675620:intron 40.0%
AGAAGTCCACATCATTTACG+AGG + chr4_4:24803072-24803091 None:intergenic 40.0%
TGATGTGGACTTCTCTGTAA+AGG - chr4_4:24803078-24803097 Msa0675620:intron 40.0%
! TTCTCTGTAAAGGTGCAATG+AGG - chr4_4:24803088-24803107 Msa0675620:intron 40.0%
GCAATGAGGATGGATAACTT+TGG - chr4_4:24803102-24803121 Msa0675620:intron 40.0%
TGGATAACTTTGGATTCTCG+AGG - chr4_4:24803112-24803131 Msa0675620:intron 40.0%
ATAACTTTGGATTCTCGAGG+CGG - chr4_4:24803115-24803134 Msa0675620:intron 40.0%
TTCCCTCTCTACTTAAAGGA+AGG - chr4_4:24803227-24803246 Msa0675620:intron 40.0%
GAAGACATTGCAACGAATGA+TGG + chr4_4:24803264-24803283 None:intergenic 40.0%
CATTTATGATCAGAAGGGGA+GGG + chr4_4:24803357-24803376 None:intergenic 40.0%
! CTAGTTTGTCTCTGTAACGT+TGG - chr4_4:24803403-24803422 Msa0675620:intron 40.0%
CTCTGGTTAAAAGTGAGTAG+CGG - chr4_4:24803515-24803534 Msa0675620:intron 40.0%
AAAATGCCTTCTTCAAACCG+TGG + chr4_4:24803800-24803819 None:intergenic 40.0%
TCAAGGTAGGCATTCCATTT+AGG - chr4_4:24803870-24803889 Msa0675620:intron 40.0%
ACCTAATTATTGGGGACTCA+TGG - chr4_4:24803946-24803965 Msa0675620:intron 40.0%
ACCATGAGTCCCCAATAATT+AGG + chr4_4:24803950-24803969 None:intergenic 40.0%
TAATTATTGGGGACTCATGG+TGG - chr4_4:24803949-24803968 Msa0675620:intron 40.0%
!! AGAAAGTATTAGTTCGGACC+TGG + chr4_4:24804006-24804025 None:intergenic 40.0%
TTTGCATATCTCACCAGAGA+TGG + chr4_4:24804030-24804049 None:intergenic 40.0%
AAAATTTAGAGGTTGCTGGG+AGG + chr4_4:24804085-24804104 None:intergenic 40.0%
AGTCCTCAGCATTGTACAAT+CGG + chr4_4:24804161-24804180 None:intergenic 40.0%
TGATTCAGACGTGCTAGAAT+TGG + chr4_4:24804219-24804238 None:intergenic 40.0%
!! ATCCATTCTTAAGTTGGGTG+TGG - chr4_4:24804370-24804389 Msa0675620:intron 40.0%
ATAGTTTAGCCCCAAAAGAG+AGG + chr4_4:24804424-24804443 None:intergenic 40.0%
! AGTTTTCCACCGATATGGAA+AGG - chr4_4:24804484-24804503 Msa0675620:intron 40.0%
CTTTGACGAAGATCCATCAA+TGG + chr4_4:24804646-24804665 None:intergenic 40.0%
CTTCGTCAAAGCTATTACCT+TGG - chr4_4:24804655-24804674 Msa0675620:intron 40.0%
TTGGGATAACCATGCTTTGA+AGG - chr4_4:24804700-24804719 Msa0675620:intron 40.0%
TCACTTCCCAAACATCATCT+TGG + chr4_4:24804742-24804761 None:intergenic 40.0%
CCTTAGAACTGCTATGTTTC+GGG + chr4_4:24804910-24804929 None:intergenic 40.0%
AGCAAGACATCTGAAGACTT+TGG - chr4_4:24804971-24804990 Msa0675620:intron 40.0%
GCAAGACATCTGAAGACTTT+GGG - chr4_4:24804972-24804991 Msa0675620:intron 40.0%
GCCTCAAAAGACGTTACAAA+GGG - chr4_4:24805020-24805039 Msa0675620:intron 40.0%
! TCCCTTTGTAACGTCTTTTG+AGG + chr4_4:24805024-24805043 None:intergenic 40.0%
TATGGAAGCAAACACCCAAA+AGG - chr4_4:24805076-24805095 Msa0675620:intron 40.0%
GGTTGAAACAACAATCCATG+TGG - chr4_4:24805533-24805552 Msa0675620:intron 40.0%
CAACTATACTCTGATACACG+TGG - chr4_4:24806041-24806060 Msa0675620:intron 40.0%
AACTTGACGAATGAAACTGG+AGG + chr4_4:24806098-24806117 None:intergenic 40.0%
GCAAACTTGACGAATGAAAC+TGG + chr4_4:24806101-24806120 None:intergenic 40.0%
AAGCACACTAATTGAATGGG+TGG + chr4_4:24806389-24806408 None:intergenic 40.0%
CTCTCTTACATCGTTGATCT+CGG + chr4_4:24806536-24806555 None:intergenic 40.0%
!! TCGAACTTCATTGACTTCAG+CGG + chr4_4:24806568-24806587 None:intergenic 40.0%
CAAAGATAATTGTGGCAACG+TGG + chr4_4:24798240-24798259 None:intergenic 40.0%
CGCAAGCACACAAATGGAAT+GGG + chr4_4:24798033-24798052 None:intergenic 45.0%
ACGCAAGCACACAAATGGAA+TGG + chr4_4:24798034-24798053 None:intergenic 45.0%
GCAAAACGCAAGCACACAAA+TGG + chr4_4:24798039-24798058 None:intergenic 45.0%
TCTCTTACATCGCTGATCTG+GGG + chr4_4:24798121-24798140 None:intergenic 45.0%
CTCTCTTACATCGCTGATCT+GGG + chr4_4:24798122-24798141 None:intergenic 45.0%
AACCGTTTGATCTATCACGC+AGG - chr4_4:24798543-24798562 Msa0675620:intron 45.0%
GACCTGCGTGATAGATCAAA+CGG + chr4_4:24798548-24798567 None:intergenic 45.0%
AATGACCTTAATGCCCCTGA+CGG - chr4_4:24798715-24798734 Msa0675620:intron 45.0%
ACCGTTAATGAAGGAGCTCA+TGG - chr4_4:24799006-24799025 Msa0675620:intron 45.0%
TAATGAAGGAGCTCATGGTG+TGG - chr4_4:24799011-24799030 Msa0675620:intron 45.0%
GGAATATTTGTCCACCTCCA+AGG - chr4_4:24799038-24799057 Msa0675620:intron 45.0%
ACAAGTACCCAAATCACCCT+TGG + chr4_4:24799058-24799077 None:intergenic 45.0%
! AGGGTGATTTGGGTACTTGT+TGG - chr4_4:24799058-24799077 Msa0675620:intron 45.0%
GGGGAGATACAATCATCGTT+TGG - chr4_4:24799114-24799133 Msa0675620:intron 45.0%
TGTGTTCAAAGGACGTCGTA+TGG - chr4_4:24799276-24799295 Msa0675620:intron 45.0%
CAATGAAGCATGCACAAGGT+AGG + chr4_4:24799302-24799321 None:intergenic 45.0%
!! ATCGAATGGGCTTGTTGTGA+CGG + chr4_4:24799335-24799354 None:intergenic 45.0%
TCACAACAAGCCCATTCGAT+TGG - chr4_4:24799335-24799354 Msa0675620:intron 45.0%
TGGATGAGATACACCCACAT+TGG - chr4_4:24799355-24799374 Msa0675620:intron 45.0%
TTTGCGGTTGTTAGCGTTTC+TGG - chr4_4:24799503-24799522 Msa0675620:intron 45.0%
TAGTAGGATCCCATCTTCGT+GGG - chr4_4:24799599-24799618 Msa0675620:intron 45.0%
CAATAGTCTCCCACGAAGAT+GGG + chr4_4:24799611-24799630 None:intergenic 45.0%
TCAATAGTCTCCCACGAAGA+TGG + chr4_4:24799612-24799631 None:intergenic 45.0%
CGTGGTGAAGAATGACTTTC+CGG + chr4_4:24799645-24799664 None:intergenic 45.0%
CGGAAAGTCATTCTTCACCA+CGG - chr4_4:24799643-24799662 Msa0675620:intron 45.0%
GTTGAAACCAAGCTAGGCTT+AGG + chr4_4:24799729-24799748 None:intergenic 45.0%
!! TTATTGGTGACGGGCATTGT+GGG - chr4_4:24799823-24799842 Msa0675620:intron 45.0%
! TTGTGGGTTTAGGGCTATAG+CGG - chr4_4:24799839-24799858 Msa0675620:intron 45.0%
ACTTTCTTGCGTCAAACCCA+AGG + chr4_4:24799868-24799887 None:intergenic 45.0%
CATTGAGATATATGCGAGCG+AGG - chr4_4:24799944-24799963 Msa0675620:intron 45.0%
GGACCGTTACAACTACATCT+TGG - chr4_4:24799965-24799984 Msa0675620:intron 45.0%
AATGTCAACCATTTGTCGGG+AGG + chr4_4:24800029-24800048 None:intergenic 45.0%
GGCAATGTCAACCATTTGTC+GGG + chr4_4:24800032-24800051 None:intergenic 45.0%
CGGCAATGTCAACCATTTGT+CGG + chr4_4:24800033-24800052 None:intergenic 45.0%
CGACAAATGGTTGACATTGC+CGG - chr4_4:24800031-24800050 Msa0675620:intron 45.0%
ATGGTTGACATTGCCGGATA+TGG - chr4_4:24800037-24800056 Msa0675620:intron 45.0%
TGGTTGACATTGCCGGATAT+GGG - chr4_4:24800038-24800057 Msa0675620:intron 45.0%
CCATGTAGCATCTCTAACAC+CGG + chr4_4:24800092-24800111 None:intergenic 45.0%
CATTGAGCTCAAAGAGAGAC+CGG - chr4_4:24800346-24800365 Msa0675620:intron 45.0%
!!! GTTGGCTTTTTTGGTGGAAC+CGG + chr4_4:24800368-24800387 None:intergenic 45.0%
ATTTCAAACGGCAATTCCGG+AGG + chr4_4:24800824-24800843 None:intergenic 45.0%
TTAAGTGTTAACTGCCCCTG+AGG - chr4_4:24800978-24800997 Msa0675620:intron 45.0%
TAAGTGTTAACTGCCCCTGA+GGG - chr4_4:24800979-24800998 Msa0675620:intron 45.0%
! AATGACGCTTTTACCCTCAG+GGG + chr4_4:24800995-24801014 None:intergenic 45.0%
CGATTCAGTCAAAATAGGGG+GGG + chr4_4:24802363-24802382 None:intergenic 45.0%
CCGATTCAGTCAAAATAGGG+GGG + chr4_4:24802362-24802381 None:intergenic 45.0%
!!! CCCCCCTATTTTGACTGAAT+CGG - chr4_4:24801306-24801325 Msa0675620:intron 45.0%
!!! CCCCCCTATTTTGACTGAAT+CGG + chr4_4:24801306-24801325 None:intergenic 45.0%
CCGATTCAGTCAAAATAGGG+GGG - chr4_4:24802362-24802381 Msa0675620:intron 45.0%
CGATTCAGTCAAAATAGGGG+GGG - chr4_4:24802363-24802382 Msa0675620:intron 45.0%
AATCCTACGTGTCATACAGG+AGG + chr4_4:24802916-24802935 None:intergenic 45.0%
CACAATCCTACGTGTCATAC+AGG + chr4_4:24802919-24802938 None:intergenic 45.0%
CTCGTTATGCAAGTGTTCCA+TGG - chr4_4:24803027-24803046 Msa0675620:intron 45.0%
! TGTTCCATGGCGTTTGGTTT+AGG - chr4_4:24803040-24803059 Msa0675620:intron 45.0%
AGATCCTAAACCAAACGCCA+TGG + chr4_4:24803047-24803066 None:intergenic 45.0%
! CTGTAAAGGTGCAATGAGGA+TGG - chr4_4:24803092-24803111 Msa0675620:intron 45.0%
AATGGTCTCAGCTGTTTACC+CGG + chr4_4:24803145-24803164 None:intergenic 45.0%
! TTGCAACGAATGATGGGAGA+AGG + chr4_4:24803257-24803276 None:intergenic 45.0%
CCATTTATGATCAGAAGGGG+AGG + chr4_4:24803358-24803377 None:intergenic 45.0%
CCTCCCCTTCTGATCATAAA+TGG - chr4_4:24803355-24803374 Msa0675620:intron 45.0%
!! TGTGGATGGGTTAAATGGGT+CGG - chr4_4:24803599-24803618 Msa0675620:intron 45.0%
CTGGGATCAGAGAAAATGGA+GGG + chr4_4:24803713-24803732 None:intergenic 45.0%
ACTGGGATCAGAGAAAATGG+AGG + chr4_4:24803714-24803733 None:intergenic 45.0%
! TCCATTTTCTCTGATCCCAG+TGG - chr4_4:24803713-24803732 Msa0675620:intron 45.0%
! CCATTTTCTCTGATCCCAGT+GGG - chr4_4:24803714-24803733 Msa0675620:intron 45.0%
AGAGATCAATCACTCCCACT+GGG + chr4_4:24803731-24803750 None:intergenic 45.0%
AAGAGATCAATCACTCCCAC+TGG + chr4_4:24803732-24803751 None:intergenic 45.0%
TGGGAGTGATTGATCTCTTC+CGG - chr4_4:24803733-24803752 Msa0675620:intron 45.0%
GGAAAGTTCGTTAACAACGC+CGG + chr4_4:24803755-24803774 None:intergenic 45.0%
GACTCATGGTGGTCTTCATT+CGG - chr4_4:24803960-24803979 Msa0675620:intron 45.0%
ACTCATGGTGGTCTTCATTC+GGG - chr4_4:24803961-24803980 Msa0675620:intron 45.0%
TTGTGATTGTTATGGCGTCC+AGG - chr4_4:24803985-24804004 Msa0675620:intron 45.0%
TGTCCGATTGTACAATGCTG+AGG - chr4_4:24804155-24804174 Msa0675620:intron 45.0%
GATTGTACAATGCTGAGGAC+TGG - chr4_4:24804160-24804179 Msa0675620:intron 45.0%
TGGAGGACTATTTGTACCCA+AGG - chr4_4:24804180-24804199 Msa0675620:intron 45.0%
GGAGGACTATTTGTACCCAA+GGG - chr4_4:24804181-24804200 Msa0675620:intron 45.0%
! TGGTGCTAGAACTTTCCCTT+GGG + chr4_4:24804199-24804218 None:intergenic 45.0%
!! TTGGTGCTAGAACTTTCCCT+TGG + chr4_4:24804200-24804219 None:intergenic 45.0%
TGTGTCTATGAGAGGCTACT+AGG + chr4_4:24804307-24804326 None:intergenic 45.0%
TACTAGCGTGTGTCTATGAG+AGG + chr4_4:24804315-24804334 None:intergenic 45.0%
ATCATTAACCAGCGACCGTA+AGG + chr4_4:24804339-24804358 None:intergenic 45.0%
AGCCACACCCAACTTAAGAA+TGG + chr4_4:24804375-24804394 None:intergenic 45.0%
! TGAGGAGTTTTCCACCGATA+TGG - chr4_4:24804479-24804498 Msa0675620:intron 45.0%
! GGAAAGGTTAAATTCTGGGG+TGG - chr4_4:24804500-24804519 Msa0675620:intron 45.0%
!!! GTGGAGGAAGAGACCTTTTT+TGG - chr4_4:24804531-24804550 Msa0675620:intron 45.0%
! GTGAGAAGCTAGCCTCTATT+AGG - chr4_4:24804574-24804593 Msa0675620:intron 45.0%
CAATGGGAGAAGACCATTGA+TGG - chr4_4:24804630-24804649 Msa0675620:intron 45.0%
TATTACCTTGGGACGTGAGA+TGG - chr4_4:24804667-24804686 Msa0675620:intron 45.0%
! TTTTTCCATCTCACGTCCCA+AGG + chr4_4:24804675-24804694 None:intergenic 45.0%
!! TAACCATGCTTTGAAGGAGC+TGG - chr4_4:24804706-24804725 Msa0675620:intron 45.0%
CCCGAAACATAGCAGTTCTA+AGG - chr4_4:24804907-24804926 Msa0675620:intron 45.0%
GGCCTCAAAAGACGTTACAA+AGG - chr4_4:24805019-24805038 Msa0675620:intron 45.0%
! GCCCTGAGCATTGCAAAAAA+CGG - chr4_4:24805224-24805243 Msa0675620:intron 45.0%
!!! CCCGTTTTTTGCAATGCTCA+GGG + chr4_4:24805228-24805247 None:intergenic 45.0%
! CCCTGAGCATTGCAAAAAAC+GGG - chr4_4:24805225-24805244 Msa0675620:intron 45.0%
!!! TCCCGTTTTTTGCAATGCTC+AGG + chr4_4:24805229-24805248 None:intergenic 45.0%
GAGAGTTTCCACCTGAAGTT+AGG + chr4_4:24805299-24805318 None:intergenic 45.0%
ATGGCTCATTCAGAACGAAG+TGG - chr4_4:24805347-24805366 Msa0675620:intron 45.0%
TCAGAACGAAGTGGTTCAAG+AGG - chr4_4:24805356-24805375 Msa0675620:intron 45.0%
AACGAAGTGGTTCAAGAGGA+AGG - chr4_4:24805360-24805379 Msa0675620:intron 45.0%
! TACTCTAGAGACTTGGAGTG+AGG + chr4_4:24805422-24805441 None:intergenic 45.0%
! CAACGGTGCCAAAAACTTGA+TGG + chr4_4:24805623-24805642 None:intergenic 45.0%
ATATCAACAATCCCCGGCAA+CGG + chr4_4:24805640-24805659 None:intergenic 45.0%
AAAGTACAGGGTTGCTTACC+TGG + chr4_4:24805895-24805914 None:intergenic 45.0%
TTGAATGGGTGGTGTGATTG+AGG + chr4_4:24806378-24806397 None:intergenic 45.0%
CGAGATCAACGATGTAAGAG+AGG - chr4_4:24806534-24806553 Msa0675620:CDS 45.0%
TCAATGAAGTTCGAGTGCCT+AGG - chr4_4:24806574-24806593 Msa0675620:CDS 45.0%
CAATGAAGTTCGAGTGCCTA+GGG - chr4_4:24806575-24806594 Msa0675620:CDS 45.0%
!!! AAATAACTTTTTAAAAAAAA+TGG - chr4_4:24801529-24801548 Msa0675620:intron 5.0%
CCTCTCTTACATCGCTGATC+TGG + chr4_4:24798123-24798142 None:intergenic 50.0%
CCAGATCAGCGATGTAAGAG+AGG - chr4_4:24798120-24798139 Msa0675620:intron 50.0%
! TGGCAACGTGGATCGTTTTC+TGG + chr4_4:24798228-24798247 None:intergenic 50.0%
TGTGCTGCCATCTCGCATTA+CGG + chr4_4:24798622-24798641 None:intergenic 50.0%
!! AACTACCGTCAGGGGCATTA+AGG + chr4_4:24798723-24798742 None:intergenic 50.0%
CGGTAGTTAACTACCGTCAG+GGG + chr4_4:24798731-24798750 None:intergenic 50.0%
GCGGTAGTTAACTACCGTCA+GGG + chr4_4:24798732-24798751 None:intergenic 50.0%
AGCGGTAGTTAACTACCGTC+AGG + chr4_4:24798733-24798752 None:intergenic 50.0%
TGACGGTAGTTAACTACCGC+TGG - chr4_4:24798732-24798751 Msa0675620:intron 50.0%
ACTACCGCTGGAAGATCCAT+CGG - chr4_4:24798744-24798763 Msa0675620:intron 50.0%
TTTGGGGGGAAAGAAAGCAG+CGG + chr4_4:24798807-24798826 None:intergenic 50.0%
!!! TAGGGGTTTGCTGGTTTTGG+GGG + chr4_4:24798822-24798841 None:intergenic 50.0%
!!! GTAGGGGTTTGCTGGTTTTG+GGG + chr4_4:24798823-24798842 None:intergenic 50.0%
!!! GGTAGGGGTTTGCTGGTTTT+GGG + chr4_4:24798824-24798843 None:intergenic 50.0%
!!! AGGTAGGGGTTTGCTGGTTT+TGG + chr4_4:24798825-24798844 None:intergenic 50.0%
TCCACCTCCAAGGGTGATTT+GGG - chr4_4:24799048-24799067 Msa0675620:intron 50.0%
AGTACCCAAATCACCCTTGG+AGG + chr4_4:24799055-24799074 None:intergenic 50.0%
!! TGGTAGGAGTGTTACGGTCT+TGG - chr4_4:24799134-24799153 Msa0675620:intron 50.0%
! AGTCACTTTGTACTCCGGGT+TGG - chr4_4:24799162-24799181 Msa0675620:intron 50.0%
! GTCACTTTGTACTCCGGGTT+GGG - chr4_4:24799163-24799182 Msa0675620:intron 50.0%
TCACTTTGTACTCCGGGTTG+GGG - chr4_4:24799164-24799183 Msa0675620:intron 50.0%
! TTGTGGAAGAAGAGCGTGCT+AGG - chr4_4:24799220-24799239 Msa0675620:intron 50.0%
!! AGATTTGTTTTCGGTCGCGG+AGG - chr4_4:24799413-24799432 Msa0675620:intron 50.0%
TGGAGGTGGTGACAACAATG+TGG + chr4_4:24799532-24799551 None:intergenic 50.0%
GTTGTCACCACCTCCAAGAA+AGG - chr4_4:24799536-24799555 Msa0675620:intron 50.0%
TTGGTTGCCACCTTTCTTGG+AGG + chr4_4:24799549-24799568 None:intergenic 50.0%
CCTTTGGTTGCCACCTTTCT+TGG + chr4_4:24799552-24799571 None:intergenic 50.0%
CCAAGAAAGGTGGCAACCAA+AGG - chr4_4:24799549-24799568 Msa0675620:intron 50.0%
AGATGGGATCCTACTACGTG+TGG + chr4_4:24799595-24799614 None:intergenic 50.0%
GTAGTAGGATCCCATCTTCG+TGG - chr4_4:24799598-24799617 Msa0675620:intron 50.0%
! TGCTCGCATTGGCATTTCTC+CGG - chr4_4:24799695-24799714 Msa0675620:intron 50.0%
CATTGGCATTTCTCCGGTTC+TGG - chr4_4:24799701-24799720 Msa0675620:intron 50.0%
CTAGGCTTAGGAACCAGAAC+CGG + chr4_4:24799717-24799736 None:intergenic 50.0%
! TCTGGTTCCTAAGCCTAGCT+TGG - chr4_4:24799719-24799738 Msa0675620:intron 50.0%
!! GTTATTGGTGACGGGCATTG+TGG - chr4_4:24799822-24799841 Msa0675620:intron 50.0%
! TGACGGGCATTGTGGGTTTA+GGG - chr4_4:24799830-24799849 Msa0675620:intron 50.0%
GCAACGATGTGTCCCATATC+CGG + chr4_4:24800053-24800072 None:intergenic 50.0%
! CCGGTGTTAGAGATGCTACA+TGG - chr4_4:24800089-24800108 Msa0675620:intron 50.0%
!!! TTGCTTTTCGGGTTAACCGG+AGG + chr4_4:24800157-24800176 None:intergenic 50.0%
TCTGTGATTTCTCCACTCCG+TGG + chr4_4:24800258-24800277 None:intergenic 50.0%
AAGTGAAGAGGCGGCAACAT+GGG - chr4_4:24800277-24800296 Msa0675620:intron 50.0%
!! GTCTGCACTTGGTTTTTCCC+AGG + chr4_4:24800870-24800889 None:intergenic 50.0%
AAACCAAGTGCAGACTGCAC+TGG - chr4_4:24800875-24800894 Msa0675620:intron 50.0%
!! GACTGCACTGGTTCTGTAAC+TGG - chr4_4:24800887-24800906 Msa0675620:intron 50.0%
GGTTCTGTAACTGGTGTGAG+CGG - chr4_4:24800896-24800915 Msa0675620:intron 50.0%
ACTTGATGCTTCCCCTTTCG+CGG - chr4_4:24802879-24802898 Msa0675620:intron 50.0%
CAGAACAAACACCGCGAAAG+GGG + chr4_4:24802893-24802912 None:intergenic 50.0%
GCAGAACAAACACCGCGAAA+GGG + chr4_4:24802894-24802913 None:intergenic 50.0%
TGCAAGTGTTCCATGGCGTT+TGG - chr4_4:24803034-24803053 Msa0675620:intron 50.0%
GAGTCCCACCTTACATGGAA+AGG + chr4_4:24803498-24803517 None:intergenic 50.0%
TTCCATGTAAGGTGGGACTC+TGG - chr4_4:24803498-24803517 Msa0675620:intron 50.0%
AACCAGAGTCCCACCTTACA+TGG + chr4_4:24803503-24803522 None:intergenic 50.0%
GGGTCGGAAAGTTCCATATC+TGG - chr4_4:24803615-24803634 Msa0675620:intron 50.0%
CCCACTGGGATCAGAGAAAA+TGG + chr4_4:24803717-24803736 None:intergenic 50.0%
TAACGAACTTTCCGTCCTCG+TGG - chr4_4:24803762-24803781 Msa0675620:intron 50.0%
CTTTCCGTCCTCGTGGTATA+TGG - chr4_4:24803769-24803788 Msa0675620:intron 50.0%
GCAACCATATACCACGAGGA+CGG + chr4_4:24803776-24803795 None:intergenic 50.0%
TGGAGCAACCATATACCACG+AGG + chr4_4:24803780-24803799 None:intergenic 50.0%
CGTGGTATATGGTTGCTCCA+CGG - chr4_4:24803780-24803799 Msa0675620:intron 50.0%
GTTGCTCCACGGTTTGAAGA+AGG - chr4_4:24803791-24803810 Msa0675620:intron 50.0%
TGTACAATGCTGAGGACTGG+AGG - chr4_4:24804163-24804182 Msa0675620:intron 50.0%
! GACACACGCTAGTAGCCTTA+CGG - chr4_4:24804321-24804340 Msa0675620:intron 50.0%
GGGTGTGGCTTTCTGTCATA+TGG - chr4_4:24804385-24804404 Msa0675620:intron 50.0%
TCACCAGCTCCTTCAAAGCA+TGG + chr4_4:24804712-24804731 None:intergenic 50.0%
AGTGCAGAAAATGCACCCTC+GGG + chr4_4:24805177-24805196 None:intergenic 50.0%
GAGTGCAGAAAATGCACCCT+CGG + chr4_4:24805178-24805197 None:intergenic 50.0%
TCAAGAGGAAGGCAAGCACT+AGG - chr4_4:24805371-24805390 Msa0675620:intron 50.0%
GCAAGCACTAGGAGCTTCAA+GGG - chr4_4:24805382-24805401 Msa0675620:intron 50.0%
!!! CAAGTTTTTGGCACCGTTGC+CGG - chr4_4:24805624-24805643 Msa0675620:intron 50.0%
!!! AAGTTTTTGGCACCGTTGCC+GGG - chr4_4:24805625-24805644 Msa0675620:intron 50.0%
AGTTCGAGTGCCTAGGGAAA+AGG - chr4_4:24806581-24806600 Msa0675620:CDS 50.0%
!! GCATTTGCTGCCTTTTCCCT+AGG + chr4_4:24806594-24806613 None:intergenic 50.0%
ACTGCCGATGGATCTTCCAG+CGG + chr4_4:24798751-24798770 None:intergenic 55.0%
ATCGGCAGTTAACTGCCGCT+GGG - chr4_4:24798762-24798781 Msa0675620:intron 55.0%
AGCGGCAGTTAACAACCGCT+GGG + chr4_4:24798789-24798808 None:intergenic 55.0%
!!! AGGGGTTTGCTGGTTTTGGG+GGG + chr4_4:24798821-24798840 None:intergenic 55.0%
TAGCTGAGGTAGGGGTTTGC+TGG + chr4_4:24798831-24798850 None:intergenic 55.0%
AGGAGCTCATGGTGTGGTGA+AGG - chr4_4:24799017-24799036 Msa0675620:intron 55.0%
GTCCACCTCCAAGGGTGATT+TGG - chr4_4:24799047-24799066 Msa0675620:intron 55.0%
ACCCAAATCACCCTTGGAGG+TGG + chr4_4:24799052-24799071 None:intergenic 55.0%
! CACTTTGTACTCCGGGTTGG+GGG - chr4_4:24799165-24799184 Msa0675620:intron 55.0%
! ACTTTGTACTCCGGGTTGGG+GGG - chr4_4:24799166-24799185 Msa0675620:intron 55.0%
GTCACCACCTCCAAGAAAGG+TGG - chr4_4:24799539-24799558 Msa0675620:intron 55.0%
GTTGCCACCTTTCTTGGAGG+TGG + chr4_4:24799546-24799565 None:intergenic 55.0%
!! GTGACGGGCATTGTGGGTTT+AGG - chr4_4:24799829-24799848 Msa0675620:intron 55.0%
! TAGGGCTATAGCGGAAGCCT+TGG - chr4_4:24799848-24799867 Msa0675620:intron 55.0%
! AGGGCTATAGCGGAAGCCTT+GGG - chr4_4:24799849-24799868 Msa0675620:intron 55.0%
! TCGGGAGGTGCAAAGCTACT+AGG + chr4_4:24800014-24800033 None:intergenic 55.0%
GCTTTGCACCTCCCGACAAA+TGG - chr4_4:24800018-24800037 Msa0675620:intron 55.0%
TTTCTCCACTCCGTGGATGC+TGG + chr4_4:24800251-24800270 None:intergenic 55.0%
GAAGTGAAGAGGCGGCAACA+TGG - chr4_4:24800276-24800295 Msa0675620:intron 55.0%
GAACCAGTGCAGTCTGCACT+TGG + chr4_4:24800881-24800900 None:intergenic 55.0%
!! TAACAACCGCTGGCTTCCAG+CGG + chr4_4:24800932-24800951 None:intergenic 55.0%
AGCCAGCGGTTGTTAACTGC+CGG - chr4_4:24800937-24800956 Msa0675620:intron 55.0%
TATGTGTGCCTCCAGACGTG+TGG - chr4_4:24802845-24802864 Msa0675620:intron 55.0%
CGTTAAAGCCACACGTCTGG+AGG + chr4_4:24802856-24802875 None:intergenic 55.0%
ACGCGTTAAAGCCACACGTC+TGG + chr4_4:24802859-24802878 None:intergenic 55.0%
GGCAGAACAAACACCGCGAA+AGG + chr4_4:24802895-24802914 None:intergenic 55.0%
CTGCCTCCTGTATGACACGT+AGG - chr4_4:24802910-24802929 Msa0675620:intron 55.0%
ACTTTGGATTCTCGAGGCGG+TGG - chr4_4:24803118-24803137 Msa0675620:intron 55.0%
GGGAGGATAGAAAGCCATGG+TGG + chr4_4:24804068-24804087 None:intergenic 55.0%
GCTGGGAGGATAGAAAGCCA+TGG + chr4_4:24804071-24804090 None:intergenic 55.0%
!! GGTTAAATTCTGGGGTGGCG+AGG - chr4_4:24804505-24804524 Msa0675620:intron 55.0%
GTGCAGAAAATGCACCCTCG+GGG + chr4_4:24805176-24805195 None:intergenic 55.0%
GGCAAGCACTAGGAGCTTCA+AGG - chr4_4:24805381-24805400 Msa0675620:intron 55.0%
AGCACTAGGAGCTTCAAGGG+AGG - chr4_4:24805385-24805404 Msa0675620:intron 55.0%
!!! AGTTTTTGGCACCGTTGCCG+GGG - chr4_4:24805626-24805645 Msa0675620:intron 55.0%
CAGCGGCAGTTAACTGCCGA+TGG + chr4_4:24798763-24798782 None:intergenic 60.0%
CATCGGCAGTTAACTGCCGC+TGG - chr4_4:24798761-24798780 Msa0675620:intron 60.0%
TAACAACCGCTGGGTCCCAG+CGG + chr4_4:24798780-24798799 None:intergenic 60.0%
CAGCGGCAGTTAACAACCGC+TGG + chr4_4:24798790-24798809 None:intergenic 60.0%
! TGTTTTCGGTCGCGGAGGAG+TGG - chr4_4:24799418-24799437 Msa0675620:intron 60.0%
CCGGAGGTCGTCCTCTAAGT+GGG + chr4_4:24800141-24800160 None:intergenic 60.0%
CCCACTTAGAGGACGACCTC+CGG - chr4_4:24800138-24800157 Msa0675620:intron 60.0%
ACCGGAGGTCGTCCTCTAAG+TGG + chr4_4:24800142-24800161 None:intergenic 60.0%
CCGTGGATGCTGGAGGTAGT+GGG + chr4_4:24800241-24800260 None:intergenic 60.0%
CCCACTACCTCCAGCATCCA+CGG - chr4_4:24800238-24800257 Msa0675620:intron 60.0%
TCCGTGGATGCTGGAGGTAG+TGG + chr4_4:24800242-24800261 None:intergenic 60.0%
TACCTCCAGCATCCACGGAG+TGG - chr4_4:24800243-24800262 Msa0675620:intron 60.0%
TGAAGAGGCGGCAACATGGG+AGG - chr4_4:24800280-24800299 Msa0675620:intron 60.0%
TAACTGCCGCTGGAAGCCAG+CGG - chr4_4:24800923-24800942 Msa0675620:intron 60.0%
! ACTGCCGGCGCTTTAAGCAG+CGG - chr4_4:24800952-24800971 Msa0675620:intron 60.0%
ACAGCCGCTGCTTAAAGCGC+CGG + chr4_4:24800959-24800978 None:intergenic 60.0%
! GCTAGTAGCCTTACGGTCGC+TGG - chr4_4:24804328-24804347 Msa0675620:intron 60.0%
! AGGCGCATGAGAGTGCGTAC+CGG + chr4_4:24805125-24805144 None:intergenic 60.0%
ACTCTCATGCGCCTCGAGCA+TGG - chr4_4:24805131-24805150 Msa0675620:intron 60.0%
AGGCACATGGACCATGCTCG+AGG + chr4_4:24805145-24805164 None:intergenic 60.0%
TAACTGCCGCTGGGACCCAG+CGG - chr4_4:24798771-24798790 Msa0675620:intron 65.0%
AGACACGTGACCCCCCAACC+CGG + chr4_4:24799179-24799198 None:intergenic 65.0%
CTCCACTCCGTGGATGCTGG+AGG + chr4_4:24800248-24800267 None:intergenic 65.0%
GAGCGGCAGTTAACTGCCGC+TGG - chr4_4:24800913-24800932 Msa0675620:intron 65.0%
CGCCGGCAGTTAACAACCGC+TGG + chr4_4:24800942-24800961 None:intergenic 65.0%
GGATTCTCGAGGCGGTGGTC+CGG - chr4_4:24803123-24803142 Msa0675620:intron 65.0%
GATTCTCGAGGCGGTGGTCC+GGG - chr4_4:24803124-24803143 Msa0675620:intron 65.0%
! GATCAGAAGGGGAGGGTGCG+CGG + chr4_4:24803350-24803369 None:intergenic 65.0%
!! TTCTGGGGTGGCGAGGCTAG+TGG - chr4_4:24804512-24804531 Msa0675620:intron 65.0%
! CGGGGCATTCTCGAGGCACA+TGG + chr4_4:24805158-24805177 None:intergenic 65.0%
TGTGCCTCGAGAATGCCCCG+AGG - chr4_4:24805158-24805177 Msa0675620:intron 65.0%
GTGCCTCGAGAATGCCCCGA+GGG - chr4_4:24805159-24805178 Msa0675620:intron 65.0%
CTGCACTCTCATGCGCCTCG+AGG - chr4_4:24805190-24805209 Msa0675620:intron 65.0%
CTCTCATGCGCCTCGAGGAG+AGG - chr4_4:24805195-24805214 Msa0675620:intron 65.0%
! AAGGGGAGGGTGCGCGGTCT+TGG + chr4_4:24803344-24803363 None:intergenic 70.0%
TGGGGTGGCGAGGCTAGTGG+AGG - chr4_4:24804515-24804534 Msa0675620:intron 70.0%
! GCACCCTCGGGGCATTCTCG+AGG + chr4_4:24805165-24805184 None:intergenic 70.0%
GGGCGCATAGCCTCTCCTCG+AGG + chr4_4:24805208-24805227 None:intergenic 70.0%
TCGGTCGCGGAGGAGTGGCG+TGG - chr4_4:24799423-24799442 Msa0675620:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 24797898 24806638 24797898 ID=Msa0675620;Name=Msa0675620
chr4_4 mRNA 24797898 24806638 24797898 ID=Msa0675620-mRNA-1;Parent=Msa0675620;Name=Msa0675620-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0.5|0.66|3|0|134
chr4_4 exon 24806530 24806638 24806530 ID=Msa0675620-mRNA-1:exon:6791;Parent=Msa0675620-mRNA-1
chr4_4 exon 24806296 24806448 24806296 ID=Msa0675620-mRNA-1:exon:6790;Parent=Msa0675620-mRNA-1
chr4_4 exon 24797898 24798040 24797898 ID=Msa0675620-mRNA-1:exon:6789;Parent=Msa0675620-mRNA-1
chr4_4 CDS 24806530 24806638 24806530 ID=Msa0675620-mRNA-1:cds;Parent=Msa0675620-mRNA-1
chr4_4 CDS 24806296 24806448 24806296 ID=Msa0675620-mRNA-1:cds;Parent=Msa0675620-mRNA-1
chr4_4 CDS 24797898 24798040 24797898 ID=Msa0675620-mRNA-1:cds;Parent=Msa0675620-mRNA-1
Gene Sequence

>Msa0675620

ATGGTTTCTACGAATTGTTCTCTTATTTGTGTGGTTCTCTTTTTGTGTACAATGAGTTTCTCTACTAAAGCAACAAGGAACATTCTTGGTGCTCCTGACATGTATGCAAATGAAATCCATAAGAATAGAAAGCTACTTGCCCCAGATCAGCGATGTAAGAGAGGAAGAATGACTGTTGAACTTAATCAAACTCCCGTTGTACTTAATAAAACTGGTTCTGTATTTAATAAAACTCACGAGGAAAAGCCAGAAAACGATCCACTTTCAGATGAAATGGGTCAGAATAGAAAACTACTTAACCGAGATCAACGATGTAAGAGAGGAAGAGTTACCGCTGAAGTCAATGAAGTTCGAGTGCCTAGGGAAAAGGCAGCAAATGCTCCACGTTGCCACAATTATCTTTGA

Protein sequence

>Msa0675620

MVSTNCSLICVVLFLCTMSFSTKATRNILGAPDMYANEIHKNRKLLAPDQRCKRGRMTVELNQTPVVLNKTGSVFNKTHEEKPENDPLSDEMGQNRKLLNRDQRCKRGRVTAEVNEVRVPREKAANAPRCHNYL*