AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1062070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1062070 MtrunA17_Chr7g0240531 92.411 224 17 0 1 224 1 224 3.94e-152 421
Msa1062070 MtrunA17_Chr7g0240551 91.964 224 18 0 1 224 1 224 2.33e-151 419
Msa1062070 MtrunA17_Chr7g0240541 87.500 224 28 0 1 224 1 224 3.15e-143 399
Msa1062070 MtrunA17_Chr7g0240561 82.143 224 40 0 1 224 1 224 2.56e-134 376
Msa1062070 MtrunA17_Chr7g0240581 79.911 224 45 0 1 224 1 224 7.91e-134 375
Msa1062070 MtrunA17_Chr7g0240511 81.696 224 36 1 1 224 1 219 5.31e-131 367
Msa1062070 MtrunA17_Chr7g0240521 77.778 225 49 1 1 224 8 232 1.07e-116 332
Msa1062070 MtrunA17_Chr7g0240631 69.507 223 68 0 1 223 1 223 3.34e-116 330
Msa1062070 MtrunA17_Chr7g0240641 69.058 223 69 0 1 223 1 223 2.28e-113 323
Msa1062070 MtrunA17_Chr7g0240681 70.667 225 65 1 1 224 1 225 1.00e-112 322
Msa1062070 MtrunA17_Chr7g0240611 68.161 223 67 1 1 223 1 219 1.50e-107 308
Msa1062070 MtrunA17_Chr4g0008791 63.677 223 81 0 1 223 1 223 7.52e-105 301
Msa1062070 MtrunA17_Chr7g0240691 64.384 219 77 1 6 223 36 254 8.64e-101 293
Msa1062070 MtrunA17_Chr7g0240671 64.251 207 70 1 8 214 5 207 1.13e-93 273
Msa1062070 MtrunA17_Chr4g0008781 60.930 215 82 2 2 215 3 216 4.53e-92 269
Msa1062070 MtrunA17_Chr7g0240651 64.414 222 75 1 1 222 1 218 6.13e-91 266
Msa1062070 MtrunA17_Chr7g0240661 65.421 214 70 1 1 214 1 210 1.79e-88 260
Msa1062070 MtrunA17_Chr6g0483141 48.077 208 106 2 7 213 3 209 1.73e-64 199
Msa1062070 MtrunA17_Chr1g0196771 46.364 220 113 3 6 222 2 219 2.26e-62 194
Msa1062070 MtrunA17_Chr3g0132581 46.818 220 115 2 5 223 3 221 1.02e-60 189
Msa1062070 MtrunA17_Chr8g0379581 43.779 217 120 2 4 219 2 217 8.79e-60 187
Msa1062070 MtrunA17_Chr1g0212301 43.119 218 121 2 7 221 3 220 7.88e-57 179
Msa1062070 MtrunA17_Chr8g0379561 43.779 217 119 3 1 216 1 215 5.40e-56 177
Msa1062070 MtrunA17_Chr5g0417011 42.342 222 120 3 1 215 1 221 7.55e-55 175
Msa1062070 MtrunA17_Chr1g0196691 42.273 220 124 1 7 223 28 247 3.18e-52 169
Msa1062070 MtrunA17_Chr5g0415411 41.228 228 124 3 1 220 1 226 9.27e-51 164
Msa1062070 MtrunA17_Chr4g0029341 42.056 214 118 3 6 215 3 214 1.14e-50 164
Msa1062070 MtrunA17_Chr1g0196661 40.724 221 127 2 7 224 3 222 2.96e-49 160
Msa1062070 MtrunA17_Chr8g0363751 42.009 219 119 3 5 215 3 221 9.68e-49 159
Msa1062070 MtrunA17_Chr1g0196721 40.183 219 127 2 8 223 3 220 1.18e-48 159
Msa1062070 MtrunA17_Chr1g0196711 38.914 221 131 2 7 224 3 222 9.77e-48 156
Msa1062070 MtrunA17_Chr2g0312771 40.191 209 120 5 6 212 3 208 3.79e-45 150
Msa1062070 MtrunA17_Chr2g0312731 40.777 206 117 5 6 209 3 205 8.34e-45 149
Msa1062070 MtrunA17_Chr3g0107731 43.216 199 108 5 16 212 18 213 1.27e-44 149
Msa1062070 MtrunA17_Chr2g0312751 39.713 209 121 5 6 212 3 208 1.94e-44 148
Msa1062070 MtrunA17_Chr3g0107741 40.758 211 120 5 4 212 6 213 1.20e-42 143
Msa1062070 MtrunA17_Chr2g0312791 41.176 204 116 4 6 207 3 204 5.67e-42 142
Msa1062070 MtrunA17_Chr4g0069471 45.455 187 94 5 3 186 21 202 1.55e-41 140
Msa1062070 MtrunA17_Chr2g0312781 38.278 209 124 5 1 207 15 220 1.84e-41 140
Msa1062070 MtrunA17_Chr8g0357211 40.670 209 114 6 16 218 13 217 2.85e-41 140
Msa1062070 MtrunA17_Chr8g0357241 40.670 209 114 6 16 218 13 217 5.28e-41 139
Msa1062070 MtrunA17_Chr2g0312811 39.151 212 120 7 6 212 3 210 2.10e-39 135
Msa1062070 MtrunA17_Chr2g0312721 37.619 210 124 5 6 212 3 208 3.96e-39 134
Msa1062070 MtrunA17_Chr5g0433801 38.679 212 125 4 3 212 2 210 8.60e-39 133
Msa1062070 MtrunA17_Chr2g0312691 37.037 216 131 4 7 220 4 216 2.73e-36 127
Msa1062070 MtrunA17_Chr8g0391631 46.795 156 73 4 7 153 21 175 4.53e-36 125
Msa1062070 MtrunA17_Chr2g0312681 36.058 208 128 4 7 212 4 208 2.83e-35 124
Msa1062070 MtrunA17_Chr2g0312711 38.743 191 111 4 16 204 13 199 5.24e-30 110
Msa1062070 MtrunA17_Chr2g0313561 43.077 65 36 1 51 114 2 66 1.30e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1062070 AT3G09270.1 53.125 224 101 4 3 223 2 224 4.67e-77 231
Msa1062070 AT2G29420.1 47.945 219 112 2 3 220 5 222 1.17e-71 218
Msa1062070 AT2G29490.1 49.048 210 102 4 1 207 1 208 1.22e-60 190
Msa1062070 AT2G29450.1 47.826 207 106 2 3 207 2 208 2.09e-58 184
Msa1062070 AT2G29480.1 47.847 209 106 3 1 207 1 208 7.95e-58 182
Msa1062070 AT2G29460.1 44.595 222 120 3 1 220 1 221 5.88e-56 178
Msa1062070 AT2G29440.1 45.933 209 109 4 1 207 1 207 2.72e-54 174
Msa1062070 AT2G29470.1 45.024 211 110 5 1 207 1 209 2.62e-53 171
Msa1062070 AT1G10370.1 41.629 221 120 3 1 214 1 219 8.36e-50 162
Msa1062070 AT1G69930.1 36.283 226 138 2 2 221 7 232 1.29e-48 159
Msa1062070 AT5G62480.1 41.284 218 117 4 8 215 9 225 2.65e-48 159
Msa1062070 AT1G59700.1 44.037 218 114 4 5 214 4 221 2.78e-48 159
Msa1062070 AT1G27130.1 38.667 225 129 4 1 217 1 224 6.86e-47 155
Msa1062070 AT1G59670.1 41.204 216 119 3 5 212 4 219 1.41e-46 154
Msa1062070 AT1G78380.1 41.827 208 116 4 7 212 4 208 1.30e-45 151
Msa1062070 AT1G74590.1 37.727 220 130 3 1 214 1 219 1.65e-45 151
Msa1062070 AT1G10360.1 37.037 216 129 2 6 214 4 219 1.28e-44 149
Msa1062070 AT1G17170.1 40.553 217 123 5 6 220 3 215 1.96e-44 148
Msa1062070 AT1G78370.1 41.667 204 113 6 16 217 13 212 2.91e-44 148
Msa1062070 AT1G78340.1 43.256 215 114 6 6 216 3 213 3.71e-44 147
Msa1062070 AT1G53680.1 40.094 212 122 4 1 209 1 210 6.60e-43 144
Msa1062070 AT1G27140.1 38.261 230 126 7 1 218 1 226 1.60e-42 144
Msa1062070 AT1G78320.1 39.904 208 120 4 5 210 2 206 1.91e-42 143
Msa1062070 AT1G69920.1 36.404 228 135 4 1 218 26 253 4.08e-41 140
Msa1062070 AT1G17180.1 40.191 209 120 5 6 212 3 208 4.95e-41 139
Msa1062070 AT1G78360.1 41.148 209 117 6 7 212 4 209 6.46e-39 134
Msa1062070 AT3G43800.1 38.164 207 119 6 4 204 2 205 9.54e-38 131
Msa1062070 AT1G17190.1 42.697 178 97 5 16 191 14 188 1.02e-36 128
Msa1062070 AT5G62480.2 32.719 217 111 4 8 215 9 199 1.66e-30 112
Msa1062070 AT5G62480.3 32.719 217 110 4 8 215 9 198 3.45e-30 111
Msa1062070 AT1G78320.2 33.010 206 108 4 6 210 3 179 3.36e-26 100
Msa1062070 AT2G02380.1 26.512 215 139 6 5 207 9 216 9.18e-15 70.9
Msa1062070 AT2G02390.1 26.728 217 140 5 3 207 4 213 2.11e-12 64.7
Msa1062070 AT2G02390.3 26.339 224 139 6 3 207 4 220 1.55e-11 62.4
Msa1062070 AT2G02390.2 37.113 97 57 2 3 96 4 99 3.96e-11 60.5

Find 66 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAAATAGATCAATTTA+AGG 0.159458 7_2:+52608013 Msa1062070:exon
AAAGAGCCTTGGCACGTTTC+TGG 0.164876 7_2:+52607035 Msa1062070:CDS
TACCTTGTCATCTATGAAAT+TGG 0.177857 7_2:-52607059 None:intergenic
ATATGTACTTGTGAAATTTA+AGG 0.186318 7_2:+52608038 Msa1062070:three_prime_UTR
TGTAATCAAACAACTGATTT+TGG 0.203727 7_2:-52606716 None:intergenic
AATCCTTATTTCAGAGAAAA+TGG 0.232644 7_2:+52608201 Msa1062070:three_prime_UTR
TTGGATGATTGTTGAATTCT+TGG 0.233990 7_2:-52607918 None:intergenic
AATCACAAGGGACTCTGATA+TGG 0.285005 7_2:-52606954 None:intergenic
CTCCTAGGTTAAGAAATTCT+AGG 0.289936 7_2:+52608143 Msa1062070:three_prime_UTR
AGTCCAAATGCTTCTTGTAT+AGG 0.292947 7_2:-52607850 None:intergenic
ACAGGAACTTTCTTGTAAAC+AGG 0.303772 7_2:-52606911 None:intergenic
TTCTTTGGTGGGGAGGATAT+TGG 0.313435 7_2:+52607784 Msa1062070:CDS
TAAGGATCATTAGGCAAGAT+AGG 0.313856 7_2:-52607010 None:intergenic
CTCTACGATGGCATCAAATA+AGG 0.319615 7_2:+52606751 Msa1062070:exon
TGGCTCCAATTGTAAAGCTT+TGG 0.323925 7_2:-52607898 None:intergenic
GAGCTCAAGGACAAATTCTT+TGG 0.339009 7_2:+52607769 Msa1062070:CDS
TTGGTCATTGATTGATTCCT+AGG 0.341347 7_2:-52606697 None:intergenic
TTAAATTTCACAAGTACATA+TGG 0.351466 7_2:-52608036 None:intergenic
CAACAATCATCCAATTGTTA+AGG 0.374730 7_2:+52607927 Msa1062070:CDS
GCCTCCTAGAGAGACCCTTT+TGG 0.417652 7_2:+52607957 Msa1062070:CDS
CCACCTATACAAGAAGCATT+TGG 0.430472 7_2:+52607847 Msa1062070:CDS
AATTTCCAAAGCTTTACAAT+TGG 0.430707 7_2:+52607893 Msa1062070:CDS
ATCTCCACCCTTGTTACAAA+TGG 0.430811 7_2:-52606806 None:intergenic
CAACACCTTGGATTTCTCCT+AGG 0.454718 7_2:+52608128 Msa1062070:three_prime_UTR
TGTATATAAAAGCAAATCCT+AGG 0.472351 7_2:+52606680 Msa1062070:five_prime_UTR
ACCAGTGCTCCAATGGTGTT+CGG 0.478017 7_2:+52607665 Msa1062070:intron
TTATCATTATGAACAAATAC+AGG 0.499212 7_2:-52606929 None:intergenic
TTGAATATATTGATGAGACT+TGG 0.500568 7_2:+52606978 Msa1062070:CDS
ACAAGCTTTCCGAACACCAT+TGG 0.501376 7_2:-52607674 None:intergenic
AATATGAGCAAGAAAAGGTT+GGG 0.503590 7_2:+52606858 Msa1062070:CDS
AAGGATCATTAGGCAAGATA+GGG 0.505915 7_2:-52607009 None:intergenic
GAGCTTTGTAGAATGCCAAA+AGG 0.508352 7_2:-52607972 None:intergenic
CTCAAGGACAAATTCTTTGG+TGG 0.512720 7_2:+52607772 Msa1062070:CDS
CAGGAACTTTCTTGTAAACA+GGG 0.515430 7_2:-52606910 None:intergenic
AAATATGAGCAAGAAAAGGT+TGG 0.516900 7_2:+52606857 Msa1062070:CDS
ATCACAAGGGACTCTGATAT+GGG 0.519485 7_2:-52606953 None:intergenic
CCAAATGCTTCTTGTATAGG+TGG 0.519842 7_2:-52607847 None:intergenic
TCAAGGACAAATTCTTTGGT+GGG 0.523453 7_2:+52607773 Msa1062070:CDS
AGAACGTGAGAAAAGTATTG+AGG 0.533638 7_2:+52607714 Msa1062070:CDS
ATTTCTTGAGAATGAGCTCA+AGG 0.546430 7_2:+52607756 Msa1062070:CDS
ATCAAATAAGGAAGAGGTGA+AGG 0.549693 7_2:+52606763 Msa1062070:CDS
ATACAAATATGAGCAAGAAA+AGG 0.550926 7_2:+52606853 Msa1062070:CDS
GGAGATTGCTCTAAAACTGA+AGG 0.560079 7_2:+52606823 Msa1062070:CDS
TGATCCTTATAAAAGAGCCT+TGG 0.561258 7_2:+52607024 Msa1062070:CDS
AGCTTTGTAGAATGCCAAAA+GGG 0.565015 7_2:-52607971 None:intergenic
TGGAAAGTCCATTTGTAACA+AGG 0.573831 7_2:+52606798 Msa1062070:CDS
CAAGGACAAATTCTTTGGTG+GGG 0.574827 7_2:+52607774 Msa1062070:CDS
GATGGCATCAAATAAGGAAG+AGG 0.575114 7_2:+52606757 Msa1062070:exon
GGACAAATTCTTTGGTGGGG+AGG 0.579613 7_2:+52607777 Msa1062070:CDS
ATCCTAGAATTTCTTAACCT+AGG 0.580226 7_2:-52608145 None:intergenic
AATGCCAAAAGGGTCTCTCT+AGG 0.585218 7_2:-52607961 None:intergenic
ACTAGATATATGCAACACCT+TGG 0.588775 7_2:+52608116 Msa1062070:three_prime_UTR
AAGTATTGAGGAAACAAAAG+AGG 0.591561 7_2:+52607726 Msa1062070:CDS
ACTGAAATTGTTCACTAGTG+AGG 0.598807 7_2:+52607870 Msa1062070:CDS
CAATATATTCAAGAATCACA+AGG 0.601780 7_2:-52606967 None:intergenic
CAAATGCTTCTTGTATAGGT+GGG 0.601872 7_2:-52607846 None:intergenic
TTGTGAGACCAGTGCTCCAA+TGG 0.602330 7_2:+52607658 Msa1062070:intron
GGAAAGTCCATTTGTAACAA+GGG 0.613221 7_2:+52606799 Msa1062070:CDS
GCCAAAAGGGTCTCTCTAGG+AGG 0.628476 7_2:-52607958 None:intergenic
GTCCAATTTCATAGATGACA+AGG 0.633419 7_2:+52607057 Msa1062070:CDS
GAGATTGCTCTAAAACTGAA+GGG 0.636453 7_2:+52606824 Msa1062070:CDS
AAGTCCATTTGTAACAAGGG+TGG 0.642673 7_2:+52606802 Msa1062070:CDS
CTTAACCTAGGAGAAATCCA+AGG 0.645699 7_2:-52608133 None:intergenic
TAATTGATCAAGCTCTACGA+TGG 0.664909 7_2:+52606739 Msa1062070:exon
ATTGGACCAGAAACGTGCCA+AGG 0.673197 7_2:-52607041 None:intergenic
AATATATTCAAGAATCACAA+GGG 0.678725 7_2:-52606966 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATAAACAAAATAATTTTTT+TGG + chr7_2:52607263-52607282 Msa1062070:intron 10.0%
!!! ATTTGTTAAAAAAAAACAAT+TGG - chr7_2:52607451-52607470 None:intergenic 10.0%
!!! GATAAACAAAATAATTTTTT+TGG + chr7_2:52607263-52607282 Msa1062070:intron 10.0%
!!! ATTTGTTAAAAAAAAACAAT+TGG - chr7_2:52607451-52607470 None:intergenic 10.0%
!! AAACTAGTAAAAAATAAACT+AGG - chr7_2:52606617-52606636 None:intergenic 15.0%
!!! TGAAACAATTTTTTATCAAA+TGG - chr7_2:52607361-52607380 None:intergenic 15.0%
!!! AAGTTAATTGATTTGTTTTT+AGG - chr7_2:52607581-52607600 None:intergenic 15.0%
!! AAACTAGTAAAAAATAAACT+AGG - chr7_2:52606617-52606636 None:intergenic 15.0%
!!! TGAAACAATTTTTTATCAAA+TGG - chr7_2:52607361-52607380 None:intergenic 15.0%
!!! AAGTTAATTGATTTGTTTTT+AGG - chr7_2:52607581-52607600 None:intergenic 15.0%
!!! GGATTATTTTTCAACAAAAA+CGG - chr7_2:52606654-52606673 None:intergenic 20.0%
!! TTATCATTATGAACAAATAC+AGG - chr7_2:52606932-52606951 None:intergenic 20.0%
!! AATATATTCAAGAATCACAA+GGG - chr7_2:52606969-52606988 None:intergenic 20.0%
!!! TTTTTTTTTGTTGACAACAT+GGG - chr7_2:52607233-52607252 None:intergenic 20.0%
!! TAAAAAAAAACAATTGGACT+CGG - chr7_2:52607445-52607464 None:intergenic 20.0%
!! CTTCAAAATAGATCAATTTA+AGG + chr7_2:52608013-52608032 Msa1062070:exon 20.0%
!! TTAAATTTCACAAGTACATA+TGG - chr7_2:52608039-52608058 None:intergenic 20.0%
!! ATATGTACTTGTGAAATTTA+AGG + chr7_2:52608038-52608057 Msa1062070:three_prime_UTR 20.0%
!!! GGATTATTTTTCAACAAAAA+CGG - chr7_2:52606654-52606673 None:intergenic 20.0%
!! TTATCATTATGAACAAATAC+AGG - chr7_2:52606932-52606951 None:intergenic 20.0%
!! AATATATTCAAGAATCACAA+GGG - chr7_2:52606969-52606988 None:intergenic 20.0%
!!! TTTTTTTTTGTTGACAACAT+GGG - chr7_2:52607233-52607252 None:intergenic 20.0%
!! TAAAAAAAAACAATTGGACT+CGG - chr7_2:52607445-52607464 None:intergenic 20.0%
!! CTTCAAAATAGATCAATTTA+AGG + chr7_2:52608013-52608032 Msa1062070:exon 20.0%
!! TTAAATTTCACAAGTACATA+TGG - chr7_2:52608039-52608058 None:intergenic 20.0%
!! ATATGTACTTGTGAAATTTA+AGG + chr7_2:52608038-52608057 Msa1062070:three_prime_UTR 20.0%
! TGTATATAAAAGCAAATCCT+AGG + chr7_2:52606680-52606699 Msa1062070:five_prime_UTR 25.0%
!!! TGTAATCAAACAACTGATTT+TGG - chr7_2:52606719-52606738 None:intergenic 25.0%
! ATACAAATATGAGCAAGAAA+AGG + chr7_2:52606853-52606872 Msa1062070:CDS 25.0%
! CAATATATTCAAGAATCACA+AGG - chr7_2:52606970-52606989 None:intergenic 25.0%
! TTGAATATATTGATGAGACT+TGG + chr7_2:52606978-52606997 Msa1062070:CDS 25.0%
! ACATCGATAAAAATAGAAGA+GGG - chr7_2:52607092-52607111 None:intergenic 25.0%
! TACATCGATAAAAATAGAAG+AGG - chr7_2:52607093-52607112 None:intergenic 25.0%
! TAAAGTTGGATATTTGAACT+TGG - chr7_2:52607124-52607143 None:intergenic 25.0%
! TATTTAGTGCTAACTAAAGT+TGG - chr7_2:52607170-52607189 None:intergenic 25.0%
!! CTAAGTAAATTTGAGATCTT+AGG + chr7_2:52607195-52607214 Msa1062070:intron 25.0%
!!! CTTTTTTTTTGTTGACAACA+TGG - chr7_2:52607234-52607253 None:intergenic 25.0%
!! ATGGTACTTTATTTACCTTT+CGG - chr7_2:52607342-52607361 None:intergenic 25.0%
! AAAAAAAAACAATTGGACTC+GGG - chr7_2:52607444-52607463 None:intergenic 25.0%
!!! TGAGAAAGTATCTAACTTAA+AGG + chr7_2:52607537-52607556 Msa1062070:intron 25.0%
!! TTTAGGTTAAATATCACATG+TGG - chr7_2:52607564-52607583 None:intergenic 25.0%
! AATTTCCAAAGCTTTACAAT+TGG + chr7_2:52607893-52607912 Msa1062070:CDS 25.0%
!! AATCCTTATTTCAGAGAAAA+TGG + chr7_2:52608201-52608220 Msa1062070:three_prime_UTR 25.0%
! TGTATATAAAAGCAAATCCT+AGG + chr7_2:52606680-52606699 Msa1062070:five_prime_UTR 25.0%
!!! TGTAATCAAACAACTGATTT+TGG - chr7_2:52606719-52606738 None:intergenic 25.0%
! ATACAAATATGAGCAAGAAA+AGG + chr7_2:52606853-52606872 Msa1062070:CDS 25.0%
! CAATATATTCAAGAATCACA+AGG - chr7_2:52606970-52606989 None:intergenic 25.0%
! TTGAATATATTGATGAGACT+TGG + chr7_2:52606978-52606997 Msa1062070:CDS 25.0%
! ACATCGATAAAAATAGAAGA+GGG - chr7_2:52607092-52607111 None:intergenic 25.0%
! TACATCGATAAAAATAGAAG+AGG - chr7_2:52607093-52607112 None:intergenic 25.0%
! TAAAGTTGGATATTTGAACT+TGG - chr7_2:52607124-52607143 None:intergenic 25.0%
! TATTTAGTGCTAACTAAAGT+TGG - chr7_2:52607170-52607189 None:intergenic 25.0%
!! CTAAGTAAATTTGAGATCTT+AGG + chr7_2:52607195-52607214 Msa1062070:intron 25.0%
!!! CTTTTTTTTTGTTGACAACA+TGG - chr7_2:52607234-52607253 None:intergenic 25.0%
!! ATGGTACTTTATTTACCTTT+CGG - chr7_2:52607342-52607361 None:intergenic 25.0%
! AAAAAAAAACAATTGGACTC+GGG - chr7_2:52607444-52607463 None:intergenic 25.0%
!!! TGAGAAAGTATCTAACTTAA+AGG + chr7_2:52607537-52607556 Msa1062070:intron 25.0%
!! TTTAGGTTAAATATCACATG+TGG - chr7_2:52607564-52607583 None:intergenic 25.0%
! AATTTCCAAAGCTTTACAAT+TGG + chr7_2:52607893-52607912 Msa1062070:CDS 25.0%
!! AATCCTTATTTCAGAGAAAA+TGG + chr7_2:52608201-52608220 Msa1062070:three_prime_UTR 25.0%
!! TTGCTTTTATATACAGAGCA+AGG - chr7_2:52606675-52606694 None:intergenic 30.0%
AAATATGAGCAAGAAAAGGT+TGG + chr7_2:52606857-52606876 Msa1062070:CDS 30.0%
AATATGAGCAAGAAAAGGTT+GGG + chr7_2:52606858-52606877 Msa1062070:CDS 30.0%
! GCTCTTTTATAAGGATCATT+AGG - chr7_2:52607022-52607041 None:intergenic 30.0%
TACCTTGTCATCTATGAAAT+TGG - chr7_2:52607062-52607081 None:intergenic 30.0%
TGTTAACCATTCGATTATCA+AGG + chr7_2:52607287-52607306 Msa1062070:intron 30.0%
GTTAACCATTCGATTATCAA+GGG + chr7_2:52607288-52607307 Msa1062070:intron 30.0%
! TTTATCCCTTGATAATCGAA+TGG - chr7_2:52607296-52607315 None:intergenic 30.0%
AGAATCTGAATTCGATTTCT+GGG - chr7_2:52607384-52607403 None:intergenic 30.0%
AAGAATCTGAATTCGATTTC+TGG - chr7_2:52607385-52607404 None:intergenic 30.0%
!! CTAAACAATTCGCCATTTTA+TGG + chr7_2:52607405-52607424 Msa1062070:intron 30.0%
GAGTAATGAGTTCCATAAAA+TGG - chr7_2:52607420-52607439 None:intergenic 30.0%
!! AAGTATTGAGGAAACAAAAG+AGG + chr7_2:52607726-52607745 Msa1062070:CDS 30.0%
GAACCAAAAAGCTATGATTA+CGG - chr7_2:52607827-52607846 None:intergenic 30.0%
TTGGATGATTGTTGAATTCT+TGG - chr7_2:52607921-52607940 None:intergenic 30.0%
CAACAATCATCCAATTGTTA+AGG + chr7_2:52607927-52607946 Msa1062070:CDS 30.0%
! GGCAATTTTTCCTTAACAAT+TGG - chr7_2:52607940-52607959 None:intergenic 30.0%
ATCCTAGAATTTCTTAACCT+AGG - chr7_2:52608148-52608167 None:intergenic 30.0%
!!! ATGCCATTTTCTCTGAAATA+AGG - chr7_2:52608207-52608226 None:intergenic 30.0%
!! TTGCTTTTATATACAGAGCA+AGG - chr7_2:52606675-52606694 None:intergenic 30.0%
AAATATGAGCAAGAAAAGGT+TGG + chr7_2:52606857-52606876 Msa1062070:CDS 30.0%
AATATGAGCAAGAAAAGGTT+GGG + chr7_2:52606858-52606877 Msa1062070:CDS 30.0%
! GCTCTTTTATAAGGATCATT+AGG - chr7_2:52607022-52607041 None:intergenic 30.0%
TACCTTGTCATCTATGAAAT+TGG - chr7_2:52607062-52607081 None:intergenic 30.0%
TGTTAACCATTCGATTATCA+AGG + chr7_2:52607287-52607306 Msa1062070:intron 30.0%
GTTAACCATTCGATTATCAA+GGG + chr7_2:52607288-52607307 Msa1062070:intron 30.0%
! TTTATCCCTTGATAATCGAA+TGG - chr7_2:52607296-52607315 None:intergenic 30.0%
AGAATCTGAATTCGATTTCT+GGG - chr7_2:52607384-52607403 None:intergenic 30.0%
AAGAATCTGAATTCGATTTC+TGG - chr7_2:52607385-52607404 None:intergenic 30.0%
!! CTAAACAATTCGCCATTTTA+TGG + chr7_2:52607405-52607424 Msa1062070:intron 30.0%
GAGTAATGAGTTCCATAAAA+TGG - chr7_2:52607420-52607439 None:intergenic 30.0%
!! AAGTATTGAGGAAACAAAAG+AGG + chr7_2:52607726-52607745 Msa1062070:CDS 30.0%
GAACCAAAAAGCTATGATTA+CGG - chr7_2:52607827-52607846 None:intergenic 30.0%
TTGGATGATTGTTGAATTCT+TGG - chr7_2:52607921-52607940 None:intergenic 30.0%
CAACAATCATCCAATTGTTA+AGG + chr7_2:52607927-52607946 Msa1062070:CDS 30.0%
! GGCAATTTTTCCTTAACAAT+TGG - chr7_2:52607940-52607959 None:intergenic 30.0%
ATCCTAGAATTTCTTAACCT+AGG - chr7_2:52608148-52608167 None:intergenic 30.0%
!!! ATGCCATTTTCTCTGAAATA+AGG - chr7_2:52608207-52608226 None:intergenic 30.0%
! TTGGTCATTGATTGATTCCT+AGG - chr7_2:52606700-52606719 None:intergenic 35.0%
TAATTGATCAAGCTCTACGA+TGG + chr7_2:52606739-52606758 Msa1062070:exon 35.0%
ATCAAATAAGGAAGAGGTGA+AGG + chr7_2:52606763-52606782 Msa1062070:CDS 35.0%
TGGAAAGTCCATTTGTAACA+AGG + chr7_2:52606798-52606817 Msa1062070:CDS 35.0%
GGAAAGTCCATTTGTAACAA+GGG + chr7_2:52606799-52606818 Msa1062070:CDS 35.0%
!! GAGATTGCTCTAAAACTGAA+GGG + chr7_2:52606824-52606843 Msa1062070:CDS 35.0%
CAGGAACTTTCTTGTAAACA+GGG - chr7_2:52606913-52606932 None:intergenic 35.0%
ACAGGAACTTTCTTGTAAAC+AGG - chr7_2:52606914-52606933 None:intergenic 35.0%
AAGGATCATTAGGCAAGATA+GGG - chr7_2:52607012-52607031 None:intergenic 35.0%
TAAGGATCATTAGGCAAGAT+AGG - chr7_2:52607013-52607032 None:intergenic 35.0%
TGATCCTTATAAAAGAGCCT+TGG + chr7_2:52607024-52607043 Msa1062070:CDS 35.0%
GTCCAATTTCATAGATGACA+AGG + chr7_2:52607057-52607076 Msa1062070:CDS 35.0%
!! AGAACGTGAGAAAAGTATTG+AGG + chr7_2:52607714-52607733 Msa1062070:CDS 35.0%
ATTTCTTGAGAATGAGCTCA+AGG + chr7_2:52607756-52607775 Msa1062070:CDS 35.0%
TCAAGGACAAATTCTTTGGT+GGG + chr7_2:52607773-52607792 Msa1062070:CDS 35.0%
CAAATGCTTCTTGTATAGGT+GGG - chr7_2:52607849-52607868 None:intergenic 35.0%
AGTCCAAATGCTTCTTGTAT+AGG - chr7_2:52607853-52607872 None:intergenic 35.0%
ACTGAAATTGTTCACTAGTG+AGG + chr7_2:52607870-52607889 Msa1062070:CDS 35.0%
! AGCTTTGTAGAATGCCAAAA+GGG - chr7_2:52607974-52607993 None:intergenic 35.0%
ACTAGATATATGCAACACCT+TGG + chr7_2:52608116-52608135 Msa1062070:three_prime_UTR 35.0%
CTCCTAGGTTAAGAAATTCT+AGG + chr7_2:52608143-52608162 Msa1062070:three_prime_UTR 35.0%
! TTGGTCATTGATTGATTCCT+AGG - chr7_2:52606700-52606719 None:intergenic 35.0%
TAATTGATCAAGCTCTACGA+TGG + chr7_2:52606739-52606758 Msa1062070:exon 35.0%
ATCAAATAAGGAAGAGGTGA+AGG + chr7_2:52606763-52606782 Msa1062070:CDS 35.0%
TGGAAAGTCCATTTGTAACA+AGG + chr7_2:52606798-52606817 Msa1062070:CDS 35.0%
GGAAAGTCCATTTGTAACAA+GGG + chr7_2:52606799-52606818 Msa1062070:CDS 35.0%
!! GAGATTGCTCTAAAACTGAA+GGG + chr7_2:52606824-52606843 Msa1062070:CDS 35.0%
CAGGAACTTTCTTGTAAACA+GGG - chr7_2:52606913-52606932 None:intergenic 35.0%
ACAGGAACTTTCTTGTAAAC+AGG - chr7_2:52606914-52606933 None:intergenic 35.0%
AAGGATCATTAGGCAAGATA+GGG - chr7_2:52607012-52607031 None:intergenic 35.0%
TAAGGATCATTAGGCAAGAT+AGG - chr7_2:52607013-52607032 None:intergenic 35.0%
TGATCCTTATAAAAGAGCCT+TGG + chr7_2:52607024-52607043 Msa1062070:CDS 35.0%
GTCCAATTTCATAGATGACA+AGG + chr7_2:52607057-52607076 Msa1062070:CDS 35.0%
!! AGAACGTGAGAAAAGTATTG+AGG + chr7_2:52607714-52607733 Msa1062070:CDS 35.0%
ATTTCTTGAGAATGAGCTCA+AGG + chr7_2:52607756-52607775 Msa1062070:CDS 35.0%
TCAAGGACAAATTCTTTGGT+GGG + chr7_2:52607773-52607792 Msa1062070:CDS 35.0%
CAAATGCTTCTTGTATAGGT+GGG - chr7_2:52607849-52607868 None:intergenic 35.0%
AGTCCAAATGCTTCTTGTAT+AGG - chr7_2:52607853-52607872 None:intergenic 35.0%
ACTGAAATTGTTCACTAGTG+AGG + chr7_2:52607870-52607889 Msa1062070:CDS 35.0%
! AGCTTTGTAGAATGCCAAAA+GGG - chr7_2:52607974-52607993 None:intergenic 35.0%
ACTAGATATATGCAACACCT+TGG + chr7_2:52608116-52608135 Msa1062070:three_prime_UTR 35.0%
CTCCTAGGTTAAGAAATTCT+AGG + chr7_2:52608143-52608162 Msa1062070:three_prime_UTR 35.0%
CTCTACGATGGCATCAAATA+AGG + chr7_2:52606751-52606770 Msa1062070:exon 40.0%
GATGGCATCAAATAAGGAAG+AGG + chr7_2:52606757-52606776 Msa1062070:exon 40.0%
! AAGGAAGAGGTGAAGGTTTT+TGG + chr7_2:52606770-52606789 Msa1062070:CDS 40.0%
!! AGAGGTGAAGGTTTTTGGAT+TGG + chr7_2:52606775-52606794 Msa1062070:CDS 40.0%
AAGTCCATTTGTAACAAGGG+TGG + chr7_2:52606802-52606821 Msa1062070:CDS 40.0%
ATCTCCACCCTTGTTACAAA+TGG - chr7_2:52606809-52606828 None:intergenic 40.0%
!! GGAGATTGCTCTAAAACTGA+AGG + chr7_2:52606823-52606842 Msa1062070:CDS 40.0%
ATCACAAGGGACTCTGATAT+GGG - chr7_2:52606956-52606975 None:intergenic 40.0%
AATCACAAGGGACTCTGATA+TGG - chr7_2:52606957-52606976 None:intergenic 40.0%
TTGTTGACAACATGGGTCTA+AGG - chr7_2:52607226-52607245 None:intergenic 40.0%
TAATTCGAACTTCAGCCGAA+AGG + chr7_2:52607324-52607343 Msa1062070:intron 40.0%
!! AGCACTGGTCTCACAAATTA+AGG - chr7_2:52607654-52607673 None:intergenic 40.0%
GAGCTCAAGGACAAATTCTT+TGG + chr7_2:52607769-52607788 Msa1062070:CDS 40.0%
CTCAAGGACAAATTCTTTGG+TGG + chr7_2:52607772-52607791 Msa1062070:CDS 40.0%
CAAGGACAAATTCTTTGGTG+GGG + chr7_2:52607774-52607793 Msa1062070:CDS 40.0%
! CTGCCGTAATCATAGCTTTT+TGG + chr7_2:52607821-52607840 Msa1062070:CDS 40.0%
CCAAATGCTTCTTGTATAGG+TGG - chr7_2:52607850-52607869 None:intergenic 40.0%
!! CCACCTATACAAGAAGCATT+TGG + chr7_2:52607847-52607866 Msa1062070:CDS 40.0%
TGGCTCCAATTGTAAAGCTT+TGG - chr7_2:52607901-52607920 None:intergenic 40.0%
! GAGCTTTGTAGAATGCCAAA+AGG - chr7_2:52607975-52607994 None:intergenic 40.0%
CTTAACCTAGGAGAAATCCA+AGG - chr7_2:52608136-52608155 None:intergenic 40.0%
CTCTACGATGGCATCAAATA+AGG + chr7_2:52606751-52606770 Msa1062070:exon 40.0%
GATGGCATCAAATAAGGAAG+AGG + chr7_2:52606757-52606776 Msa1062070:exon 40.0%
! AAGGAAGAGGTGAAGGTTTT+TGG + chr7_2:52606770-52606789 Msa1062070:CDS 40.0%
!! AGAGGTGAAGGTTTTTGGAT+TGG + chr7_2:52606775-52606794 Msa1062070:CDS 40.0%
AAGTCCATTTGTAACAAGGG+TGG + chr7_2:52606802-52606821 Msa1062070:CDS 40.0%
ATCTCCACCCTTGTTACAAA+TGG - chr7_2:52606809-52606828 None:intergenic 40.0%
!! GGAGATTGCTCTAAAACTGA+AGG + chr7_2:52606823-52606842 Msa1062070:CDS 40.0%
ATCACAAGGGACTCTGATAT+GGG - chr7_2:52606956-52606975 None:intergenic 40.0%
AATCACAAGGGACTCTGATA+TGG - chr7_2:52606957-52606976 None:intergenic 40.0%
TTGTTGACAACATGGGTCTA+AGG - chr7_2:52607226-52607245 None:intergenic 40.0%
TAATTCGAACTTCAGCCGAA+AGG + chr7_2:52607324-52607343 Msa1062070:intron 40.0%
!! AGCACTGGTCTCACAAATTA+AGG - chr7_2:52607654-52607673 None:intergenic 40.0%
GAGCTCAAGGACAAATTCTT+TGG + chr7_2:52607769-52607788 Msa1062070:CDS 40.0%
CTCAAGGACAAATTCTTTGG+TGG + chr7_2:52607772-52607791 Msa1062070:CDS 40.0%
CAAGGACAAATTCTTTGGTG+GGG + chr7_2:52607774-52607793 Msa1062070:CDS 40.0%
! CTGCCGTAATCATAGCTTTT+TGG + chr7_2:52607821-52607840 Msa1062070:CDS 40.0%
CCAAATGCTTCTTGTATAGG+TGG - chr7_2:52607850-52607869 None:intergenic 40.0%
!! CCACCTATACAAGAAGCATT+TGG + chr7_2:52607847-52607866 Msa1062070:CDS 40.0%
TGGCTCCAATTGTAAAGCTT+TGG - chr7_2:52607901-52607920 None:intergenic 40.0%
! GAGCTTTGTAGAATGCCAAA+AGG - chr7_2:52607975-52607994 None:intergenic 40.0%
CTTAACCTAGGAGAAATCCA+AGG - chr7_2:52608136-52608155 None:intergenic 40.0%
!! GGTGAAGGTTTTTGGATTGG+TGG + chr7_2:52606778-52606797 Msa1062070:CDS 45.0%
! CGTGCCAAGGCTCTTTTATA+AGG - chr7_2:52607031-52607050 None:intergenic 45.0%
ACAAGCTTTCCGAACACCAT+TGG - chr7_2:52607677-52607696 None:intergenic 45.0%
TTCTTTGGTGGGGAGGATAT+TGG + chr7_2:52607784-52607803 Msa1062070:CDS 45.0%
AATGCCAAAAGGGTCTCTCT+AGG - chr7_2:52607964-52607983 None:intergenic 45.0%
CAACACCTTGGATTTCTCCT+AGG + chr7_2:52608128-52608147 Msa1062070:three_prime_UTR 45.0%
!! GGTGAAGGTTTTTGGATTGG+TGG + chr7_2:52606778-52606797 Msa1062070:CDS 45.0%
! CGTGCCAAGGCTCTTTTATA+AGG - chr7_2:52607031-52607050 None:intergenic 45.0%
ACAAGCTTTCCGAACACCAT+TGG - chr7_2:52607677-52607696 None:intergenic 45.0%
TTCTTTGGTGGGGAGGATAT+TGG + chr7_2:52607784-52607803 Msa1062070:CDS 45.0%
AATGCCAAAAGGGTCTCTCT+AGG - chr7_2:52607964-52607983 None:intergenic 45.0%
CAACACCTTGGATTTCTCCT+AGG + chr7_2:52608128-52608147 Msa1062070:three_prime_UTR 45.0%
!! AAAAAAAAAAATAATAAAGT+TGG - chr7_2:52607138-52607157 None:intergenic 5.0%
!!! CTTTATTATTTTTTTTTTTA+AGG + chr7_2:52607139-52607158 Msa1062070:intron 5.0%
!!! ATAAACAAAATAATTTTTTT+GGG + chr7_2:52607264-52607283 Msa1062070:intron 5.0%
!! AAAAAAAAAAATAATAAAGT+TGG - chr7_2:52607138-52607157 None:intergenic 5.0%
!!! CTTTATTATTTTTTTTTTTA+AGG + chr7_2:52607139-52607158 Msa1062070:intron 5.0%
!!! ATAAACAAAATAATTTTTTT+GGG + chr7_2:52607264-52607283 Msa1062070:intron 5.0%
AAAGAGCCTTGGCACGTTTC+TGG + chr7_2:52607035-52607054 Msa1062070:CDS 50.0%
ATTGGACCAGAAACGTGCCA+AGG - chr7_2:52607044-52607063 None:intergenic 50.0%
TTGTGAGACCAGTGCTCCAA+TGG + chr7_2:52607658-52607677 Msa1062070:intron 50.0%
ACCAGTGCTCCAATGGTGTT+CGG + chr7_2:52607665-52607684 Msa1062070:intron 50.0%
GGACAAATTCTTTGGTGGGG+AGG + chr7_2:52607777-52607796 Msa1062070:CDS 50.0%
AAAGAGCCTTGGCACGTTTC+TGG + chr7_2:52607035-52607054 Msa1062070:CDS 50.0%
ATTGGACCAGAAACGTGCCA+AGG - chr7_2:52607044-52607063 None:intergenic 50.0%
TTGTGAGACCAGTGCTCCAA+TGG + chr7_2:52607658-52607677 Msa1062070:intron 50.0%
ACCAGTGCTCCAATGGTGTT+CGG + chr7_2:52607665-52607684 Msa1062070:intron 50.0%
GGACAAATTCTTTGGTGGGG+AGG + chr7_2:52607777-52607796 Msa1062070:CDS 50.0%
TCCGAACACCATTGGAGCAC+TGG - chr7_2:52607669-52607688 None:intergenic 55.0%
! GCCTCCTAGAGAGACCCTTT+TGG + chr7_2:52607957-52607976 Msa1062070:CDS 55.0%
GCCAAAAGGGTCTCTCTAGG+AGG - chr7_2:52607961-52607980 None:intergenic 55.0%
TCCGAACACCATTGGAGCAC+TGG - chr7_2:52607669-52607688 None:intergenic 55.0%
! GCCTCCTAGAGAGACCCTTT+TGG + chr7_2:52607957-52607976 Msa1062070:CDS 55.0%
GCCAAAAGGGTCTCTCTAGG+AGG - chr7_2:52607961-52607980 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 52606600 52608314 52606600 ID=Msa1062070;Name=Msa1062070
chr7_2 mRNA 52606600 52608314 52606600 ID=Msa1062070-mRNA-1;Parent=Msa1062070;Name=Msa1062070-mRNA-1;_AED=0.05;_eAED=0.05;_QI=158|1|1|1|1|1|2|291|224
chr7_2 exon 52606600 52607078 52606600 ID=Msa1062070-mRNA-1:exon:9498;Parent=Msa1062070-mRNA-1
chr7_2 exon 52607670 52608314 52607670 ID=Msa1062070-mRNA-1:exon:9499;Parent=Msa1062070-mRNA-1
chr7_2 five_prime_UTR 52606600 52606757 52606600 ID=Msa1062070-mRNA-1:five_prime_utr;Parent=Msa1062070-mRNA-1
chr7_2 CDS 52606758 52607078 52606758 ID=Msa1062070-mRNA-1:cds;Parent=Msa1062070-mRNA-1
chr7_2 CDS 52607670 52608023 52607670 ID=Msa1062070-mRNA-1:cds;Parent=Msa1062070-mRNA-1
chr7_2 three_prime_UTR 52608024 52608314 52608024 ID=Msa1062070-mRNA-1:three_prime_utr;Parent=Msa1062070-mRNA-1
Gene Sequence

>Msa1062070

ATGGCATCAAATAAGGAAGAGGTGAAGGTTTTTGGATTGGTGGAAAGTCCATTTGTAACAAGGGTGGAGATTGCTCTAAAACTGAAGGGAGTTGAATACAAATATGAGCAAGAAAAGGTTGGGAACTTGAGTGATACACTCAAAAAATACAACCCTGTTTACAAGAAAGTTCCTGTATTTGTTCATAATGATAAGCCCATATCAGAGTCCCTTGTGATTCTTGAATATATTGATGAGACTTGGAAACAAAACCCTATCTTGCCTAATGATCCTTATAAAAGAGCCTTGGCACGTTTCTGGTCCAATTTCATAGATGACAAGTGCTCCAATGGTGTTCGGAAAGCTTGTTTCACTCTTGATGAGAAAGAACGTGAGAAAAGTATTGAGGAAACAAAAGAGGCACTTCAATTTCTTGAGAATGAGCTCAAGGACAAATTCTTTGGTGGGGAGGATATTGGCTTTGTTGACATTGCTGCCGTAATCATAGCTTTTTGGTTCCCACCTATACAAGAAGCATTTGGACTGAAATTGTTCACTAGTGAGGAATTTCCAAAGCTTTACAATTGGAGCCAAGAATTCAACAATCATCCAATTGTTAAGGAAAAATTGCCTCCTAGAGAGACCCTTTTGGCATTCTACAAAGCTCGTTATGAAAGTCTTGTTGCTTCAAAATAG

Protein sequence

>Msa1062070

MASNKEEVKVFGLVESPFVTRVEIALKLKGVEYKYEQEKVGNLSDTLKKYNPVYKKVPVFVHNDKPISESLVILEYIDETWKQNPILPNDPYKRALARFWSNFIDDKCSNGVRKACFTLDEKEREKSIEETKEALQFLENELKDKFFGGEDIGFVDIAAVIIAFWFPPIQEAFGLKLFTSEEFPKLYNWSQEFNNHPIVKEKLPPRETLLAFYKARYESLVASK*