Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396320 | XP_003625904.1 | 93.857 | 293 | 4 | 1 | 1 | 279 | 1 | 293 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396320 | sp|Q9LHH7|FOLD2_ARATH | 74.913 | 287 | 58 | 1 | 2 | 274 | 9 | 295 | 2.39e-156 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396320 | B7FKU9 | 93.857 | 293 | 4 | 1 | 1 | 279 | 1 | 293 | 0.0 | 547 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046020 | Msa1396320 | 0.807161 | 5.786866e-50 | -8.615850e-47 |
| Msa0069230 | Msa1396320 | 0.803089 | 4.117092e-49 | -8.615850e-47 |
| Msa0081400 | Msa1396320 | 0.800459 | 1.426946e-48 | -8.615850e-47 |
| Msa0082340 | Msa1396320 | 0.812760 | 3.604333e-51 | -8.615850e-47 |
| Msa1373420 | Msa1396320 | 0.811060 | 8.455702e-51 | -8.615850e-47 |
| Msa1396320 | Msa1411930 | 0.802806 | 4.711423e-49 | -8.615850e-47 |
| Msa1396320 | Msa1414280 | 0.804092 | 2.549610e-49 | -8.615850e-47 |
| Msa1396320 | Msa1424250 | 0.808967 | 2.387499e-50 | -8.615850e-47 |
| Msa1396320 | Msa1452230 | 0.800278 | 1.553598e-48 | -8.615850e-47 |
| Msa0623350 | Msa1396320 | 0.810507 | 1.113696e-50 | -8.615850e-47 |
| Msa0623470 | Msa1396320 | 0.800290 | 1.544455e-48 | -8.615850e-47 |
| Msa0628440 | Msa1396320 | 0.807380 | 5.200028e-50 | -8.615850e-47 |
| Msa0703620 | Msa1396320 | 0.800716 | 1.264788e-48 | -8.615850e-47 |
| Msa0752490 | Msa1396320 | 0.803488 | 3.403468e-49 | -8.615850e-47 |
| Msa0793130 | Msa1396320 | 0.812977 | 3.231256e-51 | -8.615850e-47 |
| Msa0797180 | Msa1396320 | 0.803600 | 3.226098e-49 | -8.615850e-47 |
| Msa0124460 | Msa1396320 | 0.803757 | 2.993746e-49 | -8.615850e-47 |
| Msa0172820 | Msa1396320 | 0.837204 | 5.967141e-57 | -8.615850e-47 |
| Msa0185770 | Msa1396320 | 0.804543 | 2.053577e-49 | -8.615850e-47 |
| Msa0195850 | Msa1396320 | 0.805629 | 1.217083e-49 | -8.615850e-47 |
| Msa0198280 | Msa1396320 | 0.808837 | 2.545054e-50 | -8.615850e-47 |
| Msa0212290 | Msa1396320 | 0.817337 | 3.474523e-52 | -8.615850e-47 |
| Msa1225280 | Msa1396320 | 0.815066 | 1.118471e-51 | -8.615850e-47 |
| Msa1244380 | Msa1396320 | 0.807830 | 4.173891e-50 | -8.615850e-47 |
| Msa1263600 | Msa1396320 | 0.812175 | 4.839568e-51 | -8.615850e-47 |
| Msa1277270 | Msa1396320 | 0.801837 | 7.457361e-49 | -8.615850e-47 |
| Msa0388790 | Msa1396320 | 0.808608 | 2.848958e-50 | -8.615850e-47 |
| Msa0437820 | Msa1396320 | 0.801828 | 7.488511e-49 | -8.615850e-47 |
| Msa0450920 | Msa1396320 | 0.809221 | 2.105966e-50 | -8.615850e-47 |
| Msa0464980 | Msa1396320 | 0.800778 | 1.228654e-48 | -8.615850e-47 |
| Msa0474290 | Msa1396320 | 0.814145 | 1.788088e-51 | -8.615850e-47 |
| Msa1083620 | Msa1396320 | 0.806875 | 6.651761e-50 | -8.615850e-47 |
| Msa0275260 | Msa1396320 | 0.811629 | 6.361774e-51 | -8.615850e-47 |
| Msa0296490 | Msa1396320 | 0.800523 | 1.384582e-48 | -8.615850e-47 |
| Msa0315720 | Msa1396320 | 0.803176 | 3.950141e-49 | -8.615850e-47 |
| Msa0315760 | Msa1396320 | 0.813556 | 2.410775e-51 | -8.615850e-47 |
| Msa0327990 | Msa1396320 | 0.804708 | 1.897212e-49 | -8.615850e-47 |
| Msa0358750 | Msa1396320 | 0.820138 | 8.034863e-53 | -8.615850e-47 |
| Msa1130850 | Msa1396320 | 0.800575 | 1.351428e-48 | -8.615850e-47 |
| Msa1130910 | Msa1396320 | 0.802862 | 4.586142e-49 | -8.615850e-47 |
| Msa1163130 | Msa1396320 | 0.806910 | 6.538534e-50 | -8.615850e-47 |
| Msa1166030 | Msa1396320 | 0.995627 | 3.393563e-218 | -8.615850e-47 |
| Msa1175740 | Msa1396320 | 0.800581 | 1.347763e-48 | -8.615850e-47 |
| Msa1206510 | Msa1396320 | 0.809424 | 1.905290e-50 | -8.615850e-47 |
| Msa1223520 | Msa1396320 | 0.801439 | 8.999467e-49 | -8.615850e-47 |
| Msa0498250 | Msa1396320 | 0.824789 | 6.671047e-54 | -8.615850e-47 |
| Msa0518720 | Msa1396320 | 0.816799 | 4.590145e-52 | -8.615850e-47 |
| Msa0573940 | Msa1396320 | 0.811638 | 6.333755e-51 | -8.615850e-47 |
| Msa0578400 | Msa1396320 | 0.805259 | 1.455379e-49 | -8.615850e-47 |
| Msa0581200 | Msa1396320 | 0.990837 | 1.433245e-184 | -8.615850e-47 |
| Msa0866320 | Msa1396320 | 0.811643 | 6.319233e-51 | -8.615850e-47 |
| Msa0906180 | Msa1396320 | 0.820584 | 6.349461e-53 | -8.615850e-47 |
| Msa0930850 | Msa1396320 | 0.803952 | 2.726343e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396320 | MtrunA17_Chr7g0269111 | 93.857 | 293 | 4 | 1 | 1 | 279 | 1 | 293 | 0.0 | 547 |
| Msa1396320 | MtrunA17_Chr7g0247061 | 62.807 | 285 | 92 | 1 | 4 | 274 | 62 | 346 | 7.64e-130 | 372 |
| Msa1396320 | MtrunA17_Chr1g0160161 | 58.537 | 287 | 105 | 1 | 2 | 274 | 70 | 356 | 6.22e-116 | 337 |
| Msa1396320 | MtrunA17_Chr3g0078501 | 45.810 | 179 | 83 | 1 | 2 | 166 | 73 | 251 | 2.69e-51 | 169 |
| Msa1396320 | MtrunA17_Chr3g0078511 | 61.667 | 60 | 22 | 1 | 217 | 276 | 1 | 59 | 1.60e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396320 | AT3G12290.1 | 74.913 | 287 | 58 | 1 | 2 | 274 | 9 | 295 | 2.43e-157 | 440 |
| Msa1396320 | AT4G00620.1 | 62.718 | 287 | 93 | 1 | 2 | 274 | 69 | 355 | 1.09e-129 | 372 |
| Msa1396320 | AT2G38660.1 | 58.596 | 285 | 104 | 1 | 4 | 274 | 65 | 349 | 8.47e-116 | 337 |
| Msa1396320 | AT2G38660.3 | 58.596 | 285 | 104 | 1 | 4 | 274 | 65 | 349 | 8.47e-116 | 337 |
| Msa1396320 | AT2G38660.4 | 56.126 | 253 | 97 | 1 | 4 | 242 | 65 | 317 | 5.61e-97 | 288 |
| Msa1396320 | AT4G00600.1 | 52.265 | 287 | 87 | 2 | 2 | 274 | 55 | 305 | 2.16e-96 | 286 |
| Msa1396320 | AT2G38660.2 | 55.367 | 177 | 65 | 1 | 4 | 166 | 65 | 241 | 1.30e-63 | 200 |
| Msa1396320 | AT2G38660.7 | 49.495 | 99 | 50 | 0 | 4 | 102 | 65 | 163 | 1.68e-26 | 102 |
| Msa1396320 | AT2G38660.6 | 49.495 | 99 | 50 | 0 | 4 | 102 | 65 | 163 | 1.68e-26 | 102 |
| Msa1396320 | AT2G38660.5 | 49.495 | 99 | 50 | 0 | 4 | 102 | 65 | 163 | 1.68e-26 | 102 |
| Msa1396320 | AT2G38660.8 | 49.495 | 99 | 50 | 0 | 4 | 102 | 65 | 163 | 1.68e-26 | 102 |
Find 94 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTATGTGCTATACTTTAT+TGG | 0.095499 | tig0022022:-22742 | Msa1396320:three_prime_UTR |
| TAACTAGCGCATGGACATTT+TGG | 0.171159 | tig0022022:+22108 | None:intergenic |
| CGAAAAGTTAGTATATTTAT+AGG | 0.211223 | tig0022022:-26953 | None:intergenic |
| TTTCTCTTCATTTATATGTT+TGG | 0.237367 | tig0022022:+26283 | None:intergenic |
| TTCTCTTCATTTATATGTTT+GGG | 0.275577 | tig0022022:+26284 | None:intergenic |
| GAGAAAAGCTTGCGCTGATT+TGG | 0.292482 | tig0022022:-26515 | Msa1396320:CDS |
| GGTTGGATTACTCCTGTTCC+TGG | 0.334532 | tig0022022:-23027 | Msa1396320:CDS |
| CTTTATTGGAATATTGCTTT+TGG | 0.335457 | tig0022022:-22728 | Msa1396320:three_prime_UTR |
| CACGGCTTTGCCGTCAATTA+CGG | 0.340063 | tig0022022:+26761 | None:intergenic |
| AGAAAAGCTTGCGCTGATTT+GGG | 0.341343 | tig0022022:-26514 | Msa1396320:CDS |
| AGCAACATTGTGACTGTCAT+TGG | 0.347400 | tig0022022:+22994 | None:intergenic |
| CAACTAGGAAGGCAGGTTAT+AGG | 0.352622 | tig0022022:-23092 | Msa1396320:CDS |
| GAGGAAGCATCTAAAGTTGC+TGG | 0.352957 | tig0022022:-23048 | Msa1396320:CDS |
| CATCATCATCTTCAGGTTGC+TGG | 0.354269 | tig0022022:-26595 | Msa1396320:intron |
| GAAAAGTTAGTATATTTATA+GGG | 0.359636 | tig0022022:-26952 | None:intergenic |
| TTCAAAAGCAGTAATGAAAC+TGG | 0.393159 | tig0022022:+23792 | None:intergenic |
| AGCATTTACTTTGGGAGTGC+AGG | 0.399690 | tig0022022:+26163 | None:intergenic |
| TCAGCTTCGGAAATTTGTTC+AGG | 0.400499 | tig0022022:+26466 | None:intergenic |
| GCTTCACGTATGATGTCTTC+TGG | 0.403074 | tig0022022:+23726 | None:intergenic |
| TTATATGTGTGCAGGTATAT+TGG | 0.405081 | tig0022022:-26321 | Msa1396320:intron |
| GAGAGGGTCTCTGCCTTTCA+TGG | 0.418461 | tig0022022:+26193 | None:intergenic |
| ACGTATTCTATAAAATTGTA+AGG | 0.419672 | tig0022022:-22835 | Msa1396320:three_prime_UTR |
| AAGGCAGGTTATAGGCTTGT+TGG | 0.427901 | tig0022022:-23084 | Msa1396320:CDS |
| TATAACCTGCCTTCCTAGTT+GGG | 0.428149 | tig0022022:+23094 | None:intergenic |
| TACAGAGGGGAAGAAGAAAT+AGG | 0.431509 | tig0022022:+22634 | None:intergenic |
| CTATAACCTGCCTTCCTAGT+TGG | 0.431628 | tig0022022:+23093 | None:intergenic |
| ATGCTTGATTACTTCAGCTT+CGG | 0.434782 | tig0022022:+26453 | None:intergenic |
| CGCAACCTTCTCCGATCAAA+TGG | 0.435703 | tig0022022:-26787 | Msa1396320:exon |
| TTTCTTAGATCAAGGGAAGT+TGG | 0.440672 | tig0022022:-23167 | Msa1396320:intron |
| GTGTAAGTATAAAGGGGAAA+AGG | 0.444068 | tig0022022:-23851 | Msa1396320:intron |
| AATGTTGCTGAAGAATACTT+TGG | 0.453034 | tig0022022:-22980 | Msa1396320:CDS |
| GGACCTACACCTCCAGGAAC+AGG | 0.460733 | tig0022022:+23015 | None:intergenic |
| GGACTTGCAGTGGTGATAGT+AGG | 0.466821 | tig0022022:-26574 | Msa1396320:CDS |
| AATTACGGTGGCCATTTGAT+CGG | 0.474921 | tig0022022:+26776 | None:intergenic |
| AGCCTTGAGAAGGATGTTGA+TGG | 0.475914 | tig0022022:-26245 | Msa1396320:CDS |
| CGTATCCTCTCTGAGAAATA+CGG | 0.476330 | tig0022022:-26702 | Msa1396320:CDS |
| AGTGACTCACCATGTACATT+GGG | 0.481285 | tig0022022:+26409 | None:intergenic |
| AGAAGAAATAGGTTATATAC+AGG | 0.485771 | tig0022022:+22645 | None:intergenic |
| GATATTGTTATTGCAGCAGC+AGG | 0.488835 | tig0022022:-23702 | Msa1396320:CDS |
| ACATCTATTACTGCAGCTCC+AGG | 0.491120 | tig0022022:+23138 | None:intergenic |
| ACTCCTGTTCCTGGAGGTGT+AGG | 0.496506 | tig0022022:-23018 | Msa1396320:CDS |
| TGTTATTGCAGCAGCAGGAC+AGG | 0.498986 | tig0022022:-23697 | Msa1396320:CDS |
| CGTATTTCTCAGAGAGGATA+CGG | 0.500459 | tig0022022:+26703 | None:intergenic |
| GTCACGTGGCGCAAATTAAG+TGG | 0.508820 | tig0022022:-22052 | Msa1396320:three_prime_UTR |
| ATCGGCAAGCTTGCCATGAA+AGG | 0.510148 | tig0022022:-26206 | Msa1396320:CDS |
| GGCTTTCATCCTTTGAACAT+CGG | 0.514273 | tig0022022:-26224 | Msa1396320:CDS |
| TCATTTATATGTTTGGGCAG+TGG | 0.514441 | tig0022022:+26290 | None:intergenic |
| TGTAAGTATAAAGGGGAAAA+GGG | 0.521694 | tig0022022:-23850 | Msa1396320:intron |
| GACTGAAATCAGCCTTGAGA+AGG | 0.525446 | tig0022022:-26255 | Msa1396320:CDS |
| GACTTGCAGTGGTGATAGTA+GGG | 0.525562 | tig0022022:-26573 | Msa1396320:CDS |
| GGGAAAAGGGCAGTTGTGGT+TGG | 0.536435 | tig0022022:-23837 | Msa1396320:CDS |
| TTGGTAGAAGCAACATAGTC+GGG | 0.537576 | tig0022022:-23818 | Msa1396320:CDS |
| GCATTTACTTTGGGAGTGCA+GGG | 0.540237 | tig0022022:+26164 | None:intergenic |
| AGCAGCAGGACAGGCAAAGA+TGG | 0.543320 | tig0022022:-23688 | Msa1396320:intron |
| GGTGGCCATTTGATCGGAGA+AGG | 0.543368 | tig0022022:+26782 | None:intergenic |
| GCAAGCTTGCCGATGTTCAA+AGG | 0.547348 | tig0022022:+26215 | None:intergenic |
| CTTCGGAAATTTGTTCAGGA+AGG | 0.547633 | tig0022022:+26470 | None:intergenic |
| AGATCGGATTGTTTGTGCCA+CGG | 0.550515 | tig0022022:+26743 | None:intergenic |
| GATGACCCAACTAGGAAGGC+AGG | 0.556133 | tig0022022:-23099 | Msa1396320:CDS |
| AAGCATCTAAAGTTGCTGGT+TGG | 0.557994 | tig0022022:-23044 | Msa1396320:CDS |
| ATTCTGTTGATGACCCAACT+AGG | 0.559417 | tig0022022:-23107 | Msa1396320:CDS |
| GTCATTGGACCTACACCTCC+AGG | 0.563478 | tig0022022:+23009 | None:intergenic |
| AAGTGACTCACCATGTACAT+TGG | 0.565737 | tig0022022:+26408 | None:intergenic |
| AAAGGGGAAAAGGGCAGTTG+TGG | 0.567603 | tig0022022:-23841 | Msa1396320:intron |
| TCAGGTTGCTGGACTTGCAG+TGG | 0.572590 | tig0022022:-26584 | Msa1396320:intron |
| CAAATGGCCACCGTAATTGA+CGG | 0.574064 | tig0022022:-26771 | Msa1396320:CDS |
| GTTGGTAGAAGCAACATAGT+CGG | 0.574369 | tig0022022:-23819 | Msa1396320:CDS |
| AGCCATCAACATCCTTCTCA+AGG | 0.583414 | tig0022022:+26243 | None:intergenic |
| CCTCGTCGGCGATTTCAGAT+CGG | 0.583482 | tig0022022:+26727 | None:intergenic |
| AAGGGAAGTTGGATAAAACC+TGG | 0.587815 | tig0022022:-23156 | Msa1396320:CDS |
| TGCGCTAGTTAACTAGCGCA+TGG | 0.589831 | tig0022022:+22099 | None:intergenic |
| TGTTGATGACCCAACTAGGA+AGG | 0.598349 | tig0022022:-23103 | Msa1396320:CDS |
| GGAGTGCAGGGAACAAAGAG+AGG | 0.599700 | tig0022022:+26176 | None:intergenic |
| CGTATTCTATAAAATTGTAA+GGG | 0.603359 | tig0022022:-22834 | Msa1396320:three_prime_UTR |
| TTCTATAAAATTGTAAGGGT+AGG | 0.607410 | tig0022022:-22830 | Msa1396320:three_prime_UTR |
| TAGCACATACAGAGAACAAG+AGG | 0.609611 | tig0022022:+22753 | None:intergenic |
| GGCGCAAATTAAGTGGCGCA+AGG | 0.612096 | tig0022022:-22045 | Msa1396320:three_prime_UTR |
| GGCTTTGCCGTCAATTACGG+TGG | 0.613849 | tig0022022:+26764 | None:intergenic |
| AACGCTGATCCCAATGTACA+TGG | 0.616668 | tig0022022:-26418 | Msa1396320:intron |
| TTTGTGAGAGTTAAATTGGG+TGG | 0.624251 | tig0022022:-26880 | Msa1396320:five_prime_UTR |
| CGTAATTGACGGCAAAGCCG+TGG | 0.631640 | tig0022022:-26760 | Msa1396320:CDS |
| CCGATCTGAAATCGCCGACG+AGG | 0.637149 | tig0022022:-26727 | Msa1396320:CDS |
| TGGATTACTCCTGTTCCTGG+AGG | 0.641207 | tig0022022:-23024 | Msa1396320:CDS |
| CCTTGCCGTATTTCTCAGAG+AGG | 0.642605 | tig0022022:+26697 | None:intergenic |
| CCTCTCTGAGAAATACGGCA+AGG | 0.642652 | tig0022022:-26697 | Msa1396320:intron |
| GCAAATTAAGTGGCGCAAGG+TGG | 0.643864 | tig0022022:-22042 | Msa1396320:three_prime_UTR |
| GGAGCTGCAGTAATAGATGT+CGG | 0.646250 | tig0022022:-23135 | Msa1396320:CDS |
| ACTTGTGTGTGAATGAGCAA+TGG | 0.673957 | tig0022022:+23752 | None:intergenic |
| AGAGAGGATACGGACCTCGT+CGG | 0.680772 | tig0022022:+26713 | None:intergenic |
| GAGTGCAGGGAACAAAGAGA+GGG | 0.687238 | tig0022022:+26177 | None:intergenic |
| AGCACATACAGAGAACAAGA+GGG | 0.699285 | tig0022022:+22754 | None:intergenic |
| AATGCGCAATTTAAGTCACG+TGG | 0.705378 | tig0022022:-22066 | Msa1396320:three_prime_UTR |
| GCACATACAGAGAACAAGAG+GGG | 0.710443 | tig0022022:+22755 | None:intergenic |
| TCTTAGCAGAAACTGAACTG+AGG | 0.714720 | tig0022022:+22865 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATGACATTTTTTATA+GGG | + | tig0022022:22078-22097 | None:intergenic | 10.0% |
| !!! | AATTAGTTTATAATTATGAA+TGG | - | tig0022022:23032-23051 | Msa1396320:CDS | 10.0% |
| !!! | GTTTAATATTATATTTTCAT+AGG | - | tig0022022:25487-25506 | Msa1396320:intron | 10.0% |
| !!! | TTCCTTTAATTTTAAATAAA+AGG | - | tig0022022:26067-26086 | Msa1396320:intron | 10.0% |
| !!! | TCCTTTAATTTTAAATAAAA+GGG | - | tig0022022:26068-26087 | Msa1396320:intron | 10.0% |
| !!! | GTAATTATGACATTTTTTAT+AGG | + | tig0022022:22079-22098 | None:intergenic | 15.0% |
| !!! | TCTTTTTTACTGTATTTATT+TGG | - | tig0022022:22632-22651 | Msa1396320:intron | 15.0% |
| !! | AAAAAATCAATTAAGATTAC+TGG | - | tig0022022:23085-23104 | Msa1396320:CDS | 15.0% |
| !! | AAAAATCAATTAAGATTACT+GGG | - | tig0022022:23086-23105 | Msa1396320:CDS | 15.0% |
| !! | TTAAATACACTATTTAAAGA+AGG | + | tig0022022:25064-25083 | None:intergenic | 15.0% |
| !!! | TTTTTAAAAAAACATAGACT+TGG | + | tig0022022:25365-25384 | None:intergenic | 15.0% |
| !!! | TTTTTGTCAATTTTCAAATT+TGG | - | tig0022022:25405-25424 | Msa1396320:intron | 15.0% |
| !!! | TCCCTTTTATTTAAAATTAA+AGG | + | tig0022022:26072-26091 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTGAGAGTTAAAT+TGG | - | tig0022022:22103-22122 | Msa1396320:three_prime_UTR | 20.0% |
| !!! | TTTTTTGTGAGAGTTAAATT+GGG | - | tig0022022:22104-22123 | Msa1396320:three_prime_UTR | 20.0% |
| !! | TTCTCTTCATTTATATGTTT+GGG | + | tig0022022:22706-22725 | None:intergenic | 20.0% |
| !! | TTTCTCTTCATTTATATGTT+TGG | + | tig0022022:22707-22726 | None:intergenic | 20.0% |
| !! | ATTATGAATGGCATAAAAAA+TGG | - | tig0022022:23044-23063 | Msa1396320:CDS | 20.0% |
| !! | AAAATCAATTAAGATTACTG+GGG | - | tig0022022:23087-23106 | Msa1396320:CDS | 20.0% |
| !! | TAAAAAAATAAACATGTGAG+TGG | + | tig0022022:23330-23349 | None:intergenic | 20.0% |
| !!! | TTTTGAACTACTTTCTTTAA+AGG | - | tig0022022:23803-23822 | Msa1396320:CDS | 20.0% |
| !!! | TTTTAAGTGATTAAACTTTG+CGG | - | tig0022022:24959-24978 | Msa1396320:intron | 20.0% |
| !!! | ACGCATAAATAGTTTTTAAA+TGG | - | tig0022022:25454-25473 | Msa1396320:intron | 20.0% |
| !!! | AAATAGTTTTTAAATGGTAG+CGG | - | tig0022022:25460-25479 | Msa1396320:intron | 20.0% |
| !! | AAATGAATGATATATAAGAG+TGG | - | tig0022022:25554-25573 | Msa1396320:intron | 20.0% |
| !!! | AATTTTCTAAAACTGTGTTT+TGG | + | tig0022022:25721-25740 | None:intergenic | 20.0% |
| !!! | ATTTACTTTTTCTTAGATCA+AGG | - | tig0022022:25812-25831 | Msa1396320:intron | 20.0% |
| !!! | TTTACTTTTTCTTAGATCAA+GGG | - | tig0022022:25813-25832 | Msa1396320:intron | 20.0% |
| !! | ACGTATTCTATAAAATTGTA+AGG | - | tig0022022:26152-26171 | Msa1396320:intron | 20.0% |
| !! | CGTATTCTATAAAATTGTAA+GGG | - | tig0022022:26153-26172 | Msa1396320:intron | 20.0% |
| !!! | TTCTTCTTTTTATAACAAAG+AGG | + | tig0022022:26389-26408 | None:intergenic | 20.0% |
| !!! | TTCTTCTTTTTATAACAAAG+AGG | + | tig0022022:26389-26408 | None:intergenic | 20.0% |
| !!! | TTCTTCTTTTTATAACAAAG+AGG | + | tig0022022:26389-26408 | None:intergenic | 20.0% |
| ! | TTCAACTCAATTCTATCAAT+AGG | - | tig0022022:22869-22888 | Msa1396320:three_prime_UTR | 25.0% |
| ! | TATCAATAGGAAAATAATCC+AGG | - | tig0022022:22882-22901 | Msa1396320:three_prime_UTR | 25.0% |
| !! | TTTTGCTAGCTAAATTAGAA+CGG | - | tig0022022:23401-23420 | Msa1396320:intron | 25.0% |
| ! | TTAAGTGATTAAACTTTGCA+GGG | + | tig0022022:23907-23926 | None:intergenic | 25.0% |
| ! | TTTAAGTGATTAAACTTTGC+AGG | + | tig0022022:24960-24979 | None:intergenic | 25.0% |
| ! | ACAACATCAAAATCATATTC+CGG | - | tig0022022:24597-24616 | Msa1396320:intron | 25.0% |
| ! | TTTAAGTGATTAAACTTTGC+GGG | - | tig0022022:24960-24979 | Msa1396320:intron | 25.0% |
| !! | TGTCAATTTTCAAATTTGGA+TGG | - | tig0022022:25409-25428 | Msa1396320:intron | 25.0% |
| ! | TTAGCTCAATATAATTGATG+TGG | + | tig0022022:25536-25555 | None:intergenic | 25.0% |
| ! | TTGAGAAGATTAATAACAGT+GGG | + | tig0022022:25779-25798 | None:intergenic | 25.0% |
| ! | ATTGAGAAGATTAATAACAG+TGG | + | tig0022022:25780-25799 | None:intergenic | 25.0% |
| ! | TTCTATAAAATTGTAAGGGT+AGG | - | tig0022022:26157-26176 | Msa1396320:intron | 25.0% |
| !! | CTTTATTGGAATATTGCTTT+TGG | - | tig0022022:26259-26278 | Msa1396320:CDS | 25.0% |
| ! | AGAAGAAATAGGTTATATAC+AGG | + | tig0022022:26345-26364 | None:intergenic | 25.0% |
| ! | ATAAAGTATAGCACATACTT+GGG | + | tig0022022:26457-26476 | None:intergenic | 25.0% |
| ! | AATAAAGTATAGCACATACT+TGG | + | tig0022022:26458-26477 | None:intergenic | 25.0% |
| ! | AAGTATGTGCTATACTTTAT+TGG | - | tig0022022:26457-26476 | Msa1396320:CDS | 25.0% |
| !! | CTTTATTGGAATATTGCTTT+TGG | - | tig0022022:26259-26278 | Msa1396320:CDS | 25.0% |
| ! | AGAAGAAATAGGTTATATAC+AGG | + | tig0022022:26345-26364 | None:intergenic | 25.0% |
| ! | ATAAAGTATAGCACATACTT+GGG | + | tig0022022:26457-26476 | None:intergenic | 25.0% |
| ! | AATAAAGTATAGCACATACT+TGG | + | tig0022022:26458-26477 | None:intergenic | 25.0% |
| ! | AAGTATGTGCTATACTTTAT+TGG | - | tig0022022:26457-26476 | Msa1396320:CDS | 25.0% |
| !! | CTTTATTGGAATATTGCTTT+TGG | - | tig0022022:26259-26278 | Msa1396320:CDS | 25.0% |
| ! | AGAAGAAATAGGTTATATAC+AGG | + | tig0022022:26345-26364 | None:intergenic | 25.0% |
| AAGATGATGAAGGAATGATT+GGG | + | tig0022022:22323-22342 | None:intergenic | 30.0% | |
| TTATATGTGTGCAGGTATAT+TGG | - | tig0022022:22666-22685 | Msa1396320:three_prime_UTR | 30.0% | |
| !! | GAATGAAGAGCATTTACTTT+GGG | + | tig0022022:22835-22854 | None:intergenic | 30.0% |
| !! | AGAATGAAGAGCATTTACTT+TGG | + | tig0022022:22836-22855 | None:intergenic | 30.0% |
| ! | CTCTTCATTCTCAAATCTTT+TGG | - | tig0022022:22845-22864 | Msa1396320:three_prime_UTR | 30.0% |
| GCTCTGTTTGGTAAAAATAA+TGG | - | tig0022022:22904-22923 | Msa1396320:three_prime_UTR | 30.0% | |
| !! | AAGCTAACTATAGTTGATAG+CGG | - | tig0022022:22962-22981 | Msa1396320:CDS | 30.0% |
| CTGATTGAATTTGTAGTGTT+TGG | - | tig0022022:22994-23013 | Msa1396320:CDS | 30.0% | |
| GTAGTGTTTGGTAAAATTAG+CGG | - | tig0022022:23006-23025 | Msa1396320:CDS | 30.0% | |
| TAGTGTTTGGTAAAATTAGC+GGG | - | tig0022022:23007-23026 | Msa1396320:CDS | 30.0% | |
| TGTCTTATAATCTCGTATGT+TGG | + | tig0022022:23256-23275 | None:intergenic | 30.0% | |
| TAAGACATAAGCTATAAGCT+CGG | - | tig0022022:23269-23288 | Msa1396320:intron | 30.0% | |
| TTTGCTAGCTAAATTAGAAC+GGG | - | tig0022022:23402-23421 | Msa1396320:intron | 30.0% | |
| ! | TTAATGCACAGTTTTCATTG+AGG | - | tig0022022:23486-23505 | Msa1396320:intron | 30.0% |
| TAAGTGATTAAACTTTGCAG+GGG | + | tig0022022:23906-23925 | None:intergenic | 30.0% | |
| !!! | ATTTTGCTAATTTGATGACG+TGG | + | tig0022022:23960-23979 | None:intergenic | 30.0% |
| ACGTCATCAAATTAGCAAAA+TGG | - | tig0022022:23959-23978 | Msa1396320:intron | 30.0% | |
| ATCAAATTAGCAAAATGGCA+TGG | - | tig0022022:23964-23983 | Msa1396320:intron | 30.0% | |
| TCAAATTAGCAAAATGGCAT+GGG | - | tig0022022:23965-23984 | Msa1396320:intron | 30.0% | |
| AGAAAAGAAAATGATAGCAG+GGG | + | tig0022022:24048-24067 | None:intergenic | 30.0% | |
| GAGAAAAGAAAATGATAGCA+GGG | + | tig0022022:24049-24068 | None:intergenic | 30.0% | |
| AGAGAAAAGAAAATGATAGC+AGG | + | tig0022022:24050-24069 | None:intergenic | 30.0% | |
| TACTGTATTGTAGATTCAAG+AGG | + | tig0022022:24186-24205 | None:intergenic | 30.0% | |
| TTCTTTGCAAGATGAATTAG+TGG | - | tig0022022:24258-24277 | Msa1396320:intron | 30.0% | |
| AGGAAGAAAATTGAAGAACA+CGG | - | tig0022022:24334-24353 | Msa1396320:intron | 30.0% | |
| ! | TCATTTTGCACAATCATCTT+CGG | + | tig0022022:24702-24721 | None:intergenic | 30.0% |
| AGATGATTGTGCAAAATGAA+TGG | - | tig0022022:24703-24722 | Msa1396320:intron | 30.0% | |
| !! | GTAAAACAGATTGATGATGA+TGG | - | tig0022022:24774-24793 | Msa1396320:intron | 30.0% |
| CCATGATTGAAGAATAAACA+TGG | + | tig0022022:24815-24834 | None:intergenic | 30.0% | |
| CCATGTTTATTCTTCAATCA+TGG | - | tig0022022:24812-24831 | Msa1396320:intron | 30.0% | |
| GAGAAAGAAGATGAAATCAA+GGG | - | tig0022022:24853-24872 | Msa1396320:intron | 30.0% | |
| ATTTCACAGACAAACATGAA+AGG | + | tig0022022:24888-24907 | None:intergenic | 30.0% | |
| TTAAGTGATTAAACTTTGCG+GGG | - | tig0022022:24961-24980 | Msa1396320:intron | 30.0% | |
| ! | TACATATGCTACTTGTATTC+AGG | - | tig0022022:25086-25105 | Msa1396320:intron | 30.0% |
| TGTAAGTATAAAGGGGAAAA+GGG | - | tig0022022:25137-25156 | Msa1396320:intron | 30.0% | |
| TTCAAAAGCAGTAATGAAAC+TGG | + | tig0022022:25198-25217 | None:intergenic | 30.0% | |
| ACAAAAACTGCACATATACT+AGG | + | tig0022022:25392-25411 | None:intergenic | 30.0% | |
| AAATTTGGATGGTTCTTTCT+TGG | - | tig0022022:25420-25439 | Msa1396320:intron | 30.0% | |
| CAATATAATTGATGTGGAAC+TGG | + | tig0022022:25530-25549 | None:intergenic | 30.0% | |
| !!! | ACTCAAGTTTTAAACTTGAG+TGG | - | tig0022022:25587-25606 | Msa1396320:intron | 30.0% |
| AATATCATTGAGAGCAACAA+CGG | + | tig0022022:25656-25675 | None:intergenic | 30.0% | |
| GATATTCCTATAAACGACAT+TGG | - | tig0022022:25670-25689 | Msa1396320:intron | 30.0% | |
| ! | CATATACCAATGTCGTTTAT+AGG | + | tig0022022:25679-25698 | None:intergenic | 30.0% |
| AATGTTGCTGAAGAATACTT+TGG | - | tig0022022:26007-26026 | Msa1396320:intron | 30.0% | |
| CTGTATGTGCTATACTTTAT+TGG | - | tig0022022:26245-26264 | Msa1396320:CDS | 30.0% | |
| ! | TTTTATAACAAAGAGGTTGC+AGG | + | tig0022022:26382-26401 | None:intergenic | 30.0% |
| ! | TTTTATAACAAAGAGGTTGC+AGG | + | tig0022022:26382-26401 | None:intergenic | 30.0% |
| ! | TTTTATAACAAAGAGGTTGC+AGG | + | tig0022022:26382-26401 | None:intergenic | 30.0% |
| TTTGTGAGAGTTAAATTGGG+TGG | - | tig0022022:22107-22126 | Msa1396320:three_prime_UTR | 35.0% | |
| GAAGATGATGAAGGAATGAT+TGG | + | tig0022022:22324-22343 | None:intergenic | 35.0% | |
| TCATCATCATCATCATCTTC+AGG | - | tig0022022:22385-22404 | Msa1396320:intron | 35.0% | |
| ATGCTTGATTACTTCAGCTT+CGG | + | tig0022022:22537-22556 | None:intergenic | 35.0% | |
| !! | GTTTGTTGTTATATGTGTGC+AGG | - | tig0022022:22658-22677 | Msa1396320:three_prime_UTR | 35.0% |
| TCATTTATATGTTTGGGCAG+TGG | + | tig0022022:22700-22719 | None:intergenic | 35.0% | |
| AAAATAATCCAGGCTCTGTT+TGG | - | tig0022022:22892-22911 | Msa1396320:three_prime_UTR | 35.0% | |
| !! | TATTTTTACCAAACAGAGCC+TGG | + | tig0022022:22903-22922 | None:intergenic | 35.0% |
| !! | GCTCACAAACTAGCTTATTT+TGG | - | tig0022022:22930-22949 | Msa1396320:exon | 35.0% |
| !!! | CTAGCTTATTTTGGATGACT+TGG | - | tig0022022:22939-22958 | Msa1396320:exon | 35.0% |
| GAAAGTGACAATTACCAAAC+AGG | - | tig0022022:23219-23238 | Msa1396320:intron | 35.0% | |
| TAGCTAAATTAGAACGGGAT+AGG | - | tig0022022:23407-23426 | Msa1396320:intron | 35.0% | |
| GAAAACTGTGCATTAATGAC+AGG | + | tig0022022:23482-23501 | None:intergenic | 35.0% | |
| TGTAATTGTGCGTTCTTGAT+CGG | + | tig0022022:23777-23796 | None:intergenic | 35.0% | |
| ! | AAAAAGGATTAGCGATTGCA+GGG | + | tig0022022:24989-25008 | None:intergenic | 35.0% |
| ! | AAAAAAGGATTAGCGATTGC+AGG | + | tig0022022:24988-25007 | None:intergenic | 35.0% |
| ATACTTTGCTTAGTCAACGA+GGG | + | tig0022022:24005-24024 | None:intergenic | 35.0% | |
| AAGAAGGAAGAAGAAGGTAA+TGG | + | tig0022022:24088-24107 | None:intergenic | 35.0% | |
| AGAAGAAAGAAGGAAGAAGA+AGG | + | tig0022022:24094-24113 | None:intergenic | 35.0% | |
| CAAAGAATCAAATCCACACT+TGG | + | tig0022022:24245-24264 | None:intergenic | 35.0% | |
| TTGCAAGATGAATTAGTGGT+TGG | - | tig0022022:24262-24281 | Msa1396320:intron | 35.0% | |
| TGCAAGATGAATTAGTGGTT+GGG | - | tig0022022:24263-24282 | Msa1396320:intron | 35.0% | |
| !! | TGGTTGGGTTTTGATGTTTT+GGG | - | tig0022022:24278-24297 | Msa1396320:intron | 35.0% |
| !!! | CTTTCGATGATGTTGTTTTG+CGG | + | tig0022022:24626-24645 | None:intergenic | 35.0% |
| ! | TGAAATCGTGTTGCAGTTTT+CGG | - | tig0022022:24651-24670 | Msa1396320:intron | 35.0% |
| TGTGCAAAATGAATGGTGAA+TGG | - | tig0022022:24710-24729 | Msa1396320:intron | 35.0% | |
| GTGCAAAATGAATGGTGAAT+GGG | - | tig0022022:24711-24730 | Msa1396320:intron | 35.0% | |
| GGTGTAAAACAGATTGATGA+TGG | - | tig0022022:24750-24769 | Msa1396320:intron | 35.0% | |
| GGAGAAAGAAGATGAAATCA+AGG | - | tig0022022:24852-24871 | Msa1396320:intron | 35.0% | |
| !! | CAGATGTTAATTTGATGACG+TGG | - | tig0022022:24908-24927 | Msa1396320:intron | 35.0% |
| TAAGTGATTAAACTTTGCGG+GGG | - | tig0022022:24962-24981 | Msa1396320:intron | 35.0% | |
| ! | AAAAAAGGATTAGCGATTGC+AGG | - | tig0022022:24988-25007 | Msa1396320:intron | 35.0% |
| ! | AAAAAGGATTAGCGATTGCA+GGG | - | tig0022022:24989-25008 | Msa1396320:intron | 35.0% |
| ! | TTTTTCGTCCCTGTAAATAG+GGG | + | tig0022022:25031-25050 | None:intergenic | 35.0% |
| ! | GTTTTTCGTCCCTGTAAATA+GGG | + | tig0022022:25032-25051 | None:intergenic | 35.0% |
| ! | TGTTTTTCGTCCCTGTAAAT+AGG | + | tig0022022:25033-25052 | None:intergenic | 35.0% |
| ACGAAGTGGTGTAAGTATAA+AGG | - | tig0022022:25128-25147 | Msa1396320:intron | 35.0% | |
| CGAAGTGGTGTAAGTATAAA+GGG | - | tig0022022:25129-25148 | Msa1396320:intron | 35.0% | |
| GAAGTGGTGTAAGTATAAAG+GGG | - | tig0022022:25130-25149 | Msa1396320:intron | 35.0% | |
| GTGTAAGTATAAAGGGGAAA+AGG | - | tig0022022:25136-25155 | Msa1396320:intron | 35.0% | |
| TAAACTTGAGTGGAGATATG+CGG | - | tig0022022:25597-25616 | Msa1396320:intron | 35.0% | |
| !!! | TAACAGTGGGCTATATTTTC+TGG | + | tig0022022:25766-25785 | None:intergenic | 35.0% |
| TTTCTTAGATCAAGGGAAGT+TGG | - | tig0022022:25820-25839 | Msa1396320:intron | 35.0% | |
| ! | TGTTGGAGATGTAGATTTTG+AGG | - | tig0022022:25920-25939 | Msa1396320:intron | 35.0% |
| AATTACGGTGGCCATTTGAT+CGG | + | tig0022022:22214-22233 | None:intergenic | 40.0% | |
| CGTATTTCTCAGAGAGGATA+CGG | + | tig0022022:22287-22306 | None:intergenic | 40.0% | |
| ! | CGTATCCTCTCTGAGAAATA+CGG | - | tig0022022:22285-22304 | Msa1396320:intron | 40.0% |
| AATCTCGCGAGAAATTGGAA+GGG | + | tig0022022:22364-22383 | None:intergenic | 40.0% | |
| ATGAGAATCTCGCGAGAAAT+TGG | + | tig0022022:22369-22388 | None:intergenic | 40.0% | |
| !! | AGAAAAGCTTGCGCTGATTT+GGG | - | tig0022022:22473-22492 | Msa1396320:intron | 40.0% |
| ! | CTTCGGAAATTTGTTCAGGA+AGG | + | tig0022022:22520-22539 | None:intergenic | 40.0% |
| ! | TCAGCTTCGGAAATTTGTTC+AGG | + | tig0022022:22524-22543 | None:intergenic | 40.0% |
| AGTGACTCACCATGTACATT+GGG | + | tig0022022:22581-22600 | None:intergenic | 40.0% | |
| AAGTGACTCACCATGTACAT+TGG | + | tig0022022:22582-22601 | None:intergenic | 40.0% | |
| GGCTTTCATCCTTTGAACAT+CGG | - | tig0022022:22763-22782 | Msa1396320:three_prime_UTR | 40.0% | |
| ATGTGAGTGGAATTCATCGA+GGG | + | tig0022022:23317-23336 | None:intergenic | 40.0% | |
| AAATGACTCTTCGCATGAGT+AGG | + | tig0022022:23602-23621 | None:intergenic | 40.0% | |
| TATTGTAACAACCTTCCCAC+AGG | + | tig0022022:23718-23737 | None:intergenic | 40.0% | |
| ! | TGTTTTTCGTCCCTGCAAAT+AGG | - | tig0022022:23834-23853 | Msa1396320:CDS | 40.0% |
| ! | GTTTTTCGTCCCTGCAAATA+GGG | - | tig0022022:23835-23854 | Msa1396320:CDS | 40.0% |
| ! | TTTTTCGTCCCTGCAAATAG+GGG | - | tig0022022:23836-23855 | Msa1396320:CDS | 40.0% |
| CTTTGCAGGGGCAAAAAAAA+AGG | + | tig0022022:23894-23913 | None:intergenic | 40.0% | |
| !! | GCATTGATTAACTGGGTCAA+GGG | + | tig0022022:24930-24949 | None:intergenic | 40.0% |
| !! | TGACGTGGCATTGATTAACT+GGG | + | tig0022022:24923-24942 | None:intergenic | 40.0% |
| !! | ATGACGTGGCATTGATTAAC+TGG | + | tig0022022:24922-24941 | None:intergenic | 40.0% |
| TTAGCAAAATGGCATGGGAA+TGG | - | tig0022022:23970-23989 | Msa1396320:intron | 40.0% | |
| CATACTTTGCTTAGTCAACG+AGG | + | tig0022022:24006-24025 | None:intergenic | 40.0% | |
| ! | CTCGTTGACTAAGCAAAGTA+TGG | - | tig0022022:24004-24023 | Msa1396320:intron | 40.0% |
| ! | AAGGAAGAAGAAGGTAATGG+TGG | + | tig0022022:24085-24104 | None:intergenic | 40.0% |
| ! | ATTGCTGTTGCTATTGCTGT+TGG | + | tig0022022:24136-24155 | None:intergenic | 40.0% |
| !! | CACTTGGTTTGTTAAGCTTC+TGG | + | tig0022022:24229-24248 | None:intergenic | 40.0% |
| GAAGCTTAACAAACCAAGTG+TGG | - | tig0022022:24229-24248 | Msa1396320:intron | 40.0% | |
| !! | GTGGTTGGGTTTTGATGTTT+TGG | - | tig0022022:24277-24296 | Msa1396320:intron | 40.0% |
| !!! | GGTTTTGATGTTTTGGGACA+CGG | - | tig0022022:24284-24303 | Msa1396320:intron | 40.0% |
| AGAAGAGAAGAGGATGAAGA+AGG | - | tig0022022:24314-24333 | Msa1396320:intron | 40.0% | |
| AAATTGAAGAACACGGTCAC+AGG | - | tig0022022:24341-24360 | Msa1396320:intron | 40.0% | |
| !!! | TGATGTTGTTTTGCGGTTAC+CGG | + | tig0022022:24619-24638 | None:intergenic | 40.0% |
| TGAATGGTGAATGGGATTGT+AGG | - | tig0022022:24719-24738 | Msa1396320:intron | 40.0% | |
| ATGGGATTGTAGGACAATGA+AGG | - | tig0022022:24729-24748 | Msa1396320:intron | 40.0% | |
| ATGGAACACGAGAAAGAAGA+GGG | - | tig0022022:24831-24850 | Msa1396320:intron | 40.0% | |
| !! | ATGACGTGGCATTGATTAAC+TGG | - | tig0022022:24922-24941 | Msa1396320:intron | 40.0% |
| !! | TGACGTGGCATTGATTAACT+GGG | - | tig0022022:24923-24942 | Msa1396320:intron | 40.0% |
| !! | GCATTGATTAACTGGGTCAA+GGG | - | tig0022022:24930-24949 | Msa1396320:intron | 40.0% |
| TTTAAGCGACCCCTATTTAC+AGG | - | tig0022022:25019-25038 | Msa1396320:intron | 40.0% | |
| TTAAGCGACCCCTATTTACA+GGG | - | tig0022022:25020-25039 | Msa1396320:intron | 40.0% | |
| CTTGAACTATTGTCACGAAG+TGG | - | tig0022022:25114-25133 | Msa1396320:intron | 40.0% | |
| ! | GTTGGTAGAAGCAACATAGT+CGG | - | tig0022022:25168-25187 | Msa1396320:intron | 40.0% |
| TTGGTAGAAGCAACATAGTC+GGG | - | tig0022022:25169-25188 | Msa1396320:intron | 40.0% | |
| !! | GCTTTTGAAAGCAGATGCTA+CGG | - | tig0022022:25209-25228 | Msa1396320:intron | 40.0% |
| ACTTGTGTGTGAATGAGCAA+TGG | + | tig0022022:25238-25257 | None:intergenic | 40.0% | |
| ! | GATATTGTTATTGCAGCAGC+AGG | - | tig0022022:25285-25304 | Msa1396320:intron | 40.0% |
| CATAGGAACCTAAGTGTTTG+TGG | - | tig0022022:25504-25523 | Msa1396320:intron | 40.0% | |
| ATCAAGATTGTCAAGAGAGC+TGG | + | tig0022022:25626-25645 | None:intergenic | 40.0% | |
| !!! | GCTATATTTTCTGGAGTGTG+AGG | + | tig0022022:25757-25776 | None:intergenic | 40.0% |
| AAGGGAAGTTGGATAAAACC+TGG | - | tig0022022:25831-25850 | Msa1396320:intron | 40.0% | |
| !! | ATTCTGTTGATGACCCAACT+AGG | - | tig0022022:25880-25899 | Msa1396320:intron | 40.0% |
| TATAACCTGCCTTCCTAGTT+GGG | + | tig0022022:25896-25915 | None:intergenic | 40.0% | |
| ! | AAGCATCTAAAGTTGCTGGT+TGG | - | tig0022022:25943-25962 | Msa1396320:intron | 40.0% |
| AGCAACATTGTGACTGTCAT+TGG | + | tig0022022:25996-26015 | None:intergenic | 40.0% | |
| TCTTAGCAGAAACTGAACTG+AGG | + | tig0022022:26125-26144 | None:intergenic | 40.0% | |
| AAAAAGATCAAGAGCAGGGA+AGG | + | tig0022022:26212-26231 | None:intergenic | 40.0% | |
| AGCACATACAGAGAACAAGA+GGG | + | tig0022022:26236-26255 | None:intergenic | 40.0% | |
| TAGCACATACAGAGAACAAG+AGG | + | tig0022022:26237-26256 | None:intergenic | 40.0% | |
| TACAGAGGGGAAGAAGAAAT+AGG | + | tig0022022:26356-26375 | None:intergenic | 40.0% | |
| TACAGAGGGGAAGAAGAAAT+AGG | + | tig0022022:26356-26375 | None:intergenic | 40.0% | |
| TACAGAGGGGAAGAAGAAAT+AGG | + | tig0022022:26356-26375 | None:intergenic | 40.0% | |
| ! | AACTAGCGCATGGACATTTT+GGG | + | tig0022022:26881-26900 | None:intergenic | 40.0% |
| ! | TAACTAGCGCATGGACATTT+TGG | + | tig0022022:26882-26901 | None:intergenic | 40.0% |
| AATGCGCAATTTAAGTCACG+TGG | - | tig0022022:26921-26940 | Msa1396320:five_prime_UTR | 40.0% | |
| CAAATGGCCACCGTAATTGA+CGG | - | tig0022022:22216-22235 | Msa1396320:intron | 45.0% | |
| AGATCGGATTGTTTGTGCCA+CGG | + | tig0022022:22247-22266 | None:intergenic | 45.0% | |
| ATCGCGAGAGAAGATGATGA+AGG | + | tig0022022:22333-22352 | None:intergenic | 45.0% | |
| ATCTCGCGAGAAATTGGAAG+GGG | + | tig0022022:22363-22382 | None:intergenic | 45.0% | |
| GAATCTCGCGAGAAATTGGA+AGG | + | tig0022022:22365-22384 | None:intergenic | 45.0% | |
| !! | CATCATCATCTTCAGGTTGC+TGG | - | tig0022022:22392-22411 | Msa1396320:intron | 45.0% |
| GACTTGCAGTGGTGATAGTA+GGG | - | tig0022022:22414-22433 | Msa1396320:intron | 45.0% | |
| !! | GAGAAAAGCTTGCGCTGATT+TGG | - | tig0022022:22472-22491 | Msa1396320:intron | 45.0% |
| AACGCTGATCCCAATGTACA+TGG | - | tig0022022:22569-22588 | Msa1396320:intron | 45.0% | |
| GACTGAAATCAGCCTTGAGA+AGG | - | tig0022022:22732-22751 | Msa1396320:three_prime_UTR | 45.0% | |
| AGCCTTGAGAAGGATGTTGA+TGG | - | tig0022022:22742-22761 | Msa1396320:three_prime_UTR | 45.0% | |
| AGCCATCAACATCCTTCTCA+AGG | + | tig0022022:22747-22766 | None:intergenic | 45.0% | |
| ! | GCATTTACTTTGGGAGTGCA+GGG | + | tig0022022:22826-22845 | None:intergenic | 45.0% |
| ! | AGCATTTACTTTGGGAGTGC+AGG | + | tig0022022:22827-22846 | None:intergenic | 45.0% |
| TGGTTGAGATCGAACCTGTT+TGG | + | tig0022022:23236-23255 | None:intergenic | 45.0% | |
| GAATTCATCGAGGGTCTGTT+TGG | + | tig0022022:23308-23327 | None:intergenic | 45.0% | |
| CATGTGAGTGGAATTCATCG+AGG | + | tig0022022:23318-23337 | None:intergenic | 45.0% | |
| !! | AACCTTCCCACAGGTTTTAG+GGG | + | tig0022022:23709-23728 | None:intergenic | 45.0% |
| ! | CAACCTTCCCACAGGTTTTA+GGG | + | tig0022022:23710-23729 | None:intergenic | 45.0% |
| ! | ACAACCTTCCCACAGGTTTT+AGG | + | tig0022022:23711-23730 | None:intergenic | 45.0% |
| TTAAGCGACCCCTATTTGCA+GGG | + | tig0022022:23847-23866 | None:intergenic | 45.0% | |
| TTTAAGCGACCCCTATTTGC+AGG | + | tig0022022:23848-23867 | None:intergenic | 45.0% | |
| !! | GGCATTGATTAACTGGGTCA+AGG | + | tig0022022:24929-24948 | None:intergenic | 45.0% |
| ! | GAAGAAGAAGGTAATGGTGG+AGG | + | tig0022022:24082-24101 | None:intergenic | 45.0% |
| ! | TGTTGCTATTGCTGTTGGTG+GGG | + | tig0022022:24131-24150 | None:intergenic | 45.0% |
| ! | CTGTTGCTATTGCTGTTGGT+GGG | + | tig0022022:24132-24151 | None:intergenic | 45.0% |
| ! | TGTGACTGTGTTGACATTGC+CGG | + | tig0022022:24532-24551 | None:intergenic | 45.0% |
| TTAGTGTTGTGACTGTGTCG+TGG | + | tig0022022:24565-24584 | None:intergenic | 45.0% | |
| !!! | GAAGCTGCTTTTTCCGTCAT+CGG | + | tig0022022:24680-24699 | None:intergenic | 45.0% |
| CATGGAACACGAGAAAGAAG+AGG | - | tig0022022:24830-24849 | Msa1396320:intron | 45.0% | |
| !! | GGCATTGATTAACTGGGTCA+AGG | - | tig0022022:24929-24948 | Msa1396320:intron | 45.0% |
| ACTTTGCGGGGGCAAAAAAA+AGG | - | tig0022022:24973-24992 | Msa1396320:intron | 45.0% | |
| GCTTCACGTATGATGTCTTC+TGG | + | tig0022022:25264-25283 | None:intergenic | 45.0% | |
| ACATCTATTACTGCAGCTCC+AGG | + | tig0022022:25852-25871 | None:intergenic | 45.0% | |
| GGAGCTGCAGTAATAGATGT+CGG | - | tig0022022:25852-25871 | Msa1396320:intron | 45.0% | |
| !! | TGTTGATGACCCAACTAGGA+AGG | - | tig0022022:25884-25903 | Msa1396320:intron | 45.0% |
| CTATAACCTGCCTTCCTAGT+TGG | + | tig0022022:25897-25916 | None:intergenic | 45.0% | |
| CAACTAGGAAGGCAGGTTAT+AGG | - | tig0022022:25895-25914 | Msa1396320:intron | 45.0% | |
| AAGGCAGGTTATAGGCTTGT+TGG | - | tig0022022:25903-25922 | Msa1396320:intron | 45.0% | |
| !! | GAGGAAGCATCTAAAGTTGC+TGG | - | tig0022022:25939-25958 | Msa1396320:intron | 45.0% |
| GGGGAAAAAGATCAAGAGCA+GGG | + | tig0022022:26216-26235 | None:intergenic | 45.0% | |
| AGGGGAAAAAGATCAAGAGC+AGG | + | tig0022022:26217-26236 | None:intergenic | 45.0% | |
| GCACATACAGAGAACAAGAG+GGG | + | tig0022022:26235-26254 | None:intergenic | 45.0% | |
| GTATAGCACATACTTGGGCA+TGG | + | tig0022022:26452-26471 | None:intergenic | 45.0% | |
| GTATAGCACATACTTGGGCA+TGG | + | tig0022022:26452-26471 | None:intergenic | 45.0% | |
| !!! | TGTTTATTTTTTTATAATAT+AGG | - | tig0022022:23336-23355 | Msa1396320:intron | 5.0% |
| !!! | GTTTATTTTTTTATAATATA+GGG | - | tig0022022:23337-23356 | Msa1396320:intron | 5.0% |
| CGCAACCTTCTCCGATCAAA+TGG | - | tig0022022:22200-22219 | Msa1396320:intron | 50.0% | |
| CACGGCTTTGCCGTCAATTA+CGG | + | tig0022022:22229-22248 | None:intergenic | 50.0% | |
| CCTTGCCGTATTTCTCAGAG+AGG | + | tig0022022:22293-22312 | None:intergenic | 50.0% | |
| ! | CCTCTCTGAGAAATACGGCA+AGG | - | tig0022022:22290-22309 | Msa1396320:intron | 50.0% |
| TCTCGCGAGAAATTGGAAGG+GGG | + | tig0022022:22362-22381 | None:intergenic | 50.0% | |
| GGACTTGCAGTGGTGATAGT+AGG | - | tig0022022:22413-22432 | Msa1396320:intron | 50.0% | |
| GCAAGCTTGCCGATGTTCAA+AGG | + | tig0022022:22775-22794 | None:intergenic | 50.0% | |
| ATCGGCAAGCTTGCCATGAA+AGG | - | tig0022022:22781-22800 | Msa1396320:three_prime_UTR | 50.0% | |
| GAGTGCAGGGAACAAAGAGA+GGG | + | tig0022022:22813-22832 | None:intergenic | 50.0% | |
| CATCGAGGGTCTGTTTGGTA+AGG | + | tig0022022:23303-23322 | None:intergenic | 50.0% | |
| TGTGATCCCCCTAAAACCTG+TGG | - | tig0022022:23699-23718 | Msa1396320:CDS | 50.0% | |
| GTGATCCCCCTAAAACCTGT+GGG | - | tig0022022:23700-23719 | Msa1396320:CDS | 50.0% | |
| !!! | ACCTTCCCACAGGTTTTAGG+GGG | + | tig0022022:23708-23727 | None:intergenic | 50.0% |
| TGTGCGTTCTTGATCGGCAT+GGG | + | tig0022022:23771-23790 | None:intergenic | 50.0% | |
| TTGTGCGTTCTTGATCGGCA+TGG | + | tig0022022:23772-23791 | None:intergenic | 50.0% | |
| ! | GTGGTGGGAGAGAAGAAAGA+AGG | + | tig0022022:24104-24123 | None:intergenic | 50.0% |
| ! | TTGCTATTGCTGTTGGTGGG+GGG | + | tig0022022:24129-24148 | None:intergenic | 50.0% |
| ! | GTTGCTATTGCTGTTGGTGG+GGG | + | tig0022022:24130-24149 | None:intergenic | 50.0% |
| ! | GCTGTTGCTATTGCTGTTGG+TGG | + | tig0022022:24133-24152 | None:intergenic | 50.0% |
| CGGTTGCAGAAGAAGAGAAG+AGG | - | tig0022022:24304-24323 | Msa1396320:intron | 50.0% | |
| TGCCTGTCCTGAACAATCTG+AGG | - | tig0022022:24463-24482 | Msa1396320:intron | 50.0% | |
| CTGTCCTGAACAATCTGAGG+CGG | - | tig0022022:24466-24485 | Msa1396320:intron | 50.0% | |
| ACATTGCCGGCGTTTAAGAG+CGG | + | tig0022022:24519-24538 | None:intergenic | 50.0% | |
| AAAGGGGAAAAGGGCAGTTG+TGG | - | tig0022022:25146-25165 | Msa1396320:intron | 50.0% | |
| TGTTATTGCAGCAGCAGGAC+AGG | - | tig0022022:25290-25309 | Msa1396320:intron | 50.0% | |
| GGAACTGGCCACAAACACTT+AGG | + | tig0022022:25515-25534 | None:intergenic | 50.0% | |
| GGTTGGATTACTCCTGTTCC+TGG | - | tig0022022:25960-25979 | Msa1396320:intron | 50.0% | |
| TGGATTACTCCTGTTCCTGG+AGG | - | tig0022022:25963-25982 | Msa1396320:intron | 50.0% | |
| AGGTTGCAGGCATTACAGAG+GGG | + | tig0022022:26369-26388 | None:intergenic | 50.0% | |
| GAGGTTGCAGGCATTACAGA+GGG | + | tig0022022:26370-26389 | None:intergenic | 50.0% | |
| AGAGGTTGCAGGCATTACAG+AGG | + | tig0022022:26371-26390 | None:intergenic | 50.0% | |
| AGGTTGCAGGCATTACAGAG+GGG | + | tig0022022:26369-26388 | None:intergenic | 50.0% | |
| GAGGTTGCAGGCATTACAGA+GGG | + | tig0022022:26370-26389 | None:intergenic | 50.0% | |
| AGAGGTTGCAGGCATTACAG+AGG | + | tig0022022:26371-26390 | None:intergenic | 50.0% | |
| AGGTTGCAGGCATTACAGAG+GGG | + | tig0022022:26369-26388 | None:intergenic | 50.0% | |
| GAGGTTGCAGGCATTACAGA+GGG | + | tig0022022:26370-26389 | None:intergenic | 50.0% | |
| AGAGGTTGCAGGCATTACAG+AGG | + | tig0022022:26371-26390 | None:intergenic | 50.0% | |
| ! | ACATTTTGGGCATGGCTGCA+GGG | + | tig0022022:26868-26887 | None:intergenic | 50.0% |
| TGCGCTAGTTAACTAGCGCA+TGG | + | tig0022022:26891-26910 | None:intergenic | 50.0% | |
| GTCACGTGGCGCAAATTAAG+TGG | - | tig0022022:26935-26954 | Msa1396320:five_prime_UTR | 50.0% | |
| GCAAATTAAGTGGCGCAAGG+TGG | - | tig0022022:26945-26964 | Msa1396320:five_prime_UTR | 50.0% | |
| GGTGGCCATTTGATCGGAGA+AGG | + | tig0022022:22208-22227 | None:intergenic | 55.0% | |
| GGCTTTGCCGTCAATTACGG+TGG | + | tig0022022:22226-22245 | None:intergenic | 55.0% | |
| CGTAATTGACGGCAAAGCCG+TGG | - | tig0022022:22227-22246 | Msa1396320:intron | 55.0% | |
| CCTCGTCGGCGATTTCAGAT+CGG | + | tig0022022:22263-22282 | None:intergenic | 55.0% | |
| AGAGAGGATACGGACCTCGT+CGG | + | tig0022022:22277-22296 | None:intergenic | 55.0% | |
| CTCGCGAGAAATTGGAAGGG+GGG | + | tig0022022:22361-22380 | None:intergenic | 55.0% | |
| ! | TCAGGTTGCTGGACTTGCAG+TGG | - | tig0022022:22403-22422 | Msa1396320:intron | 55.0% |
| GAGAGGGTCTCTGCCTTTCA+TGG | + | tig0022022:22797-22816 | None:intergenic | 55.0% | |
| GGAGTGCAGGGAACAAAGAG+AGG | + | tig0022022:22814-22833 | None:intergenic | 55.0% | |
| TCCCCCTAAAACCTGTGGGA+AGG | - | tig0022022:23704-23723 | Msa1396320:CDS | 55.0% | |
| ! | CGAAGGCATGGTTGAGGTGA+CGG | + | tig0022022:24424-24443 | None:intergenic | 55.0% |
| GGCAAGTGAGACAAGGCACA+CGG | + | tig0022022:24447-24466 | None:intergenic | 55.0% | |
| CAGGACAGGCAAGTGAGACA+AGG | + | tig0022022:24454-24473 | None:intergenic | 55.0% | |
| CGCCTCAGATTGTTCAGGAC+AGG | + | tig0022022:24468-24487 | None:intergenic | 55.0% | |
| CGTACCGCCTCAGATTGTTC+AGG | + | tig0022022:24473-24492 | None:intergenic | 55.0% | |
| ! | CAGTTTTCGGCGACCGATGA+CGG | - | tig0022022:24664-24683 | Msa1396320:intron | 55.0% |
| GGGAAAAGGGCAGTTGTGGT+TGG | - | tig0022022:25150-25169 | Msa1396320:intron | 55.0% | |
| AGCAGCAGGACAGGCAAAGA+TGG | - | tig0022022:25299-25318 | Msa1396320:intron | 55.0% | |
| GATGACCCAACTAGGAAGGC+AGG | - | tig0022022:25888-25907 | Msa1396320:intron | 55.0% | |
| ! | ACTCCTGTTCCTGGAGGTGT+AGG | - | tig0022022:25969-25988 | Msa1396320:intron | 55.0% |
| GTCATTGGACCTACACCTCC+AGG | + | tig0022022:25981-26000 | None:intergenic | 55.0% | |
| ! | GTGCGAGTGTTTTGTGCTGC+GGG | + | tig0022022:26422-26441 | None:intergenic | 55.0% |
| ! | GGTGCGAGTGTTTTGTGCTG+CGG | + | tig0022022:26423-26442 | None:intergenic | 55.0% |
| CATACTTGGGCATGGCTGCA+GGG | + | tig0022022:26444-26463 | None:intergenic | 55.0% | |
| ACATACTTGGGCATGGCTGC+AGG | + | tig0022022:26445-26464 | None:intergenic | 55.0% | |
| ! | GTGCGAGTGTTTTGTGCTGC+GGG | + | tig0022022:26422-26441 | None:intergenic | 55.0% |
| ! | GGTGCGAGTGTTTTGTGCTG+CGG | + | tig0022022:26423-26442 | None:intergenic | 55.0% |
| CATACTTGGGCATGGCTGCA+GGG | + | tig0022022:26444-26463 | None:intergenic | 55.0% | |
| ACATACTTGGGCATGGCTGC+AGG | + | tig0022022:26445-26464 | None:intergenic | 55.0% | |
| ! | GTGCGAGTGTTTTGTGCTGC+GGG | + | tig0022022:26422-26441 | None:intergenic | 55.0% |
| ! | GGTGCGAGTGTTTTGTGCTG+CGG | + | tig0022022:26423-26442 | None:intergenic | 55.0% |
| ! | GACATTTTGGGCATGGCTGC+AGG | + | tig0022022:26869-26888 | None:intergenic | 55.0% |
| ! | GCGCATGGACATTTTGGGCA+TGG | + | tig0022022:26876-26895 | None:intergenic | 55.0% |
| GGCGCAAATTAAGTGGCGCA+AGG | - | tig0022022:26942-26961 | Msa1396320:five_prime_UTR | 55.0% | |
| ! | CCGATCTGAAATCGCCGACG+AGG | - | tig0022022:22260-22279 | Msa1396320:intron | 60.0% |
| ! | CTATTGCTGTTGGTGGGGGG+CGG | + | tig0022022:24126-24145 | None:intergenic | 60.0% |
| TTACGACCGAGACCTGGCGA+CGG | + | tig0022022:24392-24411 | None:intergenic | 60.0% | |
| ! | ATGGTTGAGGTGACGGCAGG+CGG | + | tig0022022:24417-24436 | None:intergenic | 60.0% |
| ! | ACACGGCGAAGGCATGGTTG+AGG | + | tig0022022:24430-24449 | None:intergenic | 60.0% |
| TGAGACAAGGCACACGGCGA+AGG | + | tig0022022:24441-24460 | None:intergenic | 60.0% | |
| !! | TTTAAGAGCGGTACCGGCGC+TGG | + | tig0022022:24507-24526 | None:intergenic | 60.0% |
| CCGGCGTTTAAGAGCGGTAC+CGG | + | tig0022022:24513-24532 | None:intergenic | 60.0% | |
| CCGGTACCGCTCTTAAACGC+CGG | - | tig0022022:24510-24529 | Msa1396320:intron | 60.0% | |
| GGACCTACACCTCCAGGAAC+AGG | + | tig0022022:25975-25994 | None:intergenic | 60.0% | |
| ! | GATAGAGTGCCACCGTCGCC+AGG | - | tig0022022:24377-24396 | Msa1396320:intron | 65.0% |
| GCGGAGTTACGACCGAGACC+TGG | + | tig0022022:24398-24417 | None:intergenic | 65.0% | |
| ! | GGCATGGTTGAGGTGACGGC+AGG | + | tig0022022:24420-24439 | None:intergenic | 65.0% |
| CAAGGCACACGGCGAAGGCA+TGG | + | tig0022022:24436-24455 | None:intergenic | 65.0% | |
| ! | TGTTGGTGGGGGGCGGTGGT+GGG | + | tig0022022:24119-24138 | None:intergenic | 70.0% |
| ! | TTGCTGTTGGTGGGGGGCGG+TGG | + | tig0022022:24123-24142 | None:intergenic | 70.0% |
| GTGCCACCGTCGCCAGGTCT+CGG | - | tig0022022:24383-24402 | Msa1396320:intron | 70.0% | |
| CGCAACCTCTGCTCCAGCGC+CGG | - | tig0022022:24491-24510 | Msa1396320:intron | 70.0% | |
| ! | CTGTTGGTGGGGGGCGGTGG+TGG | + | tig0022022:24120-24139 | None:intergenic | 75.0% |
| CGACCGAGACCTGGCGACGG+TGG | + | tig0022022:24389-24408 | None:intergenic | 75.0% | |
| !! | CGGTACCGGCGCTGGAGCAG+AGG | + | tig0022022:24499-24518 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022022 | gene | 22041 | 26968 | 22041 | ID=Msa1396320;Name=Msa1396320 |
| tig0022022 | mRNA | 22041 | 26968 | 22041 | ID=Msa1396320-mRNA-1;Parent=Msa1396320;Name=Msa1396320-mRNA-1;_AED=0.13;_eAED=0.13;_QI=178|0.8|0.83|1|0.6|0.66|6|480|280 |
| tig0022022 | exon | 22041 | 22212 | 22041 | ID=Msa1396320-mRNA-1:exon:15518;Parent=Msa1396320-mRNA-1 |
| tig0022022 | exon | 22637 | 23181 | 22637 | ID=Msa1396320-mRNA-1:exon:15517;Parent=Msa1396320-mRNA-1 |
| tig0022022 | exon | 23689 | 23859 | 23689 | ID=Msa1396320-mRNA-1:exon:15516;Parent=Msa1396320-mRNA-1 |
| tig0022022 | exon | 26172 | 26329 | 26172 | ID=Msa1396320-mRNA-1:exon:15515;Parent=Msa1396320-mRNA-1 |
| tig0022022 | exon | 26419 | 26602 | 26419 | ID=Msa1396320-mRNA-1:exon:15514;Parent=Msa1396320-mRNA-1 |
| tig0022022 | exon | 26698 | 26968 | 26698 | ID=Msa1396320-mRNA-1:exon:15513;Parent=Msa1396320-mRNA-1 |
| tig0022022 | five_prime_UTR | 26791 | 26968 | 26791 | ID=Msa1396320-mRNA-1:five_prime_utr;Parent=Msa1396320-mRNA-1 |
| tig0022022 | CDS | 26698 | 26790 | 26698 | ID=Msa1396320-mRNA-1:cds;Parent=Msa1396320-mRNA-1 |
| tig0022022 | CDS | 26419 | 26602 | 26419 | ID=Msa1396320-mRNA-1:cds;Parent=Msa1396320-mRNA-1 |
| tig0022022 | CDS | 26172 | 26329 | 26172 | ID=Msa1396320-mRNA-1:cds;Parent=Msa1396320-mRNA-1 |
| tig0022022 | CDS | 23689 | 23859 | 23689 | ID=Msa1396320-mRNA-1:cds;Parent=Msa1396320-mRNA-1 |
| tig0022022 | CDS | 22945 | 23181 | 22945 | ID=Msa1396320-mRNA-1:cds;Parent=Msa1396320-mRNA-1 |
| tig0022022 | three_prime_UTR | 22637 | 22944 | 22637 | ID=Msa1396320-mRNA-1:three_prime_utr;Parent=Msa1396320-mRNA-1 |
| tig0022022 | three_prime_UTR | 22041 | 22212 | 22041 | ID=Msa1396320-mRNA-1:three_prime_utr;Parent=Msa1396320-mRNA-1 |
| Gene Sequence |
| Protein sequence |