AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0198280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0198280 MtrunA17_Chr2g0291941 88.393 224 2 2 1 200 1 224 1.27e-137 385
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0198280 AT1G31330.1 63.839 224 54 4 1 200 1 221 6.33e-92 270

Find 51 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGGAGAGGAGTGATTTA+AGG 0.186212 2_1:+16871006 Msa0198280:three_prime_UTR
GGGTGAAGCTTATTAATTTA+TGG 0.205737 2_1:-16870932 None:intergenic
CCTTAGGGTTGAGGTGGGTT+TGG 0.264823 2_1:-16869333 None:intergenic
ATGATGTTGGTTGAGAGTTT+TGG 0.311230 2_1:-16869374 None:intergenic
GCCAGCGCTGGAGCGCTGTC+TGG 0.317845 2_1:-16869614 None:intergenic
CAAGGAGAGGAGTGATTTAA+GGG 0.340811 2_1:+16871007 Msa0198280:three_prime_UTR
TGTTCCACTTGCTTCTAGAT+TGG 0.359779 2_1:+16869880 Msa0198280:CDS
AAGAGAAGGTTTGATAACTA+TGG 0.369761 2_1:+16869662 Msa0198280:CDS
TTGTATATTGCTGGTTGGAT+TGG 0.374422 2_1:+16869785 Msa0198280:CDS
GTGGGTTTGGAGAGGTTAGT+TGG 0.391367 2_1:-16869320 None:intergenic
TGTATATTGCTGGTTGGATT+GGG 0.400227 2_1:+16869786 Msa0198280:CDS
ATAATAATCTCTTTCTGTGT+AGG 0.434953 2_1:-16869854 None:intergenic
ATAGTTATCAAACCTTCTCT+TGG 0.439023 2_1:-16869660 None:intergenic
TAGATTTGAGTTTACATCGT+TGG 0.460617 2_1:-16869426 None:intergenic
AACTCTCTGTAAGCAGCAAT+AGG 0.463985 2_1:-16869923 None:intergenic
TCCAGACAGCGCTCCAGCGC+TGG 0.479964 2_1:+16869613 Msa0198280:CDS
GAATGGTGATCAAAGACATT+GGG 0.484178 2_1:+16869733 Msa0198280:CDS
TTGTTGACTCATTGTGTGGA+TGG 0.485766 2_1:+16870742 Msa0198280:CDS
GGTTTGTTGTGTGGTGCTGA+TGG 0.487070 2_1:+16869692 Msa0198280:CDS
GGGTTGAGGTGGGTTTGGAG+AGG 0.489158 2_1:-16869328 None:intergenic
TCAATCAACTTCATATACTT+AGG 0.501017 2_1:-16870885 None:intergenic
TGTGCTGCAGTGGATGATGT+TGG 0.507380 2_1:-16869387 None:intergenic
AAAAGAAACTTAGACATCCT+TGG 0.511183 2_1:-16869966 None:intergenic
TTTGATAACTATGGAAAGCA+AGG 0.512706 2_1:+16869671 Msa0198280:CDS
TTTGGCCTTAGGGTTGAGGT+GGG 0.515042 2_1:-16869338 None:intergenic
TTACCACATTTGATAGTGAA+TGG 0.520029 2_1:+16869716 Msa0198280:CDS
TTTGAGTTTACATCGTTGGT+TGG 0.526095 2_1:-16869422 None:intergenic
TTTATTGTTGACTCATTGTG+TGG 0.527806 2_1:+16870738 Msa0198280:CDS
ATGTCGGCGACAGCGGGGAG+TGG 0.529776 2_1:-16869497 None:intergenic
TTTCTTGGTTTGTGCTGCAG+TGG 0.533687 2_1:-16869397 None:intergenic
ATGATATTGATCAAGGATGC+AGG 0.533903 2_1:+16870689 Msa0198280:CDS
AGAGAGGATGATATTGATCA+AGG 0.536833 2_1:+16870682 Msa0198280:CDS
TGGGGTGAGTTTATCACACC+AGG 0.538935 2_1:+16869752 Msa0198280:CDS
GCAGGAAGGGTGATTATGAG+AGG 0.553668 2_1:+16870707 Msa0198280:CDS
GAAGCTTATTAATTTATGGA+AGG 0.556807 2_1:-16870928 None:intergenic
GGAAGGGTGATTATGAGAGG+AGG 0.563183 2_1:+16870710 Msa0198280:CDS
CCAAACCCACCTCAACCCTA+AGG 0.583142 2_1:+16869333 Msa0198280:CDS
GCTTACAGAGAGTTGTTGAA+TGG 0.589659 2_1:+16869932 Msa0198280:CDS
TGAATGGTGATCAAAGACAT+TGG 0.591211 2_1:+16869732 Msa0198280:CDS
AAAACCAATCTAGAAGCAAG+TGG 0.593997 2_1:-16869884 None:intergenic
ATTGATCAAGGATGCAGGAA+GGG 0.594187 2_1:+16870694 Msa0198280:CDS
CGGGGAGTGGTGATGAGATG+AGG 0.601172 2_1:-16869484 None:intergenic
CAGTTGAGAAAACCAAGAGA+AGG 0.621236 2_1:+16869648 Msa0198280:CDS
TATTGATCAAGGATGCAGGA+AGG 0.633297 2_1:+16870693 Msa0198280:CDS
GAAGGGTGATTATGAGAGGA+GGG 0.659997 2_1:+16870711 Msa0198280:CDS
GGAAAGCAAGGTTTGTTGTG+TGG 0.661769 2_1:+16869683 Msa0198280:CDS
TCACCATTCACTATCAAATG+TGG 0.665222 2_1:-16869719 None:intergenic
TGGAGCGTAAAGCTTGAGAG+AGG 0.675802 2_1:-16869594 None:intergenic
GAATGGTGAACTCATTGCCA+AGG 0.676808 2_1:+16869949 Msa0198280:CDS
GGGGTGAGTTTATCACACCA+GGG 0.698649 2_1:+16869753 Msa0198280:CDS
AATGGTGATCAAAGACATTG+GGG 0.721922 2_1:+16869734 Msa0198280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGAAATTTTGTTATTTTT+AGG + chr2_1:16870592-16870611 Msa0198280:intron 10.0%
!!! AATGAAATTTTGTTATTTTT+AGG + chr2_1:16870592-16870611 Msa0198280:intron 10.0%
!!! TTTGAAATATCAATAATGTA+AGG - chr2_1:16870132-16870151 None:intergenic 15.0%
!!! TGAAATTAAATTGGTAATAT+TGG + chr2_1:16870214-16870233 Msa0198280:intron 15.0%
!!! GAAATTAAATTGGTAATATT+GGG + chr2_1:16870215-16870234 Msa0198280:intron 15.0%
!!! AAATTAAATTGGTAATATTG+GGG + chr2_1:16870216-16870235 Msa0198280:intron 15.0%
!! GAATTAAAAATTTCATTGAA+TGG - chr2_1:16870501-16870520 None:intergenic 15.0%
!!! TTTGAAATATCAATAATGTA+AGG - chr2_1:16870132-16870151 None:intergenic 15.0%
!!! TGAAATTAAATTGGTAATAT+TGG + chr2_1:16870214-16870233 Msa0198280:intron 15.0%
!!! GAAATTAAATTGGTAATATT+GGG + chr2_1:16870215-16870234 Msa0198280:intron 15.0%
!!! AAATTAAATTGGTAATATTG+GGG + chr2_1:16870216-16870235 Msa0198280:intron 15.0%
!! GAATTAAAAATTTCATTGAA+TGG - chr2_1:16870501-16870520 None:intergenic 15.0%
!!! ATATTGTTTTTGTATATTGC+TGG + chr2_1:16869776-16869795 Msa0198280:CDS 20.0%
!! ATACTACAATTTAACCAATA+AGG - chr2_1:16870095-16870114 None:intergenic 20.0%
!! GGACTAAAATGAAATTAAAT+TGG + chr2_1:16870205-16870224 Msa0198280:intron 20.0%
!!! TTGATTAACATTTTGCAATT+AGG + chr2_1:16870305-16870324 Msa0198280:intron 20.0%
!! CAATTAGGTTTCAAAAATTA+TGG + chr2_1:16870320-16870339 Msa0198280:intron 20.0%
!! TCATGAAGAAAAAAATGAAA+GGG - chr2_1:16870955-16870974 None:intergenic 20.0%
!! TTCATGAAGAAAAAAATGAA+AGG - chr2_1:16870956-16870975 None:intergenic 20.0%
!!! CATTTTTTTCTTCATGAAAA+TGG + chr2_1:16870958-16870977 Msa0198280:three_prime_UTR 20.0%
!!! ATATTGTTTTTGTATATTGC+TGG + chr2_1:16869776-16869795 Msa0198280:CDS 20.0%
!! ATACTACAATTTAACCAATA+AGG - chr2_1:16870095-16870114 None:intergenic 20.0%
!! GGACTAAAATGAAATTAAAT+TGG + chr2_1:16870205-16870224 Msa0198280:intron 20.0%
!!! TTGATTAACATTTTGCAATT+AGG + chr2_1:16870305-16870324 Msa0198280:intron 20.0%
!! CAATTAGGTTTCAAAAATTA+TGG + chr2_1:16870320-16870339 Msa0198280:intron 20.0%
!! TCATGAAGAAAAAAATGAAA+GGG - chr2_1:16870955-16870974 None:intergenic 20.0%
!! TTCATGAAGAAAAAAATGAA+AGG - chr2_1:16870956-16870975 None:intergenic 20.0%
!!! CATTTTTTTCTTCATGAAAA+TGG + chr2_1:16870958-16870977 Msa0198280:three_prime_UTR 20.0%
! ATATACAAAAACAATATCCC+TGG - chr2_1:16869773-16869792 None:intergenic 25.0%
! ATAATAATCTCTTTCTGTGT+AGG - chr2_1:16869857-16869876 None:intergenic 25.0%
!!! AGTTTCTTTTGTTTACAACA+AGG + chr2_1:16869979-16869998 Msa0198280:intron 25.0%
! GATTGAGTAAATATCCTTAT+TGG + chr2_1:16870078-16870097 Msa0198280:intron 25.0%
! TTTAGTCCTTCAAATACTAA+AGG - chr2_1:16870193-16870212 None:intergenic 25.0%
! TTTGTAACCAATCTAATTAG+AGG + chr2_1:16870276-16870295 Msa0198280:intron 25.0%
! AGTTTCAAATAACTTAGATG+TGG - chr2_1:16870444-16870463 None:intergenic 25.0%
! TTGTCAAACATAAACTAATG+TGG + chr2_1:16870550-16870569 Msa0198280:intron 25.0%
! TGTCAAACATAAACTAATGT+GGG + chr2_1:16870551-16870570 Msa0198280:intron 25.0%
!!! TGTTGGTTTTTTGTTGTTTA+TGG + chr2_1:16870646-16870665 Msa0198280:intron 25.0%
! TCAATCAACTTCATATACTT+AGG - chr2_1:16870888-16870907 None:intergenic 25.0%
! GAAGCTTATTAATTTATGGA+AGG - chr2_1:16870931-16870950 None:intergenic 25.0%
! ATATACAAAAACAATATCCC+TGG - chr2_1:16869773-16869792 None:intergenic 25.0%
! ATAATAATCTCTTTCTGTGT+AGG - chr2_1:16869857-16869876 None:intergenic 25.0%
!!! AGTTTCTTTTGTTTACAACA+AGG + chr2_1:16869979-16869998 Msa0198280:intron 25.0%
! GATTGAGTAAATATCCTTAT+TGG + chr2_1:16870078-16870097 Msa0198280:intron 25.0%
! TTTAGTCCTTCAAATACTAA+AGG - chr2_1:16870193-16870212 None:intergenic 25.0%
! TTTGTAACCAATCTAATTAG+AGG + chr2_1:16870276-16870295 Msa0198280:intron 25.0%
! AGTTTCAAATAACTTAGATG+TGG - chr2_1:16870444-16870463 None:intergenic 25.0%
! TTGTCAAACATAAACTAATG+TGG + chr2_1:16870550-16870569 Msa0198280:intron 25.0%
! TGTCAAACATAAACTAATGT+GGG + chr2_1:16870551-16870570 Msa0198280:intron 25.0%
!!! TGTTGGTTTTTTGTTGTTTA+TGG + chr2_1:16870646-16870665 Msa0198280:intron 25.0%
! TCAATCAACTTCATATACTT+AGG - chr2_1:16870888-16870907 None:intergenic 25.0%
! GAAGCTTATTAATTTATGGA+AGG - chr2_1:16870931-16870950 None:intergenic 25.0%
!!! TTTGGTTTTTGAGGTAGTTT+TGG - chr2_1:16869359-16869378 None:intergenic 30.0%
! TAGATTTGAGTTTACATCGT+TGG - chr2_1:16869429-16869448 None:intergenic 30.0%
!!! AATTGTTTTGATTCTCTGCA+TGG - chr2_1:16869536-16869555 None:intergenic 30.0%
!!! TTTCTCAACTGTTGCTTTTA+TGG - chr2_1:16869639-16869658 None:intergenic 30.0%
ATAGTTATCAAACCTTCTCT+TGG - chr2_1:16869663-16869682 None:intergenic 30.0%
! AAGAGAAGGTTTGATAACTA+TGG + chr2_1:16869662-16869681 Msa0198280:CDS 30.0%
! TTTGATAACTATGGAAAGCA+AGG + chr2_1:16869671-16869690 Msa0198280:CDS 30.0%
!! TTACCACATTTGATAGTGAA+TGG + chr2_1:16869716-16869735 Msa0198280:CDS 30.0%
!! TGTTTTTGTATATTGCTGGT+TGG + chr2_1:16869780-16869799 Msa0198280:CDS 30.0%
!!! CTTCTAGATTGGTTTTTAGA+GGG + chr2_1:16869891-16869910 Msa0198280:CDS 30.0%
AAAAGAAACTTAGACATCCT+TGG - chr2_1:16869969-16869988 None:intergenic 30.0%
TACGGATTCGATTCAAATAT+TGG - chr2_1:16870170-16870189 None:intergenic 30.0%
TCCTTCAAATACTAAAGGTA+CGG - chr2_1:16870188-16870207 None:intergenic 30.0%
AATTCGTCCTCTAATTAGAT+TGG - chr2_1:16870286-16870305 None:intergenic 30.0%
TCTTACAAAACGAATTTGTG+AGG - chr2_1:16870410-16870429 None:intergenic 30.0%
!! TTTATTGTTGACTCATTGTG+TGG + chr2_1:16870738-16870757 Msa0198280:CDS 30.0%
!!! GTTCCTTTTTTACTCAAATG+TGG + chr2_1:16870851-16870870 Msa0198280:three_prime_UTR 30.0%
AGTCCACATTTGAGTAAAAA+AGG - chr2_1:16870857-16870876 None:intergenic 30.0%
! TTTTTACTCAAATGTGGACT+TGG + chr2_1:16870857-16870876 Msa0198280:three_prime_UTR 30.0%
GGGTGAAGCTTATTAATTTA+TGG - chr2_1:16870935-16870954 None:intergenic 30.0%
!!! TTTGGTTTTTGAGGTAGTTT+TGG - chr2_1:16869359-16869378 None:intergenic 30.0%
! TAGATTTGAGTTTACATCGT+TGG - chr2_1:16869429-16869448 None:intergenic 30.0%
!!! AATTGTTTTGATTCTCTGCA+TGG - chr2_1:16869536-16869555 None:intergenic 30.0%
!!! TTTCTCAACTGTTGCTTTTA+TGG - chr2_1:16869639-16869658 None:intergenic 30.0%
ATAGTTATCAAACCTTCTCT+TGG - chr2_1:16869663-16869682 None:intergenic 30.0%
! AAGAGAAGGTTTGATAACTA+TGG + chr2_1:16869662-16869681 Msa0198280:CDS 30.0%
! TTTGATAACTATGGAAAGCA+AGG + chr2_1:16869671-16869690 Msa0198280:CDS 30.0%
!! TTACCACATTTGATAGTGAA+TGG + chr2_1:16869716-16869735 Msa0198280:CDS 30.0%
!! TGTTTTTGTATATTGCTGGT+TGG + chr2_1:16869780-16869799 Msa0198280:CDS 30.0%
!!! CTTCTAGATTGGTTTTTAGA+GGG + chr2_1:16869891-16869910 Msa0198280:CDS 30.0%
AAAAGAAACTTAGACATCCT+TGG - chr2_1:16869969-16869988 None:intergenic 30.0%
TACGGATTCGATTCAAATAT+TGG - chr2_1:16870170-16870189 None:intergenic 30.0%
TCCTTCAAATACTAAAGGTA+CGG - chr2_1:16870188-16870207 None:intergenic 30.0%
AATTCGTCCTCTAATTAGAT+TGG - chr2_1:16870286-16870305 None:intergenic 30.0%
TCTTACAAAACGAATTTGTG+AGG - chr2_1:16870410-16870429 None:intergenic 30.0%
!! TTTATTGTTGACTCATTGTG+TGG + chr2_1:16870738-16870757 Msa0198280:CDS 30.0%
!!! GTTCCTTTTTTACTCAAATG+TGG + chr2_1:16870851-16870870 Msa0198280:three_prime_UTR 30.0%
AGTCCACATTTGAGTAAAAA+AGG - chr2_1:16870857-16870876 None:intergenic 30.0%
! TTTTTACTCAAATGTGGACT+TGG + chr2_1:16870857-16870876 Msa0198280:three_prime_UTR 30.0%
GGGTGAAGCTTATTAATTTA+TGG - chr2_1:16870935-16870954 None:intergenic 30.0%
!!! GTTGAGAGTTTTGGTTTTTG+AGG - chr2_1:16869368-16869387 None:intergenic 35.0%
!! ATGATGTTGGTTGAGAGTTT+TGG - chr2_1:16869377-16869396 None:intergenic 35.0%
! TTTGAGTTTACATCGTTGGT+TGG - chr2_1:16869425-16869444 None:intergenic 35.0%
! AGAGGATTCAAGCTTTTTGA+TGG - chr2_1:16869579-16869598 None:intergenic 35.0%
TCACCATTCACTATCAAATG+TGG - chr2_1:16869722-16869741 None:intergenic 35.0%
TGAATGGTGATCAAAGACAT+TGG + chr2_1:16869732-16869751 Msa0198280:CDS 35.0%
GAATGGTGATCAAAGACATT+GGG + chr2_1:16869733-16869752 Msa0198280:CDS 35.0%
AATGGTGATCAAAGACATTG+GGG + chr2_1:16869734-16869753 Msa0198280:CDS 35.0%
! TTGTATATTGCTGGTTGGAT+TGG + chr2_1:16869785-16869804 Msa0198280:CDS 35.0%
! TGTATATTGCTGGTTGGATT+GGG + chr2_1:16869786-16869805 Msa0198280:CDS 35.0%
AAAACCAATCTAGAAGCAAG+TGG - chr2_1:16869887-16869906 None:intergenic 35.0%
!!! GCTTCTAGATTGGTTTTTAG+AGG + chr2_1:16869890-16869909 Msa0198280:CDS 35.0%
TCCGTACCTTTAGTATTTGA+AGG + chr2_1:16870184-16870203 Msa0198280:intron 35.0%
AGAGAGGATGATATTGATCA+AGG + chr2_1:16870682-16870701 Msa0198280:CDS 35.0%
ATGATATTGATCAAGGATGC+AGG + chr2_1:16870689-16870708 Msa0198280:CDS 35.0%
GCTAGTACAAAAATGAAGCA+AGG + chr2_1:16870989-16871008 Msa0198280:three_prime_UTR 35.0%
TACAAAAATGAAGCAAGGAG+AGG + chr2_1:16870994-16871013 Msa0198280:three_prime_UTR 35.0%
!!! GTTGAGAGTTTTGGTTTTTG+AGG - chr2_1:16869368-16869387 None:intergenic 35.0%
!! ATGATGTTGGTTGAGAGTTT+TGG - chr2_1:16869377-16869396 None:intergenic 35.0%
! TTTGAGTTTACATCGTTGGT+TGG - chr2_1:16869425-16869444 None:intergenic 35.0%
! AGAGGATTCAAGCTTTTTGA+TGG - chr2_1:16869579-16869598 None:intergenic 35.0%
TCACCATTCACTATCAAATG+TGG - chr2_1:16869722-16869741 None:intergenic 35.0%
TGAATGGTGATCAAAGACAT+TGG + chr2_1:16869732-16869751 Msa0198280:CDS 35.0%
GAATGGTGATCAAAGACATT+GGG + chr2_1:16869733-16869752 Msa0198280:CDS 35.0%
AATGGTGATCAAAGACATTG+GGG + chr2_1:16869734-16869753 Msa0198280:CDS 35.0%
! TTGTATATTGCTGGTTGGAT+TGG + chr2_1:16869785-16869804 Msa0198280:CDS 35.0%
! TGTATATTGCTGGTTGGATT+GGG + chr2_1:16869786-16869805 Msa0198280:CDS 35.0%
AAAACCAATCTAGAAGCAAG+TGG - chr2_1:16869887-16869906 None:intergenic 35.0%
!!! GCTTCTAGATTGGTTTTTAG+AGG + chr2_1:16869890-16869909 Msa0198280:CDS 35.0%
TCCGTACCTTTAGTATTTGA+AGG + chr2_1:16870184-16870203 Msa0198280:intron 35.0%
AGAGAGGATGATATTGATCA+AGG + chr2_1:16870682-16870701 Msa0198280:CDS 35.0%
ATGATATTGATCAAGGATGC+AGG + chr2_1:16870689-16870708 Msa0198280:CDS 35.0%
GCTAGTACAAAAATGAAGCA+AGG + chr2_1:16870989-16871008 Msa0198280:three_prime_UTR 35.0%
TACAAAAATGAAGCAAGGAG+AGG + chr2_1:16870994-16871013 Msa0198280:three_prime_UTR 35.0%
!!! TTGAGGTAGTTTTGGCCTTA+GGG - chr2_1:16869351-16869370 None:intergenic 40.0%
!!! TTTGAGGTAGTTTTGGCCTT+AGG - chr2_1:16869352-16869371 None:intergenic 40.0%
!!! CATCGTTGGTTGGTTTTTCT+TGG - chr2_1:16869415-16869434 None:intergenic 40.0%
TTGATTCTCTGCATGGTGTT+AGG - chr2_1:16869529-16869548 None:intergenic 40.0%
!! GATGGATTGTTTCTCACGTT+TGG - chr2_1:16869561-16869580 None:intergenic 40.0%
CAGTTGAGAAAACCAAGAGA+AGG + chr2_1:16869648-16869667 Msa0198280:CDS 40.0%
TGTTCCACTTGCTTCTAGAT+TGG + chr2_1:16869880-16869899 Msa0198280:CDS 40.0%
!! TGGTTTTTAGAGGGTTCAGT+TGG + chr2_1:16869900-16869919 Msa0198280:CDS 40.0%
AACTCTCTGTAAGCAGCAAT+AGG - chr2_1:16869926-16869945 None:intergenic 40.0%
GCTTACAGAGAGTTGTTGAA+TGG + chr2_1:16869932-16869951 Msa0198280:CDS 40.0%
TTGCAATCGTGACTTTGTGT+TGG + chr2_1:16870629-16870648 Msa0198280:intron 40.0%
! TGGTGATTTTCAGACAAGAG+AGG + chr2_1:16870666-16870685 Msa0198280:intron 40.0%
TATTGATCAAGGATGCAGGA+AGG + chr2_1:16870693-16870712 Msa0198280:CDS 40.0%
ATTGATCAAGGATGCAGGAA+GGG + chr2_1:16870694-16870713 Msa0198280:CDS 40.0%
!! TTGTTGACTCATTGTGTGGA+TGG + chr2_1:16870742-16870761 Msa0198280:CDS 40.0%
!!! TTGAGGTAGTTTTGGCCTTA+GGG - chr2_1:16869351-16869370 None:intergenic 40.0%
!!! TTTGAGGTAGTTTTGGCCTT+AGG - chr2_1:16869352-16869371 None:intergenic 40.0%
!!! CATCGTTGGTTGGTTTTTCT+TGG - chr2_1:16869415-16869434 None:intergenic 40.0%
TTGATTCTCTGCATGGTGTT+AGG - chr2_1:16869529-16869548 None:intergenic 40.0%
!! GATGGATTGTTTCTCACGTT+TGG - chr2_1:16869561-16869580 None:intergenic 40.0%
CAGTTGAGAAAACCAAGAGA+AGG + chr2_1:16869648-16869667 Msa0198280:CDS 40.0%
TGTTCCACTTGCTTCTAGAT+TGG + chr2_1:16869880-16869899 Msa0198280:CDS 40.0%
!! TGGTTTTTAGAGGGTTCAGT+TGG + chr2_1:16869900-16869919 Msa0198280:CDS 40.0%
AACTCTCTGTAAGCAGCAAT+AGG - chr2_1:16869926-16869945 None:intergenic 40.0%
GCTTACAGAGAGTTGTTGAA+TGG + chr2_1:16869932-16869951 Msa0198280:CDS 40.0%
TTGCAATCGTGACTTTGTGT+TGG + chr2_1:16870629-16870648 Msa0198280:intron 40.0%
! TGGTGATTTTCAGACAAGAG+AGG + chr2_1:16870666-16870685 Msa0198280:intron 40.0%
TATTGATCAAGGATGCAGGA+AGG + chr2_1:16870693-16870712 Msa0198280:CDS 40.0%
ATTGATCAAGGATGCAGGAA+GGG + chr2_1:16870694-16870713 Msa0198280:CDS 40.0%
!! TTGTTGACTCATTGTGTGGA+TGG + chr2_1:16870742-16870761 Msa0198280:CDS 40.0%
!!! TAGTTTTGGCCTTAGGGTTG+AGG - chr2_1:16869345-16869364 None:intergenic 45.0%
!! TTTCTTGGTTTGTGCTGCAG+TGG - chr2_1:16869400-16869419 None:intergenic 45.0%
!! GGAAAGCAAGGTTTGTTGTG+TGG + chr2_1:16869683-16869702 Msa0198280:CDS 45.0%
! ATATTGCTGGTTGGATTGGG+TGG + chr2_1:16869789-16869808 Msa0198280:intron 45.0%
! TATTGCTGGTTGGATTGGGT+GGG + chr2_1:16869790-16869809 Msa0198280:intron 45.0%
GAATGGTGAACTCATTGCCA+AGG + chr2_1:16869949-16869968 Msa0198280:CDS 45.0%
GAAGGGTGATTATGAGAGGA+GGG + chr2_1:16870711-16870730 Msa0198280:CDS 45.0%
!!! TAGTTTTGGCCTTAGGGTTG+AGG - chr2_1:16869345-16869364 None:intergenic 45.0%
!! TTTCTTGGTTTGTGCTGCAG+TGG - chr2_1:16869400-16869419 None:intergenic 45.0%
!! GGAAAGCAAGGTTTGTTGTG+TGG + chr2_1:16869683-16869702 Msa0198280:CDS 45.0%
! ATATTGCTGGTTGGATTGGG+TGG + chr2_1:16869789-16869808 Msa0198280:intron 45.0%
! TATTGCTGGTTGGATTGGGT+GGG + chr2_1:16869790-16869809 Msa0198280:intron 45.0%
GAATGGTGAACTCATTGCCA+AGG + chr2_1:16869949-16869968 Msa0198280:CDS 45.0%
GAAGGGTGATTATGAGAGGA+GGG + chr2_1:16870711-16870730 Msa0198280:CDS 45.0%
GTGGGTTTGGAGAGGTTAGT+TGG - chr2_1:16869323-16869342 None:intergenic 50.0%
!! TTTGGCCTTAGGGTTGAGGT+GGG - chr2_1:16869341-16869360 None:intergenic 50.0%
!!! TTTTGGCCTTAGGGTTGAGG+TGG - chr2_1:16869342-16869361 None:intergenic 50.0%
TGTGCTGCAGTGGATGATGT+TGG - chr2_1:16869390-16869409 None:intergenic 50.0%
! TTCTCTGCATGGTGTTAGGC+CGG - chr2_1:16869525-16869544 None:intergenic 50.0%
TGGAGCGTAAAGCTTGAGAG+AGG - chr2_1:16869597-16869616 None:intergenic 50.0%
!! GGTTTGTTGTGTGGTGCTGA+TGG + chr2_1:16869692-16869711 Msa0198280:CDS 50.0%
TGGGGTGAGTTTATCACACC+AGG + chr2_1:16869752-16869771 Msa0198280:CDS 50.0%
GGGGTGAGTTTATCACACCA+GGG + chr2_1:16869753-16869772 Msa0198280:CDS 50.0%
GCAGGAAGGGTGATTATGAG+AGG + chr2_1:16870707-16870726 Msa0198280:CDS 50.0%
GGAAGGGTGATTATGAGAGG+AGG + chr2_1:16870710-16870729 Msa0198280:CDS 50.0%
GTGGGTTTGGAGAGGTTAGT+TGG - chr2_1:16869323-16869342 None:intergenic 50.0%
!! TTTGGCCTTAGGGTTGAGGT+GGG - chr2_1:16869341-16869360 None:intergenic 50.0%
!!! TTTTGGCCTTAGGGTTGAGG+TGG - chr2_1:16869342-16869361 None:intergenic 50.0%
TGTGCTGCAGTGGATGATGT+TGG - chr2_1:16869390-16869409 None:intergenic 50.0%
! TTCTCTGCATGGTGTTAGGC+CGG - chr2_1:16869525-16869544 None:intergenic 50.0%
TGGAGCGTAAAGCTTGAGAG+AGG - chr2_1:16869597-16869616 None:intergenic 50.0%
!! GGTTTGTTGTGTGGTGCTGA+TGG + chr2_1:16869692-16869711 Msa0198280:CDS 50.0%
TGGGGTGAGTTTATCACACC+AGG + chr2_1:16869752-16869771 Msa0198280:CDS 50.0%
GGGGTGAGTTTATCACACCA+GGG + chr2_1:16869753-16869772 Msa0198280:CDS 50.0%
GCAGGAAGGGTGATTATGAG+AGG + chr2_1:16870707-16870726 Msa0198280:CDS 50.0%
GGAAGGGTGATTATGAGAGG+AGG + chr2_1:16870710-16870729 Msa0198280:CDS 50.0%
! CCTTAGGGTTGAGGTGGGTT+TGG - chr2_1:16869336-16869355 None:intergenic 55.0%
CCAAACCCACCTCAACCCTA+AGG + chr2_1:16869333-16869352 Msa0198280:CDS 55.0%
! TGGTGTTAGGCCGGAGATGT+CGG - chr2_1:16869516-16869535 None:intergenic 55.0%
!!! GTTGCTTTTATGGCCAGCGC+TGG - chr2_1:16869629-16869648 None:intergenic 55.0%
! CCTTAGGGTTGAGGTGGGTT+TGG - chr2_1:16869336-16869355 None:intergenic 55.0%
CCAAACCCACCTCAACCCTA+AGG + chr2_1:16869333-16869352 Msa0198280:CDS 55.0%
! TGGTGTTAGGCCGGAGATGT+CGG - chr2_1:16869516-16869535 None:intergenic 55.0%
!!! GTTGCTTTTATGGCCAGCGC+TGG - chr2_1:16869629-16869648 None:intergenic 55.0%
! GGGTTGAGGTGGGTTTGGAG+AGG - chr2_1:16869331-16869350 None:intergenic 60.0%
! CGGGGAGTGGTGATGAGATG+AGG - chr2_1:16869487-16869506 None:intergenic 60.0%
! GCTGGTTGGATTGGGTGGGT+TGG + chr2_1:16869794-16869813 Msa0198280:intron 60.0%
!! GTTGGATTGGGTGGGTTGGC+AGG + chr2_1:16869798-16869817 Msa0198280:intron 60.0%
! GGGTTGAGGTGGGTTTGGAG+AGG - chr2_1:16869331-16869350 None:intergenic 60.0%
! CGGGGAGTGGTGATGAGATG+AGG - chr2_1:16869487-16869506 None:intergenic 60.0%
! GCTGGTTGGATTGGGTGGGT+TGG + chr2_1:16869794-16869813 Msa0198280:intron 60.0%
!! GTTGGATTGGGTGGGTTGGC+AGG + chr2_1:16869798-16869817 Msa0198280:intron 60.0%
ATGTCGGCGACAGCGGGGAG+TGG - chr2_1:16869500-16869519 None:intergenic 70.0%
CGGAGATGTCGGCGACAGCG+GGG - chr2_1:16869505-16869524 None:intergenic 70.0%
CCGGAGATGTCGGCGACAGC+GGG - chr2_1:16869506-16869525 None:intergenic 70.0%
CCCGCTGTCGCCGACATCTC+CGG + chr2_1:16869503-16869522 Msa0198280:intron 70.0%
GCCGGAGATGTCGGCGACAG+CGG - chr2_1:16869507-16869526 None:intergenic 70.0%
TCCAGACAGCGCTCCAGCGC+TGG + chr2_1:16869613-16869632 Msa0198280:CDS 70.0%
ATGTCGGCGACAGCGGGGAG+TGG - chr2_1:16869500-16869519 None:intergenic 70.0%
CGGAGATGTCGGCGACAGCG+GGG - chr2_1:16869505-16869524 None:intergenic 70.0%
CCGGAGATGTCGGCGACAGC+GGG - chr2_1:16869506-16869525 None:intergenic 70.0%
CCCGCTGTCGCCGACATCTC+CGG + chr2_1:16869503-16869522 Msa0198280:intron 70.0%
GCCGGAGATGTCGGCGACAG+CGG - chr2_1:16869507-16869526 None:intergenic 70.0%
TCCAGACAGCGCTCCAGCGC+TGG + chr2_1:16869613-16869632 Msa0198280:CDS 70.0%
!! GCCAGCGCTGGAGCGCTGTC+TGG - chr2_1:16869617-16869636 None:intergenic 75.0%
!! GCCAGCGCTGGAGCGCTGTC+TGG - chr2_1:16869617-16869636 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 16869305 16871027 16869305 ID=Msa0198280;Name=Msa0198280
chr2_1 mRNA 16869305 16871027 16869305 ID=Msa0198280-mRNA-1;Parent=Msa0198280;Name=Msa0198280-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0.25|1|0|0|4|232|237
chr2_1 exon 16869305 16869508 16869305 ID=Msa0198280-mRNA-1:exon:6967;Parent=Msa0198280-mRNA-1
chr2_1 exon 16869569 16869807 16869569 ID=Msa0198280-mRNA-1:exon:6968;Parent=Msa0198280-mRNA-1
chr2_1 exon 16869820 16869973 16869820 ID=Msa0198280-mRNA-1:exon:6969;Parent=Msa0198280-mRNA-1
chr2_1 exon 16870679 16871027 16870679 ID=Msa0198280-mRNA-1:exon:6970;Parent=Msa0198280-mRNA-1
chr2_1 CDS 16869305 16869508 16869305 ID=Msa0198280-mRNA-1:cds;Parent=Msa0198280-mRNA-1
chr2_1 CDS 16869569 16869807 16869569 ID=Msa0198280-mRNA-1:cds;Parent=Msa0198280-mRNA-1
chr2_1 CDS 16869820 16869973 16869820 ID=Msa0198280-mRNA-1:cds;Parent=Msa0198280-mRNA-1
chr2_1 CDS 16870679 16870795 16870679 ID=Msa0198280-mRNA-1:cds;Parent=Msa0198280-mRNA-1
chr2_1 three_prime_UTR 16870796 16871027 16870796 ID=Msa0198280-mRNA-1:three_prime_utr;Parent=Msa0198280-mRNA-1
Gene Sequence

>Msa0198280

ATGTCTCTAACAATTCCAACTAACCTCTCCAAACCCACCTCAACCCTAAGGCCAAAACTACCTCAAAAACCAAAACTCTCAACCAACATCATCCACTGCAGCACAAACCAAGAAAAACCAACCAACGATGTAAACTCAAATCTAAAAGCATTCTCAGCAGCACTAGCACTCTCATCAATCCTCATCTCATCACCACTCCCCGCTAAACAATCCATCAAAAAGCTTGAATCCTCTCTCAAGCTTTACGCTCCAGACAGCGCTCCAGCGCTGGCCATAAAAGCAACAGTTGAGAAAACCAAGAGAAGGTTTGATAACTATGGAAAGCAAGGTTTGTTGTGTGGTGCTGATGGTTTACCACATTTGATAGTGAATGGTGATCAAAGACATTGGGGTGAGTTTATCACACCAGGGATATTGTTTTTGTATATTGCTGGTTGGATTGGGAGTTACTTGATTGCTATTCGTGACGAGAAGAAACCTACACAGAAAGAGATTATTATTGATGTTCCACTTGCTTCTAGATTGGTTTTTAGAGGGTTCAGTTGGCCTATTGCTGCTTACAGAGAGTTGTTGAATGGTGAACTCATTGCCAAGGATACAAGAGAGGATGATATTGATCAAGGATGCAGGAAGGGTGATTATGAGAGGAGGGTGCTTTTATTGTTGACTCATTGTGTGGATGGATCTTATAATATTTATGCTCTCAAATTGTAA

Protein sequence

>Msa0198280

MSLTIPTNLSKPTSTLRPKLPQKPKLSTNIIHCSTNQEKPTNDVNSNLKAFSAALALSSILISSPLPAKQSIKKLESSLKLYAPDSAPALAIKATVEKTKRRFDNYGKQGLLCGADGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGSYLIAIRDEKKPTQKEIIIDVPLASRLVFRGFSWPIAAYRELLNGELIAKDTREDDIDQGCRKGDYERRVLLLLTHCVDGSYNIYALKL*