AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1130850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130850 MtrunA17_Chr7g0276381 91.279 172 8 3 15 185 15 180 1.12e-109 310
Msa1130850 MtrunA17_Chr8g0345861 56.962 158 52 3 25 182 27 168 4.58e-50 159
Msa1130850 MtrunA17_Chr4g0004811 35.172 145 86 1 38 182 9 145 2.81e-25 95.5
Msa1130850 MtrunA17_Chr7g0275281 31.410 156 89 3 29 184 24 161 3.77e-21 85.1
Msa1130850 MtrunA17_Chr5g0412411 29.661 118 78 2 69 182 67 183 1.65e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130850 AT2G46820.2 63.265 147 45 2 36 182 35 172 1.62e-56 176
Msa1130850 AT2G46820.1 63.265 147 45 2 36 182 35 172 1.62e-56 176
Msa1130850 AT1G52220.1 47.525 101 52 1 82 182 56 155 1.84e-26 99.0
Msa1130850 AT1G52220.2 47.525 101 51 2 82 182 56 154 1.08e-24 94.4
Msa1130850 AT4G01150.1 32.919 161 87 4 25 182 20 162 4.12e-23 90.5
Msa1130850 AT4G38100.1 35.789 95 58 1 91 185 101 192 1.17e-14 69.3
Msa1130850 AT4G38100.2 35.789 95 58 1 91 185 61 152 1.88e-14 67.8
Msa1130850 AT1G52220.4 46.479 71 37 1 82 152 56 125 2.69e-13 64.3
Msa1130850 AT1G52220.3 52.000 50 24 0 133 182 77 126 2.01e-12 61.6

Find 75 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATAGTCTTTAGAAATTC+TGG 0.176189 7_3:+83130759 None:intergenic
GATAGGCTTCCTTTAATTCC+TGG 0.266011 7_3:-83129154 Msa1130850:CDS
TATATAGTTCTCACACAAAA+TGG 0.281786 7_3:+83128592 None:intergenic
TCTTCATTCACTCTTATTGA+TGG 0.283095 7_3:-83131091 Msa1130850:CDS
ACAGAAAGCGGTGGTCTTCC+AGG 0.290167 7_3:+83130982 None:intergenic
TCTCAATTGTTTACCGCAAA+TGG 0.297286 7_3:+83128679 None:intergenic
GTTGCATTATGGGGCTCAGC+TGG 0.318460 7_3:-83129285 Msa1130850:CDS
TCAAGAACCCCAGGAATTAA+AGG 0.320013 7_3:+83129145 None:intergenic
TAGCAGGTACGGTTGCATTA+TGG 0.322048 7_3:-83129296 Msa1130850:CDS
AGCAGGTACGGTTGCATTAT+GGG 0.357874 7_3:-83129295 Msa1130850:CDS
ATAGGCTTCCTTTAATTCCT+GGG 0.369347 7_3:-83129153 Msa1130850:CDS
AAGAGTGAATGAAGAGAAAG+TGG 0.378344 7_3:+83131099 None:intergenic
TGGTCTTCCAGGGACGAGTA+TGG 0.381671 7_3:+83130993 None:intergenic
TAAACAATTGAGAGAGATAA+TGG 0.386475 7_3:-83128669 Msa1130850:three_prime_UTR
CCAAAGTGTGGCATAGCATA+TGG 0.394362 7_3:-83131250 Msa1130850:five_prime_UTR
GCTTTGATACGCAAAATAAA+AGG 0.394589 7_3:-83128883 Msa1130850:CDS
TTGCATTATGGGGCTCAGCT+GGG 0.412672 7_3:-83129284 Msa1130850:CDS
GAAAGTGGAAGATGAGGCTG+AGG 0.422883 7_3:+83131114 None:intergenic
CTCAATTGTTTACCGCAAAT+GGG 0.433433 7_3:+83128680 None:intergenic
AGCCACTCATTTCTTTCATA+CGG 0.453220 7_3:+83131276 None:intergenic
ATAATCTATCTGTATTGTAT+TGG 0.457171 7_3:-83131170 Msa1130850:five_prime_UTR
TGATGAAACAGGCTATTGAT+AGG 0.459015 7_3:-83129171 Msa1130850:intron
ACCGATCTGGCTTGAAAACT+AGG 0.468356 7_3:+83128984 None:intergenic
TGGAGAAGCAGAGTGTCTGC+AGG 0.469794 7_3:+83131060 None:intergenic
TACTCTAACATAACATGTAT+AGG 0.470416 7_3:-83128556 Msa1130850:three_prime_UTR
TTCTACGGTTATCCCATTTG+CGG 0.475391 7_3:-83128692 Msa1130850:three_prime_UTR
CCATATGCTATGCCACACTT+TGG 0.480950 7_3:+83131250 None:intergenic
TGCTCTAGCTGTAGCAGGTA+CGG 0.487789 7_3:-83129307 Msa1130850:CDS
AACTCAAATTAACAAGCAAA+TGG 0.489389 7_3:-83131140 Msa1130850:exon
TGCATTATGGGGCTCAGCTG+GGG 0.492851 7_3:-83129283 Msa1130850:CDS
TGGGACTGAACAGGTGGAGG+GGG 0.502807 7_3:+83131013 None:intergenic
ATCTGCCTCTGTTTCTGTTG+TGG 0.505718 7_3:+83130836 None:intergenic
TTCAGTCCCATACTCGTCCC+TGG 0.506421 7_3:-83131000 Msa1130850:CDS
CTCGTAGGCATTGGCTACAC+TGG 0.508236 7_3:-83129121 Msa1130850:CDS
GTTCTTGAACTCGTAGGCAT+TGG 0.511626 7_3:-83129130 Msa1130850:CDS
TTGCTTGTTAATTTGAGTTG+AGG 0.511958 7_3:+83131144 None:intergenic
GGACGAGTATGGGACTGAAC+AGG 0.517757 7_3:+83131004 None:intergenic
TAGATTACATTTGCATAACA+TGG 0.518324 7_3:+83128774 None:intergenic
TGCTCGCAATGTTATGTCCA+TGG 0.518500 7_3:-83130868 Msa1130850:CDS
AGTGGAAGATGAGGCTGAGG+AGG 0.528576 7_3:+83131117 None:intergenic
GTGAGTGCTCTAGCTGTAGC+AGG 0.528606 7_3:-83129312 Msa1130850:CDS
GGCACTGTTAAAGACATCAC+TGG 0.529095 7_3:-83128862 Msa1130850:CDS
GGTCTTCCAGGGACGAGTAT+GGG 0.539747 7_3:+83130994 None:intergenic
AGAATCAGTGACAGTAGTAC+TGG 0.542464 7_3:+83130782 None:intergenic
AAGAGCATAGCATACCGATC+TGG 0.544761 7_3:+83128971 None:intergenic
GTATGGGACTGAACAGGTGG+AGG 0.553903 7_3:+83131010 None:intergenic
TAGGCTTCCTTTAATTCCTG+GGG 0.554551 7_3:-83129152 Msa1130850:CDS
TGTTGTGGTACTTGAAGCCA+TGG 0.559345 7_3:+83130851 None:intergenic
AGTTGAGGCAACCTCTGTTG+TGG 0.572988 7_3:+83130809 None:intergenic
TATGGGACTGAACAGGTGGA+GGG 0.576384 7_3:+83131011 None:intergenic
GGATAGTGTCTCTGCTGACT+TGG 0.581587 7_3:+83131297 None:intergenic
AGATTACATTTGCATAACAT+GGG 0.583347 7_3:+83128775 None:intergenic
TGTATTTGACTTACAGAAAG+CGG 0.583422 7_3:+83130970 None:intergenic
CAGAAAGCGGTGGTCTTCCA+GGG 0.585352 7_3:+83130983 None:intergenic
GATCGACAGCTAAAATACAC+TGG 0.596735 7_3:-83128839 Msa1130850:exon
CGAGTATGGGACTGAACAGG+TGG 0.598195 7_3:+83131007 None:intergenic
AGTAGTACTGGTGTCAGTTG+AGG 0.598742 7_3:+83130794 None:intergenic
ATGGGACTGAACAGGTGGAG+GGG 0.599012 7_3:+83131012 None:intergenic
GCAGGTACGGTTGCATTATG+GGG 0.601282 7_3:-83129294 Msa1130850:CDS
TGAAGAGAAAGTGGAAGATG+AGG 0.604075 7_3:+83131108 None:intergenic
AGTTCTCACACAAAATGGAA+TGG 0.605682 7_3:+83128597 None:intergenic
ATGTTAATTAGATCTACAGA+TGG 0.605965 7_3:+83131220 None:intergenic
GTTGGAAGGCTCACACATTG+TGG 0.610597 7_3:+83131040 None:intergenic
CCTGGGGTTCTTGAACTCGT+AGG 0.612235 7_3:-83129136 Msa1130850:CDS
CCTACGAGTTCAAGAACCCC+AGG 0.617642 7_3:+83129136 None:intergenic
GGAGAAGCAGAGTGTCTGCA+GGG 0.624844 7_3:+83131061 None:intergenic
ATCGACAGCTAAAATACACT+GGG 0.636797 7_3:-83128838 Msa1130850:exon
GCACTGTTAAAGACATCACT+GGG 0.652022 7_3:-83128861 Msa1130850:CDS
GGCAGATGCAGCCACAACAG+AGG 0.654208 7_3:-83130820 Msa1130850:CDS
GACAGCTAAAATACACTGGG+TGG 0.660584 7_3:-83128835 Msa1130850:exon
TGAGTGGCTCATCCAAAGTG+TGG 0.671961 7_3:-83131262 Msa1130850:five_prime_UTR
ATCCGTATGAAAGAAATGAG+TGG 0.680937 7_3:-83131278 Msa1130850:five_prime_UTR
AAGTACCACAACAGAAACAG+AGG 0.689454 7_3:-83130841 Msa1130850:CDS
ATTTGACTTACAGAAAGCGG+TGG 0.698122 7_3:+83130973 None:intergenic
GAAGCAGAGTGTCTGCAGGG+AGG 0.716854 7_3:+83131064 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr7_3:83129169-83129188 Msa1130850:intron 0.0%
!! TAAATGTAAAATTACATAAA+AGG - chr7_3:83129368-83129387 Msa1130850:intron 10.0%
!! AATATATATTATATGCAAAA+AGG + chr7_3:83130619-83130638 None:intergenic 10.0%
!! AATTAATAATATATAATTGC+AGG - chr7_3:83130947-83130966 Msa1130850:intron 10.0%
!! ATTAATAATATATAATTGCA+GGG - chr7_3:83130948-83130967 Msa1130850:intron 10.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr7_3:83129457-83129476 Msa1130850:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr7_3:83129522-83129541 Msa1130850:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr7_3:83129523-83129542 Msa1130850:intron 15.0%
!! TTTCATTAAAATAACTGAAA+TGG + chr7_3:83129827-83129846 None:intergenic 15.0%
!! AATGAGATATTAAATGAATA+AGG - chr7_3:83130087-83130106 Msa1130850:intron 15.0%
!!! GTAATATTTATTGATTGTAT+TGG - chr7_3:83130148-83130167 Msa1130850:intron 15.0%
!!! GGTTTTAATTAAAATAACAA+GGG - chr7_3:83130240-83130259 Msa1130850:intron 15.0%
!! ATAATCTATCTGTATTGTAT+TGG - chr7_3:83128686-83128705 Msa1130850:three_prime_UTR 20.0%
!! ATATAATTGAATTTGTGTGT+TGG - chr7_3:83128942-83128961 Msa1130850:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr7_3:83129482-83129501 Msa1130850:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr7_3:83129592-83129611 Msa1130850:intron 20.0%
!! GTAAAGTATAAAAACTGAAA+TGG + chr7_3:83129653-83129672 None:intergenic 20.0%
!! TAAATAACTAAGGGTAATAT+TGG + chr7_3:83130045-83130064 None:intergenic 20.0%
!! TCAAAAAGTGACAATTAAAA+AGG - chr7_3:83130184-83130203 Msa1130850:intron 20.0%
!! TAATATATAAAGGGTAAAGT+TGG - chr7_3:83130218-83130237 Msa1130850:intron 20.0%
!! AATATATAAAGGGTAAAGTT+GGG - chr7_3:83130219-83130238 Msa1130850:intron 20.0%
!!! GGGTTTTAATTAAAATAACA+AGG - chr7_3:83130239-83130258 Msa1130850:intron 20.0%
!! TAAAATAACAAGGGTAATAA+TGG - chr7_3:83130249-83130268 Msa1130850:intron 20.0%
!! TATATTATATGCAAAAAGGA+AGG + chr7_3:83130615-83130634 None:intergenic 20.0%
!! AATAATCTGTTTCCATAATT+TGG - chr7_3:83130912-83130931 Msa1130850:intron 20.0%
!!! AGAAGTTACATTTAATTTTC+TGG + chr7_3:83131109-83131128 None:intergenic 20.0%
!! TCAATAAAAAGCAATTTCTA+CGG - chr7_3:83131149-83131168 Msa1130850:five_prime_UTR 20.0%
!!! AATGGAACAATATTTTATCT+TGG - chr7_3:83131205-83131224 Msa1130850:five_prime_UTR 20.0%
! ATGTTAATTAGATCTACAGA+TGG + chr7_3:83128639-83128658 None:intergenic 25.0%
! AACTCAAATTAACAAGCAAA+TGG - chr7_3:83128716-83128735 Msa1130850:three_prime_UTR 25.0%
!! TGTATAGTCTTTAGAAATTC+TGG + chr7_3:83129100-83129119 None:intergenic 25.0%
! ATATATATATAGGCTCTGTT+TGG - chr7_3:83129187-83129206 Msa1130850:intron 25.0%
!! GATAAGCTAATTAAAGTGTT+TGG - chr7_3:83129320-83129339 Msa1130850:CDS 25.0%
!! AAAGTGTTTGGTAAAAATAG+CGG - chr7_3:83129332-83129351 Msa1130850:CDS 25.0%
! TGTATAAATAAAGGAGAAAG+TGG - chr7_3:83129466-83129485 Msa1130850:intron 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr7_3:83129481-83129500 Msa1130850:intron 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG - chr7_3:83129569-83129588 Msa1130850:intron 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr7_3:83129570-83129589 Msa1130850:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr7_3:83129591-83129610 Msa1130850:intron 25.0%
! ATTGTTACTACAAGAAAAAC+TGG - chr7_3:83129737-83129756 Msa1130850:intron 25.0%
! TTACCCTTAGTTATTTATTG+TGG - chr7_3:83130048-83130067 Msa1130850:intron 25.0%
! TCTCCACAATAAATAACTAA+GGG + chr7_3:83130054-83130073 None:intergenic 25.0%
! AAGTGACAATTAAAAAGGAA+CGG - chr7_3:83130189-83130208 Msa1130850:intron 25.0%
! TTGACAAAAAAAACTCTGTT+TGG + chr7_3:83130397-83130416 None:intergenic 25.0%
!! TTATAAGCTATAAGCTCTTT+TGG - chr7_3:83130423-83130442 Msa1130850:intron 25.0%
! CAATCTATTGAACCAAATTA+TGG + chr7_3:83130927-83130946 None:intergenic 25.0%
! AATAATATATAATTGCAGGG+AGG - chr7_3:83130951-83130970 Msa1130850:intron 25.0%
! AGATTACATTTGCATAACAT+GGG + chr7_3:83131084-83131103 None:intergenic 25.0%
! TAGATTACATTTGCATAACA+TGG + chr7_3:83131085-83131104 None:intergenic 25.0%
! TAAACAATTGAGAGAGATAA+TGG - chr7_3:83131187-83131206 Msa1130850:five_prime_UTR 25.0%
! TATATAGTTCTCACACAAAA+TGG + chr7_3:83131267-83131286 None:intergenic 25.0%
! TACTCTAACATAACATGTAT+AGG - chr7_3:83131300-83131319 Msa1130850:five_prime_UTR 25.0%
!! TTGCTTGTTAATTTGAGTTG+AGG + chr7_3:83128715-83128734 None:intergenic 30.0%
TCTTCATTCACTCTTATTGA+TGG - chr7_3:83128765-83128784 Msa1130850:three_prime_UTR 30.0%
! TGTATTTGACTTACAGAAAG+CGG + chr7_3:83128889-83128908 None:intergenic 30.0%
GACGTAATATACATAAGAAC+TGG - chr7_3:83129865-83129884 Msa1130850:intron 30.0%
AAGTGACACTTAAAAAGGAA+CGG + chr7_3:83129953-83129972 None:intergenic 30.0%
!!! TCCTTTTTAAGTGTCACTTT+TGG - chr7_3:83129954-83129973 Msa1130850:intron 30.0%
TCCAAAAGTGACACTTAAAA+AGG + chr7_3:83129958-83129977 None:intergenic 30.0%
CTCTCCACAATAAATAACTA+AGG + chr7_3:83130055-83130074 None:intergenic 30.0%
ACGGAGGTAGTAATATATAA+AGG - chr7_3:83130208-83130227 Msa1130850:intron 30.0%
CGGAGGTAGTAATATATAAA+GGG - chr7_3:83130209-83130228 Msa1130850:intron 30.0%
ACTCAACACACATATACTAT+GGG + chr7_3:83130466-83130485 None:intergenic 30.0%
AACTCAACACACATATACTA+TGG + chr7_3:83130467-83130486 None:intergenic 30.0%
ATAGTATATGTGTGTTGAGT+TGG - chr7_3:83130466-83130485 Msa1130850:intron 30.0%
GATTGGATGTAATGTATAGT+GGG - chr7_3:83130498-83130517 Msa1130850:intron 30.0%
GCTTTGATACGCAAAATAAA+AGG - chr7_3:83130973-83130992 Msa1130850:intron 30.0%
ATCCGTATGAAAGAAATGAG+TGG - chr7_3:83128578-83128597 Msa1130850:three_prime_UTR 35.0%
AGCCACTCATTTCTTTCATA+CGG + chr7_3:83128583-83128602 None:intergenic 35.0%
AAGAGTGAATGAAGAGAAAG+TGG + chr7_3:83128760-83128779 None:intergenic 35.0%
GCTCTGTTTGGTAAAAATAG+CGG - chr7_3:83129199-83129218 Msa1130850:intron 35.0%
CAAAGTAGGTCAATTAAACC+GGG + chr7_3:83129422-83129441 None:intergenic 35.0%
CCAAAGTAGGTCAATTAAAC+CGG + chr7_3:83129423-83129442 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr7_3:83129436-83129455 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr7_3:83129605-83129624 Msa1130850:intron 35.0%
ACGCAGGGAAAAAAATATAG+AGG - chr7_3:83129890-83129909 Msa1130850:intron 35.0%
TGACAATTAAAAAGGAACGG+AGG - chr7_3:83130192-83130211 Msa1130850:intron 35.0%
! TAAGCTATAAGCTCTTTTGG+TGG - chr7_3:83130426-83130445 Msa1130850:intron 35.0%
ACATATACTATGGGTCTGTT+TGG + chr7_3:83130457-83130476 None:intergenic 35.0%
!! ATATGTGTGTTGAGTTGGAT+TGG - chr7_3:83130471-83130490 Msa1130850:intron 35.0%
GGATTGGATGTAATGTATAG+TGG - chr7_3:83130497-83130516 Msa1130850:intron 35.0%
TGATGAAACAGGCTATTGAT+AGG - chr7_3:83130685-83130704 Msa1130850:intron 35.0%
ATAGGCTTCCTTTAATTCCT+GGG - chr7_3:83130703-83130722 Msa1130850:intron 35.0%
ATCTGCAGAAGATACAAAGT+AGG + chr7_3:83130769-83130788 None:intergenic 35.0%
AAGAAGATACGATACGATAC+AGG + chr7_3:83130827-83130846 None:intergenic 35.0%
ATCGACAGCTAAAATACACT+GGG - chr7_3:83131018-83131037 Msa1130850:CDS 35.0%
GCATAACATGGGAAAAAGTA+TGG + chr7_3:83131073-83131092 None:intergenic 35.0%
CTCAATTGTTTACCGCAAAT+GGG + chr7_3:83131179-83131198 None:intergenic 35.0%
TCTCAATTGTTTACCGCAAA+TGG + chr7_3:83131180-83131199 None:intergenic 35.0%
AGTTCTCACACAAAATGGAA+TGG + chr7_3:83131262-83131281 None:intergenic 35.0%
TGAAGAGAAAGTGGAAGATG+AGG + chr7_3:83128751-83128770 None:intergenic 40.0%
! ATTTGACTTACAGAAAGCGG+TGG + chr7_3:83128886-83128905 None:intergenic 40.0%
AAGTACCACAACAGAAACAG+AGG - chr7_3:83129015-83129034 Msa1130850:intron 40.0%
AGAATCAGTGACAGTAGTAC+TGG + chr7_3:83129077-83129096 None:intergenic 40.0%
CCGGTTTAATTGACCTACTT+TGG - chr7_3:83129420-83129439 Msa1130850:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr7_3:83129606-83129625 Msa1130850:intron 40.0%
TACATAAGAACTGGAAACGC+AGG - chr7_3:83129874-83129893 Msa1130850:intron 40.0%
ACATAAGAACTGGAAACGCA+GGG - chr7_3:83129875-83129894 Msa1130850:intron 40.0%
GACACTTAAAAAGGAACGGA+GGG + chr7_3:83129949-83129968 None:intergenic 40.0%
TGACACTTAAAAAGGAACGG+AGG + chr7_3:83129950-83129969 None:intergenic 40.0%
CTATAAGCTCAAACGCTACT+TGG - chr7_3:83130295-83130314 Msa1130850:intron 40.0%
TACTATGGGTCTGTTTGGTA+AGG + chr7_3:83130452-83130471 None:intergenic 40.0%
!! TGTGTTGAGTTGGATTGGAT+TGG - chr7_3:83130476-83130495 Msa1130850:intron 40.0%
! TGAGTTGGATTGGATTGGAT+TGG - chr7_3:83130481-83130500 Msa1130850:intron 40.0%
GATAGGCTTCCTTTAATTCC+TGG - chr7_3:83130702-83130721 Msa1130850:intron 40.0%
TAGGCTTCCTTTAATTCCTG+GGG - chr7_3:83130704-83130723 Msa1130850:intron 40.0%
TCAAGAACCCCAGGAATTAA+AGG + chr7_3:83130714-83130733 None:intergenic 40.0%
TCGTATCTTCTTCTTTGCAG+TGG - chr7_3:83130835-83130854 Msa1130850:CDS 40.0%
!! ACCTAGTTTTCAAGCCAGAT+CGG - chr7_3:83130871-83130890 Msa1130850:CDS 40.0%
GCACTGTTAAAGACATCACT+GGG - chr7_3:83130995-83131014 Msa1130850:CDS 40.0%
GATCGACAGCTAAAATACAC+TGG - chr7_3:83131017-83131036 Msa1130850:CDS 40.0%
TTCTACGGTTATCCCATTTG+CGG - chr7_3:83131164-83131183 Msa1130850:five_prime_UTR 40.0%
CCATATGCTATGCCACACTT+TGG + chr7_3:83128609-83128628 None:intergenic 45.0%
CCAAAGTGTGGCATAGCATA+TGG - chr7_3:83128606-83128625 Msa1130850:three_prime_UTR 45.0%
!! GTGTGTTGGTTGATTCACTC+AGG - chr7_3:83128956-83128975 Msa1130850:intron 45.0%
! GTTGGTTGATTCACTCAGGT+CGG - chr7_3:83128960-83128979 Msa1130850:intron 45.0%
TGCTCGCAATGTTATGTCCA+TGG - chr7_3:83128988-83129007 Msa1130850:CDS 45.0%
TGTTGTGGTACTTGAAGCCA+TGG + chr7_3:83129008-83129027 None:intergenic 45.0%
!! ATCTGCCTCTGTTTCTGTTG+TGG + chr7_3:83129023-83129042 None:intergenic 45.0%
!! AGTAGTACTGGTGTCAGTTG+AGG + chr7_3:83129065-83129084 None:intergenic 45.0%
GTAGGTCAATTAAACCGGGA+CGG + chr7_3:83129418-83129437 None:intergenic 45.0%
TAGCAGGTACGGTTGCATTA+TGG - chr7_3:83130560-83130579 Msa1130850:intron 45.0%
AGCAGGTACGGTTGCATTAT+GGG - chr7_3:83130561-83130580 Msa1130850:intron 45.0%
GCATCTGCATCTGATGAAAC+AGG - chr7_3:83130674-83130693 Msa1130850:intron 45.0%
GTTCTTGAACTCGTAGGCAT+TGG - chr7_3:83130726-83130745 Msa1130850:intron 45.0%
! ACCGATCTGGCTTGAAAACT+AGG + chr7_3:83130875-83130894 None:intergenic 45.0%
! AAGAGCATAGCATACCGATC+TGG + chr7_3:83130888-83130907 None:intergenic 45.0%
GGCACTGTTAAAGACATCAC+TGG - chr7_3:83130994-83131013 Msa1130850:CDS 45.0%
GACAGCTAAAATACACTGGG+TGG - chr7_3:83131021-83131040 Msa1130850:CDS 45.0%
! GGATAGTGTCTCTGCTGACT+TGG + chr7_3:83128562-83128581 None:intergenic 50.0%
TGAGTGGCTCATCCAAAGTG+TGG - chr7_3:83128594-83128613 Msa1130850:three_prime_UTR 50.0%
GAAAGTGGAAGATGAGGCTG+AGG + chr7_3:83128745-83128764 None:intergenic 50.0%
GTTGGAAGGCTCACACATTG+TGG + chr7_3:83128819-83128838 None:intergenic 50.0%
TATGGGACTGAACAGGTGGA+GGG + chr7_3:83128848-83128867 None:intergenic 50.0%
AGTTGAGGCAACCTCTGTTG+TGG + chr7_3:83129050-83129069 None:intergenic 50.0%
TTCATATACTCCCTCCGTCC+CGG - chr7_3:83129401-83129420 Msa1130850:intron 50.0%
GTCAATTAAACCGGGACGGA+GGG + chr7_3:83129414-83129433 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr7_3:83129610-83129629 Msa1130850:intron 50.0%
AAATGTTACTCCCTCCGTCC+CGG + chr7_3:83129627-83129646 None:intergenic 50.0%
TGCTCTAGCTGTAGCAGGTA+CGG - chr7_3:83130549-83130568 Msa1130850:intron 50.0%
GCAGGTACGGTTGCATTATG+GGG - chr7_3:83130562-83130581 Msa1130850:intron 50.0%
TTGCATTATGGGGCTCAGCT+GGG - chr7_3:83130572-83130591 Msa1130850:intron 50.0%
AGTGGAAGATGAGGCTGAGG+AGG + chr7_3:83128742-83128761 None:intergenic 55.0%
! GGAGAAGCAGAGTGTCTGCA+GGG + chr7_3:83128798-83128817 None:intergenic 55.0%
! TGGAGAAGCAGAGTGTCTGC+AGG + chr7_3:83128799-83128818 None:intergenic 55.0%
ATGGGACTGAACAGGTGGAG+GGG + chr7_3:83128847-83128866 None:intergenic 55.0%
GTATGGGACTGAACAGGTGG+AGG + chr7_3:83128849-83128868 None:intergenic 55.0%
CGAGTATGGGACTGAACAGG+TGG + chr7_3:83128852-83128871 None:intergenic 55.0%
GGACGAGTATGGGACTGAAC+AGG + chr7_3:83128855-83128874 None:intergenic 55.0%
TTCAGTCCCATACTCGTCCC+TGG - chr7_3:83128856-83128875 Msa1130850:CDS 55.0%
GGTCTTCCAGGGACGAGTAT+GGG + chr7_3:83128865-83128884 None:intergenic 55.0%
TGGTCTTCCAGGGACGAGTA+TGG + chr7_3:83128866-83128885 None:intergenic 55.0%
CAGAAAGCGGTGGTCTTCCA+GGG + chr7_3:83128876-83128895 None:intergenic 55.0%
ACAGAAAGCGGTGGTCTTCC+AGG + chr7_3:83128877-83128896 None:intergenic 55.0%
GGTCAATTAAACCGGGACGG+AGG + chr7_3:83129415-83129434 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr7_3:83129614-83129633 Msa1130850:intron 55.0%
GTGAGTGCTCTAGCTGTAGC+AGG - chr7_3:83130544-83130563 Msa1130850:intron 55.0%
GTTGCATTATGGGGCTCAGC+TGG - chr7_3:83130571-83130590 Msa1130850:intron 55.0%
TGCATTATGGGGCTCAGCTG+GGG - chr7_3:83130573-83130592 Msa1130850:intron 55.0%
CCTACGAGTTCAAGAACCCC+AGG + chr7_3:83130723-83130742 None:intergenic 55.0%
CCTGGGGTTCTTGAACTCGT+AGG - chr7_3:83130720-83130739 Msa1130850:intron 55.0%
!! CTCGTAGGCATTGGCTACAC+TGG - chr7_3:83130735-83130754 Msa1130850:intron 55.0%
! GAAGCAGAGTGTCTGCAGGG+AGG + chr7_3:83128795-83128814 None:intergenic 60.0%
GTGGAGGGGGAAGAGTTGGA+AGG + chr7_3:83128833-83128852 None:intergenic 60.0%
ACAGGTGGAGGGGGAAGAGT+TGG + chr7_3:83128837-83128856 None:intergenic 60.0%
TGGGACTGAACAGGTGGAGG+GGG + chr7_3:83128846-83128865 None:intergenic 60.0%
GGCAGATGCAGCCACAACAG+AGG - chr7_3:83129036-83129055 Msa1130850:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr7_3:83129613-83129632 Msa1130850:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 83128550 83131328 83128550 ID=Msa1130850;Name=Msa1130850
chr7_3 mRNA 83128550 83131328 83128550 ID=Msa1130850-mRNA-1;Parent=Msa1130850;Name=Msa1130850-mRNA-1;_AED=0.09;_eAED=0.09;_QI=185|1|1|1|1|1|6|299|185
chr7_3 exon 83128550 83128909 83128550 ID=Msa1130850-mRNA-1:exon:24699;Parent=Msa1130850-mRNA-1
chr7_3 exon 83128986 83129023 83128986 ID=Msa1130850-mRNA-1:exon:24698;Parent=Msa1130850-mRNA-1
chr7_3 exon 83129120 83129182 83129120 ID=Msa1130850-mRNA-1:exon:24697;Parent=Msa1130850-mRNA-1
chr7_3 exon 83129275 83129361 83129275 ID=Msa1130850-mRNA-1:exon:24696;Parent=Msa1130850-mRNA-1
chr7_3 exon 83130752 83130900 83130752 ID=Msa1130850-mRNA-1:exon:24695;Parent=Msa1130850-mRNA-1
chr7_3 exon 83130984 83131328 83130984 ID=Msa1130850-mRNA-1:exon:24694;Parent=Msa1130850-mRNA-1
chr7_3 five_prime_UTR 83131144 83131328 83131144 ID=Msa1130850-mRNA-1:five_prime_utr;Parent=Msa1130850-mRNA-1
chr7_3 CDS 83130984 83131143 83130984 ID=Msa1130850-mRNA-1:cds;Parent=Msa1130850-mRNA-1
chr7_3 CDS 83130752 83130900 83130752 ID=Msa1130850-mRNA-1:cds;Parent=Msa1130850-mRNA-1
chr7_3 CDS 83129275 83129361 83129275 ID=Msa1130850-mRNA-1:cds;Parent=Msa1130850-mRNA-1
chr7_3 CDS 83129120 83129182 83129120 ID=Msa1130850-mRNA-1:cds;Parent=Msa1130850-mRNA-1
chr7_3 CDS 83128986 83129023 83128986 ID=Msa1130850-mRNA-1:cds;Parent=Msa1130850-mRNA-1
chr7_3 CDS 83128849 83128909 83128849 ID=Msa1130850-mRNA-1:cds;Parent=Msa1130850-mRNA-1
chr7_3 three_prime_UTR 83128550 83128848 83128550 ID=Msa1130850-mRNA-1:three_prime_utr;Parent=Msa1130850-mRNA-1
Gene Sequence

>Msa1130850

ATGGCCTCCTCAGCCTCATCTTCCACTTTCTCTTCATTCACTCTTATTGATGGAAAGCCTCCCTGCAGACACTCTGCTTCTCCACAATGTGTGAGCCTTCCAACTCTTCCCCCTCCACCTGTTCAGTCCCATACTCGTCCCTGGAAGACCACCGCTTTCTGTCGGAAGATTGCTCGCAATGTTATGTCCATGGCTTCAAGTACCACAACAGAAACAGAGGCAGATGCAGCCACAACAGAGGTTGCCTCAACTGACACCAGTACTACTGTCACTGATTCTCCAGAATTTCTAAAGACTATACAACAAACTTGGGATAAAGTTGAAGACAAGTATGCAGTGAGTGCTCTAGCTGTAGCAGGTACGGTTGCATTATGGGGCTCAGCTGGGGTGATCTCAGCTATTGATAGGCTTCCTTTAATTCCTGGGGTTCTTGAACTCGTAGGCATTGGCTACACTGGCTGGTTTGCATACAAGAACCTAGTTTTCAAGCCAGATCGGGAGGCTTTGATACGCAAAATAAAAGGCACTGTTAAAGACATCACTGGGATCGACAGCTAA

Protein sequence

>Msa1130850

MASSASSSTFSSFTLIDGKPPCRHSASPQCVSLPTLPPPPVQSHTRPWKTTAFCRKIARNVMSMASSTTTETEADAATTEVASTDTSTTVTDSPEFLKTIQQTWDKVEDKYAVSALAVAGTVALWGSAGVISAIDRLPLIPGVLELVGIGYTGWFAYKNLVFKPDREALIRKIKGTVKDITGIDS*