AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1175740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175740 MtrunA17_Chr8g0345861 90.588 85 8 0 2 86 55 139 1.79e-52 162
Msa1175740 MtrunA17_Chr7g0276381 56.481 108 33 2 3 96 51 158 2.22e-31 108
Msa1175740 MtrunA17_Chr4g0004811 49.091 55 28 0 31 85 61 115 2.05e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1175740 AT2G46820.2 62.000 100 32 1 3 96 54 153 2.56e-27 99.0
Msa1175740 AT2G46820.1 62.000 100 32 1 3 96 54 153 2.56e-27 99.0
Msa1175740 AT1G52220.4 39.506 81 46 2 9 89 52 129 1.11e-11 57.8
Msa1175740 AT4G01150.1 33.750 80 53 0 7 86 54 133 1.48e-11 58.2

Find 45 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCCACCTATCAGCTTAAA+TGG 0.216366 8_1:+7260178 None:intergenic
CCTGGAGTTCTTGAGTTAAT+AGG 0.246781 8_1:-7260356 Msa1175740:CDS
CCCTGCAAATATCGCGTATT+TGG 0.254699 8_1:-7260275 Msa1175740:CDS
GGATGACCTTATAGAAGATA+TGG 0.334538 8_1:-7259948 Msa1175740:three_prime_UTR
ACCAAATACGCGATATTTGC+AGG 0.338699 8_1:+7260274 None:intergenic
TTACAAATTGATAAGATTAG+AGG 0.340323 8_1:-7259863 Msa1175740:three_prime_UTR
GATAGACTTCCTTTGATTCC+TGG 0.345188 8_1:-7260374 Msa1175740:CDS
GTTCTTGAGTTAATAGGAAT+TGG 0.346748 8_1:-7260350 Msa1175740:CDS
AAGAAAACCCTAGAAATTAC+TGG 0.372173 8_1:+7259779 None:intergenic
GTCATCCCATATCTTCTATA+AGG 0.393009 8_1:+7259942 None:intergenic
TCTAATCTTATCAATTTGTA+AGG 0.400180 8_1:+7259865 None:intergenic
TGGTGCATTGACATATAGAT+AGG 0.400882 8_1:-7259971 Msa1175740:three_prime_UTR
AATATCGGACTCTATCTATA+AGG 0.408677 8_1:+7259920 None:intergenic
GATATACATGGTTGATGGTC+AGG 0.413657 8_1:-7260033 Msa1175740:three_prime_UTR
AAAGATTGCTCGTGATGTTA+TGG 0.420998 8_1:-7260772 Msa1175740:CDS
TAGCTAGTGTATTTGCACTA+TGG 0.434144 8_1:-7260526 Msa1175740:CDS
CCGGGTCCATTTAAGCTGAT+AGG 0.438510 8_1:-7260184 Msa1175740:three_prime_UTR
TGCATCAAGTGAAATAATGT+TGG 0.448853 8_1:+7260058 None:intergenic
GATGTTATGGTAATGGCAAC+AGG 0.459632 8_1:-7260759 Msa1175740:CDS
TTTGCACTATGGAGCTCAGC+TGG 0.465802 8_1:-7260515 Msa1175740:CDS
GCATCAAGTGAAATAATGTT+GGG 0.472689 8_1:+7260059 None:intergenic
TCAGTTGATTCAACTTCTGT+TGG 0.480966 8_1:+7260729 None:intergenic
TGAAGATTCTTAACAAACTC+AGG 0.486308 8_1:+7260702 None:intergenic
GCATTGATATACATGGTTGA+TGG 0.499691 8_1:-7260011 Msa1175740:three_prime_UTR
TAAATATGCAGTGGGTTCAT+TGG 0.505381 8_1:-7260552 Msa1175740:CDS
CCTATTAACTCAAGAACTCC+AGG 0.507872 8_1:+7260356 None:intergenic
CCTATCAGCTTAAATGGACC+CGG 0.513699 8_1:+7260184 None:intergenic
GATGACCTTATAGAAGATAT+GGG 0.519246 8_1:-7259947 Msa1175740:three_prime_UTR
TTAATAGGAATTGGTTACAC+TGG 0.524822 8_1:-7260341 Msa1175740:CDS
GGTGCATTGACATATAGATA+GGG 0.536163 8_1:-7259970 Msa1175740:three_prime_UTR
TAATAGGAATTGGTTACACT+GGG 0.540472 8_1:-7260340 Msa1175740:CDS
TCAAGAACTCCAGGAATCAA+AGG 0.544788 8_1:+7260365 None:intergenic
CTTAGATTTAAATATATGAC+TGG 0.551593 8_1:-7260299 Msa1175740:CDS
ACTTGATGCATTGATATACA+TGG 0.554350 8_1:-7260045 Msa1175740:three_prime_UTR
TGCTCGTGATGTTATGGTAA+TGG 0.557462 8_1:-7260766 Msa1175740:CDS
TTTGATGATAAATATGCAGT+GGG 0.562064 8_1:-7260560 Msa1175740:CDS
ATTTGATGATAAATATGCAG+TGG 0.570116 8_1:-7260561 Msa1175740:CDS
GCATTGATATACATGGTTGA+TGG 0.575015 8_1:-7260038 Msa1175740:three_prime_UTR
TGGTCAAATACTATTGTGCT+TGG 0.604863 8_1:-7259991 Msa1175740:three_prime_UTR
TGGTCAGGCATTGATATACA+TGG 0.611000 8_1:-7260018 Msa1175740:three_prime_UTR
GTGCATTGACATATAGATAG+GGG 0.628973 8_1:-7259969 Msa1175740:three_prime_UTR
GGTCCATTTAAGCTGATAGG+TGG 0.648693 8_1:-7260181 Msa1175740:three_prime_UTR
CTATCAGCTTAAATGGACCC+GGG 0.651243 8_1:+7260185 None:intergenic
CCAAATACGCGATATTTGCA+GGG 0.651865 8_1:+7260275 None:intergenic
AATAGGAATTGGTTACACTG+GGG 0.760636 8_1:-7260339 Msa1175740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATAACATAATTCT+AGG + chr8_1:7260259-7260278 None:intergenic 10.0%
!!! AATTATGTTATTTATTTTGT+TGG - chr8_1:7260261-7260280 Msa1175740:exon 10.0%
!! TATTTCAAAAAAAAAATACA+AGG + chr8_1:7260620-7260639 None:intergenic 10.0%
!! ATAAAAATGTATTACAATAT+CGG + chr8_1:7260959-7260978 None:intergenic 10.0%
!! AAAATAAATAACATAATTCT+AGG + chr8_1:7260259-7260278 None:intergenic 10.0%
!!! AATTATGTTATTTATTTTGT+TGG - chr8_1:7260261-7260280 Msa1175740:exon 10.0%
!! TATTTCAAAAAAAAAATACA+AGG + chr8_1:7260620-7260639 None:intergenic 10.0%
!! ATAAAAATGTATTACAATAT+CGG + chr8_1:7260959-7260978 None:intergenic 10.0%
!! TCAATAATAAACATTAAGAA+GGG + chr8_1:7260236-7260255 None:intergenic 15.0%
!! TCAATAATAAACATTAAGAA+GGG + chr8_1:7260236-7260255 None:intergenic 15.0%
!! GTCAATAATAAACATTAAGA+AGG + chr8_1:7260237-7260256 None:intergenic 20.0%
!! CTTAGATTTAAATATATGAC+TGG - chr8_1:7260562-7260581 Msa1175740:CDS 20.0%
!!! TGTTTTTTTAAAATGATTCC+CGG - chr8_1:7260658-7260677 Msa1175740:intron 20.0%
!! TCTAATCTTATCAATTTGTA+AGG + chr8_1:7260999-7261018 None:intergenic 20.0%
!! TTACAAATTGATAAGATTAG+AGG - chr8_1:7260998-7261017 Msa1175740:intron 20.0%
!! GTCAATAATAAACATTAAGA+AGG + chr8_1:7260237-7260256 None:intergenic 20.0%
!! CTTAGATTTAAATATATGAC+TGG - chr8_1:7260562-7260581 Msa1175740:CDS 20.0%
!!! TGTTTTTTTAAAATGATTCC+CGG - chr8_1:7260658-7260677 Msa1175740:intron 20.0%
!! TCTAATCTTATCAATTTGTA+AGG + chr8_1:7260999-7261018 None:intergenic 20.0%
!! TTACAAATTGATAAGATTAG+AGG - chr8_1:7260998-7261017 Msa1175740:intron 20.0%
! AACTATTGATGAAGATTAGA+CGG - chr8_1:7259892-7259911 Msa1175740:three_prime_UTR 25.0%
! CAATATAGATGGATGTAATT+TGG + chr8_1:7260000-7260019 None:intergenic 25.0%
! TATATTGCTTACTTCTTCTA+GGG - chr8_1:7260013-7260032 Msa1175740:three_prime_UTR 25.0%
! ATAATACTAACTTTCTTCCT+AGG + chr8_1:7260049-7260068 None:intergenic 25.0%
! TAGGTTGTTAGAAATTGTAA+TGG - chr8_1:7260199-7260218 Msa1175740:three_prime_UTR 25.0%
!! ATTTGATGATAAATATGCAG+TGG - chr8_1:7260300-7260319 Msa1175740:CDS 25.0%
!! TTTGATGATAAATATGCAGT+GGG - chr8_1:7260301-7260320 Msa1175740:CDS 25.0%
!!! GTTTTTTTAAAATGATTCCC+GGG - chr8_1:7260659-7260678 Msa1175740:intron 25.0%
!!! AGTTTTTTCCAGTAATTTCT+AGG - chr8_1:7261074-7261093 Msa1175740:intron 25.0%
!!! GTTTTTTCCAGTAATTTCTA+GGG - chr8_1:7261075-7261094 Msa1175740:intron 25.0%
! AACTATTGATGAAGATTAGA+CGG - chr8_1:7259892-7259911 Msa1175740:three_prime_UTR 25.0%
! CAATATAGATGGATGTAATT+TGG + chr8_1:7260000-7260019 None:intergenic 25.0%
! TATATTGCTTACTTCTTCTA+GGG - chr8_1:7260013-7260032 Msa1175740:three_prime_UTR 25.0%
! ATAATACTAACTTTCTTCCT+AGG + chr8_1:7260049-7260068 None:intergenic 25.0%
! TAGGTTGTTAGAAATTGTAA+TGG - chr8_1:7260199-7260218 Msa1175740:three_prime_UTR 25.0%
!! ATTTGATGATAAATATGCAG+TGG - chr8_1:7260300-7260319 Msa1175740:CDS 25.0%
!! TTTGATGATAAATATGCAGT+GGG - chr8_1:7260301-7260320 Msa1175740:CDS 25.0%
!!! GTTTTTTTAAAATGATTCCC+GGG - chr8_1:7260659-7260678 Msa1175740:intron 25.0%
!!! AGTTTTTTCCAGTAATTTCT+AGG - chr8_1:7261074-7261093 Msa1175740:intron 25.0%
!!! GTTTTTTCCAGTAATTTCTA+GGG - chr8_1:7261075-7261094 Msa1175740:intron 25.0%
GAAGAAGTAAGCAATATAGA+TGG + chr8_1:7260011-7260030 None:intergenic 30.0%
CTATATTGCTTACTTCTTCT+AGG - chr8_1:7260012-7260031 Msa1175740:three_prime_UTR 30.0%
TGAAGATTCTTAACAAACTC+AGG + chr8_1:7260162-7260181 None:intergenic 30.0%
!! TTATTTTGTTGGCATCATAG+TGG - chr8_1:7260272-7260291 Msa1175740:CDS 30.0%
! TATTTTGTTGGCATCATAGT+GGG - chr8_1:7260273-7260292 Msa1175740:CDS 30.0%
CAATTACTTTCACTTGTAAC+AGG - chr8_1:7260459-7260478 Msa1175740:intron 30.0%
GTTCTTGAGTTAATAGGAAT+TGG - chr8_1:7260511-7260530 Msa1175740:CDS 30.0%
TTAATAGGAATTGGTTACAC+TGG - chr8_1:7260520-7260539 Msa1175740:CDS 30.0%
TAATAGGAATTGGTTACACT+GGG - chr8_1:7260521-7260540 Msa1175740:CDS 30.0%
GCATCAAGTGAAATAATGTT+GGG + chr8_1:7260805-7260824 None:intergenic 30.0%
TGCATCAAGTGAAATAATGT+TGG + chr8_1:7260806-7260825 None:intergenic 30.0%
! ACTTGATGCATTGATATACA+TGG - chr8_1:7260816-7260835 Msa1175740:intron 30.0%
GATGACCTTATAGAAGATAT+GGG - chr8_1:7260914-7260933 Msa1175740:intron 30.0%
AATATCGGACTCTATCTATA+AGG + chr8_1:7260944-7260963 None:intergenic 30.0%
AAGAAAACCCTAGAAATTAC+TGG + chr8_1:7261085-7261104 None:intergenic 30.0%
GAAGAAGTAAGCAATATAGA+TGG + chr8_1:7260011-7260030 None:intergenic 30.0%
CTATATTGCTTACTTCTTCT+AGG - chr8_1:7260012-7260031 Msa1175740:three_prime_UTR 30.0%
TGAAGATTCTTAACAAACTC+AGG + chr8_1:7260162-7260181 None:intergenic 30.0%
!! TTATTTTGTTGGCATCATAG+TGG - chr8_1:7260272-7260291 Msa1175740:CDS 30.0%
! TATTTTGTTGGCATCATAGT+GGG - chr8_1:7260273-7260292 Msa1175740:CDS 30.0%
CAATTACTTTCACTTGTAAC+AGG - chr8_1:7260459-7260478 Msa1175740:intron 30.0%
GTTCTTGAGTTAATAGGAAT+TGG - chr8_1:7260511-7260530 Msa1175740:CDS 30.0%
TTAATAGGAATTGGTTACAC+TGG - chr8_1:7260520-7260539 Msa1175740:CDS 30.0%
TAATAGGAATTGGTTACACT+GGG - chr8_1:7260521-7260540 Msa1175740:CDS 30.0%
GCATCAAGTGAAATAATGTT+GGG + chr8_1:7260805-7260824 None:intergenic 30.0%
TGCATCAAGTGAAATAATGT+TGG + chr8_1:7260806-7260825 None:intergenic 30.0%
! ACTTGATGCATTGATATACA+TGG - chr8_1:7260816-7260835 Msa1175740:intron 30.0%
GATGACCTTATAGAAGATAT+GGG - chr8_1:7260914-7260933 Msa1175740:intron 30.0%
AATATCGGACTCTATCTATA+AGG + chr8_1:7260944-7260963 None:intergenic 30.0%
AAGAAAACCCTAGAAATTAC+TGG + chr8_1:7261085-7261104 None:intergenic 30.0%
!! CATGATTCTGAGACAACAAA+GGG + chr8_1:7259808-7259827 None:intergenic 35.0%
TCAACTACACTTACAATGAG+TGG + chr8_1:7259840-7259859 None:intergenic 35.0%
!! GACGGTTCATATTTTAAGCT+CGG + chr8_1:7259958-7259977 None:intergenic 35.0%
! TGGATGTAATTTGGAATCGT+CGG + chr8_1:7259991-7260010 None:intergenic 35.0%
AAAGATTGCTCGTGATGTTA+TGG - chr8_1:7260089-7260108 Msa1175740:three_prime_UTR 35.0%
! TCAGTTGATTCAACTTCTGT+TGG + chr8_1:7260135-7260154 None:intergenic 35.0%
CAAGAAGCTGTATGATACAT+AGG - chr8_1:7260180-7260199 Msa1175740:three_prime_UTR 35.0%
! TAAATATGCAGTGGGTTCAT+TGG - chr8_1:7260309-7260328 Msa1175740:CDS 35.0%
TAGCTAGTGTATTTGCACTA+TGG - chr8_1:7260335-7260354 Msa1175740:CDS 35.0%
AATAGGAATTGGTTACACTG+GGG - chr8_1:7260522-7260541 Msa1175740:CDS 35.0%
! GCATTGATATACATGGTTGA+TGG - chr8_1:7260823-7260842 Msa1175740:intron 35.0%
! GCATTGATATACATGGTTGA+TGG - chr8_1:7260823-7260842 Msa1175740:intron 35.0%
TGGTCAAATACTATTGTGCT+TGG - chr8_1:7260870-7260889 Msa1175740:intron 35.0%
! TGGTGCATTGACATATAGAT+AGG - chr8_1:7260890-7260909 Msa1175740:intron 35.0%
! GGTGCATTGACATATAGATA+GGG - chr8_1:7260891-7260910 Msa1175740:intron 35.0%
! GTGCATTGACATATAGATAG+GGG - chr8_1:7260892-7260911 Msa1175740:intron 35.0%
GGATGACCTTATAGAAGATA+TGG - chr8_1:7260913-7260932 Msa1175740:intron 35.0%
GTCATCCCATATCTTCTATA+AGG + chr8_1:7260922-7260941 None:intergenic 35.0%
!! CATGATTCTGAGACAACAAA+GGG + chr8_1:7259808-7259827 None:intergenic 35.0%
TCAACTACACTTACAATGAG+TGG + chr8_1:7259840-7259859 None:intergenic 35.0%
!! GACGGTTCATATTTTAAGCT+CGG + chr8_1:7259958-7259977 None:intergenic 35.0%
! TGGATGTAATTTGGAATCGT+CGG + chr8_1:7259991-7260010 None:intergenic 35.0%
AAAGATTGCTCGTGATGTTA+TGG - chr8_1:7260089-7260108 Msa1175740:three_prime_UTR 35.0%
! TCAGTTGATTCAACTTCTGT+TGG + chr8_1:7260135-7260154 None:intergenic 35.0%
CAAGAAGCTGTATGATACAT+AGG - chr8_1:7260180-7260199 Msa1175740:three_prime_UTR 35.0%
! TAAATATGCAGTGGGTTCAT+TGG - chr8_1:7260309-7260328 Msa1175740:CDS 35.0%
TAGCTAGTGTATTTGCACTA+TGG - chr8_1:7260335-7260354 Msa1175740:CDS 35.0%
AATAGGAATTGGTTACACTG+GGG - chr8_1:7260522-7260541 Msa1175740:CDS 35.0%
! GCATTGATATACATGGTTGA+TGG - chr8_1:7260823-7260842 Msa1175740:intron 35.0%
! GCATTGATATACATGGTTGA+TGG - chr8_1:7260823-7260842 Msa1175740:intron 35.0%
TGGTCAAATACTATTGTGCT+TGG - chr8_1:7260870-7260889 Msa1175740:intron 35.0%
! TGGTGCATTGACATATAGAT+AGG - chr8_1:7260890-7260909 Msa1175740:intron 35.0%
! GGTGCATTGACATATAGATA+GGG - chr8_1:7260891-7260910 Msa1175740:intron 35.0%
! GTGCATTGACATATAGATAG+GGG - chr8_1:7260892-7260911 Msa1175740:intron 35.0%
GGATGACCTTATAGAAGATA+TGG - chr8_1:7260913-7260932 Msa1175740:intron 35.0%
GTCATCCCATATCTTCTATA+AGG + chr8_1:7260922-7260941 None:intergenic 35.0%
!! GCATGATTCTGAGACAACAA+AGG + chr8_1:7259809-7259828 None:intergenic 40.0%
ATCGTCGGATGAAGATTAGA+CGG + chr8_1:7259976-7259995 None:intergenic 40.0%
! TCTAGGGCTTGATATTACCT+AGG - chr8_1:7260029-7260048 Msa1175740:three_prime_UTR 40.0%
TGCTCGTGATGTTATGGTAA+TGG - chr8_1:7260095-7260114 Msa1175740:three_prime_UTR 40.0%
!! GATGTTATGGTAATGGCAAC+AGG - chr8_1:7260102-7260121 Msa1175740:three_prime_UTR 40.0%
GATAGACTTCCTTTGATTCC+TGG - chr8_1:7260487-7260506 Msa1175740:intron 40.0%
TCAAGAACTCCAGGAATCAA+AGG + chr8_1:7260499-7260518 None:intergenic 40.0%
CCTATTAACTCAAGAACTCC+AGG + chr8_1:7260508-7260527 None:intergenic 40.0%
CCTGGAGTTCTTGAGTTAAT+AGG - chr8_1:7260505-7260524 Msa1175740:CDS 40.0%
CCAAATACGCGATATTTGCA+GGG + chr8_1:7260589-7260608 None:intergenic 40.0%
ACCAAATACGCGATATTTGC+AGG + chr8_1:7260590-7260609 None:intergenic 40.0%
!! GATATACATGGTTGATGGTC+AGG - chr8_1:7260828-7260847 Msa1175740:intron 40.0%
!! TGGTCAGGCATTGATATACA+TGG - chr8_1:7260843-7260862 Msa1175740:intron 40.0%
!! GCATGATTCTGAGACAACAA+AGG + chr8_1:7259809-7259828 None:intergenic 40.0%
ATCGTCGGATGAAGATTAGA+CGG + chr8_1:7259976-7259995 None:intergenic 40.0%
! TCTAGGGCTTGATATTACCT+AGG - chr8_1:7260029-7260048 Msa1175740:three_prime_UTR 40.0%
TGCTCGTGATGTTATGGTAA+TGG - chr8_1:7260095-7260114 Msa1175740:three_prime_UTR 40.0%
!! GATGTTATGGTAATGGCAAC+AGG - chr8_1:7260102-7260121 Msa1175740:three_prime_UTR 40.0%
GATAGACTTCCTTTGATTCC+TGG - chr8_1:7260487-7260506 Msa1175740:intron 40.0%
TCAAGAACTCCAGGAATCAA+AGG + chr8_1:7260499-7260518 None:intergenic 40.0%
CCTATTAACTCAAGAACTCC+AGG + chr8_1:7260508-7260527 None:intergenic 40.0%
CCTGGAGTTCTTGAGTTAAT+AGG - chr8_1:7260505-7260524 Msa1175740:CDS 40.0%
CCAAATACGCGATATTTGCA+GGG + chr8_1:7260589-7260608 None:intergenic 40.0%
ACCAAATACGCGATATTTGC+AGG + chr8_1:7260590-7260609 None:intergenic 40.0%
!! GATATACATGGTTGATGGTC+AGG - chr8_1:7260828-7260847 Msa1175740:intron 40.0%
!! TGGTCAGGCATTGATATACA+TGG - chr8_1:7260843-7260862 Msa1175740:intron 40.0%
TGAGACAACAAAGGGAGTGA+TGG + chr8_1:7259800-7259819 None:intergenic 45.0%
!!! GAGCTCAGCTGGTTTTATCT+CGG - chr8_1:7260357-7260376 Msa1175740:CDS 45.0%
CCCTGCAAATATCGCGTATT+TGG - chr8_1:7260586-7260605 Msa1175740:intron 45.0%
CTATCAGCTTAAATGGACCC+GGG + chr8_1:7260679-7260698 None:intergenic 45.0%
CCTATCAGCTTAAATGGACC+CGG + chr8_1:7260680-7260699 None:intergenic 45.0%
GGTCCATTTAAGCTGATAGG+TGG - chr8_1:7260680-7260699 Msa1175740:intron 45.0%
CTGCCACCTATCAGCTTAAA+TGG + chr8_1:7260686-7260705 None:intergenic 45.0%
TGAGACAACAAAGGGAGTGA+TGG + chr8_1:7259800-7259819 None:intergenic 45.0%
!!! GAGCTCAGCTGGTTTTATCT+CGG - chr8_1:7260357-7260376 Msa1175740:CDS 45.0%
CCCTGCAAATATCGCGTATT+TGG - chr8_1:7260586-7260605 Msa1175740:intron 45.0%
CTATCAGCTTAAATGGACCC+GGG + chr8_1:7260679-7260698 None:intergenic 45.0%
CCTATCAGCTTAAATGGACC+CGG + chr8_1:7260680-7260699 None:intergenic 45.0%
GGTCCATTTAAGCTGATAGG+TGG - chr8_1:7260680-7260699 Msa1175740:intron 45.0%
CTGCCACCTATCAGCTTAAA+TGG + chr8_1:7260686-7260705 None:intergenic 45.0%
! GGAGTGATGGAAGTGTGGAA+AGG + chr8_1:7259787-7259806 None:intergenic 50.0%
! CAAAGGGAGTGATGGAAGTG+TGG + chr8_1:7259792-7259811 None:intergenic 50.0%
TTTGCACTATGGAGCTCAGC+TGG - chr8_1:7260346-7260365 Msa1175740:CDS 50.0%
CCGGGTCCATTTAAGCTGAT+AGG - chr8_1:7260677-7260696 Msa1175740:intron 50.0%
! GGAGTGATGGAAGTGTGGAA+AGG + chr8_1:7259787-7259806 None:intergenic 50.0%
! CAAAGGGAGTGATGGAAGTG+TGG + chr8_1:7259792-7259811 None:intergenic 50.0%
TTTGCACTATGGAGCTCAGC+TGG - chr8_1:7260346-7260365 Msa1175740:CDS 50.0%
CCGGGTCCATTTAAGCTGAT+AGG - chr8_1:7260677-7260696 Msa1175740:intron 50.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 7259775 7261108 7259775 ID=Msa1175740;Name=Msa1175740
chr8_1 mRNA 7259775 7261108 7259775 ID=Msa1175740-mRNA-1;Parent=Msa1175740;Name=Msa1175740-mRNA-1;_AED=0.15;_eAED=0.16;_QI=0|0.66|0.75|1|0.66|0.75|4|493|109
chr8_1 exon 7259775 7260402 7259775 ID=Msa1175740-mRNA-1:exon:2599;Parent=Msa1175740-mRNA-1
chr8_1 exon 7260505 7260591 7260505 ID=Msa1175740-mRNA-1:exon:2598;Parent=Msa1175740-mRNA-1
chr8_1 exon 7260695 7260798 7260695 ID=Msa1175740-mRNA-1:exon:2597;Parent=Msa1175740-mRNA-1
chr8_1 exon 7261105 7261108 7261105 ID=Msa1175740-mRNA-1:exon:2596;Parent=Msa1175740-mRNA-1
chr8_1 CDS 7261105 7261108 7261105 ID=Msa1175740-mRNA-1:cds;Parent=Msa1175740-mRNA-1
chr8_1 CDS 7260695 7260798 7260695 ID=Msa1175740-mRNA-1:cds;Parent=Msa1175740-mRNA-1
chr8_1 CDS 7260505 7260591 7260505 ID=Msa1175740-mRNA-1:cds;Parent=Msa1175740-mRNA-1
chr8_1 CDS 7260268 7260402 7260268 ID=Msa1175740-mRNA-1:cds;Parent=Msa1175740-mRNA-1
chr8_1 three_prime_UTR 7259775 7260267 7259775 ID=Msa1175740-mRNA-1:three_prime_utr;Parent=Msa1175740-mRNA-1
Gene Sequence

>Msa1175740

ATGTATCGAAAGATTGCTCGTGATGTTATGGTAATGGCAACAGGAGATGCACCAACAGAAGTTGAATCAACTGAACTACCTGAGTTTGTTAAGAATCTTCAAGAAGCTTGGGACAAATTTGATGATAAATATGCAGTGGGTTCATTGGTTGTAGCTAGTGTATTTGCACTATGGAGCTCAGCTGGTTTTATCTCGGCAATTGATAGACTTCCTTTGATTCCTGGAGTTCTTGAGTTAATAGGAATTGGTTACACTGGGGTAAGTCAAATAAATACACTTAGATTTAAATATATGACTGGTCCCTGCAAATATCGCGTATTTGGTTTTTAG

Protein sequence

>Msa1175740

MYRKIARDVMVMATGDAPTEVESTELPEFVKNLQEAWDKFDDKYAVGSLVVASVFALWSSAGFISAIDRLPLIPGVLELIGIGYTGVSQINTLRFKYMTGPCKYRVFGF*