Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581200 | KAF7818222.1 | 63.433 | 402 | 88 | 5 | 1 | 402 | 2 | 344 | 8.43e-167 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581200 | sp|Q9LHH7|FOLD2_ARATH | 75.000 | 144 | 36 | 0 | 2 | 145 | 9 | 152 | 2.20e-73 | 234 |
| Msa0581200 | sp|Q9LHH7|FOLD2_ARATH | 82.836 | 134 | 23 | 0 | 263 | 396 | 162 | 295 | 7.25e-70 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581200 | A0A834TC64 | 63.433 | 402 | 88 | 5 | 1 | 402 | 2 | 344 | 4.03e-167 | 481 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046020 | Msa0581200 | 0.808031 | 3.782283e-50 | -8.615850e-47 |
| Msa0069230 | Msa0581200 | 0.801784 | 7.645287e-49 | -8.615850e-47 |
| Msa0081400 | Msa0581200 | 0.800044 | 1.733539e-48 | -8.615850e-47 |
| Msa0082340 | Msa0581200 | 0.807016 | 6.211292e-50 | -8.615850e-47 |
| Msa0124460 | Msa0581200 | 0.806154 | 9.439461e-50 | -8.615850e-47 |
| Msa0141770 | Msa0581200 | 0.802753 | 4.830820e-49 | -8.615850e-47 |
| Msa0172820 | Msa0581200 | 0.836354 | 9.829705e-57 | -8.615850e-47 |
| Msa0185770 | Msa0581200 | 0.800406 | 1.462668e-48 | -8.615850e-47 |
| Msa0195850 | Msa0581200 | 0.806820 | 6.832770e-50 | -8.615850e-47 |
| Msa0198280 | Msa0581200 | 0.805277 | 1.442801e-49 | -8.615850e-47 |
| Msa0212290 | Msa0581200 | 0.818446 | 1.951575e-52 | -8.615850e-47 |
| Msa0388790 | Msa0581200 | 0.811504 | 6.774819e-51 | -8.615850e-47 |
| Msa0429490 | Msa0581200 | 0.805637 | 1.212497e-49 | -8.615850e-47 |
| Msa0437820 | Msa0581200 | 0.802221 | 6.216797e-49 | -8.615850e-47 |
| Msa0450920 | Msa0581200 | 0.809747 | 1.624227e-50 | -8.615850e-47 |
| Msa0474290 | Msa0581200 | 0.816633 | 5.000890e-52 | -8.615850e-47 |
| Msa0275260 | Msa0581200 | 0.812514 | 4.079727e-51 | -8.615850e-47 |
| Msa0315720 | Msa0581200 | 0.808848 | 2.531355e-50 | -8.615850e-47 |
| Msa0315760 | Msa0581200 | 0.815311 | 9.865897e-52 | -8.615850e-47 |
| Msa0327990 | Msa0581200 | 0.811703 | 6.131690e-51 | -8.615850e-47 |
| Msa0358750 | Msa0581200 | 0.819783 | 9.686429e-53 | -8.615850e-47 |
| Msa0498250 | Msa0581200 | 0.824239 | 8.988412e-54 | -8.615850e-47 |
| Msa0518720 | Msa0581200 | 0.818963 | 1.489696e-52 | -8.615850e-47 |
| Msa0573940 | Msa0581200 | 0.809180 | 2.149337e-50 | -8.615850e-47 |
| Msa0576550 | Msa0581200 | 0.804519 | 2.077466e-49 | -8.615850e-47 |
| Msa0578400 | Msa0581200 | 0.810579 | 1.074812e-50 | -8.615850e-47 |
| Msa0581200 | Msa0623350 | 0.810514 | 1.110073e-50 | -8.615850e-47 |
| Msa0581200 | Msa0623470 | 0.806758 | 7.041049e-50 | -8.615850e-47 |
| Msa0581200 | Msa0628440 | 0.813616 | 2.338508e-51 | -8.615850e-47 |
| Msa0581200 | Msa0703620 | 0.801546 | 8.554869e-49 | -8.615850e-47 |
| Msa0581200 | Msa0752490 | 0.804995 | 1.652910e-49 | -8.615850e-47 |
| Msa0581200 | Msa0793130 | 0.813721 | 2.217835e-51 | -8.615850e-47 |
| Msa0581200 | Msa0797180 | 0.805751 | 1.147490e-49 | -8.615850e-47 |
| Msa0581200 | Msa0866320 | 0.807463 | 4.992374e-50 | -8.615850e-47 |
| Msa0581200 | Msa0906180 | 0.818007 | 2.453115e-52 | -8.615850e-47 |
| Msa0581200 | Msa0930850 | 0.807388 | 5.180175e-50 | -8.615850e-47 |
| Msa0581200 | Msa1083620 | 0.811885 | 5.597901e-51 | -8.615850e-47 |
| Msa0581200 | Msa1130850 | 0.802866 | 4.577357e-49 | -8.615850e-47 |
| Msa0581200 | Msa1130910 | 0.803777 | 2.965043e-49 | -8.615850e-47 |
| Msa0581200 | Msa1163130 | 0.803036 | 4.221599e-49 | -8.615850e-47 |
| Msa0581200 | Msa1166030 | 0.990503 | 6.071569e-183 | -8.615850e-47 |
| Msa0581200 | Msa1206510 | 0.813002 | 3.191034e-51 | -8.615850e-47 |
| Msa0581200 | Msa1223520 | 0.800056 | 1.723351e-48 | -8.615850e-47 |
| Msa0581200 | Msa1225280 | 0.816178 | 6.322037e-52 | -8.615850e-47 |
| Msa0581200 | Msa1244380 | 0.800939 | 1.139167e-48 | -8.615850e-47 |
| Msa0581200 | Msa1263600 | 0.809116 | 2.218537e-50 | -8.615850e-47 |
| Msa0581200 | Msa1277270 | 0.801850 | 7.412198e-49 | -8.615850e-47 |
| Msa0581200 | Msa1298170 | 0.801410 | 9.124906e-49 | -8.615850e-47 |
| Msa0581200 | Msa1373420 | 0.812020 | 5.230330e-51 | -8.615850e-47 |
| Msa0581200 | Msa1396320 | 0.990837 | 1.433245e-184 | -8.615850e-47 |
| Msa0581200 | Msa1401640 | 0.800201 | 1.610825e-48 | -8.615850e-47 |
| Msa0581200 | Msa1411930 | 0.811051 | 8.494567e-51 | -8.615850e-47 |
| Msa0581200 | Msa1414280 | 0.802156 | 6.413082e-49 | -8.615850e-47 |
| Msa0581200 | Msa1424250 | 0.812708 | 3.701238e-51 | -8.615850e-47 |
| Msa0581200 | Msa1452230 | 0.801084 | 1.064109e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581200 | MtrunA17_Chr7g0269111 | 97.931 | 145 | 3 | 0 | 1 | 145 | 1 | 145 | 9.59e-98 | 293 |
| Msa0581200 | MtrunA17_Chr7g0269111 | 99.281 | 139 | 1 | 0 | 263 | 401 | 155 | 293 | 7.35e-91 | 276 |
| Msa0581200 | MtrunA17_Chr7g0247061 | 70.213 | 141 | 41 | 1 | 257 | 396 | 206 | 346 | 9.99e-62 | 202 |
| Msa0581200 | MtrunA17_Chr7g0247061 | 61.268 | 142 | 55 | 0 | 4 | 145 | 62 | 203 | 3.46e-57 | 191 |
| Msa0581200 | MtrunA17_Chr1g0160161 | 56.250 | 144 | 63 | 0 | 2 | 145 | 70 | 213 | 3.89e-52 | 178 |
| Msa0581200 | MtrunA17_Chr1g0160161 | 65.248 | 141 | 48 | 1 | 257 | 396 | 216 | 356 | 6.73e-52 | 177 |
| Msa0581200 | MtrunA17_Chr3g0078501 | 46.203 | 158 | 85 | 0 | 2 | 159 | 73 | 230 | 9.64e-44 | 153 |
| Msa0581200 | MtrunA17_Chr2g0295201 | 74.667 | 75 | 16 | 2 | 164 | 238 | 4 | 75 | 3.12e-28 | 106 |
| Msa0581200 | MtrunA17_Chr3g0078511 | 62.712 | 59 | 21 | 1 | 339 | 397 | 1 | 58 | 1.31e-17 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581200 | AT3G12290.1 | 75.000 | 144 | 36 | 0 | 2 | 145 | 9 | 152 | 2.24e-74 | 234 |
| Msa0581200 | AT3G12290.1 | 82.836 | 134 | 23 | 0 | 263 | 396 | 162 | 295 | 7.37e-71 | 225 |
| Msa0581200 | AT4G00620.1 | 69.173 | 133 | 41 | 0 | 264 | 396 | 223 | 355 | 1.88e-58 | 195 |
| Msa0581200 | AT4G00620.1 | 62.500 | 144 | 54 | 0 | 2 | 145 | 69 | 212 | 2.87e-58 | 194 |
| Msa0581200 | AT2G38660.1 | 65.942 | 138 | 47 | 0 | 259 | 396 | 212 | 349 | 8.87e-53 | 179 |
| Msa0581200 | AT2G38660.1 | 56.338 | 142 | 62 | 0 | 4 | 145 | 65 | 206 | 1.15e-50 | 174 |
| Msa0581200 | AT2G38660.3 | 65.942 | 138 | 47 | 0 | 259 | 396 | 212 | 349 | 8.87e-53 | 179 |
| Msa0581200 | AT2G38660.3 | 56.338 | 142 | 62 | 0 | 4 | 145 | 65 | 206 | 1.15e-50 | 174 |
| Msa0581200 | AT4G00600.1 | 63.158 | 133 | 49 | 0 | 264 | 396 | 173 | 305 | 2.76e-52 | 177 |
| Msa0581200 | AT4G00600.1 | 46.528 | 144 | 41 | 1 | 2 | 145 | 55 | 162 | 6.99e-33 | 125 |
| Msa0581200 | AT2G38660.2 | 55.556 | 144 | 64 | 0 | 2 | 145 | 63 | 206 | 5.42e-52 | 174 |
| Msa0581200 | AT2G38660.4 | 56.338 | 142 | 62 | 0 | 4 | 145 | 65 | 206 | 1.17e-50 | 174 |
| Msa0581200 | AT2G38660.4 | 62.264 | 106 | 40 | 0 | 259 | 364 | 212 | 317 | 5.14e-35 | 132 |
| Msa0581200 | AT2G38660.7 | 48.515 | 101 | 52 | 0 | 2 | 102 | 63 | 163 | 2.10e-25 | 102 |
| Msa0581200 | AT2G38660.6 | 48.515 | 101 | 52 | 0 | 2 | 102 | 63 | 163 | 2.10e-25 | 102 |
| Msa0581200 | AT2G38660.5 | 48.515 | 101 | 52 | 0 | 2 | 102 | 63 | 163 | 2.10e-25 | 102 |
| Msa0581200 | AT2G38660.8 | 48.515 | 101 | 52 | 0 | 2 | 102 | 63 | 163 | 2.10e-25 | 102 |
| Msa0581200 | AT1G31175.1 | 61.404 | 57 | 20 | 1 | 183 | 239 | 47 | 101 | 1.99e-16 | 75.5 |
| Msa0581200 | AT1G31175.2 | 61.404 | 57 | 20 | 1 | 183 | 239 | 47 | 101 | 1.99e-16 | 75.5 |
Find 127 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTATGTGCTATACTTTAT+TGG | 0.095499 | 4_1:-86518647 | Msa0581200:three_prime_UTR |
| TAACTAGCGCATGGACATTT+TGG | 0.171159 | 4_1:+86518225 | None:intergenic |
| CGAAAAGTTAGTATATTTAT+AGG | 0.211223 | 4_1:-86522868 | None:intergenic |
| TTTCTCTTCATTTATATGTT+TGG | 0.237367 | 4_1:+86522198 | None:intergenic |
| TTCTCTTCATTTATATGTTT+GGG | 0.275577 | 4_1:+86522199 | None:intergenic |
| GAGAAAAGCTTGCGCTGATT+TGG | 0.292482 | 4_1:-86522430 | Msa0581200:CDS |
| GGTTGGATTACTCCTGTTCC+TGG | 0.334532 | 4_1:-86518932 | Msa0581200:CDS |
| CTTTATTGGAATATTGCTTT+TGG | 0.335457 | 4_1:-86518633 | Msa0581200:three_prime_UTR |
| ACGAAGTGGTGTAAGTATAA+AGG | 0.338275 | 4_1:-86519764 | Msa0581200:intron |
| CACGGCTTTGCCGTCAATTA+CGG | 0.340063 | 4_1:+86522676 | None:intergenic |
| AGAAAAGCTTGCGCTGATTT+GGG | 0.341343 | 4_1:-86522429 | Msa0581200:CDS |
| AGCAACATTGTGACTGTCAT+TGG | 0.347400 | 4_1:+86518899 | None:intergenic |
| CAACTAGGAAGGCAGGTTAT+AGG | 0.352622 | 4_1:-86518997 | Msa0581200:CDS |
| GAGGAAGCATCTAAAGTTGC+TGG | 0.352957 | 4_1:-86518953 | Msa0581200:CDS |
| CATCATCATCTTCAGGTTGC+TGG | 0.354269 | 4_1:-86522510 | Msa0581200:intron |
| GAAAAGTTAGTATATTTATA+GGG | 0.359636 | 4_1:-86522867 | None:intergenic |
| CGAAGTGGTGTAAGTATAAA+GGG | 0.365346 | 4_1:-86519763 | Msa0581200:intron |
| TTCAAAAGCAGTAATGAAAC+TGG | 0.393159 | 4_1:+86519697 | None:intergenic |
| AGCATTTACTTTGGGAGTGC+AGG | 0.399690 | 4_1:+86522078 | None:intergenic |
| TCAGCTTCGGAAATTTGTTC+AGG | 0.400499 | 4_1:+86522381 | None:intergenic |
| GCTTCACGTATGATGTCTTC+TGG | 0.403074 | 4_1:+86519631 | None:intergenic |
| TTATATGTGTGCAGGTATAT+TGG | 0.405081 | 4_1:-86522236 | Msa0581200:intron |
| GAGAGGGTCTCTGCCTTTCA+TGG | 0.418461 | 4_1:+86522108 | None:intergenic |
| ACGTATTCTATAAAATTGTA+AGG | 0.419672 | 4_1:-86518740 | Msa0581200:three_prime_UTR |
| AAGGCAGGTTATAGGCTTGT+TGG | 0.427901 | 4_1:-86518989 | Msa0581200:CDS |
| TATAACCTGCCTTCCTAGTT+GGG | 0.428149 | 4_1:+86518999 | None:intergenic |
| TACAGAGGGGAAGAAGAAAT+AGG | 0.431509 | 4_1:+86518539 | None:intergenic |
| CTATAACCTGCCTTCCTAGT+TGG | 0.431628 | 4_1:+86518998 | None:intergenic |
| ATGCTTGATTACTTCAGCTT+CGG | 0.434782 | 4_1:+86522368 | None:intergenic |
| CGCAACCTTCTCCGATCAAA+TGG | 0.435703 | 4_1:-86522702 | Msa0581200:exon |
| TTTAAGAGCGGTACCGGCGC+TGG | 0.440056 | 4_1:+86520389 | None:intergenic |
| TTTCTTAGATCAAGGGAAGT+TGG | 0.440672 | 4_1:-86519072 | Msa0581200:intron |
| GTGCCACCGTCGCCAGGTCT+CGG | 0.442318 | 4_1:-86520510 | Msa0581200:CDS |
| GTGTAAGTATAAAGGGGAAA+AGG | 0.444068 | 4_1:-86519756 | Msa0581200:CDS |
| CGTACCGCCTCAGATTGTTC+AGG | 0.451345 | 4_1:+86520423 | None:intergenic |
| TGCAAGATGAATTAGTGGTT+GGG | 0.451444 | 4_1:-86520639 | Msa0581200:intron |
| AATGTTGCTGAAGAATACTT+TGG | 0.453034 | 4_1:-86518885 | Msa0581200:CDS |
| CCGGCGTTTAAGAGCGGTAC+CGG | 0.460537 | 4_1:+86520383 | None:intergenic |
| GGACCTACACCTCCAGGAAC+AGG | 0.460733 | 4_1:+86518920 | None:intergenic |
| GGACTTGCAGTGGTGATAGT+AGG | 0.466821 | 4_1:-86522489 | Msa0581200:CDS |
| TGTGACTGTGTTGACATTGC+CGG | 0.471891 | 4_1:+86520364 | None:intergenic |
| AATTACGGTGGCCATTTGAT+CGG | 0.474921 | 4_1:+86522691 | None:intergenic |
| AGCCTTGAGAAGGATGTTGA+TGG | 0.475914 | 4_1:-86522160 | Msa0581200:CDS |
| CGTATCCTCTCTGAGAAATA+CGG | 0.476330 | 4_1:-86522617 | Msa0581200:CDS |
| AGTGACTCACCATGTACATT+GGG | 0.481285 | 4_1:+86522324 | None:intergenic |
| AGAAGAAATAGGTTATATAC+AGG | 0.485771 | 4_1:+86518550 | None:intergenic |
| GATATTGTTATTGCAGCAGC+AGG | 0.488835 | 4_1:-86519607 | Msa0581200:CDS |
| ACATCTATTACTGCAGCTCC+AGG | 0.491120 | 4_1:+86519043 | None:intergenic |
| GAGAAGAGGATGAAGAAGAA+AGG | 0.493375 | 4_1:-86520584 | Msa0581200:CDS |
| CGCCTCAGATTGTTCAGGAC+AGG | 0.496047 | 4_1:+86520428 | None:intergenic |
| ACTCCTGTTCCTGGAGGTGT+AGG | 0.496506 | 4_1:-86518923 | Msa0581200:CDS |
| TGTTATTGCAGCAGCAGGAC+AGG | 0.498986 | 4_1:-86519602 | Msa0581200:CDS |
| CGTATTTCTCAGAGAGGATA+CGG | 0.500459 | 4_1:+86522618 | None:intergenic |
| GATAGAGTGCCACCGTCGCC+AGG | 0.501130 | 4_1:-86520516 | Msa0581200:CDS |
| GTCACGTGGCGCAAATTAAG+TGG | 0.508820 | 4_1:-86518169 | Msa0581200:three_prime_UTR |
| ATCGGCAAGCTTGCCATGAA+AGG | 0.510148 | 4_1:-86522121 | Msa0581200:CDS |
| ACAACATCAAAATCATATTC+CGG | 0.510826 | 4_1:-86520296 | Msa0581200:intron |
| CGAAGGCATGGTTGAGGTGA+CGG | 0.512330 | 4_1:+86520472 | None:intergenic |
| CGCAACCTCTGCTCCAGCGC+CGG | 0.513215 | 4_1:-86520402 | Msa0581200:CDS |
| GGCTTTCATCCTTTGAACAT+CGG | 0.514273 | 4_1:-86522139 | Msa0581200:CDS |
| TCATTTATATGTTTGGGCAG+TGG | 0.514441 | 4_1:+86522205 | None:intergenic |
| TGTAAGTATAAAGGGGAAAA+GGG | 0.521694 | 4_1:-86519755 | Msa0581200:CDS |
| GACTGAAATCAGCCTTGAGA+AGG | 0.525446 | 4_1:-86522170 | Msa0581200:CDS |
| GACTTGCAGTGGTGATAGTA+GGG | 0.525562 | 4_1:-86522488 | Msa0581200:CDS |
| GGCATGGTTGAGGTGACGGC+AGG | 0.535971 | 4_1:+86520476 | None:intergenic |
| GGGAAAAGGGCAGTTGTGGT+TGG | 0.536435 | 4_1:-86519742 | Msa0581200:CDS |
| TTGGTAGAAGCAACATAGTC+GGG | 0.537576 | 4_1:-86519723 | Msa0581200:CDS |
| GCATTTACTTTGGGAGTGCA+GGG | 0.540237 | 4_1:+86522079 | None:intergenic |
| AGCAGCAGGACAGGCAAAGA+TGG | 0.543320 | 4_1:-86519593 | Msa0581200:intron |
| GGTGGCCATTTGATCGGAGA+AGG | 0.543368 | 4_1:+86522697 | None:intergenic |
| ATGGTTGAGGTGACGGCAGG+CGG | 0.544059 | 4_1:+86520479 | None:intergenic |
| GCAAGCTTGCCGATGTTCAA+AGG | 0.547348 | 4_1:+86522130 | None:intergenic |
| CTTCGGAAATTTGTTCAGGA+AGG | 0.547633 | 4_1:+86522385 | None:intergenic |
| AGATCGGATTGTTTGTGCCA+CGG | 0.550515 | 4_1:+86522658 | None:intergenic |
| GATGACCCAACTAGGAAGGC+AGG | 0.556133 | 4_1:-86519004 | Msa0581200:CDS |
| AAGCATCTAAAGTTGCTGGT+TGG | 0.557994 | 4_1:-86518949 | Msa0581200:CDS |
| CAAGGCACACGGCGAAGGCA+TGG | 0.559191 | 4_1:+86520460 | None:intergenic |
| ATTCTGTTGATGACCCAACT+AGG | 0.559417 | 4_1:-86519012 | Msa0581200:CDS |
| GTCATTGGACCTACACCTCC+AGG | 0.563478 | 4_1:+86518914 | None:intergenic |
| AAGTGACTCACCATGTACAT+TGG | 0.565737 | 4_1:+86522323 | None:intergenic |
| CCGGTACCGCTCTTAAACGC+CGG | 0.567237 | 4_1:-86520383 | Msa0581200:CDS |
| AAAGGGGAAAAGGGCAGTTG+TGG | 0.567603 | 4_1:-86519746 | Msa0581200:CDS |
| CGGTACCGGCGCTGGAGCAG+AGG | 0.568447 | 4_1:+86520397 | None:intergenic |
| TCAGGTTGCTGGACTTGCAG+TGG | 0.572590 | 4_1:-86522499 | Msa0581200:intron |
| CAAATGGCCACCGTAATTGA+CGG | 0.574064 | 4_1:-86522686 | Msa0581200:CDS |
| GTTGGTAGAAGCAACATAGT+CGG | 0.574369 | 4_1:-86519724 | Msa0581200:CDS |
| AGCCATCAACATCCTTCTCA+AGG | 0.583414 | 4_1:+86522158 | None:intergenic |
| CCTCGTCGGCGATTTCAGAT+CGG | 0.583482 | 4_1:+86522642 | None:intergenic |
| AAGGGAAGTTGGATAAAACC+TGG | 0.587815 | 4_1:-86519061 | Msa0581200:CDS |
| TGCGCTAGTTAACTAGCGCA+TGG | 0.589831 | 4_1:+86518216 | None:intergenic |
| CGGTTGCAGAAGAAGAGAAG+AGG | 0.592925 | 4_1:-86520598 | Msa0581200:CDS |
| ACACGGCGAAGGCATGGTTG+AGG | 0.597922 | 4_1:+86520466 | None:intergenic |
| GGCAAGTGAGACAAGGCACA+CGG | 0.597948 | 4_1:+86520449 | None:intergenic |
| TGTTGATGACCCAACTAGGA+AGG | 0.598349 | 4_1:-86519008 | Msa0581200:CDS |
| GGAGTGCAGGGAACAAAGAG+AGG | 0.599700 | 4_1:+86522091 | None:intergenic |
| TGCCTGTCCTGAACAATCTG+AGG | 0.600852 | 4_1:-86520430 | Msa0581200:CDS |
| CGTATTCTATAAAATTGTAA+GGG | 0.603359 | 4_1:-86518739 | Msa0581200:three_prime_UTR |
| ACATTGCCGGCGTTTAAGAG+CGG | 0.603747 | 4_1:+86520377 | None:intergenic |
| GCGGAGTTACGACCGAGACC+TGG | 0.607008 | 4_1:+86520498 | None:intergenic |
| TTCTATAAAATTGTAAGGGT+AGG | 0.607410 | 4_1:-86518735 | Msa0581200:three_prime_UTR |
| TAGCACATACAGAGAACAAG+AGG | 0.609611 | 4_1:+86518658 | None:intergenic |
| GGCGCAAATTAAGTGGCGCA+AGG | 0.612096 | 4_1:-86518162 | Msa0581200:three_prime_UTR |
| GGCTTTGCCGTCAATTACGG+TGG | 0.613849 | 4_1:+86522679 | None:intergenic |
| TGAGACAAGGCACACGGCGA+AGG | 0.616218 | 4_1:+86520455 | None:intergenic |
| AACGCTGATCCCAATGTACA+TGG | 0.616668 | 4_1:-86522333 | Msa0581200:intron |
| CGACCGAGACCTGGCGACGG+TGG | 0.617044 | 4_1:+86520507 | None:intergenic |
| CAGGACAGGCAAGTGAGACA+AGG | 0.621763 | 4_1:+86520442 | None:intergenic |
| TTTGTGAGAGTTAAATTGGG+TGG | 0.624251 | 4_1:-86522795 | Msa0581200:five_prime_UTR |
| CGTAATTGACGGCAAAGCCG+TGG | 0.631640 | 4_1:-86522675 | Msa0581200:CDS |
| TTAGTGTTGTGACTGTGTCG+TGG | 0.633565 | 4_1:+86520331 | None:intergenic |
| CCGATCTGAAATCGCCGACG+AGG | 0.637149 | 4_1:-86522642 | Msa0581200:CDS |
| TGGATTACTCCTGTTCCTGG+AGG | 0.641207 | 4_1:-86518929 | Msa0581200:CDS |
| CCTTGCCGTATTTCTCAGAG+AGG | 0.642605 | 4_1:+86522612 | None:intergenic |
| CCTCTCTGAGAAATACGGCA+AGG | 0.642652 | 4_1:-86522612 | Msa0581200:intron |
| GCAAATTAAGTGGCGCAAGG+TGG | 0.643864 | 4_1:-86518159 | Msa0581200:three_prime_UTR |
| GGAGCTGCAGTAATAGATGT+CGG | 0.646250 | 4_1:-86519040 | Msa0581200:CDS |
| CTGTCCTGAACAATCTGAGG+CGG | 0.658080 | 4_1:-86520427 | Msa0581200:CDS |
| GAAGTGGTGTAAGTATAAAG+GGG | 0.666613 | 4_1:-86519762 | Msa0581200:intron |
| ACTTGTGTGTGAATGAGCAA+TGG | 0.673957 | 4_1:+86519657 | None:intergenic |
| AGGAAGAAAATTGAAGAACA+CGG | 0.680017 | 4_1:-86520564 | Msa0581200:CDS |
| AGAGAGGATACGGACCTCGT+CGG | 0.680772 | 4_1:+86522628 | None:intergenic |
| GAGTGCAGGGAACAAAGAGA+GGG | 0.687238 | 4_1:+86522092 | None:intergenic |
| AGCACATACAGAGAACAAGA+GGG | 0.699285 | 4_1:+86518659 | None:intergenic |
| AATGCGCAATTTAAGTCACG+TGG | 0.705378 | 4_1:-86518183 | Msa0581200:three_prime_UTR |
| GCACATACAGAGAACAAGAG+GGG | 0.710443 | 4_1:+86518660 | None:intergenic |
| TCTTAGCAGAAACTGAACTG+AGG | 0.714720 | 4_1:+86518770 | None:intergenic |
| TTACGACCGAGACCTGGCGA+CGG | 0.715843 | 4_1:+86520504 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATGACATTTTTTATA+GGG | + | chr4_1:86518195-86518214 | None:intergenic | 10.0% |
| !!! | AATTAGTTTATAATTATGAA+TGG | - | chr4_1:86519149-86519168 | Msa0581200:intron | 10.0% |
| !!! | GTTTAATATTATATTTTCAT+AGG | - | chr4_1:86521614-86521633 | Msa0581200:intron | 10.0% |
| !!! | TTCCTTTAATTTTAAATAAA+AGG | - | chr4_1:86522194-86522213 | Msa0581200:CDS | 10.0% |
| !!! | TCCTTTAATTTTAAATAAAA+GGG | - | chr4_1:86522195-86522214 | Msa0581200:CDS | 10.0% |
| !!! | GTAATTATGACATTTTTTAT+AGG | + | chr4_1:86518196-86518215 | None:intergenic | 15.0% |
| !!! | TCTTTTTTACTGTATTTATT+TGG | - | chr4_1:86518749-86518768 | Msa0581200:three_prime_UTR | 15.0% |
| !! | AAAAAATCAATTAAGATTAC+TGG | - | chr4_1:86519202-86519221 | Msa0581200:intron | 15.0% |
| !! | AAAAATCAATTAAGATTACT+GGG | - | chr4_1:86519203-86519222 | Msa0581200:intron | 15.0% |
| !! | TTAAATACACTATTTAAAGA+AGG | + | chr4_1:86521191-86521210 | None:intergenic | 15.0% |
| !!! | TTTTTAAAAAAACATAGACT+TGG | + | chr4_1:86521492-86521511 | None:intergenic | 15.0% |
| !!! | TTTTTGTCAATTTTCAAATT+TGG | - | chr4_1:86521532-86521551 | Msa0581200:intron | 15.0% |
| !!! | TCCCTTTTATTTAAAATTAA+AGG | + | chr4_1:86522199-86522218 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTGAGAGTTAAAT+TGG | - | chr4_1:86518220-86518239 | Msa0581200:three_prime_UTR | 20.0% |
| !!! | TTTTTTGTGAGAGTTAAATT+GGG | - | chr4_1:86518221-86518240 | Msa0581200:three_prime_UTR | 20.0% |
| !! | TTCTCTTCATTTATATGTTT+GGG | + | chr4_1:86518823-86518842 | None:intergenic | 20.0% |
| !! | TTTCTCTTCATTTATATGTT+TGG | + | chr4_1:86518824-86518843 | None:intergenic | 20.0% |
| !! | ATTATGAATGGCATAAAAAA+TGG | - | chr4_1:86519161-86519180 | Msa0581200:intron | 20.0% |
| !! | AAAATCAATTAAGATTACTG+GGG | - | chr4_1:86519204-86519223 | Msa0581200:intron | 20.0% |
| !! | TAAAAAAATAAACATGTGAG+TGG | + | chr4_1:86519447-86519466 | None:intergenic | 20.0% |
| !!! | TTTTGAACTACTTTCTTTAA+AGG | - | chr4_1:86519920-86519939 | Msa0581200:intron | 20.0% |
| !!! | TTTTAAGTGATTAAACTTTG+CGG | - | chr4_1:86521085-86521104 | Msa0581200:intron | 20.0% |
| !!! | ACGCATAAATAGTTTTTAAA+TGG | - | chr4_1:86521581-86521600 | Msa0581200:intron | 20.0% |
| !!! | AAATAGTTTTTAAATGGTAG+CGG | - | chr4_1:86521587-86521606 | Msa0581200:intron | 20.0% |
| !! | AAATGAATGATATATAAGAG+TGG | - | chr4_1:86521681-86521700 | Msa0581200:intron | 20.0% |
| !!! | AATTTTCTAAAACTGTGTTT+TGG | + | chr4_1:86521848-86521867 | None:intergenic | 20.0% |
| !!! | ATTTACTTTTTCTTAGATCA+AGG | - | chr4_1:86521939-86521958 | Msa0581200:intron | 20.0% |
| !!! | TTTACTTTTTCTTAGATCAA+GGG | - | chr4_1:86521940-86521959 | Msa0581200:intron | 20.0% |
| !! | ACGTATTCTATAAAATTGTA+AGG | - | chr4_1:86522279-86522298 | Msa0581200:intron | 20.0% |
| !! | CGTATTCTATAAAATTGTAA+GGG | - | chr4_1:86522280-86522299 | Msa0581200:intron | 20.0% |
| !!! | TTCTTCTTTTTATAACAAAG+AGG | + | chr4_1:86522516-86522535 | None:intergenic | 20.0% |
| !!! | TTCTTCTTTTTATAACAAAG+AGG | + | chr4_1:86522516-86522535 | None:intergenic | 20.0% |
| ! | TTCAACTCAATTCTATCAAT+AGG | - | chr4_1:86518986-86519005 | Msa0581200:CDS | 25.0% |
| ! | TATCAATAGGAAAATAATCC+AGG | - | chr4_1:86518999-86519018 | Msa0581200:CDS | 25.0% |
| !! | TTTTGCTAGCTAAATTAGAA+CGG | - | chr4_1:86519518-86519537 | Msa0581200:intron | 25.0% |
| ! | TTAAGTGATTAAACTTTGCA+GGG | + | chr4_1:86520024-86520043 | None:intergenic | 25.0% |
| ! | TTTAAGTGATTAAACTTTGC+AGG | + | chr4_1:86521086-86521105 | None:intergenic | 25.0% |
| ! | ACAACATCAAAATCATATTC+CGG | - | chr4_1:86520723-86520742 | Msa0581200:intron | 25.0% |
| ! | TTTAAGTGATTAAACTTTGC+GGG | - | chr4_1:86521086-86521105 | Msa0581200:intron | 25.0% |
| !! | TGTCAATTTTCAAATTTGGA+TGG | - | chr4_1:86521536-86521555 | Msa0581200:intron | 25.0% |
| ! | TTAGCTCAATATAATTGATG+TGG | + | chr4_1:86521663-86521682 | None:intergenic | 25.0% |
| ! | TTGAGAAGATTAATAACAGT+GGG | + | chr4_1:86521906-86521925 | None:intergenic | 25.0% |
| ! | ATTGAGAAGATTAATAACAG+TGG | + | chr4_1:86521907-86521926 | None:intergenic | 25.0% |
| ! | TTCTATAAAATTGTAAGGGT+AGG | - | chr4_1:86522284-86522303 | Msa0581200:intron | 25.0% |
| !! | CTTTATTGGAATATTGCTTT+TGG | - | chr4_1:86522386-86522405 | Msa0581200:CDS | 25.0% |
| ! | AGAAGAAATAGGTTATATAC+AGG | + | chr4_1:86522472-86522491 | None:intergenic | 25.0% |
| ! | ATAAAGTATAGCACATACTT+GGG | + | chr4_1:86522584-86522603 | None:intergenic | 25.0% |
| ! | AATAAAGTATAGCACATACT+TGG | + | chr4_1:86522585-86522604 | None:intergenic | 25.0% |
| ! | AAGTATGTGCTATACTTTAT+TGG | - | chr4_1:86522584-86522603 | Msa0581200:intron | 25.0% |
| !! | CTTTATTGGAATATTGCTTT+TGG | - | chr4_1:86522386-86522405 | Msa0581200:CDS | 25.0% |
| ! | AGAAGAAATAGGTTATATAC+AGG | + | chr4_1:86522472-86522491 | None:intergenic | 25.0% |
| AAGATGATGAAGGAATGATT+GGG | + | chr4_1:86518440-86518459 | None:intergenic | 30.0% | |
| TTATATGTGTGCAGGTATAT+TGG | - | chr4_1:86518783-86518802 | Msa0581200:three_prime_UTR | 30.0% | |
| !! | GAATGAAGAGCATTTACTTT+GGG | + | chr4_1:86518952-86518971 | None:intergenic | 30.0% |
| !! | AGAATGAAGAGCATTTACTT+TGG | + | chr4_1:86518953-86518972 | None:intergenic | 30.0% |
| ! | CTCTTCATTCTCAAATCTTT+TGG | - | chr4_1:86518962-86518981 | Msa0581200:CDS | 30.0% |
| GCTCTGTTTGGTAAAAATAA+TGG | - | chr4_1:86519021-86519040 | Msa0581200:CDS | 30.0% | |
| !! | AAGCTAACTATAGTTGATAG+CGG | - | chr4_1:86519079-86519098 | Msa0581200:intron | 30.0% |
| CTGATTGAATTTGTAGTGTT+TGG | - | chr4_1:86519111-86519130 | Msa0581200:intron | 30.0% | |
| GTAGTGTTTGGTAAAATTAG+CGG | - | chr4_1:86519123-86519142 | Msa0581200:intron | 30.0% | |
| TAGTGTTTGGTAAAATTAGC+GGG | - | chr4_1:86519124-86519143 | Msa0581200:intron | 30.0% | |
| TGTCTTATAATCTCGTATGT+TGG | + | chr4_1:86519373-86519392 | None:intergenic | 30.0% | |
| TAAGACATAAGCTATAAGCT+CGG | - | chr4_1:86519386-86519405 | Msa0581200:intron | 30.0% | |
| TTTGCTAGCTAAATTAGAAC+GGG | - | chr4_1:86519519-86519538 | Msa0581200:intron | 30.0% | |
| ! | TTAATGCACAGTTTTCATTG+AGG | - | chr4_1:86519603-86519622 | Msa0581200:CDS | 30.0% |
| TAAGTGATTAAACTTTGCAG+GGG | + | chr4_1:86520023-86520042 | None:intergenic | 30.0% | |
| !!! | ATTTTGCTAATTTGATGACG+TGG | + | chr4_1:86520077-86520096 | None:intergenic | 30.0% |
| ACGTCATCAAATTAGCAAAA+TGG | - | chr4_1:86520076-86520095 | Msa0581200:intron | 30.0% | |
| ATCAAATTAGCAAAATGGCA+TGG | - | chr4_1:86520081-86520100 | Msa0581200:intron | 30.0% | |
| TCAAATTAGCAAAATGGCAT+GGG | - | chr4_1:86520082-86520101 | Msa0581200:intron | 30.0% | |
| AGAAAAGAAAATGATAGCAG+GGG | + | chr4_1:86520165-86520184 | None:intergenic | 30.0% | |
| GAGAAAAGAAAATGATAGCA+GGG | + | chr4_1:86520166-86520185 | None:intergenic | 30.0% | |
| AGAGAAAAGAAAATGATAGC+AGG | + | chr4_1:86520167-86520186 | None:intergenic | 30.0% | |
| TACTGTATTGTAGATTCAAG+AGG | + | chr4_1:86520303-86520322 | None:intergenic | 30.0% | |
| TTCTTTGCAAGATGAATTAG+TGG | - | chr4_1:86520375-86520394 | Msa0581200:CDS | 30.0% | |
| AGGAAGAAAATTGAAGAACA+CGG | - | chr4_1:86520455-86520474 | Msa0581200:CDS | 30.0% | |
| ! | TCATTTTGCACAATCATCTT+CGG | + | chr4_1:86520828-86520847 | None:intergenic | 30.0% |
| AGATGATTGTGCAAAATGAA+TGG | - | chr4_1:86520829-86520848 | Msa0581200:intron | 30.0% | |
| !! | GTAAAACAGATTGATGATGA+TGG | - | chr4_1:86520900-86520919 | Msa0581200:intron | 30.0% |
| CCATGATTGAAGAATAAACA+TGG | + | chr4_1:86520941-86520960 | None:intergenic | 30.0% | |
| CCATGTTTATTCTTCAATCA+TGG | - | chr4_1:86520938-86520957 | Msa0581200:intron | 30.0% | |
| GAGAAAGAAGATGAAATCAA+GGG | - | chr4_1:86520979-86520998 | Msa0581200:intron | 30.0% | |
| ATTTCACAGACAAACATGAA+AGG | + | chr4_1:86521014-86521033 | None:intergenic | 30.0% | |
| TTAAGTGATTAAACTTTGCG+GGG | - | chr4_1:86521087-86521106 | Msa0581200:intron | 30.0% | |
| ! | TACATATGCTACTTGTATTC+AGG | - | chr4_1:86521213-86521232 | Msa0581200:intron | 30.0% |
| TGTAAGTATAAAGGGGAAAA+GGG | - | chr4_1:86521264-86521283 | Msa0581200:intron | 30.0% | |
| TTCAAAAGCAGTAATGAAAC+TGG | + | chr4_1:86521325-86521344 | None:intergenic | 30.0% | |
| ACAAAAACTGCACATATACT+AGG | + | chr4_1:86521519-86521538 | None:intergenic | 30.0% | |
| AAATTTGGATGGTTCTTTCT+TGG | - | chr4_1:86521547-86521566 | Msa0581200:intron | 30.0% | |
| CAATATAATTGATGTGGAAC+TGG | + | chr4_1:86521657-86521676 | None:intergenic | 30.0% | |
| !!! | ACTCAAGTTTTAAACTTGAG+TGG | - | chr4_1:86521714-86521733 | Msa0581200:intron | 30.0% |
| AATATCATTGAGAGCAACAA+CGG | + | chr4_1:86521783-86521802 | None:intergenic | 30.0% | |
| GATATTCCTATAAACGACAT+TGG | - | chr4_1:86521797-86521816 | Msa0581200:intron | 30.0% | |
| ! | CATATACCAATGTCGTTTAT+AGG | + | chr4_1:86521806-86521825 | None:intergenic | 30.0% |
| AATGTTGCTGAAGAATACTT+TGG | - | chr4_1:86522134-86522153 | Msa0581200:CDS | 30.0% | |
| CTGTATGTGCTATACTTTAT+TGG | - | chr4_1:86522372-86522391 | Msa0581200:CDS | 30.0% | |
| ! | TTTTATAACAAAGAGGTTGC+AGG | + | chr4_1:86522509-86522528 | None:intergenic | 30.0% |
| ! | TTTTATAACAAAGAGGTTGC+AGG | + | chr4_1:86522509-86522528 | None:intergenic | 30.0% |
| TTTGTGAGAGTTAAATTGGG+TGG | - | chr4_1:86518224-86518243 | Msa0581200:three_prime_UTR | 35.0% | |
| GAAGATGATGAAGGAATGAT+TGG | + | chr4_1:86518441-86518460 | None:intergenic | 35.0% | |
| TCATCATCATCATCATCTTC+AGG | - | chr4_1:86518502-86518521 | Msa0581200:intron | 35.0% | |
| ATGCTTGATTACTTCAGCTT+CGG | + | chr4_1:86518654-86518673 | None:intergenic | 35.0% | |
| !! | GTTTGTTGTTATATGTGTGC+AGG | - | chr4_1:86518775-86518794 | Msa0581200:three_prime_UTR | 35.0% |
| TCATTTATATGTTTGGGCAG+TGG | + | chr4_1:86518817-86518836 | None:intergenic | 35.0% | |
| AAAATAATCCAGGCTCTGTT+TGG | - | chr4_1:86519009-86519028 | Msa0581200:CDS | 35.0% | |
| !! | TATTTTTACCAAACAGAGCC+TGG | + | chr4_1:86519020-86519039 | None:intergenic | 35.0% |
| !! | GCTCACAAACTAGCTTATTT+TGG | - | chr4_1:86519047-86519066 | Msa0581200:CDS | 35.0% |
| !!! | CTAGCTTATTTTGGATGACT+TGG | - | chr4_1:86519056-86519075 | Msa0581200:CDS | 35.0% |
| GAAAGTGACAATTACCAAAC+AGG | - | chr4_1:86519336-86519355 | Msa0581200:intron | 35.0% | |
| TAGCTAAATTAGAACGGGAT+AGG | - | chr4_1:86519524-86519543 | Msa0581200:intron | 35.0% | |
| GAAAACTGTGCATTAATGAC+AGG | + | chr4_1:86519599-86519618 | None:intergenic | 35.0% | |
| TGTAATTGTGCGTTCTTGAT+CGG | + | chr4_1:86519894-86519913 | None:intergenic | 35.0% | |
| ! | AAAAAGGATTAGCGATTGCA+GGG | + | chr4_1:86521116-86521135 | None:intergenic | 35.0% |
| ! | AAAAAAGGATTAGCGATTGC+AGG | + | chr4_1:86521115-86521134 | None:intergenic | 35.0% |
| ATACTTTGCTTAGTCAACGA+GGG | + | chr4_1:86520122-86520141 | None:intergenic | 35.0% | |
| AAGAAGGAAGAAGAAGGTAA+TGG | + | chr4_1:86520205-86520224 | None:intergenic | 35.0% | |
| AGAAGAAAGAAGGAAGAAGA+AGG | + | chr4_1:86520211-86520230 | None:intergenic | 35.0% | |
| CAAAGAATCAAATCCACACT+TGG | + | chr4_1:86520362-86520381 | None:intergenic | 35.0% | |
| TTGCAAGATGAATTAGTGGT+TGG | - | chr4_1:86520379-86520398 | Msa0581200:CDS | 35.0% | |
| TGCAAGATGAATTAGTGGTT+GGG | - | chr4_1:86520380-86520399 | Msa0581200:CDS | 35.0% | |
| !! | TGGTTGGGTTTTGATGTTTT+GGG | - | chr4_1:86520395-86520414 | Msa0581200:CDS | 35.0% |
| !!! | CTTTCGATGATGTTGTTTTG+CGG | + | chr4_1:86520752-86520771 | None:intergenic | 35.0% |
| ! | TGAAATCGTGTTGCAGTTTT+CGG | - | chr4_1:86520777-86520796 | Msa0581200:intron | 35.0% |
| TGTGCAAAATGAATGGTGAA+TGG | - | chr4_1:86520836-86520855 | Msa0581200:intron | 35.0% | |
| GTGCAAAATGAATGGTGAAT+GGG | - | chr4_1:86520837-86520856 | Msa0581200:intron | 35.0% | |
| GGTGTAAAACAGATTGATGA+TGG | - | chr4_1:86520876-86520895 | Msa0581200:intron | 35.0% | |
| GGAGAAAGAAGATGAAATCA+AGG | - | chr4_1:86520978-86520997 | Msa0581200:intron | 35.0% | |
| !! | CAGATGTTAATTTGATGACG+TGG | - | chr4_1:86521034-86521053 | Msa0581200:intron | 35.0% |
| TAAGTGATTAAACTTTGCGG+GGG | - | chr4_1:86521088-86521107 | Msa0581200:intron | 35.0% | |
| ! | AAAAAAGGATTAGCGATTGC+AGG | - | chr4_1:86521115-86521134 | Msa0581200:intron | 35.0% |
| ! | AAAAAGGATTAGCGATTGCA+GGG | - | chr4_1:86521116-86521135 | Msa0581200:intron | 35.0% |
| ! | TTTTTCGTCCCTGTAAATAG+GGG | + | chr4_1:86521158-86521177 | None:intergenic | 35.0% |
| ! | GTTTTTCGTCCCTGTAAATA+GGG | + | chr4_1:86521159-86521178 | None:intergenic | 35.0% |
| ! | TGTTTTTCGTCCCTGTAAAT+AGG | + | chr4_1:86521160-86521179 | None:intergenic | 35.0% |
| ACGAAGTGGTGTAAGTATAA+AGG | - | chr4_1:86521255-86521274 | Msa0581200:intron | 35.0% | |
| CGAAGTGGTGTAAGTATAAA+GGG | - | chr4_1:86521256-86521275 | Msa0581200:intron | 35.0% | |
| GAAGTGGTGTAAGTATAAAG+GGG | - | chr4_1:86521257-86521276 | Msa0581200:intron | 35.0% | |
| GTGTAAGTATAAAGGGGAAA+AGG | - | chr4_1:86521263-86521282 | Msa0581200:intron | 35.0% | |
| TAAACTTGAGTGGAGATATG+CGG | - | chr4_1:86521724-86521743 | Msa0581200:intron | 35.0% | |
| !!! | TAACAGTGGGCTATATTTTC+TGG | + | chr4_1:86521893-86521912 | None:intergenic | 35.0% |
| TTTCTTAGATCAAGGGAAGT+TGG | - | chr4_1:86521947-86521966 | Msa0581200:intron | 35.0% | |
| ! | TGTTGGAGATGTAGATTTTG+AGG | - | chr4_1:86522047-86522066 | Msa0581200:intron | 35.0% |
| AATTACGGTGGCCATTTGAT+CGG | + | chr4_1:86518331-86518350 | None:intergenic | 40.0% | |
| CGTATTTCTCAGAGAGGATA+CGG | + | chr4_1:86518404-86518423 | None:intergenic | 40.0% | |
| ! | CGTATCCTCTCTGAGAAATA+CGG | - | chr4_1:86518402-86518421 | Msa0581200:intron | 40.0% |
| AATCTCGCGAGAAATTGGAA+GGG | + | chr4_1:86518481-86518500 | None:intergenic | 40.0% | |
| ATGAGAATCTCGCGAGAAAT+TGG | + | chr4_1:86518486-86518505 | None:intergenic | 40.0% | |
| !! | AGAAAAGCTTGCGCTGATTT+GGG | - | chr4_1:86518590-86518609 | Msa0581200:three_prime_UTR | 40.0% |
| ! | CTTCGGAAATTTGTTCAGGA+AGG | + | chr4_1:86518637-86518656 | None:intergenic | 40.0% |
| ! | TCAGCTTCGGAAATTTGTTC+AGG | + | chr4_1:86518641-86518660 | None:intergenic | 40.0% |
| AGTGACTCACCATGTACATT+GGG | + | chr4_1:86518698-86518717 | None:intergenic | 40.0% | |
| AAGTGACTCACCATGTACAT+TGG | + | chr4_1:86518699-86518718 | None:intergenic | 40.0% | |
| GGCTTTCATCCTTTGAACAT+CGG | - | chr4_1:86518880-86518899 | Msa0581200:CDS | 40.0% | |
| ATGTGAGTGGAATTCATCGA+GGG | + | chr4_1:86519434-86519453 | None:intergenic | 40.0% | |
| AAATGACTCTTCGCATGAGT+AGG | + | chr4_1:86519719-86519738 | None:intergenic | 40.0% | |
| TATTGTAACAACCTTCCCAC+AGG | + | chr4_1:86519835-86519854 | None:intergenic | 40.0% | |
| ! | TGTTTTTCGTCCCTGCAAAT+AGG | - | chr4_1:86519951-86519970 | Msa0581200:intron | 40.0% |
| ! | GTTTTTCGTCCCTGCAAATA+GGG | - | chr4_1:86519952-86519971 | Msa0581200:intron | 40.0% |
| ! | TTTTTCGTCCCTGCAAATAG+GGG | - | chr4_1:86519953-86519972 | Msa0581200:intron | 40.0% |
| CTTTGCAGGGGCAAAAAAAA+AGG | + | chr4_1:86520011-86520030 | None:intergenic | 40.0% | |
| !! | GCATTGATTAACTGGGTCAA+GGG | + | chr4_1:86521056-86521075 | None:intergenic | 40.0% |
| !! | TGACGTGGCATTGATTAACT+GGG | + | chr4_1:86521049-86521068 | None:intergenic | 40.0% |
| !! | ATGACGTGGCATTGATTAAC+TGG | + | chr4_1:86521048-86521067 | None:intergenic | 40.0% |
| TTAGCAAAATGGCATGGGAA+TGG | - | chr4_1:86520087-86520106 | Msa0581200:intron | 40.0% | |
| CATACTTTGCTTAGTCAACG+AGG | + | chr4_1:86520123-86520142 | None:intergenic | 40.0% | |
| ! | CTCGTTGACTAAGCAAAGTA+TGG | - | chr4_1:86520121-86520140 | Msa0581200:intron | 40.0% |
| ! | AAGGAAGAAGAAGGTAATGG+TGG | + | chr4_1:86520202-86520221 | None:intergenic | 40.0% |
| ! | ATTGCTGTTGCTATTGCTGT+TGG | + | chr4_1:86520253-86520272 | None:intergenic | 40.0% |
| !! | CACTTGGTTTGTTAAGCTTC+TGG | + | chr4_1:86520346-86520365 | None:intergenic | 40.0% |
| GAAGCTTAACAAACCAAGTG+TGG | - | chr4_1:86520346-86520365 | Msa0581200:CDS | 40.0% | |
| !! | GTGGTTGGGTTTTGATGTTT+TGG | - | chr4_1:86520394-86520413 | Msa0581200:CDS | 40.0% |
| !!! | GGTTTTGATGTTTTGGGACA+CGG | - | chr4_1:86520401-86520420 | Msa0581200:CDS | 40.0% |
| GAGAAGAGGATGAAGAAGAA+AGG | - | chr4_1:86520435-86520454 | Msa0581200:CDS | 40.0% | |
| !!! | TGATGTTGTTTTGCGGTTAC+CGG | + | chr4_1:86520745-86520764 | None:intergenic | 40.0% |
| TGAATGGTGAATGGGATTGT+AGG | - | chr4_1:86520845-86520864 | Msa0581200:intron | 40.0% | |
| ATGGGATTGTAGGACAATGA+AGG | - | chr4_1:86520855-86520874 | Msa0581200:intron | 40.0% | |
| ATGGAACACGAGAAAGAAGA+GGG | - | chr4_1:86520957-86520976 | Msa0581200:intron | 40.0% | |
| !! | ATGACGTGGCATTGATTAAC+TGG | - | chr4_1:86521048-86521067 | Msa0581200:intron | 40.0% |
| !! | TGACGTGGCATTGATTAACT+GGG | - | chr4_1:86521049-86521068 | Msa0581200:intron | 40.0% |
| !! | GCATTGATTAACTGGGTCAA+GGG | - | chr4_1:86521056-86521075 | Msa0581200:intron | 40.0% |
| TTTAAGCGACCCCTATTTAC+AGG | - | chr4_1:86521146-86521165 | Msa0581200:intron | 40.0% | |
| TTAAGCGACCCCTATTTACA+GGG | - | chr4_1:86521147-86521166 | Msa0581200:intron | 40.0% | |
| CTTGAACTATTGTCACGAAG+TGG | - | chr4_1:86521241-86521260 | Msa0581200:intron | 40.0% | |
| ! | GTTGGTAGAAGCAACATAGT+CGG | - | chr4_1:86521295-86521314 | Msa0581200:intron | 40.0% |
| TTGGTAGAAGCAACATAGTC+GGG | - | chr4_1:86521296-86521315 | Msa0581200:intron | 40.0% | |
| !! | GCTTTTGAAAGCAGATGCTA+CGG | - | chr4_1:86521336-86521355 | Msa0581200:intron | 40.0% |
| ACTTGTGTGTGAATGAGCAA+TGG | + | chr4_1:86521365-86521384 | None:intergenic | 40.0% | |
| ! | GATATTGTTATTGCAGCAGC+AGG | - | chr4_1:86521412-86521431 | Msa0581200:intron | 40.0% |
| CATAGGAACCTAAGTGTTTG+TGG | - | chr4_1:86521631-86521650 | Msa0581200:intron | 40.0% | |
| ATCAAGATTGTCAAGAGAGC+TGG | + | chr4_1:86521753-86521772 | None:intergenic | 40.0% | |
| !!! | GCTATATTTTCTGGAGTGTG+AGG | + | chr4_1:86521884-86521903 | None:intergenic | 40.0% |
| AAGGGAAGTTGGATAAAACC+TGG | - | chr4_1:86521958-86521977 | Msa0581200:intron | 40.0% | |
| !! | ATTCTGTTGATGACCCAACT+AGG | - | chr4_1:86522007-86522026 | Msa0581200:intron | 40.0% |
| TATAACCTGCCTTCCTAGTT+GGG | + | chr4_1:86522023-86522042 | None:intergenic | 40.0% | |
| ! | AAGCATCTAAAGTTGCTGGT+TGG | - | chr4_1:86522070-86522089 | Msa0581200:intron | 40.0% |
| AGCAACATTGTGACTGTCAT+TGG | + | chr4_1:86522123-86522142 | None:intergenic | 40.0% | |
| TCTTAGCAGAAACTGAACTG+AGG | + | chr4_1:86522252-86522271 | None:intergenic | 40.0% | |
| AAAAAGATCAAGAGCAGGGA+AGG | + | chr4_1:86522339-86522358 | None:intergenic | 40.0% | |
| AGCACATACAGAGAACAAGA+GGG | + | chr4_1:86522363-86522382 | None:intergenic | 40.0% | |
| TAGCACATACAGAGAACAAG+AGG | + | chr4_1:86522364-86522383 | None:intergenic | 40.0% | |
| TACAGAGGGGAAGAAGAAAT+AGG | + | chr4_1:86522483-86522502 | None:intergenic | 40.0% | |
| TACAGAGGGGAAGAAGAAAT+AGG | + | chr4_1:86522483-86522502 | None:intergenic | 40.0% | |
| ! | AACTAGCGCATGGACATTTT+GGG | + | chr4_1:86522796-86522815 | None:intergenic | 40.0% |
| ! | TAACTAGCGCATGGACATTT+TGG | + | chr4_1:86522797-86522816 | None:intergenic | 40.0% |
| AATGCGCAATTTAAGTCACG+TGG | - | chr4_1:86522836-86522855 | Msa0581200:five_prime_UTR | 40.0% | |
| CAAATGGCCACCGTAATTGA+CGG | - | chr4_1:86518333-86518352 | Msa0581200:intron | 45.0% | |
| AGATCGGATTGTTTGTGCCA+CGG | + | chr4_1:86518364-86518383 | None:intergenic | 45.0% | |
| ATCGCGAGAGAAGATGATGA+AGG | + | chr4_1:86518450-86518469 | None:intergenic | 45.0% | |
| ATCTCGCGAGAAATTGGAAG+GGG | + | chr4_1:86518480-86518499 | None:intergenic | 45.0% | |
| GAATCTCGCGAGAAATTGGA+AGG | + | chr4_1:86518482-86518501 | None:intergenic | 45.0% | |
| !! | CATCATCATCTTCAGGTTGC+TGG | - | chr4_1:86518509-86518528 | Msa0581200:intron | 45.0% |
| GACTTGCAGTGGTGATAGTA+GGG | - | chr4_1:86518531-86518550 | Msa0581200:intron | 45.0% | |
| !! | GAGAAAAGCTTGCGCTGATT+TGG | - | chr4_1:86518589-86518608 | Msa0581200:three_prime_UTR | 45.0% |
| AACGCTGATCCCAATGTACA+TGG | - | chr4_1:86518686-86518705 | Msa0581200:three_prime_UTR | 45.0% | |
| GACTGAAATCAGCCTTGAGA+AGG | - | chr4_1:86518849-86518868 | Msa0581200:exon | 45.0% | |
| AGCCTTGAGAAGGATGTTGA+TGG | - | chr4_1:86518859-86518878 | Msa0581200:CDS | 45.0% | |
| AGCCATCAACATCCTTCTCA+AGG | + | chr4_1:86518864-86518883 | None:intergenic | 45.0% | |
| ! | GCATTTACTTTGGGAGTGCA+GGG | + | chr4_1:86518943-86518962 | None:intergenic | 45.0% |
| ! | AGCATTTACTTTGGGAGTGC+AGG | + | chr4_1:86518944-86518963 | None:intergenic | 45.0% |
| TGGTTGAGATCGAACCTGTT+TGG | + | chr4_1:86519353-86519372 | None:intergenic | 45.0% | |
| GAATTCATCGAGGGTCTGTT+TGG | + | chr4_1:86519425-86519444 | None:intergenic | 45.0% | |
| CATGTGAGTGGAATTCATCG+AGG | + | chr4_1:86519435-86519454 | None:intergenic | 45.0% | |
| !! | AACCTTCCCACAGGTTTTAG+GGG | + | chr4_1:86519826-86519845 | None:intergenic | 45.0% |
| ! | CAACCTTCCCACAGGTTTTA+GGG | + | chr4_1:86519827-86519846 | None:intergenic | 45.0% |
| ! | ACAACCTTCCCACAGGTTTT+AGG | + | chr4_1:86519828-86519847 | None:intergenic | 45.0% |
| TTAAGCGACCCCTATTTGCA+GGG | + | chr4_1:86519964-86519983 | None:intergenic | 45.0% | |
| TTTAAGCGACCCCTATTTGC+AGG | + | chr4_1:86519965-86519984 | None:intergenic | 45.0% | |
| !! | GGCATTGATTAACTGGGTCA+AGG | + | chr4_1:86521055-86521074 | None:intergenic | 45.0% |
| ! | GAAGAAGAAGGTAATGGTGG+AGG | + | chr4_1:86520199-86520218 | None:intergenic | 45.0% |
| ! | TGTTGCTATTGCTGTTGGTG+GGG | + | chr4_1:86520248-86520267 | None:intergenic | 45.0% |
| ! | CTGTTGCTATTGCTGTTGGT+GGG | + | chr4_1:86520249-86520268 | None:intergenic | 45.0% |
| ! | TGTGACTGTGTTGACATTGC+CGG | + | chr4_1:86520658-86520677 | None:intergenic | 45.0% |
| TTAGTGTTGTGACTGTGTCG+TGG | + | chr4_1:86520691-86520710 | None:intergenic | 45.0% | |
| !!! | GAAGCTGCTTTTTCCGTCAT+CGG | + | chr4_1:86520806-86520825 | None:intergenic | 45.0% |
| CATGGAACACGAGAAAGAAG+AGG | - | chr4_1:86520956-86520975 | Msa0581200:intron | 45.0% | |
| !! | GGCATTGATTAACTGGGTCA+AGG | - | chr4_1:86521055-86521074 | Msa0581200:intron | 45.0% |
| CTTTGCGGGGGCAAAAAAAA+AGG | - | chr4_1:86521100-86521119 | Msa0581200:intron | 45.0% | |
| GCTTCACGTATGATGTCTTC+TGG | + | chr4_1:86521391-86521410 | None:intergenic | 45.0% | |
| ACATCTATTACTGCAGCTCC+AGG | + | chr4_1:86521979-86521998 | None:intergenic | 45.0% | |
| GGAGCTGCAGTAATAGATGT+CGG | - | chr4_1:86521979-86521998 | Msa0581200:intron | 45.0% | |
| !! | TGTTGATGACCCAACTAGGA+AGG | - | chr4_1:86522011-86522030 | Msa0581200:intron | 45.0% |
| CTATAACCTGCCTTCCTAGT+TGG | + | chr4_1:86522024-86522043 | None:intergenic | 45.0% | |
| CAACTAGGAAGGCAGGTTAT+AGG | - | chr4_1:86522022-86522041 | Msa0581200:intron | 45.0% | |
| AAGGCAGGTTATAGGCTTGT+TGG | - | chr4_1:86522030-86522049 | Msa0581200:intron | 45.0% | |
| !! | GAGGAAGCATCTAAAGTTGC+TGG | - | chr4_1:86522066-86522085 | Msa0581200:intron | 45.0% |
| GGGGAAAAAGATCAAGAGCA+GGG | + | chr4_1:86522343-86522362 | None:intergenic | 45.0% | |
| AGGGGAAAAAGATCAAGAGC+AGG | + | chr4_1:86522344-86522363 | None:intergenic | 45.0% | |
| GCACATACAGAGAACAAGAG+GGG | + | chr4_1:86522362-86522381 | None:intergenic | 45.0% | |
| GTATAGCACATACTTGGGCA+TGG | + | chr4_1:86522579-86522598 | None:intergenic | 45.0% | |
| !!! | TGTTTATTTTTTTATAATAT+AGG | - | chr4_1:86519453-86519472 | Msa0581200:intron | 5.0% |
| !!! | GTTTATTTTTTTATAATATA+GGG | - | chr4_1:86519454-86519473 | Msa0581200:intron | 5.0% |
| CGCAACCTTCTCCGATCAAA+TGG | - | chr4_1:86518317-86518336 | Msa0581200:intron | 50.0% | |
| CACGGCTTTGCCGTCAATTA+CGG | + | chr4_1:86518346-86518365 | None:intergenic | 50.0% | |
| CCTTGCCGTATTTCTCAGAG+AGG | + | chr4_1:86518410-86518429 | None:intergenic | 50.0% | |
| ! | CCTCTCTGAGAAATACGGCA+AGG | - | chr4_1:86518407-86518426 | Msa0581200:intron | 50.0% |
| TCTCGCGAGAAATTGGAAGG+GGG | + | chr4_1:86518479-86518498 | None:intergenic | 50.0% | |
| GGACTTGCAGTGGTGATAGT+AGG | - | chr4_1:86518530-86518549 | Msa0581200:intron | 50.0% | |
| GCAAGCTTGCCGATGTTCAA+AGG | + | chr4_1:86518892-86518911 | None:intergenic | 50.0% | |
| ATCGGCAAGCTTGCCATGAA+AGG | - | chr4_1:86518898-86518917 | Msa0581200:CDS | 50.0% | |
| GAGTGCAGGGAACAAAGAGA+GGG | + | chr4_1:86518930-86518949 | None:intergenic | 50.0% | |
| CATCGAGGGTCTGTTTGGTA+AGG | + | chr4_1:86519420-86519439 | None:intergenic | 50.0% | |
| TGTGATCCCCCTAAAACCTG+TGG | - | chr4_1:86519816-86519835 | Msa0581200:intron | 50.0% | |
| GTGATCCCCCTAAAACCTGT+GGG | - | chr4_1:86519817-86519836 | Msa0581200:intron | 50.0% | |
| !!! | ACCTTCCCACAGGTTTTAGG+GGG | + | chr4_1:86519825-86519844 | None:intergenic | 50.0% |
| TGTGCGTTCTTGATCGGCAT+GGG | + | chr4_1:86519888-86519907 | None:intergenic | 50.0% | |
| TTGTGCGTTCTTGATCGGCA+TGG | + | chr4_1:86519889-86519908 | None:intergenic | 50.0% | |
| ! | GTGGTGGGAGAGAAGAAAGA+AGG | + | chr4_1:86520221-86520240 | None:intergenic | 50.0% |
| ! | TTGCTATTGCTGTTGGTGGG+GGG | + | chr4_1:86520246-86520265 | None:intergenic | 50.0% |
| ! | GTTGCTATTGCTGTTGGTGG+GGG | + | chr4_1:86520247-86520266 | None:intergenic | 50.0% |
| ! | GCTGTTGCTATTGCTGTTGG+TGG | + | chr4_1:86520250-86520269 | None:intergenic | 50.0% |
| CGGTTGCAGAAGAAGAGAAG+AGG | - | chr4_1:86520421-86520440 | Msa0581200:CDS | 50.0% | |
| TGCCTGTCCTGAACAATCTG+AGG | - | chr4_1:86520589-86520608 | Msa0581200:CDS | 50.0% | |
| CTGTCCTGAACAATCTGAGG+CGG | - | chr4_1:86520592-86520611 | Msa0581200:CDS | 50.0% | |
| ACATTGCCGGCGTTTAAGAG+CGG | + | chr4_1:86520645-86520664 | None:intergenic | 50.0% | |
| AAAGGGGAAAAGGGCAGTTG+TGG | - | chr4_1:86521273-86521292 | Msa0581200:intron | 50.0% | |
| TGTTATTGCAGCAGCAGGAC+AGG | - | chr4_1:86521417-86521436 | Msa0581200:intron | 50.0% | |
| GGAACTGGCCACAAACACTT+AGG | + | chr4_1:86521642-86521661 | None:intergenic | 50.0% | |
| GGTTGGATTACTCCTGTTCC+TGG | - | chr4_1:86522087-86522106 | Msa0581200:CDS | 50.0% | |
| TGGATTACTCCTGTTCCTGG+AGG | - | chr4_1:86522090-86522109 | Msa0581200:CDS | 50.0% | |
| AGGTTGCAGGCATTACAGAG+GGG | + | chr4_1:86522496-86522515 | None:intergenic | 50.0% | |
| GAGGTTGCAGGCATTACAGA+GGG | + | chr4_1:86522497-86522516 | None:intergenic | 50.0% | |
| AGAGGTTGCAGGCATTACAG+AGG | + | chr4_1:86522498-86522517 | None:intergenic | 50.0% | |
| AGGTTGCAGGCATTACAGAG+GGG | + | chr4_1:86522496-86522515 | None:intergenic | 50.0% | |
| GAGGTTGCAGGCATTACAGA+GGG | + | chr4_1:86522497-86522516 | None:intergenic | 50.0% | |
| AGAGGTTGCAGGCATTACAG+AGG | + | chr4_1:86522498-86522517 | None:intergenic | 50.0% | |
| ! | ACATTTTGGGCATGGCTGCA+GGG | + | chr4_1:86522783-86522802 | None:intergenic | 50.0% |
| TGCGCTAGTTAACTAGCGCA+TGG | + | chr4_1:86522806-86522825 | None:intergenic | 50.0% | |
| GTCACGTGGCGCAAATTAAG+TGG | - | chr4_1:86522850-86522869 | Msa0581200:five_prime_UTR | 50.0% | |
| GCAAATTAAGTGGCGCAAGG+TGG | - | chr4_1:86522860-86522879 | Msa0581200:five_prime_UTR | 50.0% | |
| GGTGGCCATTTGATCGGAGA+AGG | + | chr4_1:86518325-86518344 | None:intergenic | 55.0% | |
| GGCTTTGCCGTCAATTACGG+TGG | + | chr4_1:86518343-86518362 | None:intergenic | 55.0% | |
| CGTAATTGACGGCAAAGCCG+TGG | - | chr4_1:86518344-86518363 | Msa0581200:intron | 55.0% | |
| CCTCGTCGGCGATTTCAGAT+CGG | + | chr4_1:86518380-86518399 | None:intergenic | 55.0% | |
| AGAGAGGATACGGACCTCGT+CGG | + | chr4_1:86518394-86518413 | None:intergenic | 55.0% | |
| CTCGCGAGAAATTGGAAGGG+GGG | + | chr4_1:86518478-86518497 | None:intergenic | 55.0% | |
| ! | TCAGGTTGCTGGACTTGCAG+TGG | - | chr4_1:86518520-86518539 | Msa0581200:intron | 55.0% |
| GAGAGGGTCTCTGCCTTTCA+TGG | + | chr4_1:86518914-86518933 | None:intergenic | 55.0% | |
| GGAGTGCAGGGAACAAAGAG+AGG | + | chr4_1:86518931-86518950 | None:intergenic | 55.0% | |
| TCCCCCTAAAACCTGTGGGA+AGG | - | chr4_1:86519821-86519840 | Msa0581200:intron | 55.0% | |
| ! | CGAAGGCATGGTTGAGGTGA+CGG | + | chr4_1:86520550-86520569 | None:intergenic | 55.0% |
| GGCAAGTGAGACAAGGCACA+CGG | + | chr4_1:86520573-86520592 | None:intergenic | 55.0% | |
| CAGGACAGGCAAGTGAGACA+AGG | + | chr4_1:86520580-86520599 | None:intergenic | 55.0% | |
| CGCCTCAGATTGTTCAGGAC+AGG | + | chr4_1:86520594-86520613 | None:intergenic | 55.0% | |
| CGTACCGCCTCAGATTGTTC+AGG | + | chr4_1:86520599-86520618 | None:intergenic | 55.0% | |
| ! | CAGTTTTCGGCGACCGATGA+CGG | - | chr4_1:86520790-86520809 | Msa0581200:intron | 55.0% |
| GGGAAAAGGGCAGTTGTGGT+TGG | - | chr4_1:86521277-86521296 | Msa0581200:intron | 55.0% | |
| AGCAGCAGGACAGGCAAAGA+TGG | - | chr4_1:86521426-86521445 | Msa0581200:intron | 55.0% | |
| GATGACCCAACTAGGAAGGC+AGG | - | chr4_1:86522015-86522034 | Msa0581200:intron | 55.0% | |
| ! | ACTCCTGTTCCTGGAGGTGT+AGG | - | chr4_1:86522096-86522115 | Msa0581200:CDS | 55.0% |
| GTCATTGGACCTACACCTCC+AGG | + | chr4_1:86522108-86522127 | None:intergenic | 55.0% | |
| ! | GTGCGAGTGTTTTGTGCTGC+GGG | + | chr4_1:86522549-86522568 | None:intergenic | 55.0% |
| ! | GGTGCGAGTGTTTTGTGCTG+CGG | + | chr4_1:86522550-86522569 | None:intergenic | 55.0% |
| CATACTTGGGCATGGCTGCA+GGG | + | chr4_1:86522571-86522590 | None:intergenic | 55.0% | |
| ACATACTTGGGCATGGCTGC+AGG | + | chr4_1:86522572-86522591 | None:intergenic | 55.0% | |
| ! | GTGCGAGTGTTTTGTGCTGC+GGG | + | chr4_1:86522549-86522568 | None:intergenic | 55.0% |
| ! | GGTGCGAGTGTTTTGTGCTG+CGG | + | chr4_1:86522550-86522569 | None:intergenic | 55.0% |
| ! | GACATTTTGGGCATGGCTGC+AGG | + | chr4_1:86522784-86522803 | None:intergenic | 55.0% |
| ! | GCGCATGGACATTTTGGGCA+TGG | + | chr4_1:86522791-86522810 | None:intergenic | 55.0% |
| GGCGCAAATTAAGTGGCGCA+AGG | - | chr4_1:86522857-86522876 | Msa0581200:five_prime_UTR | 55.0% | |
| ! | CCGATCTGAAATCGCCGACG+AGG | - | chr4_1:86518377-86518396 | Msa0581200:intron | 60.0% |
| ! | CTATTGCTGTTGGTGGGGGG+CGG | + | chr4_1:86520243-86520262 | None:intergenic | 60.0% |
| TTACGACCGAGACCTGGCGA+CGG | + | chr4_1:86520518-86520537 | None:intergenic | 60.0% | |
| ! | ATGGTTGAGGTGACGGCAGG+CGG | + | chr4_1:86520543-86520562 | None:intergenic | 60.0% |
| ! | ACACGGCGAAGGCATGGTTG+AGG | + | chr4_1:86520556-86520575 | None:intergenic | 60.0% |
| TGAGACAAGGCACACGGCGA+AGG | + | chr4_1:86520567-86520586 | None:intergenic | 60.0% | |
| !! | TTTAAGAGCGGTACCGGCGC+TGG | + | chr4_1:86520633-86520652 | None:intergenic | 60.0% |
| CCGGCGTTTAAGAGCGGTAC+CGG | + | chr4_1:86520639-86520658 | None:intergenic | 60.0% | |
| CCGGTACCGCTCTTAAACGC+CGG | - | chr4_1:86520636-86520655 | Msa0581200:intron | 60.0% | |
| GGACCTACACCTCCAGGAAC+AGG | + | chr4_1:86522102-86522121 | None:intergenic | 60.0% | |
| ! | GATAGAGTGCCACCGTCGCC+AGG | - | chr4_1:86520503-86520522 | Msa0581200:CDS | 65.0% |
| GCGGAGTTACGACCGAGACC+TGG | + | chr4_1:86520524-86520543 | None:intergenic | 65.0% | |
| ! | GGCATGGTTGAGGTGACGGC+AGG | + | chr4_1:86520546-86520565 | None:intergenic | 65.0% |
| CAAGGCACACGGCGAAGGCA+TGG | + | chr4_1:86520562-86520581 | None:intergenic | 65.0% | |
| ! | TGTTGGTGGGGGGCGGTGGT+GGG | + | chr4_1:86520236-86520255 | None:intergenic | 70.0% |
| ! | TTGCTGTTGGTGGGGGGCGG+TGG | + | chr4_1:86520240-86520259 | None:intergenic | 70.0% |
| GTGCCACCGTCGCCAGGTCT+CGG | - | chr4_1:86520509-86520528 | Msa0581200:CDS | 70.0% | |
| CGCAACCTCTGCTCCAGCGC+CGG | - | chr4_1:86520617-86520636 | Msa0581200:CDS | 70.0% | |
| ! | CTGTTGGTGGGGGGCGGTGG+TGG | + | chr4_1:86520237-86520256 | None:intergenic | 75.0% |
| CGACCGAGACCTGGCGACGG+TGG | + | chr4_1:86520515-86520534 | None:intergenic | 75.0% | |
| !! | CGGTACCGGCGCTGGAGCAG+AGG | + | chr4_1:86520625-86520644 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 86518158 | 86522883 | 86518158 | ID=Msa0581200;Name=Msa0581200 |
| chr4_1 | mRNA | 86518158 | 86522883 | 86518158 | ID=Msa0581200-mRNA-1;Parent=Msa0581200;Name=Msa0581200-mRNA-1;_AED=0.12;_eAED=0.12;_QI=178|0.66|0.71|1|0.83|0.71|7|480|402 |
| chr4_1 | exon | 86518158 | 86518329 | 86518158 | ID=Msa0581200-mRNA-1:exon:32037;Parent=Msa0581200-mRNA-1 |
| chr4_1 | exon | 86518542 | 86519086 | 86518542 | ID=Msa0581200-mRNA-1:exon:32036;Parent=Msa0581200-mRNA-1 |
| chr4_1 | exon | 86519594 | 86519780 | 86519594 | ID=Msa0581200-mRNA-1:exon:32035;Parent=Msa0581200-mRNA-1 |
| chr4_1 | exon | 86520297 | 86520646 | 86520297 | ID=Msa0581200-mRNA-1:exon:32034;Parent=Msa0581200-mRNA-1 |
| chr4_1 | exon | 86522087 | 86522244 | 86522087 | ID=Msa0581200-mRNA-1:exon:32033;Parent=Msa0581200-mRNA-1 |
| chr4_1 | exon | 86522334 | 86522517 | 86522334 | ID=Msa0581200-mRNA-1:exon:32032;Parent=Msa0581200-mRNA-1 |
| chr4_1 | exon | 86522613 | 86522883 | 86522613 | ID=Msa0581200-mRNA-1:exon:32031;Parent=Msa0581200-mRNA-1 |
| chr4_1 | five_prime_UTR | 86522706 | 86522883 | 86522706 | ID=Msa0581200-mRNA-1:five_prime_utr;Parent=Msa0581200-mRNA-1 |
| chr4_1 | CDS | 86522613 | 86522705 | 86522613 | ID=Msa0581200-mRNA-1:cds;Parent=Msa0581200-mRNA-1 |
| chr4_1 | CDS | 86522334 | 86522517 | 86522334 | ID=Msa0581200-mRNA-1:cds;Parent=Msa0581200-mRNA-1 |
| chr4_1 | CDS | 86522087 | 86522244 | 86522087 | ID=Msa0581200-mRNA-1:cds;Parent=Msa0581200-mRNA-1 |
| chr4_1 | CDS | 86520297 | 86520646 | 86520297 | ID=Msa0581200-mRNA-1:cds;Parent=Msa0581200-mRNA-1 |
| chr4_1 | CDS | 86519594 | 86519780 | 86519594 | ID=Msa0581200-mRNA-1:cds;Parent=Msa0581200-mRNA-1 |
| chr4_1 | CDS | 86518850 | 86519086 | 86518850 | ID=Msa0581200-mRNA-1:cds;Parent=Msa0581200-mRNA-1 |
| chr4_1 | three_prime_UTR | 86518542 | 86518849 | 86518542 | ID=Msa0581200-mRNA-1:three_prime_utr;Parent=Msa0581200-mRNA-1 |
| chr4_1 | three_prime_UTR | 86518158 | 86518329 | 86518158 | ID=Msa0581200-mRNA-1:three_prime_utr;Parent=Msa0581200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
