AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046020 MtrunA17_Chr1g0213271 98.241 739 8 1 3 741 2 735 0.0 1501
Msa0046020 MtrunA17_Chr4g0011301 82.970 734 117 2 7 740 9 734 0.0 1259
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046020 AT2G45290.1 81.016 748 126 2 1 740 1 740 0.0 1276
Msa0046020 AT2G45290.2 81.016 748 126 2 1 740 1 740 0.0 1276
Msa0046020 AT3G60750.1 82.927 738 126 0 1 738 1 738 0.0 1273
Msa0046020 AT3G60750.2 82.791 738 126 1 1 738 1 737 0.0 1266

Find 240 sgRNAs with CRISPR-Local

Find 646 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTTGTAACAACTATTT+TGG 0.152362 1_1:+78040780 Msa0046020:three_prime_UTR
GACAGCCTTTGCTTCCTTAA+TGG 0.175474 1_1:-78038805 None:intergenic
AGTGATGATGCACGAATTTC+AGG 0.178899 1_1:-78037183 None:intergenic
AAGGTTCTTCCTGGTCTTAT+TGG 0.215510 1_1:+78039694 Msa0046020:CDS
AATCGAACATTGCGCTCTTC+TGG 0.242416 1_1:-78039787 None:intergenic
TTAAACCAAGAAGGATTCTT+TGG 0.258486 1_1:-78037495 None:intergenic
AGACAAACCTACTTTGATTA+AGG 0.266496 1_1:+78038830 Msa0046020:CDS
TATGCTCTTCTTCATCTTGC+TGG 0.269634 1_1:+78037564 Msa0046020:CDS
AGTAGAGTGTTAAGAGTGTT+TGG 0.271016 1_1:-78037023 None:intergenic
GTAGCATCAGCAGGGGTTTC+CGG 0.275225 1_1:-78039634 None:intergenic
ACCATTGGCATTGATCGATT+TGG 0.287349 1_1:+78040477 Msa0046020:CDS
CTTGCCGGACATTGGGGTCT+TGG 0.291105 1_1:+78038627 Msa0046020:CDS
CACTTGGATGGCATGTGATT+TGG 0.296401 1_1:+78038742 Msa0046020:CDS
GCAAAAGTTGCCTAACCTTC+CGG 0.305640 1_1:+78040152 Msa0046020:CDS
CCAATGAAACCCACAAGTTC+TGG 0.312539 1_1:-78040617 None:intergenic
CCTCAATTCTTGCCCTTTCT+CGG 0.314282 1_1:+78040130 Msa0046020:CDS
ATAACCCAAAGAATCCTTCT+TGG 0.318239 1_1:+78037490 Msa0046020:CDS
GCTCTTCTGGAGTAGCCTTT+TGG 0.321780 1_1:-78039774 None:intergenic
ATGACTTTGTTGAAATCGTT+TGG 0.325235 1_1:+78039745 Msa0046020:CDS
TGCTGTTGAGAAAGCTAATT+CGG 0.326611 1_1:+78037401 Msa0046020:CDS
GTGTTCACTTGCCGGACATT+GGG 0.326670 1_1:+78038620 Msa0046020:CDS
ACAGATCTATGAAACTTCTT+TGG 0.327073 1_1:-78040568 None:intergenic
CCAGAACTTGTGGGTTTCAT+TGG 0.330675 1_1:+78040617 Msa0046020:three_prime_UTR
CTGCCGCCGCTGATGATCTA+AGG 0.331163 1_1:+78040286 Msa0046020:CDS
AATGAAGCGTGTTCACTTGC+CGG 0.335597 1_1:+78038612 Msa0046020:CDS
TGAAATTCGTGCAGCCATTA+AGG 0.339511 1_1:+78038791 Msa0046020:CDS
GTAGAGTGTTAAGAGTGTTT+GGG 0.340029 1_1:-78037022 None:intergenic
TTGTTTAGGTCCTCTGGGTC+AGG 0.341996 1_1:+78038332 Msa0046020:intron
GCTTCGAGTGCAGCACCCTC+AGG 0.351157 1_1:-78039309 None:intergenic
CTGTAGGAATTAGCTTTGTT+TGG 0.355528 1_1:-78039086 None:intergenic
GTTACCACTACCATTGGATT+TGG 0.357397 1_1:+78039059 Msa0046020:CDS
GCCCTGGCCAAGGTTCTTCC+TGG 0.357791 1_1:+78039685 Msa0046020:CDS
AATTTCAGGGTTGAGGTATA+CGG 0.371548 1_1:-78037169 None:intergenic
CAAGAATTGAGGGTCTCTTC+TGG 0.372757 1_1:-78040119 None:intergenic
CAAAAGTTGCCTAACCTTCC+GGG 0.374567 1_1:+78040153 Msa0046020:CDS
TGCTCTAGGTATGTTATATT+AGG 0.377773 1_1:+78038561 Msa0046020:intron
GCAATGTTCGATTTGGTGTC+AGG 0.378142 1_1:+78039797 Msa0046020:CDS
AAGCTTGCCAGGTGCTCTAT+TGG 0.380074 1_1:-78040015 None:intergenic
GGTAGGTGGTAGTGTTTGTT+TGG 0.385985 1_1:-78036974 None:intergenic
ACCCATGGGTTGTGCTCCAA+TGG 0.386484 1_1:+78037437 Msa0046020:CDS
GCATTGCTCGGAAGCTTGCC+AGG 0.387618 1_1:-78040026 None:intergenic
TTCTATTGAAGGTGTTGAAA+AGG 0.389406 1_1:+78040179 Msa0046020:CDS
ACAAAGAAAGTTGCACAGTA+TGG 0.395938 1_1:-78039877 None:intergenic
TCGTGAATTACCTGCTGATT+GGG 0.402483 1_1:+78039407 Msa0046020:CDS
GGCTGGTGTGGTTCTGCGAC+GGG 0.402529 1_1:-78037286 None:intergenic
ATTGAGGCGGGATCAACATT+TGG 0.403681 1_1:+78040423 Msa0046020:CDS
CCGTGCAGCCAAGTGCTTCT+CGG 0.404020 1_1:-78038385 None:intergenic
GAAGAGCGCAATGTTCGATT+TGG 0.405488 1_1:+78039790 Msa0046020:CDS
ACAGCGGTGGCGCGGATGGC+TGG 0.406479 1_1:-78037303 None:intergenic
ACTTGGATGGCATGTGATTT+GGG 0.407932 1_1:+78038743 Msa0046020:CDS
ATCGTGAATTACCTGCTGAT+TGG 0.408577 1_1:+78039406 Msa0046020:CDS
CCGGCTGAGGAGGTTGCTGC+TGG 0.411767 1_1:-78037261 None:intergenic
GGGAAAATATACAAGGAGTA+TGG 0.412527 1_1:+78040516 Msa0046020:CDS
GAACTTGTGGGTTTCATTGG+TGG 0.412549 1_1:+78040620 Msa0046020:three_prime_UTR
CGTGTTCACTTGCCGGACAT+TGG 0.412603 1_1:+78038619 Msa0046020:CDS
TGTGGTTCTGCGACGGGAAC+CGG 0.416883 1_1:-78037280 None:intergenic
CAGGGTATTGCCAATGGTGT+TGG 0.421847 1_1:+78038351 Msa0046020:CDS
CAGTGTTCACGGAGCTGCAT+TGG 0.425068 1_1:+78039106 Msa0046020:CDS
GTTATGACCCATGATTCAAT+TGG 0.427272 1_1:+78039964 Msa0046020:CDS
TAAACCAAGAAGGATTCTTT+GGG 0.427395 1_1:-78037494 None:intergenic
CTTGAAGCAGTTTCGACAAT+GGG 0.430255 1_1:+78038142 Msa0046020:CDS
CTAATCAATCAATCACACTA+TGG 0.432938 1_1:+78037101 Msa0046020:exon
GAAGGAGAGGGAAGAAGTGG+AGG 0.433182 1_1:-78037208 None:intergenic
CCCGAGAACTTCGAGACATA+TGG 0.433908 1_1:+78038185 Msa0046020:CDS
TTTGGTTGGCATAAGATTGT+TGG 0.433955 1_1:+78040441 Msa0046020:CDS
TGATTGGGAGAAAGCACTTC+CGG 0.439162 1_1:+78039422 Msa0046020:CDS
AGCAGAAATAACAGCTTCCT+TGG 0.441956 1_1:-78040544 None:intergenic
ATTAGGAGATGGTTGTCAAA+TGG 0.442289 1_1:+78038578 Msa0046020:CDS
GGACGAAGCATCAAAACATT+TGG 0.442772 1_1:-78040048 None:intergenic
CTCCAAGTCCAATTGAATCA+TGG 0.443401 1_1:-78039972 None:intergenic
AGTGTTCACGGAGCTGCATT+GGG 0.447236 1_1:+78039107 Msa0046020:CDS
ATAGAAGTTCCCGGAAGGTT+AGG 0.449217 1_1:-78040162 None:intergenic
ACTCTAGCTGTCACAGAAGC+AGG 0.449310 1_1:-78040396 None:intergenic
GGCACATGGAAAGGCTCATA+TGG 0.449701 1_1:-78039170 None:intergenic
GACCAGGAAGAACCTTGGCC+AGG 0.451334 1_1:-78039687 None:intergenic
ACACAAGGCAGAAATCCTTA+TGG 0.451743 1_1:-78039923 None:intergenic
CCGAGAAAGGGCAAGAATTG+AGG 0.453215 1_1:-78040130 None:intergenic
AGATTTCTTGTAGCATCAGC+AGG 0.453550 1_1:-78039643 None:intergenic
GGAGGATTTGAGTGCAGGGA+AGG 0.456187 1_1:-78037226 None:intergenic
CCCATGGGTTGTGCTCCAAT+GGG 0.456524 1_1:+78037438 Msa0046020:CDS
ACCCATGATTCAATTGGACT+TGG 0.457470 1_1:+78039970 Msa0046020:CDS
TGCTCTATTGGCTGATGAGT+TGG 0.458639 1_1:-78040003 None:intergenic
TCTGCGACGGGAACCGGCTG+AGG 0.459678 1_1:-78037274 None:intergenic
TTCGACAGCGGTGGCGCGGA+TGG 0.460246 1_1:-78037307 None:intergenic
ACACCTTCAATAGAAGTTCC+CGG 0.462136 1_1:-78040171 None:intergenic
GATGCTACAAGGCAGAATCT+TGG 0.465252 1_1:+78039143 Msa0046020:CDS
CTTCCGGGAACTTCTATTGA+AGG 0.465653 1_1:+78040168 Msa0046020:CDS
CACAGTATGGAATGAATCCC+GGG 0.466716 1_1:-78039864 None:intergenic
GGGTCACCCGGGTTTACCCA+TGG 0.467220 1_1:+78037422 Msa0046020:CDS
TCCATATGTCTCGAAGTTCT+CGG 0.472304 1_1:-78038186 None:intergenic
ACCTGATGAGTTGTCTGAAA+TGG 0.472367 1_1:-78040211 None:intergenic
TGGGTAAAGAACGGAAATAC+TGG 0.473280 1_1:+78038762 Msa0046020:CDS
GATAATCACATATCTATTGA+TGG 0.473309 1_1:+78038672 Msa0046020:CDS
GTTCTTCCTGGTCTTATTGG+TGG 0.473340 1_1:+78039697 Msa0046020:CDS
CAACAAAGTCATGTTGGAAG+AGG 0.473739 1_1:-78039734 None:intergenic
TAGATCATCAGCGGCGGCAG+CGG 0.475603 1_1:-78040283 None:intergenic
TTTGAGTGCAGGGAAGGAGA+GGG 0.475826 1_1:-78037220 None:intergenic
GGTCACCCGGGTTTACCCAT+GGG 0.476254 1_1:+78037423 Msa0046020:CDS
GCAGTTTCATTACCATCAGC+TGG 0.477799 1_1:-78040069 None:intergenic
TCTATTGAAGGTGTTGAAAA+GGG 0.479009 1_1:+78040180 Msa0046020:CDS
TTTCTCAACGAGAGAAGCTT+CGG 0.481299 1_1:-78037346 None:intergenic
CGAGAAAGGGCAAGAATTGA+GGG 0.481642 1_1:-78040129 None:intergenic
GAAGAGGAGGATTTGAGTGC+AGG 0.481728 1_1:-78037231 None:intergenic
CCGAGAAGCACTTGGCTGCA+CGG 0.482213 1_1:+78038385 Msa0046020:CDS
AGGGAAGGAGAGGGAAGAAG+TGG 0.484686 1_1:-78037211 None:intergenic
TCAATTGGACTTGGAGAGGA+TGG 0.485462 1_1:+78039979 Msa0046020:CDS
GCTAATTCCTACAGTGTTCA+CGG 0.486135 1_1:+78039095 Msa0046020:CDS
GTGCAGCACCCTCAGGGGTA+TGG 0.486259 1_1:-78039302 None:intergenic
GATAGAATATAGAATATGAT+TGG 0.486625 1_1:-78036995 None:intergenic
ATTTGAGTGCAGGGAAGGAG+AGG 0.487969 1_1:-78037221 None:intergenic
ATTGGTTATCTCACGTGTAA+TGG 0.488265 1_1:-78038437 None:intergenic
ATTTCTGCCTTGTGTGAAGC+CGG 0.489758 1_1:+78039931 Msa0046020:CDS
AGAGGAGGCTGCAGAGCTAA+AGG 0.490701 1_1:+78039374 Msa0046020:CDS
AGATGATGAGATGGATTGAG+AGG 0.490737 1_1:+78036885 Msa0046020:five_prime_UTR
GAAAGCTAATTCGGGTCACC+CGG 0.492182 1_1:+78037410 Msa0046020:CDS
CCATATGTCTCGAAGTTCTC+GGG 0.492717 1_1:-78038185 None:intergenic
GCTGTTGAGAAAGCTAATTC+GGG 0.492728 1_1:+78037402 Msa0046020:CDS
TCGAAGTTCTCGGGATGTCC+AGG 0.493290 1_1:-78038176 None:intergenic
TCACTAACCTTAATCAAAGT+AGG 0.493636 1_1:-78038837 None:intergenic
GAGAGGTAGATAAGTGAGGG+AGG 0.494374 1_1:+78036902 Msa0046020:five_prime_UTR
GATTGAGAGGTAGATAAGTG+AGG 0.495345 1_1:+78036898 Msa0046020:five_prime_UTR
TTTCGTTGTTTAGGTCCTCT+GGG 0.495503 1_1:+78038327 Msa0046020:intron
TGACAGGTTACCACTACCAT+TGG 0.495504 1_1:+78039053 Msa0046020:intron
TGGTATTGCTCTTCATAGCC+CGG 0.502685 1_1:+78039846 Msa0046020:CDS
GTGATGATGCACGAATTTCA+GGG 0.503452 1_1:-78037182 None:intergenic
AAGAGGAGGATTTGAGTGCA+GGG 0.503870 1_1:-78037230 None:intergenic
TGTTTAGGTCCTCTGGGTCA+GGG 0.504143 1_1:+78038333 Msa0046020:intron
TGGTCAACAATCTCACTGTC+AGG 0.504469 1_1:-78038417 None:intergenic
ACATCTTCTGGCACATGGAA+AGG 0.505808 1_1:-78039179 None:intergenic
TAAATAGATAGATGATGAGA+TGG 0.507367 1_1:+78036876 Msa0046020:five_prime_UTR
GTTCCAATCAAAATAACATC+AGG 0.510531 1_1:-78040240 None:intergenic
TCCAAGTCCAATTGAATCAT+GGG 0.511215 1_1:-78039971 None:intergenic
GGCACTTGCCGAGAAGCACT+TGG 0.512393 1_1:+78038377 Msa0046020:CDS
CTTTCCAAGACCCCAATGTC+CGG 0.512394 1_1:-78038631 None:intergenic
CATAAGATTGTTGGAAGCAA+GGG 0.513540 1_1:+78040450 Msa0046020:CDS
ACCATTTCAGACAACTCATC+AGG 0.514190 1_1:+78040210 Msa0046020:CDS
GATTGGAACTGGTTCTGAGT+TGG 0.514884 1_1:+78040254 Msa0046020:CDS
AGGCGGGATCAACATTTGGT+TGG 0.515586 1_1:+78040427 Msa0046020:CDS
TTTGGAGCAAGTGCTCCAGC+AGG 0.522166 1_1:+78040495 Msa0046020:CDS
TCAAAACATTTGGCATTGCT+CGG 0.524118 1_1:-78040038 None:intergenic
CGATTTCAACAAAGTCATGT+TGG 0.524839 1_1:-78039740 None:intergenic
CTGGGTCAGGGTATTGCCAA+TGG 0.525385 1_1:+78038345 Msa0046020:CDS
ATTGAGAGGTAGATAAGTGA+GGG 0.525755 1_1:+78036899 Msa0046020:five_prime_UTR
TGGTGTCAGGGAACACGCAA+TGG 0.526615 1_1:+78039810 Msa0046020:CDS
TGGCTGGTGTGGTTCTGCGA+CGG 0.526744 1_1:-78037287 None:intergenic
ATCGTTTGGAGATTTCCAAA+AGG 0.533264 1_1:+78039759 Msa0046020:CDS
TAGAGTGTTAAGAGTGTTTG+GGG 0.533837 1_1:-78037021 None:intergenic
GCGACGGGAACCGGCTGAGG+AGG 0.535292 1_1:-78037271 None:intergenic
CTTCGAGTGCAGCACCCTCA+GGG 0.535328 1_1:-78039308 None:intergenic
GGTATTGCTCTTCATAGCCC+GGG 0.537364 1_1:+78039847 Msa0046020:CDS
GATTAGAGAATAATCAATCA+AGG 0.540601 1_1:-78037084 None:intergenic
GCACAGTATGGAATGAATCC+CGG 0.542998 1_1:-78039865 None:intergenic
ATGCACGAATTTCAGGGTTG+AGG 0.545728 1_1:-78037176 None:intergenic
ACTACATGAGAGCTGCCATA+AGG 0.547176 1_1:+78039908 Msa0046020:CDS
GCACAACCCATGGGTAAACC+CGG 0.548154 1_1:-78037429 None:intergenic
GCATAAGATTGTTGGAAGCA+AGG 0.550996 1_1:+78040449 Msa0046020:CDS
TTCTTTCCTTAGATCATCAG+CGG 0.551042 1_1:-78040292 None:intergenic
TATTGCCAATGGTGTTGGAT+TGG 0.553474 1_1:+78038356 Msa0046020:CDS
CAATCTATTCATCCTTATTG+TGG 0.554150 1_1:-78040692 None:intergenic
ACCCATTGGAGCACAACCCA+TGG 0.554735 1_1:-78037439 None:intergenic
CTCTAGCATGTGATTCTCAA+AGG 0.557117 1_1:+78040715 Msa0046020:three_prime_UTR
GAATATAGAATATGATTGGT+AGG 0.557946 1_1:-78036991 None:intergenic
CAATGGGGAAGCAAAACTCC+TGG 0.558532 1_1:+78038158 Msa0046020:CDS
ATCAATCAAGGAGAAGAAGA+AGG 0.558863 1_1:-78037072 None:intergenic
ACCAGGAAGAACCTTGGCCA+GGG 0.559298 1_1:-78039686 None:intergenic
GGTGTCAGGGAACACGCAAT+GGG 0.559362 1_1:+78039811 Msa0046020:CDS
CCAGCAGCAACCTCCTCAGC+CGG 0.562774 1_1:+78037261 Msa0046020:CDS
TTGATGCTTCGTCCAGCTGA+TGG 0.563709 1_1:+78040057 Msa0046020:CDS
CTAAAGAAGTAGATGCTACA+AGG 0.563711 1_1:+78039132 Msa0046020:CDS
AGTGCTTTCTCCCAATCAGC+AGG 0.564870 1_1:-78039417 None:intergenic
GCTAGAGTCAGCATTGAGGC+GGG 0.565493 1_1:+78040411 Msa0046020:CDS
GCTGATGATCTAAGGAAAGA+AGG 0.567319 1_1:+78040294 Msa0046020:CDS
CGATCACGATTAAACCAAGA+AGG 0.567796 1_1:-78037504 None:intergenic
CTCAACGAGAGAAGCTTCGG+TGG 0.568704 1_1:-78037343 None:intergenic
AGGTATGTTATATTAGGAGA+TGG 0.568803 1_1:+78038567 Msa0046020:intron
AAATCTAAATGCCCTGGCCA+AGG 0.569724 1_1:+78039675 Msa0046020:CDS
TCGTATAGAATGTGACCCAT+TGG 0.570278 1_1:-78037453 None:intergenic
ACAGCAAAATCTAAATGCCC+TGG 0.570304 1_1:+78039669 Msa0046020:CDS
AGAACCAAATCCAATGGTAG+TGG 0.571113 1_1:-78039063 None:intergenic
TGATCAGTCAGATGAATACA+AGG 0.572341 1_1:+78040362 Msa0046020:CDS
TCATCAGCCAATAGAGCACC+TGG 0.576120 1_1:+78040008 Msa0046020:CDS
CAATGTTCGATTTGGTGTCA+GGG 0.577817 1_1:+78039798 Msa0046020:CDS
GTGTTTCGACAGCGGTGGCG+CGG 0.578804 1_1:-78037311 None:intergenic
TGCTGGTTTGCATGAAGAGG+AGG 0.579652 1_1:-78037244 None:intergenic
TCTCAACAGCATCGATAGCA+AGG 0.579895 1_1:-78037389 None:intergenic
GGAGATGGTTGTCAAATGGA+AGG 0.581318 1_1:+78038582 Msa0046020:CDS
GCTGATGGTAATGAAACTGC+TGG 0.585057 1_1:+78040072 Msa0046020:CDS
GTTTGGAGAACCAAATCCAA+TGG 0.585421 1_1:-78039069 None:intergenic
TCAGAGCACATCTAGAGAAG+TGG 0.585449 1_1:-78040853 None:intergenic
TGCTGCTGGTTTGCATGAAG+AGG 0.585541 1_1:-78037247 None:intergenic
TGGAGTCGCCATACCCCTGA+GGG 0.588668 1_1:+78039294 Msa0046020:CDS
AGCTAGAGTCAGCATTGAGG+CGG 0.588951 1_1:+78040410 Msa0046020:CDS
ACTTGAAGCAGTTTCGACAA+TGG 0.594500 1_1:+78038141 Msa0046020:CDS
GGTGGCGCGGATGGCTGGTG+TGG 0.595740 1_1:-78037298 None:intergenic
CTCTAGCTGTCACAGAAGCA+GGG 0.598577 1_1:-78040395 None:intergenic
GGTCATAACATAAATAACTC+CGG 0.599500 1_1:-78039950 None:intergenic
TGCAGCCATTAAGGAAGCAA+AGG 0.600893 1_1:+78038800 Msa0046020:CDS
TGATTCAATTGGACTTGGAG+AGG 0.602455 1_1:+78039975 Msa0046020:CDS
TCTCTAGATGTGCTCTGACG+TGG 0.602803 1_1:+78040858 Msa0046020:three_prime_UTR
ATAGATAGCAAAGAAAGCAT+AGG 0.603910 1_1:+78036927 Msa0046020:five_prime_UTR
TGTTCACTTGCCGGACATTG+GGG 0.608345 1_1:+78038621 Msa0046020:CDS
TATGGCAGCTCTCATGTAGT+CGG 0.609330 1_1:-78039905 None:intergenic
AAGTGCCAATCCAACACCAT+TGG 0.610021 1_1:-78038361 None:intergenic
TCCAAATCGATCAATGCCAA+TGG 0.610681 1_1:-78040478 None:intergenic
CAACTTTCAGACTTACACTC+CGG 0.611225 1_1:+78039615 Msa0046020:intron
GAAGTTTCATAGATCTGTCG+AGG 0.611999 1_1:+78040573 Msa0046020:exon
CCCATTGGAGCACAACCCAT+GGG 0.612164 1_1:-78037438 None:intergenic
GTCGAGTGTTTCGACAGCGG+TGG 0.613682 1_1:-78037316 None:intergenic
ATTGAAGGTGTTGAAAAGGG+TGG 0.614729 1_1:+78040183 Msa0046020:CDS
GATTTCTTGTAGCATCAGCA+GGG 0.614806 1_1:-78039642 None:intergenic
AATAAGACCAGGAAGAACCT+TGG 0.616495 1_1:-78039692 None:intergenic
AATAACTCCGGCTTCACACA+AGG 0.617620 1_1:-78039938 None:intergenic
AAAGCTAATTCGGGTCACCC+GGG 0.618320 1_1:+78037411 Msa0046020:CDS
CTACAAGGCAGAATCTTGGA+TGG 0.619439 1_1:+78039147 Msa0046020:CDS
GGGTCTCTTCTGGTTAAGCA+CGG 0.620082 1_1:-78040109 None:intergenic
TCCAGCAGGGAAAATATACA+AGG 0.623690 1_1:+78040509 Msa0046020:CDS
CATGTGATTTGGGTAAAGAA+CGG 0.627359 1_1:+78038753 Msa0046020:CDS
TGAGAAGAAATACAAAGAGG+AGG 0.628944 1_1:+78039359 Msa0046020:CDS
TTTGTTTGGTGTATAAGCTG+TGG 0.629056 1_1:-78036960 None:intergenic
TGCTGGTTATGACAGTGTCA+AGG 0.631432 1_1:+78037581 Msa0046020:CDS
TGCAGCTCCGTGAACACTGT+AGG 0.641746 1_1:-78039102 None:intergenic
TATGGAATTGAAGTCACCAC+AGG 0.643063 1_1:+78038203 Msa0046020:CDS
TGAGGTATACGGCACGTGCG+AGG 0.647297 1_1:-78037158 None:intergenic
GTGCTGCACTCGAAGCTGAG+TGG 0.649503 1_1:+78039316 Msa0046020:CDS
TTGGAGTCGCCATACCCCTG+AGG 0.652993 1_1:+78039293 Msa0046020:CDS
CACAACCCATGGGTAAACCC+GGG 0.653503 1_1:-78037428 None:intergenic
TTTGTCGAGTGTTTCGACAG+CGG 0.655709 1_1:-78037319 None:intergenic
GCAATGGGAGCAATCTGCAA+TGG 0.655788 1_1:+78039826 Msa0046020:CDS
TTGGAGCAAGTGCTCCAGCA+GGG 0.659920 1_1:+78040496 Msa0046020:CDS
TATAGAATATGATTGGTAGG+TGG 0.661002 1_1:-78036988 None:intergenic
TTCGAGTGCAGCACCCTCAG+GGG 0.661757 1_1:-78039307 None:intergenic
GCACTGCCACCAATAAGACC+AGG 0.667283 1_1:-78039703 None:intergenic
CTTCAATAGAAGTTCCCGGA+AGG 0.667722 1_1:-78040167 None:intergenic
TTGAAGCAGTTTCGACAATG+GGG 0.670618 1_1:+78038143 Msa0046020:CDS
ATTTCTTGTAGCATCAGCAG+GGG 0.674247 1_1:-78039641 None:intergenic
GTATGAGAAGAAATACAAAG+AGG 0.678342 1_1:+78039356 Msa0046020:CDS
GACAGCTAGAGTCAGCATTG+AGG 0.680303 1_1:+78040407 Msa0046020:CDS
CAAGGAGTATGGCATAACCA+AGG 0.693332 1_1:+78040527 Msa0046020:CDS
TTTCCTTAGATCATCAGCGG+CGG 0.694677 1_1:-78040289 None:intergenic
TTGGCAATACCCTGACCCAG+AGG 0.713966 1_1:-78038342 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGATAAAATATTGAAATT+TGG - chr1_1:78037687-78037706 None:intergenic 10.0%
!!! TGAAAATTACTTTAATATTT+TGG + chr1_1:78037902-78037921 Msa0046020:intron 10.0%
!! TAAGATAAAATATTGAAATT+TGG - chr1_1:78037687-78037706 None:intergenic 10.0%
!!! TGAAAATTACTTTAATATTT+TGG + chr1_1:78037902-78037921 Msa0046020:intron 10.0%
!! TAATCAATTTATCTATAACA+TGG - chr1_1:78038900-78038919 None:intergenic 15.0%
!! TATAGATAAATTGATTATAC+TGG + chr1_1:78038903-78038922 Msa0046020:intron 15.0%
!!! GTTGTTATATCATTTTTATT+TGG + chr1_1:78038982-78039001 Msa0046020:intron 15.0%
!! TAATCAATTTATCTATAACA+TGG - chr1_1:78038900-78038919 None:intergenic 15.0%
!! TATAGATAAATTGATTATAC+TGG + chr1_1:78038903-78038922 Msa0046020:intron 15.0%
!!! GTTGTTATATCATTTTTATT+TGG + chr1_1:78038982-78039001 Msa0046020:intron 15.0%
!! GATAGAATATAGAATATGAT+TGG - chr1_1:78036998-78037017 None:intergenic 20.0%
!!! TTCTATTACTTTTAAACTTG+TGG + chr1_1:78037723-78037742 Msa0046020:intron 20.0%
!! TTAAAATTGAAAATCTGCAA+TGG + chr1_1:78037779-78037798 Msa0046020:intron 20.0%
!!! ATTACTTTAATATTTTGGCT+TGG + chr1_1:78037907-78037926 Msa0046020:intron 20.0%
!!! TTTGGGTTGAATAAAATAAT+AGG + chr1_1:78038112-78038131 Msa0046020:intron 20.0%
!!! TTATCTTTTGCTTTTGTTTT+TGG + chr1_1:78038536-78038555 Msa0046020:intron 20.0%
!! ATTTATCTATAACATGGATT+GGG - chr1_1:78038894-78038913 None:intergenic 20.0%
!! AATTTATCTATAACATGGAT+TGG - chr1_1:78038895-78038914 None:intergenic 20.0%
!!! AATTTTGATTACTATTTGAC+AGG + chr1_1:78039037-78039056 Msa0046020:intron 20.0%
!!! AAGATGTTAAAAAGTATGAA+TGG + chr1_1:78039195-78039214 Msa0046020:intron 20.0%
!!! AGATGTTAAAAAGTATGAAT+GGG + chr1_1:78039196-78039215 Msa0046020:intron 20.0%
!!! TGAATTTGTAACAACTATTT+TGG + chr1_1:78040780-78040799 Msa0046020:three_prime_UTR 20.0%
!! GATAGAATATAGAATATGAT+TGG - chr1_1:78036998-78037017 None:intergenic 20.0%
!!! TTCTATTACTTTTAAACTTG+TGG + chr1_1:78037723-78037742 Msa0046020:intron 20.0%
!! TTAAAATTGAAAATCTGCAA+TGG + chr1_1:78037779-78037798 Msa0046020:intron 20.0%
!!! ATTACTTTAATATTTTGGCT+TGG + chr1_1:78037907-78037926 Msa0046020:intron 20.0%
!!! TTTGGGTTGAATAAAATAAT+AGG + chr1_1:78038112-78038131 Msa0046020:intron 20.0%
!!! TTATCTTTTGCTTTTGTTTT+TGG + chr1_1:78038536-78038555 Msa0046020:intron 20.0%
!! ATTTATCTATAACATGGATT+GGG - chr1_1:78038894-78038913 None:intergenic 20.0%
!! AATTTATCTATAACATGGAT+TGG - chr1_1:78038895-78038914 None:intergenic 20.0%
!!! AATTTTGATTACTATTTGAC+AGG + chr1_1:78039037-78039056 Msa0046020:intron 20.0%
!!! AAGATGTTAAAAAGTATGAA+TGG + chr1_1:78039195-78039214 Msa0046020:intron 20.0%
!!! AGATGTTAAAAAGTATGAAT+GGG + chr1_1:78039196-78039215 Msa0046020:intron 20.0%
!!! TGAATTTGTAACAACTATTT+TGG + chr1_1:78040780-78040799 Msa0046020:three_prime_UTR 20.0%
! TAAATAGATAGATGATGAGA+TGG + chr1_1:78036876-78036895 Msa0046020:five_prime_UTR 25.0%
! GAATATAGAATATGATTGGT+AGG - chr1_1:78036994-78037013 None:intergenic 25.0%
! GATTAGAGAATAATCAATCA+AGG - chr1_1:78037087-78037106 None:intergenic 25.0%
!! AAGTATTTTTCTCCTTTGTT+TGG - chr1_1:78037828-78037847 None:intergenic 25.0%
! TAGTAATGAAATTGTTAGTC+AGG - chr1_1:78038033-78038052 None:intergenic 25.0%
!!! TGTTATTTTTATAAGACCTG+TGG - chr1_1:78038222-78038241 None:intergenic 25.0%
! AACAAGTAACAAGATGTAAT+TGG - chr1_1:78038458-78038477 None:intergenic 25.0%
! GATAATCACATATCTATTGA+TGG + chr1_1:78038672-78038691 Msa0046020:CDS 25.0%
!!! TCATACTTTTTAACATCTTC+TGG - chr1_1:78039194-78039213 None:intergenic 25.0%
!!! TTTCTATTGATTTTGTCTTG+AGG + chr1_1:78039469-78039488 Msa0046020:intron 25.0%
!!! TTTTTTAATCCAGAACTTGT+GGG + chr1_1:78040608-78040627 Msa0046020:three_prime_UTR 25.0%
!!! ATATCATTTTAGCCACAATA+AGG + chr1_1:78040680-78040699 Msa0046020:three_prime_UTR 25.0%
!!! TTTCTCAATTTTTTCACAAG+AGG + chr1_1:78040901-78040920 Msa0046020:three_prime_UTR 25.0%
! TAAATAGATAGATGATGAGA+TGG + chr1_1:78036876-78036895 Msa0046020:five_prime_UTR 25.0%
! GAATATAGAATATGATTGGT+AGG - chr1_1:78036994-78037013 None:intergenic 25.0%
! GATTAGAGAATAATCAATCA+AGG - chr1_1:78037087-78037106 None:intergenic 25.0%
!! AAGTATTTTTCTCCTTTGTT+TGG - chr1_1:78037828-78037847 None:intergenic 25.0%
! TAGTAATGAAATTGTTAGTC+AGG - chr1_1:78038033-78038052 None:intergenic 25.0%
!!! TGTTATTTTTATAAGACCTG+TGG - chr1_1:78038222-78038241 None:intergenic 25.0%
! AACAAGTAACAAGATGTAAT+TGG - chr1_1:78038458-78038477 None:intergenic 25.0%
! GATAATCACATATCTATTGA+TGG + chr1_1:78038672-78038691 Msa0046020:CDS 25.0%
!!! TCATACTTTTTAACATCTTC+TGG - chr1_1:78039194-78039213 None:intergenic 25.0%
!!! TTTCTATTGATTTTGTCTTG+AGG + chr1_1:78039469-78039488 Msa0046020:intron 25.0%
!!! TTTTTTAATCCAGAACTTGT+GGG + chr1_1:78040608-78040627 Msa0046020:three_prime_UTR 25.0%
!!! ATATCATTTTAGCCACAATA+AGG + chr1_1:78040680-78040699 Msa0046020:three_prime_UTR 25.0%
!!! TTTCTCAATTTTTTCACAAG+AGG + chr1_1:78040901-78040920 Msa0046020:three_prime_UTR 25.0%
! ATAGATAGCAAAGAAAGCAT+AGG + chr1_1:78036927-78036946 Msa0046020:five_prime_UTR 30.0%
TATAGAATATGATTGGTAGG+TGG - chr1_1:78036991-78037010 None:intergenic 30.0%
CTAATCAATCAATCACACTA+TGG + chr1_1:78037101-78037120 Msa0046020:exon 30.0%
TAAACCAAGAAGGATTCTTT+GGG - chr1_1:78037497-78037516 None:intergenic 30.0%
TTAAACCAAGAAGGATTCTT+TGG - chr1_1:78037498-78037517 None:intergenic 30.0%
AGTTGAGAAGAGAAGTAAAT+TGG - chr1_1:78037661-78037680 None:intergenic 30.0%
TGAAATTTATCTAATCCCAC+AGG - chr1_1:78037749-78037768 None:intergenic 30.0%
ATAGGTTCAAATCCAAACAA+AGG + chr1_1:78037813-78037832 Msa0046020:intron 30.0%
TAATGAATTGATATGCACAG+TGG + chr1_1:78038053-78038072 Msa0046020:intron 30.0%
CATTACAGAAGAAGCAAAAA+AGG - chr1_1:78038287-78038306 None:intergenic 30.0%
! TCCTTGTATTTTCGTTGTTT+AGG + chr1_1:78038318-78038337 Msa0046020:intron 30.0%
ACCTAAACAACGAAAATACA+AGG - chr1_1:78038322-78038341 None:intergenic 30.0%
TAAATGTCACATTACGAATC+AGG - chr1_1:78038519-78038538 None:intergenic 30.0%
! TGCTCTAGGTATGTTATATT+AGG + chr1_1:78038561-78038580 Msa0046020:intron 30.0%
AGGTATGTTATATTAGGAGA+TGG + chr1_1:78038567-78038586 Msa0046020:intron 30.0%
AGACAAACCTACTTTGATTA+AGG + chr1_1:78038830-78038849 Msa0046020:CDS 30.0%
TCACTAACCTTAATCAAAGT+AGG - chr1_1:78038840-78038859 None:intergenic 30.0%
TTAAGGTTAGTGACATGAAA+TGG + chr1_1:78038847-78038866 Msa0046020:intron 30.0%
AAAGTAAACCTTTCCTTTCT+TGG + chr1_1:78038957-78038976 Msa0046020:intron 30.0%
AAGTAAACCTTTCCTTTCTT+GGG + chr1_1:78038958-78038977 Msa0046020:intron 30.0%
!! TTTTTATTTGGTTTCGATGC+TGG + chr1_1:78038994-78039013 Msa0046020:intron 30.0%
CAAGATCATGAAAATATCAG+TGG - chr1_1:78039244-78039263 None:intergenic 30.0%
GTATGAGAAGAAATACAAAG+AGG + chr1_1:78039356-78039375 Msa0046020:CDS 30.0%
!! GAGTAAAGTGTCATACTTTT+TGG + chr1_1:78039446-78039465 Msa0046020:intron 30.0%
AGCAGTCAAAATTCAAAAGT+AGG - chr1_1:78039518-78039537 None:intergenic 30.0%
TGTGATCAATATTCCACAAA+TGG - chr1_1:78039580-78039599 None:intergenic 30.0%
TCTGAAAGTTGAAGTCAAAT+TGG - chr1_1:78039606-78039625 None:intergenic 30.0%
ATGACTTTGTTGAAATCGTT+TGG + chr1_1:78039745-78039764 Msa0046020:CDS 30.0%
GGTCATAACATAAATAACTC+CGG - chr1_1:78039953-78039972 None:intergenic 30.0%
!! TTCTATTGAAGGTGTTGAAA+AGG + chr1_1:78040179-78040198 Msa0046020:CDS 30.0%
!! TCTATTGAAGGTGTTGAAAA+GGG + chr1_1:78040180-78040199 Msa0046020:CDS 30.0%
!!! AAGCCTGATGTTATTTTGAT+TGG + chr1_1:78040237-78040256 Msa0046020:CDS 30.0%
GTTCCAATCAAAATAACATC+AGG - chr1_1:78040243-78040262 None:intergenic 30.0%
!!! GATGTTATTTTGATTGGAAC+TGG + chr1_1:78040243-78040262 Msa0046020:CDS 30.0%
!!! AGTTGTTTCTTTTGTTAGCT+GGG + chr1_1:78040329-78040348 Msa0046020:CDS 30.0%
ACAGATCTATGAAACTTCTT+TGG - chr1_1:78040571-78040590 None:intergenic 30.0%
!!! CTTTTTTAATCCAGAACTTG+TGG + chr1_1:78040607-78040626 Msa0046020:three_prime_UTR 30.0%
CAATCTATTCATCCTTATTG+TGG - chr1_1:78040695-78040714 None:intergenic 30.0%
! ATAGATAGCAAAGAAAGCAT+AGG + chr1_1:78036927-78036946 Msa0046020:five_prime_UTR 30.0%
TATAGAATATGATTGGTAGG+TGG - chr1_1:78036991-78037010 None:intergenic 30.0%
CTAATCAATCAATCACACTA+TGG + chr1_1:78037101-78037120 Msa0046020:exon 30.0%
TAAACCAAGAAGGATTCTTT+GGG - chr1_1:78037497-78037516 None:intergenic 30.0%
TTAAACCAAGAAGGATTCTT+TGG - chr1_1:78037498-78037517 None:intergenic 30.0%
AGTTGAGAAGAGAAGTAAAT+TGG - chr1_1:78037661-78037680 None:intergenic 30.0%
TGAAATTTATCTAATCCCAC+AGG - chr1_1:78037749-78037768 None:intergenic 30.0%
ATAGGTTCAAATCCAAACAA+AGG + chr1_1:78037813-78037832 Msa0046020:intron 30.0%
TAATGAATTGATATGCACAG+TGG + chr1_1:78038053-78038072 Msa0046020:intron 30.0%
CATTACAGAAGAAGCAAAAA+AGG - chr1_1:78038287-78038306 None:intergenic 30.0%
! TCCTTGTATTTTCGTTGTTT+AGG + chr1_1:78038318-78038337 Msa0046020:intron 30.0%
ACCTAAACAACGAAAATACA+AGG - chr1_1:78038322-78038341 None:intergenic 30.0%
TAAATGTCACATTACGAATC+AGG - chr1_1:78038519-78038538 None:intergenic 30.0%
! TGCTCTAGGTATGTTATATT+AGG + chr1_1:78038561-78038580 Msa0046020:intron 30.0%
AGGTATGTTATATTAGGAGA+TGG + chr1_1:78038567-78038586 Msa0046020:intron 30.0%
AGACAAACCTACTTTGATTA+AGG + chr1_1:78038830-78038849 Msa0046020:CDS 30.0%
TCACTAACCTTAATCAAAGT+AGG - chr1_1:78038840-78038859 None:intergenic 30.0%
TTAAGGTTAGTGACATGAAA+TGG + chr1_1:78038847-78038866 Msa0046020:intron 30.0%
AAAGTAAACCTTTCCTTTCT+TGG + chr1_1:78038957-78038976 Msa0046020:intron 30.0%
AAGTAAACCTTTCCTTTCTT+GGG + chr1_1:78038958-78038977 Msa0046020:intron 30.0%
!! TTTTTATTTGGTTTCGATGC+TGG + chr1_1:78038994-78039013 Msa0046020:intron 30.0%
CAAGATCATGAAAATATCAG+TGG - chr1_1:78039244-78039263 None:intergenic 30.0%
GTATGAGAAGAAATACAAAG+AGG + chr1_1:78039356-78039375 Msa0046020:CDS 30.0%
!! GAGTAAAGTGTCATACTTTT+TGG + chr1_1:78039446-78039465 Msa0046020:intron 30.0%
AGCAGTCAAAATTCAAAAGT+AGG - chr1_1:78039518-78039537 None:intergenic 30.0%
TGTGATCAATATTCCACAAA+TGG - chr1_1:78039580-78039599 None:intergenic 30.0%
TCTGAAAGTTGAAGTCAAAT+TGG - chr1_1:78039606-78039625 None:intergenic 30.0%
ATGACTTTGTTGAAATCGTT+TGG + chr1_1:78039745-78039764 Msa0046020:CDS 30.0%
GGTCATAACATAAATAACTC+CGG - chr1_1:78039953-78039972 None:intergenic 30.0%
!! TTCTATTGAAGGTGTTGAAA+AGG + chr1_1:78040179-78040198 Msa0046020:CDS 30.0%
!! TCTATTGAAGGTGTTGAAAA+GGG + chr1_1:78040180-78040199 Msa0046020:CDS 30.0%
!!! AAGCCTGATGTTATTTTGAT+TGG + chr1_1:78040237-78040256 Msa0046020:CDS 30.0%
GTTCCAATCAAAATAACATC+AGG - chr1_1:78040243-78040262 None:intergenic 30.0%
!!! GATGTTATTTTGATTGGAAC+TGG + chr1_1:78040243-78040262 Msa0046020:CDS 30.0%
!!! AGTTGTTTCTTTTGTTAGCT+GGG + chr1_1:78040329-78040348 Msa0046020:CDS 30.0%
ACAGATCTATGAAACTTCTT+TGG - chr1_1:78040571-78040590 None:intergenic 30.0%
!!! CTTTTTTAATCCAGAACTTG+TGG + chr1_1:78040607-78040626 Msa0046020:three_prime_UTR 30.0%
CAATCTATTCATCCTTATTG+TGG - chr1_1:78040695-78040714 None:intergenic 30.0%
ATTGAGAGGTAGATAAGTGA+GGG + chr1_1:78036899-78036918 Msa0046020:five_prime_UTR 35.0%
!! TTTGTTTGGTGTATAAGCTG+TGG - chr1_1:78036963-78036982 None:intergenic 35.0%
!! TAGAGTGTTAAGAGTGTTTG+GGG - chr1_1:78037024-78037043 None:intergenic 35.0%
!! GTAGAGTGTTAAGAGTGTTT+GGG - chr1_1:78037025-78037044 None:intergenic 35.0%
!! AGTAGAGTGTTAAGAGTGTT+TGG - chr1_1:78037026-78037045 None:intergenic 35.0%
ATCAATCAAGGAGAAGAAGA+AGG - chr1_1:78037075-78037094 None:intergenic 35.0%
AATTTCAGGGTTGAGGTATA+CGG - chr1_1:78037172-78037191 None:intergenic 35.0%
TGCTGTTGAGAAAGCTAATT+CGG + chr1_1:78037401-78037420 Msa0046020:CDS 35.0%
ATAACCCAAAGAATCCTTCT+TGG + chr1_1:78037490-78037509 Msa0046020:CDS 35.0%
! AAGTAAATTGGTTGGTTGGT+TGG - chr1_1:78037649-78037668 None:intergenic 35.0%
AGAGAAGTAAATTGGTTGGT+TGG - chr1_1:78037653-78037672 None:intergenic 35.0%
GAGAAGAGAAGTAAATTGGT+TGG - chr1_1:78037657-78037676 None:intergenic 35.0%
TTGAAAATCTGCAATGGAGT+TGG + chr1_1:78037785-78037804 Msa0046020:intron 35.0%
ATTGTTCCTGATAGCTTATG+TGG + chr1_1:78037946-78037965 Msa0046020:intron 35.0%
!! TGAGCTGAATTTGTTGTGTT+TGG + chr1_1:78038094-78038113 Msa0046020:intron 35.0%
!! GAGCTGAATTTGTTGTGTTT+GGG + chr1_1:78038095-78038114 Msa0046020:intron 35.0%
AAAAAAGGCTCACAGTAACA+TGG - chr1_1:78038272-78038291 None:intergenic 35.0%
ATTGGTTATCTCACGTGTAA+TGG - chr1_1:78038440-78038459 None:intergenic 35.0%
!!! TTTTGTTTTTGGTCTGCTCT+AGG + chr1_1:78038547-78038566 Msa0046020:intron 35.0%
ATTAGGAGATGGTTGTCAAA+TGG + chr1_1:78038578-78038597 Msa0046020:CDS 35.0%
! GAATGTTGATCAACGTTTTG+AGG + chr1_1:78038719-78038738 Msa0046020:CDS 35.0%
! CATGTGATTTGGGTAAAGAA+CGG + chr1_1:78038753-78038772 Msa0046020:CDS 35.0%
GAAATGGAAATTCAAGCAAG+TGG + chr1_1:78038863-78038882 Msa0046020:intron 35.0%
TGACATAATGTGACTGTTGA+GGG + chr1_1:78038932-78038951 Msa0046020:intron 35.0%
GATATAACAACACCCAAGAA+AGG - chr1_1:78038973-78038992 None:intergenic 35.0%
!! CTGTAGGAATTAGCTTTGTT+TGG - chr1_1:78039089-78039108 None:intergenic 35.0%
CTAAAGAAGTAGATGCTACA+AGG + chr1_1:78039132-78039151 Msa0046020:CDS 35.0%
! TTTTAACATCTTCTGGCACA+TGG - chr1_1:78039187-78039206 None:intergenic 35.0%
TAACCTGCTTAACATTCCTT+AGG + chr1_1:78039268-78039287 Msa0046020:intron 35.0%
TGAGAAGAAATACAAAGAGG+AGG + chr1_1:78039359-78039378 Msa0046020:CDS 35.0%
AAGTATGACACTTTACTCAC+CGG - chr1_1:78039444-78039463 None:intergenic 35.0%
TGAGTTCTATCAACCATTTG+TGG + chr1_1:78039564-78039583 Msa0046020:intron 35.0%
CGATTTCAACAAAGTCATGT+TGG - chr1_1:78039743-78039762 None:intergenic 35.0%
ATCGTTTGGAGATTTCCAAA+AGG + chr1_1:78039759-78039778 Msa0046020:CDS 35.0%
ACAAAGAAAGTTGCACAGTA+TGG - chr1_1:78039880-78039899 None:intergenic 35.0%
GTTATGACCCATGATTCAAT+TGG + chr1_1:78039964-78039983 Msa0046020:CDS 35.0%
TCCAAGTCCAATTGAATCAT+GGG - chr1_1:78039974-78039993 None:intergenic 35.0%
TCAAAACATTTGGCATTGCT+CGG - chr1_1:78040041-78040060 None:intergenic 35.0%
TTCTTTCCTTAGATCATCAG+CGG - chr1_1:78040295-78040314 None:intergenic 35.0%
!!! GAGTTGTTTCTTTTGTTAGC+TGG + chr1_1:78040328-78040347 Msa0046020:CDS 35.0%
TGATCAGTCAGATGAATACA+AGG + chr1_1:78040362-78040381 Msa0046020:CDS 35.0%
TTTGGTTGGCATAAGATTGT+TGG + chr1_1:78040441-78040460 Msa0046020:CDS 35.0%
CATAAGATTGTTGGAAGCAA+GGG + chr1_1:78040450-78040469 Msa0046020:CDS 35.0%
GGGAAAATATACAAGGAGTA+TGG + chr1_1:78040516-78040535 Msa0046020:CDS 35.0%
ATTGAGAGGTAGATAAGTGA+GGG + chr1_1:78036899-78036918 Msa0046020:five_prime_UTR 35.0%
!! TTTGTTTGGTGTATAAGCTG+TGG - chr1_1:78036963-78036982 None:intergenic 35.0%
!! TAGAGTGTTAAGAGTGTTTG+GGG - chr1_1:78037024-78037043 None:intergenic 35.0%
!! GTAGAGTGTTAAGAGTGTTT+GGG - chr1_1:78037025-78037044 None:intergenic 35.0%
!! AGTAGAGTGTTAAGAGTGTT+TGG - chr1_1:78037026-78037045 None:intergenic 35.0%
ATCAATCAAGGAGAAGAAGA+AGG - chr1_1:78037075-78037094 None:intergenic 35.0%
AATTTCAGGGTTGAGGTATA+CGG - chr1_1:78037172-78037191 None:intergenic 35.0%
TGCTGTTGAGAAAGCTAATT+CGG + chr1_1:78037401-78037420 Msa0046020:CDS 35.0%
ATAACCCAAAGAATCCTTCT+TGG + chr1_1:78037490-78037509 Msa0046020:CDS 35.0%
! AAGTAAATTGGTTGGTTGGT+TGG - chr1_1:78037649-78037668 None:intergenic 35.0%
AGAGAAGTAAATTGGTTGGT+TGG - chr1_1:78037653-78037672 None:intergenic 35.0%
GAGAAGAGAAGTAAATTGGT+TGG - chr1_1:78037657-78037676 None:intergenic 35.0%
TTGAAAATCTGCAATGGAGT+TGG + chr1_1:78037785-78037804 Msa0046020:intron 35.0%
ATTGTTCCTGATAGCTTATG+TGG + chr1_1:78037946-78037965 Msa0046020:intron 35.0%
!! TGAGCTGAATTTGTTGTGTT+TGG + chr1_1:78038094-78038113 Msa0046020:intron 35.0%
!! GAGCTGAATTTGTTGTGTTT+GGG + chr1_1:78038095-78038114 Msa0046020:intron 35.0%
AAAAAAGGCTCACAGTAACA+TGG - chr1_1:78038272-78038291 None:intergenic 35.0%
ATTGGTTATCTCACGTGTAA+TGG - chr1_1:78038440-78038459 None:intergenic 35.0%
!!! TTTTGTTTTTGGTCTGCTCT+AGG + chr1_1:78038547-78038566 Msa0046020:intron 35.0%
ATTAGGAGATGGTTGTCAAA+TGG + chr1_1:78038578-78038597 Msa0046020:CDS 35.0%
! GAATGTTGATCAACGTTTTG+AGG + chr1_1:78038719-78038738 Msa0046020:CDS 35.0%
! CATGTGATTTGGGTAAAGAA+CGG + chr1_1:78038753-78038772 Msa0046020:CDS 35.0%
GAAATGGAAATTCAAGCAAG+TGG + chr1_1:78038863-78038882 Msa0046020:intron 35.0%
TGACATAATGTGACTGTTGA+GGG + chr1_1:78038932-78038951 Msa0046020:intron 35.0%
GATATAACAACACCCAAGAA+AGG - chr1_1:78038973-78038992 None:intergenic 35.0%
!! CTGTAGGAATTAGCTTTGTT+TGG - chr1_1:78039089-78039108 None:intergenic 35.0%
CTAAAGAAGTAGATGCTACA+AGG + chr1_1:78039132-78039151 Msa0046020:CDS 35.0%
! TTTTAACATCTTCTGGCACA+TGG - chr1_1:78039187-78039206 None:intergenic 35.0%
TAACCTGCTTAACATTCCTT+AGG + chr1_1:78039268-78039287 Msa0046020:intron 35.0%
TGAGAAGAAATACAAAGAGG+AGG + chr1_1:78039359-78039378 Msa0046020:CDS 35.0%
AAGTATGACACTTTACTCAC+CGG - chr1_1:78039444-78039463 None:intergenic 35.0%
TGAGTTCTATCAACCATTTG+TGG + chr1_1:78039564-78039583 Msa0046020:intron 35.0%
CGATTTCAACAAAGTCATGT+TGG - chr1_1:78039743-78039762 None:intergenic 35.0%
ATCGTTTGGAGATTTCCAAA+AGG + chr1_1:78039759-78039778 Msa0046020:CDS 35.0%
ACAAAGAAAGTTGCACAGTA+TGG - chr1_1:78039880-78039899 None:intergenic 35.0%
GTTATGACCCATGATTCAAT+TGG + chr1_1:78039964-78039983 Msa0046020:CDS 35.0%
TCCAAGTCCAATTGAATCAT+GGG - chr1_1:78039974-78039993 None:intergenic 35.0%
TCAAAACATTTGGCATTGCT+CGG - chr1_1:78040041-78040060 None:intergenic 35.0%
TTCTTTCCTTAGATCATCAG+CGG - chr1_1:78040295-78040314 None:intergenic 35.0%
!!! GAGTTGTTTCTTTTGTTAGC+TGG + chr1_1:78040328-78040347 Msa0046020:CDS 35.0%
TGATCAGTCAGATGAATACA+AGG + chr1_1:78040362-78040381 Msa0046020:CDS 35.0%
TTTGGTTGGCATAAGATTGT+TGG + chr1_1:78040441-78040460 Msa0046020:CDS 35.0%
CATAAGATTGTTGGAAGCAA+GGG + chr1_1:78040450-78040469 Msa0046020:CDS 35.0%
GGGAAAATATACAAGGAGTA+TGG + chr1_1:78040516-78040535 Msa0046020:CDS 35.0%
!! AGATGATGAGATGGATTGAG+AGG + chr1_1:78036885-78036904 Msa0046020:five_prime_UTR 40.0%
GATTGAGAGGTAGATAAGTG+AGG + chr1_1:78036898-78036917 Msa0046020:five_prime_UTR 40.0%
! GTGATGATGCACGAATTTCA+GGG - chr1_1:78037185-78037204 None:intergenic 40.0%
! AGTGATGATGCACGAATTTC+AGG - chr1_1:78037186-78037205 None:intergenic 40.0%
TTTCTCAACGAGAGAAGCTT+CGG - chr1_1:78037349-78037368 None:intergenic 40.0%
GCTGTTGAGAAAGCTAATTC+GGG + chr1_1:78037402-78037421 Msa0046020:CDS 40.0%
TCGTATAGAATGTGACCCAT+TGG - chr1_1:78037456-78037475 None:intergenic 40.0%
CGATCACGATTAAACCAAGA+AGG - chr1_1:78037507-78037526 None:intergenic 40.0%
!!! TTTGTTTTGTCTGCTGGACA+TGG + chr1_1:78037528-78037547 Msa0046020:CDS 40.0%
TATGCTCTTCTTCATCTTGC+TGG + chr1_1:78037564-78037583 Msa0046020:CDS 40.0%
! ACTTTTAAACTTGTGGCCTG+TGG + chr1_1:78037730-78037749 Msa0046020:intron 40.0%
! CTTTTAAACTTGTGGCCTGT+GGG + chr1_1:78037731-78037750 Msa0046020:intron 40.0%
AAAATCTGCAATGGAGTTGG+AGG + chr1_1:78037788-78037807 Msa0046020:intron 40.0%
TTTCTGCCACATAAGCTATC+AGG - chr1_1:78037955-78037974 None:intergenic 40.0%
ACTTGAAGCAGTTTCGACAA+TGG + chr1_1:78038141-78038160 Msa0046020:CDS 40.0%
CTTGAAGCAGTTTCGACAAT+GGG + chr1_1:78038142-78038161 Msa0046020:CDS 40.0%
TTGAAGCAGTTTCGACAATG+GGG + chr1_1:78038143-78038162 Msa0046020:CDS 40.0%
TCCATATGTCTCGAAGTTCT+CGG - chr1_1:78038189-78038208 None:intergenic 40.0%
TATGGAATTGAAGTCACCAC+AGG + chr1_1:78038203-78038222 Msa0046020:CDS 40.0%
! TTTTCGTTGTTTAGGTCCTC+TGG + chr1_1:78038326-78038345 Msa0046020:intron 40.0%
TTTCGTTGTTTAGGTCCTCT+GGG + chr1_1:78038327-78038346 Msa0046020:intron 40.0%
! TATTGCCAATGGTGTTGGAT+TGG + chr1_1:78038356-78038375 Msa0046020:CDS 40.0%
ACTTGGATGGCATGTGATTT+GGG + chr1_1:78038743-78038762 Msa0046020:CDS 40.0%
TGGGTAAAGAACGGAAATAC+TGG + chr1_1:78038762-78038781 Msa0046020:CDS 40.0%
TGAAATTCGTGCAGCCATTA+AGG + chr1_1:78038791-78038810 Msa0046020:CDS 40.0%
GTGACATAATGTGACTGTTG+AGG + chr1_1:78038931-78038950 Msa0046020:intron 40.0%
AACAACACCCAAGAAAGGAA+AGG - chr1_1:78038968-78038987 None:intergenic 40.0%
GTTACCACTACCATTGGATT+TGG + chr1_1:78039059-78039078 Msa0046020:CDS 40.0%
AGAACCAAATCCAATGGTAG+TGG - chr1_1:78039066-78039085 None:intergenic 40.0%
GTTTGGAGAACCAAATCCAA+TGG - chr1_1:78039072-78039091 None:intergenic 40.0%
GCTAATTCCTACAGTGTTCA+CGG + chr1_1:78039095-78039114 Msa0046020:CDS 40.0%
ATGCCTAAGGAATGTTAAGC+AGG - chr1_1:78039274-78039293 None:intergenic 40.0%
GCTTAACATTCCTTAGGCAT+TGG + chr1_1:78039274-78039293 Msa0046020:intron 40.0%
ATCGTGAATTACCTGCTGAT+TGG + chr1_1:78039406-78039425 Msa0046020:CDS 40.0%
! TCGTGAATTACCTGCTGATT+GGG + chr1_1:78039407-78039426 Msa0046020:CDS 40.0%
CAACTTTCAGACTTACACTC+CGG + chr1_1:78039615-78039634 Msa0046020:intron 40.0%
ATTTCTTGTAGCATCAGCAG+GGG - chr1_1:78039644-78039663 None:intergenic 40.0%
GATTTCTTGTAGCATCAGCA+GGG - chr1_1:78039645-78039664 None:intergenic 40.0%
AGATTTCTTGTAGCATCAGC+AGG - chr1_1:78039646-78039665 None:intergenic 40.0%
ACAGCAAAATCTAAATGCCC+TGG + chr1_1:78039669-78039688 Msa0046020:CDS 40.0%
AATAAGACCAGGAAGAACCT+TGG - chr1_1:78039695-78039714 None:intergenic 40.0%
!! AAGGTTCTTCCTGGTCTTAT+TGG + chr1_1:78039694-78039713 Msa0046020:CDS 40.0%
CAACAAAGTCATGTTGGAAG+AGG - chr1_1:78039737-78039756 None:intergenic 40.0%
!! CAATGTTCGATTTGGTGTCA+GGG + chr1_1:78039798-78039817 Msa0046020:CDS 40.0%
ACACAAGGCAGAAATCCTTA+TGG - chr1_1:78039926-78039945 None:intergenic 40.0%
ACCCATGATTCAATTGGACT+TGG + chr1_1:78039970-78039989 Msa0046020:CDS 40.0%
CTCCAAGTCCAATTGAATCA+TGG - chr1_1:78039975-78039994 None:intergenic 40.0%
TGATTCAATTGGACTTGGAG+AGG + chr1_1:78039975-78039994 Msa0046020:CDS 40.0%
! GGACGAAGCATCAAAACATT+TGG - chr1_1:78040051-78040070 None:intergenic 40.0%
ACACCTTCAATAGAAGTTCC+CGG - chr1_1:78040174-78040193 None:intergenic 40.0%
!! ATTGAAGGTGTTGAAAAGGG+TGG + chr1_1:78040183-78040202 Msa0046020:CDS 40.0%
ACCATTTCAGACAACTCATC+AGG + chr1_1:78040210-78040229 Msa0046020:CDS 40.0%
ACCTGATGAGTTGTCTGAAA+TGG - chr1_1:78040214-78040233 None:intergenic 40.0%
GCTGATGATCTAAGGAAAGA+AGG + chr1_1:78040294-78040313 Msa0046020:CDS 40.0%
GCATAAGATTGTTGGAAGCA+AGG + chr1_1:78040449-78040468 Msa0046020:CDS 40.0%
!! ACCATTGGCATTGATCGATT+TGG + chr1_1:78040477-78040496 Msa0046020:CDS 40.0%
TCCAAATCGATCAATGCCAA+TGG - chr1_1:78040481-78040500 None:intergenic 40.0%
TCCAGCAGGGAAAATATACA+AGG + chr1_1:78040509-78040528 Msa0046020:CDS 40.0%
! TCCTTGTATATTTTCCCTGC+TGG - chr1_1:78040513-78040532 None:intergenic 40.0%
AGCAGAAATAACAGCTTCCT+TGG - chr1_1:78040547-78040566 None:intergenic 40.0%
GAAGTTTCATAGATCTGTCG+AGG + chr1_1:78040573-78040592 Msa0046020:exon 40.0%
CTCTAGCATGTGATTCTCAA+AGG + chr1_1:78040715-78040734 Msa0046020:three_prime_UTR 40.0%
!! AGATGATGAGATGGATTGAG+AGG + chr1_1:78036885-78036904 Msa0046020:five_prime_UTR 40.0%
GATTGAGAGGTAGATAAGTG+AGG + chr1_1:78036898-78036917 Msa0046020:five_prime_UTR 40.0%
! GTGATGATGCACGAATTTCA+GGG - chr1_1:78037185-78037204 None:intergenic 40.0%
! AGTGATGATGCACGAATTTC+AGG - chr1_1:78037186-78037205 None:intergenic 40.0%
TTTCTCAACGAGAGAAGCTT+CGG - chr1_1:78037349-78037368 None:intergenic 40.0%
GCTGTTGAGAAAGCTAATTC+GGG + chr1_1:78037402-78037421 Msa0046020:CDS 40.0%
TCGTATAGAATGTGACCCAT+TGG - chr1_1:78037456-78037475 None:intergenic 40.0%
CGATCACGATTAAACCAAGA+AGG - chr1_1:78037507-78037526 None:intergenic 40.0%
!!! TTTGTTTTGTCTGCTGGACA+TGG + chr1_1:78037528-78037547 Msa0046020:CDS 40.0%
TATGCTCTTCTTCATCTTGC+TGG + chr1_1:78037564-78037583 Msa0046020:CDS 40.0%
! ACTTTTAAACTTGTGGCCTG+TGG + chr1_1:78037730-78037749 Msa0046020:intron 40.0%
! CTTTTAAACTTGTGGCCTGT+GGG + chr1_1:78037731-78037750 Msa0046020:intron 40.0%
AAAATCTGCAATGGAGTTGG+AGG + chr1_1:78037788-78037807 Msa0046020:intron 40.0%
TTTCTGCCACATAAGCTATC+AGG - chr1_1:78037955-78037974 None:intergenic 40.0%
ACTTGAAGCAGTTTCGACAA+TGG + chr1_1:78038141-78038160 Msa0046020:CDS 40.0%
CTTGAAGCAGTTTCGACAAT+GGG + chr1_1:78038142-78038161 Msa0046020:CDS 40.0%
TTGAAGCAGTTTCGACAATG+GGG + chr1_1:78038143-78038162 Msa0046020:CDS 40.0%
TCCATATGTCTCGAAGTTCT+CGG - chr1_1:78038189-78038208 None:intergenic 40.0%
TATGGAATTGAAGTCACCAC+AGG + chr1_1:78038203-78038222 Msa0046020:CDS 40.0%
! TTTTCGTTGTTTAGGTCCTC+TGG + chr1_1:78038326-78038345 Msa0046020:intron 40.0%
TTTCGTTGTTTAGGTCCTCT+GGG + chr1_1:78038327-78038346 Msa0046020:intron 40.0%
! TATTGCCAATGGTGTTGGAT+TGG + chr1_1:78038356-78038375 Msa0046020:CDS 40.0%
ACTTGGATGGCATGTGATTT+GGG + chr1_1:78038743-78038762 Msa0046020:CDS 40.0%
TGGGTAAAGAACGGAAATAC+TGG + chr1_1:78038762-78038781 Msa0046020:CDS 40.0%
TGAAATTCGTGCAGCCATTA+AGG + chr1_1:78038791-78038810 Msa0046020:CDS 40.0%
GTGACATAATGTGACTGTTG+AGG + chr1_1:78038931-78038950 Msa0046020:intron 40.0%
AACAACACCCAAGAAAGGAA+AGG - chr1_1:78038968-78038987 None:intergenic 40.0%
GTTACCACTACCATTGGATT+TGG + chr1_1:78039059-78039078 Msa0046020:CDS 40.0%
AGAACCAAATCCAATGGTAG+TGG - chr1_1:78039066-78039085 None:intergenic 40.0%
GTTTGGAGAACCAAATCCAA+TGG - chr1_1:78039072-78039091 None:intergenic 40.0%
GCTAATTCCTACAGTGTTCA+CGG + chr1_1:78039095-78039114 Msa0046020:CDS 40.0%
ATGCCTAAGGAATGTTAAGC+AGG - chr1_1:78039274-78039293 None:intergenic 40.0%
GCTTAACATTCCTTAGGCAT+TGG + chr1_1:78039274-78039293 Msa0046020:intron 40.0%
ATCGTGAATTACCTGCTGAT+TGG + chr1_1:78039406-78039425 Msa0046020:CDS 40.0%
! TCGTGAATTACCTGCTGATT+GGG + chr1_1:78039407-78039426 Msa0046020:CDS 40.0%
CAACTTTCAGACTTACACTC+CGG + chr1_1:78039615-78039634 Msa0046020:intron 40.0%
ATTTCTTGTAGCATCAGCAG+GGG - chr1_1:78039644-78039663 None:intergenic 40.0%
GATTTCTTGTAGCATCAGCA+GGG - chr1_1:78039645-78039664 None:intergenic 40.0%
AGATTTCTTGTAGCATCAGC+AGG - chr1_1:78039646-78039665 None:intergenic 40.0%
ACAGCAAAATCTAAATGCCC+TGG + chr1_1:78039669-78039688 Msa0046020:CDS 40.0%
AATAAGACCAGGAAGAACCT+TGG - chr1_1:78039695-78039714 None:intergenic 40.0%
!! AAGGTTCTTCCTGGTCTTAT+TGG + chr1_1:78039694-78039713 Msa0046020:CDS 40.0%
CAACAAAGTCATGTTGGAAG+AGG - chr1_1:78039737-78039756 None:intergenic 40.0%
!! CAATGTTCGATTTGGTGTCA+GGG + chr1_1:78039798-78039817 Msa0046020:CDS 40.0%
ACACAAGGCAGAAATCCTTA+TGG - chr1_1:78039926-78039945 None:intergenic 40.0%
ACCCATGATTCAATTGGACT+TGG + chr1_1:78039970-78039989 Msa0046020:CDS 40.0%
CTCCAAGTCCAATTGAATCA+TGG - chr1_1:78039975-78039994 None:intergenic 40.0%
TGATTCAATTGGACTTGGAG+AGG + chr1_1:78039975-78039994 Msa0046020:CDS 40.0%
! GGACGAAGCATCAAAACATT+TGG - chr1_1:78040051-78040070 None:intergenic 40.0%
ACACCTTCAATAGAAGTTCC+CGG - chr1_1:78040174-78040193 None:intergenic 40.0%
!! ATTGAAGGTGTTGAAAAGGG+TGG + chr1_1:78040183-78040202 Msa0046020:CDS 40.0%
ACCATTTCAGACAACTCATC+AGG + chr1_1:78040210-78040229 Msa0046020:CDS 40.0%
ACCTGATGAGTTGTCTGAAA+TGG - chr1_1:78040214-78040233 None:intergenic 40.0%
GCTGATGATCTAAGGAAAGA+AGG + chr1_1:78040294-78040313 Msa0046020:CDS 40.0%
GCATAAGATTGTTGGAAGCA+AGG + chr1_1:78040449-78040468 Msa0046020:CDS 40.0%
!! ACCATTGGCATTGATCGATT+TGG + chr1_1:78040477-78040496 Msa0046020:CDS 40.0%
TCCAAATCGATCAATGCCAA+TGG - chr1_1:78040481-78040500 None:intergenic 40.0%
TCCAGCAGGGAAAATATACA+AGG + chr1_1:78040509-78040528 Msa0046020:CDS 40.0%
! TCCTTGTATATTTTCCCTGC+TGG - chr1_1:78040513-78040532 None:intergenic 40.0%
AGCAGAAATAACAGCTTCCT+TGG - chr1_1:78040547-78040566 None:intergenic 40.0%
GAAGTTTCATAGATCTGTCG+AGG + chr1_1:78040573-78040592 Msa0046020:exon 40.0%
CTCTAGCATGTGATTCTCAA+AGG + chr1_1:78040715-78040734 Msa0046020:three_prime_UTR 40.0%
! GGTAGGTGGTAGTGTTTGTT+TGG - chr1_1:78036977-78036996 None:intergenic 45.0%
ATGCACGAATTTCAGGGTTG+AGG - chr1_1:78037179-78037198 None:intergenic 45.0%
AAGAGGAGGATTTGAGTGCA+GGG - chr1_1:78037233-78037252 None:intergenic 45.0%
TTTGTCGAGTGTTTCGACAG+CGG - chr1_1:78037322-78037341 None:intergenic 45.0%
!! TCTCAACAGCATCGATAGCA+AGG - chr1_1:78037392-78037411 None:intergenic 45.0%
!!! GATCGCTTTGTTTTGTCTGC+TGG + chr1_1:78037522-78037541 Msa0046020:CDS 45.0%
! TGCTGGTTATGACAGTGTCA+AGG + chr1_1:78037581-78037600 Msa0046020:CDS 45.0%
CCATATGTCTCGAAGTTCTC+GGG - chr1_1:78038188-78038207 None:intergenic 45.0%
AAGTGCCAATCCAACACCAT+TGG - chr1_1:78038364-78038383 None:intergenic 45.0%
TGGTCAACAATCTCACTGTC+AGG - chr1_1:78038420-78038439 None:intergenic 45.0%
GGAGATGGTTGTCAAATGGA+AGG + chr1_1:78038582-78038601 Msa0046020:CDS 45.0%
AATGAAGCGTGTTCACTTGC+CGG + chr1_1:78038612-78038631 Msa0046020:CDS 45.0%
!!! GATCAACGTTTTGAGGCACT+TGG + chr1_1:78038726-78038745 Msa0046020:CDS 45.0%
!!! AACGTTTTGAGGCACTTGGA+TGG + chr1_1:78038730-78038749 Msa0046020:CDS 45.0%
CACTTGGATGGCATGTGATT+TGG + chr1_1:78038742-78038761 Msa0046020:CDS 45.0%
TGCAGCCATTAAGGAAGCAA+AGG + chr1_1:78038800-78038819 Msa0046020:CDS 45.0%
GACAGCCTTTGCTTCCTTAA+TGG - chr1_1:78038808-78038827 None:intergenic 45.0%
TGACAGGTTACCACTACCAT+TGG + chr1_1:78039053-78039072 Msa0046020:intron 45.0%
GATGCTACAAGGCAGAATCT+TGG + chr1_1:78039143-78039162 Msa0046020:CDS 45.0%
CTACAAGGCAGAATCTTGGA+TGG + chr1_1:78039147-78039166 Msa0046020:CDS 45.0%
ACATCTTCTGGCACATGGAA+AGG - chr1_1:78039182-78039201 None:intergenic 45.0%
!! TGATTGGGAGAAAGCACTTC+CGG + chr1_1:78039422-78039441 Msa0046020:CDS 45.0%
AAATCTAAATGCCCTGGCCA+AGG + chr1_1:78039675-78039694 Msa0046020:CDS 45.0%
!! GTTCTTCCTGGTCTTATTGG+TGG + chr1_1:78039697-78039716 Msa0046020:CDS 45.0%
AATCGAACATTGCGCTCTTC+TGG - chr1_1:78039790-78039809 None:intergenic 45.0%
! GAAGAGCGCAATGTTCGATT+TGG + chr1_1:78039790-78039809 Msa0046020:CDS 45.0%
!! GCAATGTTCGATTTGGTGTC+AGG + chr1_1:78039797-78039816 Msa0046020:CDS 45.0%
TGGTATTGCTCTTCATAGCC+CGG + chr1_1:78039846-78039865 Msa0046020:CDS 45.0%
CACAGTATGGAATGAATCCC+GGG - chr1_1:78039867-78039886 None:intergenic 45.0%
GCACAGTATGGAATGAATCC+CGG - chr1_1:78039868-78039887 None:intergenic 45.0%
TATGGCAGCTCTCATGTAGT+CGG - chr1_1:78039908-78039927 None:intergenic 45.0%
ACTACATGAGAGCTGCCATA+AGG + chr1_1:78039908-78039927 Msa0046020:CDS 45.0%
ATTTCTGCCTTGTGTGAAGC+CGG + chr1_1:78039931-78039950 Msa0046020:CDS 45.0%
AATAACTCCGGCTTCACACA+AGG - chr1_1:78039941-78039960 None:intergenic 45.0%
TCAATTGGACTTGGAGAGGA+TGG + chr1_1:78039979-78039998 Msa0046020:CDS 45.0%
! TGCTCTATTGGCTGATGAGT+TGG - chr1_1:78040006-78040025 None:intergenic 45.0%
GCAGTTTCATTACCATCAGC+TGG - chr1_1:78040072-78040091 None:intergenic 45.0%
! GCTGATGGTAATGAAACTGC+TGG + chr1_1:78040072-78040091 Msa0046020:CDS 45.0%
CAAGAATTGAGGGTCTCTTC+TGG - chr1_1:78040122-78040141 None:intergenic 45.0%
CGAGAAAGGGCAAGAATTGA+GGG - chr1_1:78040132-78040151 None:intergenic 45.0%
CCTCAATTCTTGCCCTTTCT+CGG + chr1_1:78040130-78040149 Msa0046020:CDS 45.0%
! AGGCAACTTTTGCCGAGAAA+GGG - chr1_1:78040145-78040164 None:intergenic 45.0%
! TAGGCAACTTTTGCCGAGAA+AGG - chr1_1:78040146-78040165 None:intergenic 45.0%
GCAAAAGTTGCCTAACCTTC+CGG + chr1_1:78040152-78040171 Msa0046020:CDS 45.0%
CAAAAGTTGCCTAACCTTCC+GGG + chr1_1:78040153-78040172 Msa0046020:CDS 45.0%
ATAGAAGTTCCCGGAAGGTT+AGG - chr1_1:78040165-78040184 None:intergenic 45.0%
CTTCAATAGAAGTTCCCGGA+AGG - chr1_1:78040170-78040189 None:intergenic 45.0%
CTTCCGGGAACTTCTATTGA+AGG + chr1_1:78040168-78040187 Msa0046020:CDS 45.0%
!! GATTGGAACTGGTTCTGAGT+TGG + chr1_1:78040254-78040273 Msa0046020:CDS 45.0%
TTTCCTTAGATCATCAGCGG+CGG - chr1_1:78040292-78040311 None:intergenic 45.0%
ATTGAGGCGGGATCAACATT+TGG + chr1_1:78040423-78040442 Msa0046020:CDS 45.0%
GGAAGCAAGGGAAAAACCAT+TGG + chr1_1:78040462-78040481 Msa0046020:CDS 45.0%
! CAAGGAGTATGGCATAACCA+AGG + chr1_1:78040527-78040546 Msa0046020:CDS 45.0%
CCAATGAAACCCACAAGTTC+TGG - chr1_1:78040620-78040639 None:intergenic 45.0%
CCAGAACTTGTGGGTTTCAT+TGG + chr1_1:78040617-78040636 Msa0046020:three_prime_UTR 45.0%
GAACTTGTGGGTTTCATTGG+TGG + chr1_1:78040620-78040639 Msa0046020:three_prime_UTR 45.0%
TCAGAGCACATCTAGAGAAG+TGG - chr1_1:78040856-78040875 None:intergenic 45.0%
! GGTAGGTGGTAGTGTTTGTT+TGG - chr1_1:78036977-78036996 None:intergenic 45.0%
ATGCACGAATTTCAGGGTTG+AGG - chr1_1:78037179-78037198 None:intergenic 45.0%
AAGAGGAGGATTTGAGTGCA+GGG - chr1_1:78037233-78037252 None:intergenic 45.0%
TTTGTCGAGTGTTTCGACAG+CGG - chr1_1:78037322-78037341 None:intergenic 45.0%
!! TCTCAACAGCATCGATAGCA+AGG - chr1_1:78037392-78037411 None:intergenic 45.0%
!!! GATCGCTTTGTTTTGTCTGC+TGG + chr1_1:78037522-78037541 Msa0046020:CDS 45.0%
! TGCTGGTTATGACAGTGTCA+AGG + chr1_1:78037581-78037600 Msa0046020:CDS 45.0%
CCATATGTCTCGAAGTTCTC+GGG - chr1_1:78038188-78038207 None:intergenic 45.0%
AAGTGCCAATCCAACACCAT+TGG - chr1_1:78038364-78038383 None:intergenic 45.0%
TGGTCAACAATCTCACTGTC+AGG - chr1_1:78038420-78038439 None:intergenic 45.0%
GGAGATGGTTGTCAAATGGA+AGG + chr1_1:78038582-78038601 Msa0046020:CDS 45.0%
AATGAAGCGTGTTCACTTGC+CGG + chr1_1:78038612-78038631 Msa0046020:CDS 45.0%
!!! GATCAACGTTTTGAGGCACT+TGG + chr1_1:78038726-78038745 Msa0046020:CDS 45.0%
!!! AACGTTTTGAGGCACTTGGA+TGG + chr1_1:78038730-78038749 Msa0046020:CDS 45.0%
CACTTGGATGGCATGTGATT+TGG + chr1_1:78038742-78038761 Msa0046020:CDS 45.0%
TGCAGCCATTAAGGAAGCAA+AGG + chr1_1:78038800-78038819 Msa0046020:CDS 45.0%
GACAGCCTTTGCTTCCTTAA+TGG - chr1_1:78038808-78038827 None:intergenic 45.0%
TGACAGGTTACCACTACCAT+TGG + chr1_1:78039053-78039072 Msa0046020:intron 45.0%
GATGCTACAAGGCAGAATCT+TGG + chr1_1:78039143-78039162 Msa0046020:CDS 45.0%
CTACAAGGCAGAATCTTGGA+TGG + chr1_1:78039147-78039166 Msa0046020:CDS 45.0%
ACATCTTCTGGCACATGGAA+AGG - chr1_1:78039182-78039201 None:intergenic 45.0%
!! TGATTGGGAGAAAGCACTTC+CGG + chr1_1:78039422-78039441 Msa0046020:CDS 45.0%
AAATCTAAATGCCCTGGCCA+AGG + chr1_1:78039675-78039694 Msa0046020:CDS 45.0%
!! GTTCTTCCTGGTCTTATTGG+TGG + chr1_1:78039697-78039716 Msa0046020:CDS 45.0%
AATCGAACATTGCGCTCTTC+TGG - chr1_1:78039790-78039809 None:intergenic 45.0%
! GAAGAGCGCAATGTTCGATT+TGG + chr1_1:78039790-78039809 Msa0046020:CDS 45.0%
!! GCAATGTTCGATTTGGTGTC+AGG + chr1_1:78039797-78039816 Msa0046020:CDS 45.0%
TGGTATTGCTCTTCATAGCC+CGG + chr1_1:78039846-78039865 Msa0046020:CDS 45.0%
CACAGTATGGAATGAATCCC+GGG - chr1_1:78039867-78039886 None:intergenic 45.0%
GCACAGTATGGAATGAATCC+CGG - chr1_1:78039868-78039887 None:intergenic 45.0%
TATGGCAGCTCTCATGTAGT+CGG - chr1_1:78039908-78039927 None:intergenic 45.0%
ACTACATGAGAGCTGCCATA+AGG + chr1_1:78039908-78039927 Msa0046020:CDS 45.0%
ATTTCTGCCTTGTGTGAAGC+CGG + chr1_1:78039931-78039950 Msa0046020:CDS 45.0%
AATAACTCCGGCTTCACACA+AGG - chr1_1:78039941-78039960 None:intergenic 45.0%
TCAATTGGACTTGGAGAGGA+TGG + chr1_1:78039979-78039998 Msa0046020:CDS 45.0%
! TGCTCTATTGGCTGATGAGT+TGG - chr1_1:78040006-78040025 None:intergenic 45.0%
GCAGTTTCATTACCATCAGC+TGG - chr1_1:78040072-78040091 None:intergenic 45.0%
! GCTGATGGTAATGAAACTGC+TGG + chr1_1:78040072-78040091 Msa0046020:CDS 45.0%
CAAGAATTGAGGGTCTCTTC+TGG - chr1_1:78040122-78040141 None:intergenic 45.0%
CGAGAAAGGGCAAGAATTGA+GGG - chr1_1:78040132-78040151 None:intergenic 45.0%
CCTCAATTCTTGCCCTTTCT+CGG + chr1_1:78040130-78040149 Msa0046020:CDS 45.0%
! AGGCAACTTTTGCCGAGAAA+GGG - chr1_1:78040145-78040164 None:intergenic 45.0%
! TAGGCAACTTTTGCCGAGAA+AGG - chr1_1:78040146-78040165 None:intergenic 45.0%
GCAAAAGTTGCCTAACCTTC+CGG + chr1_1:78040152-78040171 Msa0046020:CDS 45.0%
CAAAAGTTGCCTAACCTTCC+GGG + chr1_1:78040153-78040172 Msa0046020:CDS 45.0%
ATAGAAGTTCCCGGAAGGTT+AGG - chr1_1:78040165-78040184 None:intergenic 45.0%
CTTCAATAGAAGTTCCCGGA+AGG - chr1_1:78040170-78040189 None:intergenic 45.0%
CTTCCGGGAACTTCTATTGA+AGG + chr1_1:78040168-78040187 Msa0046020:CDS 45.0%
!! GATTGGAACTGGTTCTGAGT+TGG + chr1_1:78040254-78040273 Msa0046020:CDS 45.0%
TTTCCTTAGATCATCAGCGG+CGG - chr1_1:78040292-78040311 None:intergenic 45.0%
ATTGAGGCGGGATCAACATT+TGG + chr1_1:78040423-78040442 Msa0046020:CDS 45.0%
GGAAGCAAGGGAAAAACCAT+TGG + chr1_1:78040462-78040481 Msa0046020:CDS 45.0%
! CAAGGAGTATGGCATAACCA+AGG + chr1_1:78040527-78040546 Msa0046020:CDS 45.0%
CCAATGAAACCCACAAGTTC+TGG - chr1_1:78040620-78040639 None:intergenic 45.0%
CCAGAACTTGTGGGTTTCAT+TGG + chr1_1:78040617-78040636 Msa0046020:three_prime_UTR 45.0%
GAACTTGTGGGTTTCATTGG+TGG + chr1_1:78040620-78040639 Msa0046020:three_prime_UTR 45.0%
TCAGAGCACATCTAGAGAAG+TGG - chr1_1:78040856-78040875 None:intergenic 45.0%
GAGAGGTAGATAAGTGAGGG+AGG + chr1_1:78036902-78036921 Msa0046020:five_prime_UTR 50.0%
TTTGAGTGCAGGGAAGGAGA+GGG - chr1_1:78037223-78037242 None:intergenic 50.0%
ATTTGAGTGCAGGGAAGGAG+AGG - chr1_1:78037224-78037243 None:intergenic 50.0%
GAAGAGGAGGATTTGAGTGC+AGG - chr1_1:78037234-78037253 None:intergenic 50.0%
!! TGCTGGTTTGCATGAAGAGG+AGG - chr1_1:78037247-78037266 None:intergenic 50.0%
!! TGCTGCTGGTTTGCATGAAG+AGG - chr1_1:78037250-78037269 None:intergenic 50.0%
GAAAGCTAATTCGGGTCACC+CGG + chr1_1:78037410-78037429 Msa0046020:CDS 50.0%
AAAGCTAATTCGGGTCACCC+GGG + chr1_1:78037411-78037430 Msa0046020:CDS 50.0%
GCAATGGAGTTGGAGGTCAT+AGG + chr1_1:78037795-78037814 Msa0046020:intron 50.0%
CAATGGGGAAGCAAAACTCC+TGG + chr1_1:78038158-78038177 Msa0046020:CDS 50.0%
CCCGAGAACTTCGAGACATA+TGG + chr1_1:78038185-78038204 Msa0046020:CDS 50.0%
TTGTTTAGGTCCTCTGGGTC+AGG + chr1_1:78038332-78038351 Msa0046020:intron 50.0%
TGTTTAGGTCCTCTGGGTCA+GGG + chr1_1:78038333-78038352 Msa0046020:intron 50.0%
!! CAGGGTATTGCCAATGGTGT+TGG + chr1_1:78038351-78038370 Msa0046020:CDS 50.0%
GTGTTCACTTGCCGGACATT+GGG + chr1_1:78038620-78038639 Msa0046020:CDS 50.0%
TGTTCACTTGCCGGACATTG+GGG + chr1_1:78038621-78038640 Msa0046020:CDS 50.0%
CTTTCCAAGACCCCAATGTC+CGG - chr1_1:78038634-78038653 None:intergenic 50.0%
TGGTTTCGATGCTGGTCACA+TGG + chr1_1:78039002-78039021 Msa0046020:intron 50.0%
AGTGTTCACGGAGCTGCATT+GGG + chr1_1:78039107-78039126 Msa0046020:CDS 50.0%
GGCACATGGAAAGGCTCATA+TGG - chr1_1:78039173-78039192 None:intergenic 50.0%
TATGGCGACTCCAATGCCTA+AGG - chr1_1:78039287-78039306 None:intergenic 50.0%
AGTGCTTTCTCCCAATCAGC+AGG - chr1_1:78039420-78039439 None:intergenic 50.0%
!!! GCTCTTCTGGAGTAGCCTTT+TGG - chr1_1:78039777-78039796 None:intergenic 50.0%
GCAATGGGAGCAATCTGCAA+TGG + chr1_1:78039826-78039845 Msa0046020:CDS 50.0%
GGTATTGCTCTTCATAGCCC+GGG + chr1_1:78039847-78039866 Msa0046020:CDS 50.0%
! TCATCAGCCAATAGAGCACC+TGG + chr1_1:78040008-78040027 Msa0046020:CDS 50.0%
AAGCTTGCCAGGTGCTCTAT+TGG - chr1_1:78040018-78040037 None:intergenic 50.0%
TTGATGCTTCGTCCAGCTGA+TGG + chr1_1:78040057-78040076 Msa0046020:CDS 50.0%
! GGGTCTCTTCTGGTTAAGCA+CGG - chr1_1:78040112-78040131 None:intergenic 50.0%
CCGAGAAAGGGCAAGAATTG+AGG - chr1_1:78040133-78040152 None:intergenic 50.0%
CTCTAGCTGTCACAGAAGCA+GGG - chr1_1:78040398-78040417 None:intergenic 50.0%
ACTCTAGCTGTCACAGAAGC+AGG - chr1_1:78040399-78040418 None:intergenic 50.0%
GACAGCTAGAGTCAGCATTG+AGG + chr1_1:78040407-78040426 Msa0046020:CDS 50.0%
! AGCTAGAGTCAGCATTGAGG+CGG + chr1_1:78040410-78040429 Msa0046020:CDS 50.0%
AGGCGGGATCAACATTTGGT+TGG + chr1_1:78040427-78040446 Msa0046020:CDS 50.0%
TCTCTAGATGTGCTCTGACG+TGG + chr1_1:78040858-78040877 Msa0046020:three_prime_UTR 50.0%
GAGAGGTAGATAAGTGAGGG+AGG + chr1_1:78036902-78036921 Msa0046020:five_prime_UTR 50.0%
TTTGAGTGCAGGGAAGGAGA+GGG - chr1_1:78037223-78037242 None:intergenic 50.0%
ATTTGAGTGCAGGGAAGGAG+AGG - chr1_1:78037224-78037243 None:intergenic 50.0%
GAAGAGGAGGATTTGAGTGC+AGG - chr1_1:78037234-78037253 None:intergenic 50.0%
!! TGCTGGTTTGCATGAAGAGG+AGG - chr1_1:78037247-78037266 None:intergenic 50.0%
!! TGCTGCTGGTTTGCATGAAG+AGG - chr1_1:78037250-78037269 None:intergenic 50.0%
GAAAGCTAATTCGGGTCACC+CGG + chr1_1:78037410-78037429 Msa0046020:CDS 50.0%
AAAGCTAATTCGGGTCACCC+GGG + chr1_1:78037411-78037430 Msa0046020:CDS 50.0%
GCAATGGAGTTGGAGGTCAT+AGG + chr1_1:78037795-78037814 Msa0046020:intron 50.0%
CAATGGGGAAGCAAAACTCC+TGG + chr1_1:78038158-78038177 Msa0046020:CDS 50.0%
CCCGAGAACTTCGAGACATA+TGG + chr1_1:78038185-78038204 Msa0046020:CDS 50.0%
TTGTTTAGGTCCTCTGGGTC+AGG + chr1_1:78038332-78038351 Msa0046020:intron 50.0%
TGTTTAGGTCCTCTGGGTCA+GGG + chr1_1:78038333-78038352 Msa0046020:intron 50.0%
!! CAGGGTATTGCCAATGGTGT+TGG + chr1_1:78038351-78038370 Msa0046020:CDS 50.0%
GTGTTCACTTGCCGGACATT+GGG + chr1_1:78038620-78038639 Msa0046020:CDS 50.0%
TGTTCACTTGCCGGACATTG+GGG + chr1_1:78038621-78038640 Msa0046020:CDS 50.0%
CTTTCCAAGACCCCAATGTC+CGG - chr1_1:78038634-78038653 None:intergenic 50.0%
TGGTTTCGATGCTGGTCACA+TGG + chr1_1:78039002-78039021 Msa0046020:intron 50.0%
AGTGTTCACGGAGCTGCATT+GGG + chr1_1:78039107-78039126 Msa0046020:CDS 50.0%
GGCACATGGAAAGGCTCATA+TGG - chr1_1:78039173-78039192 None:intergenic 50.0%
TATGGCGACTCCAATGCCTA+AGG - chr1_1:78039287-78039306 None:intergenic 50.0%
AGTGCTTTCTCCCAATCAGC+AGG - chr1_1:78039420-78039439 None:intergenic 50.0%
!!! GCTCTTCTGGAGTAGCCTTT+TGG - chr1_1:78039777-78039796 None:intergenic 50.0%
GCAATGGGAGCAATCTGCAA+TGG + chr1_1:78039826-78039845 Msa0046020:CDS 50.0%
GGTATTGCTCTTCATAGCCC+GGG + chr1_1:78039847-78039866 Msa0046020:CDS 50.0%
! TCATCAGCCAATAGAGCACC+TGG + chr1_1:78040008-78040027 Msa0046020:CDS 50.0%
AAGCTTGCCAGGTGCTCTAT+TGG - chr1_1:78040018-78040037 None:intergenic 50.0%
TTGATGCTTCGTCCAGCTGA+TGG + chr1_1:78040057-78040076 Msa0046020:CDS 50.0%
! GGGTCTCTTCTGGTTAAGCA+CGG - chr1_1:78040112-78040131 None:intergenic 50.0%
CCGAGAAAGGGCAAGAATTG+AGG - chr1_1:78040133-78040152 None:intergenic 50.0%
CTCTAGCTGTCACAGAAGCA+GGG - chr1_1:78040398-78040417 None:intergenic 50.0%
ACTCTAGCTGTCACAGAAGC+AGG - chr1_1:78040399-78040418 None:intergenic 50.0%
GACAGCTAGAGTCAGCATTG+AGG + chr1_1:78040407-78040426 Msa0046020:CDS 50.0%
! AGCTAGAGTCAGCATTGAGG+CGG + chr1_1:78040410-78040429 Msa0046020:CDS 50.0%
AGGCGGGATCAACATTTGGT+TGG + chr1_1:78040427-78040446 Msa0046020:CDS 50.0%
TCTCTAGATGTGCTCTGACG+TGG + chr1_1:78040858-78040877 Msa0046020:three_prime_UTR 50.0%
GAAGGAGAGGGAAGAAGTGG+AGG - chr1_1:78037211-78037230 None:intergenic 55.0%
AGGGAAGGAGAGGGAAGAAG+TGG - chr1_1:78037214-78037233 None:intergenic 55.0%
GGAGGATTTGAGTGCAGGGA+AGG - chr1_1:78037229-78037248 None:intergenic 55.0%
CTCAACGAGAGAAGCTTCGG+TGG - chr1_1:78037346-78037365 None:intergenic 55.0%
CACAACCCATGGGTAAACCC+GGG - chr1_1:78037431-78037450 None:intergenic 55.0%
GCACAACCCATGGGTAAACC+CGG - chr1_1:78037432-78037451 None:intergenic 55.0%
! ACCCATGGGTTGTGCTCCAA+TGG + chr1_1:78037437-78037456 Msa0046020:CDS 55.0%
CCCATTGGAGCACAACCCAT+GGG - chr1_1:78037441-78037460 None:intergenic 55.0%
! CCCATGGGTTGTGCTCCAAT+GGG + chr1_1:78037438-78037457 Msa0046020:CDS 55.0%
ACCCATTGGAGCACAACCCA+TGG - chr1_1:78037442-78037461 None:intergenic 55.0%
TCGAAGTTCTCGGGATGTCC+AGG - chr1_1:78038179-78038198 None:intergenic 55.0%
TTGGCAATACCCTGACCCAG+AGG - chr1_1:78038345-78038364 None:intergenic 55.0%
!! CTGGGTCAGGGTATTGCCAA+TGG + chr1_1:78038345-78038364 Msa0046020:CDS 55.0%
CGTGTTCACTTGCCGGACAT+TGG + chr1_1:78038619-78038638 Msa0046020:CDS 55.0%
TGCAGCTCCGTGAACACTGT+AGG - chr1_1:78039105-78039124 None:intergenic 55.0%
CAGTGTTCACGGAGCTGCAT+TGG + chr1_1:78039106-78039125 Msa0046020:CDS 55.0%
AGAGGAGGCTGCAGAGCTAA+AGG + chr1_1:78039374-78039393 Msa0046020:CDS 55.0%
GTAGCATCAGCAGGGGTTTC+CGG - chr1_1:78039637-78039656 None:intergenic 55.0%
ACCAGGAAGAACCTTGGCCA+GGG - chr1_1:78039689-78039708 None:intergenic 55.0%
GCACTGCCACCAATAAGACC+AGG - chr1_1:78039706-78039725 None:intergenic 55.0%
! TGGTGTCAGGGAACACGCAA+TGG + chr1_1:78039810-78039829 Msa0046020:CDS 55.0%
GGTGTCAGGGAACACGCAAT+GGG + chr1_1:78039811-78039830 Msa0046020:CDS 55.0%
! GCTAGAGTCAGCATTGAGGC+GGG + chr1_1:78040411-78040430 Msa0046020:CDS 55.0%
! TTTGGAGCAAGTGCTCCAGC+AGG + chr1_1:78040495-78040514 Msa0046020:CDS 55.0%
TTGGAGCAAGTGCTCCAGCA+GGG + chr1_1:78040496-78040515 Msa0046020:CDS 55.0%
GAAGGAGAGGGAAGAAGTGG+AGG - chr1_1:78037211-78037230 None:intergenic 55.0%
AGGGAAGGAGAGGGAAGAAG+TGG - chr1_1:78037214-78037233 None:intergenic 55.0%
GGAGGATTTGAGTGCAGGGA+AGG - chr1_1:78037229-78037248 None:intergenic 55.0%
CTCAACGAGAGAAGCTTCGG+TGG - chr1_1:78037346-78037365 None:intergenic 55.0%
CACAACCCATGGGTAAACCC+GGG - chr1_1:78037431-78037450 None:intergenic 55.0%
GCACAACCCATGGGTAAACC+CGG - chr1_1:78037432-78037451 None:intergenic 55.0%
! ACCCATGGGTTGTGCTCCAA+TGG + chr1_1:78037437-78037456 Msa0046020:CDS 55.0%
CCCATTGGAGCACAACCCAT+GGG - chr1_1:78037441-78037460 None:intergenic 55.0%
! CCCATGGGTTGTGCTCCAAT+GGG + chr1_1:78037438-78037457 Msa0046020:CDS 55.0%
ACCCATTGGAGCACAACCCA+TGG - chr1_1:78037442-78037461 None:intergenic 55.0%
TCGAAGTTCTCGGGATGTCC+AGG - chr1_1:78038179-78038198 None:intergenic 55.0%
TTGGCAATACCCTGACCCAG+AGG - chr1_1:78038345-78038364 None:intergenic 55.0%
!! CTGGGTCAGGGTATTGCCAA+TGG + chr1_1:78038345-78038364 Msa0046020:CDS 55.0%
CGTGTTCACTTGCCGGACAT+TGG + chr1_1:78038619-78038638 Msa0046020:CDS 55.0%
TGCAGCTCCGTGAACACTGT+AGG - chr1_1:78039105-78039124 None:intergenic 55.0%
CAGTGTTCACGGAGCTGCAT+TGG + chr1_1:78039106-78039125 Msa0046020:CDS 55.0%
AGAGGAGGCTGCAGAGCTAA+AGG + chr1_1:78039374-78039393 Msa0046020:CDS 55.0%
GTAGCATCAGCAGGGGTTTC+CGG - chr1_1:78039637-78039656 None:intergenic 55.0%
ACCAGGAAGAACCTTGGCCA+GGG - chr1_1:78039689-78039708 None:intergenic 55.0%
GCACTGCCACCAATAAGACC+AGG - chr1_1:78039706-78039725 None:intergenic 55.0%
! TGGTGTCAGGGAACACGCAA+TGG + chr1_1:78039810-78039829 Msa0046020:CDS 55.0%
GGTGTCAGGGAACACGCAAT+GGG + chr1_1:78039811-78039830 Msa0046020:CDS 55.0%
! GCTAGAGTCAGCATTGAGGC+GGG + chr1_1:78040411-78040430 Msa0046020:CDS 55.0%
! TTTGGAGCAAGTGCTCCAGC+AGG + chr1_1:78040495-78040514 Msa0046020:CDS 55.0%
TTGGAGCAAGTGCTCCAGCA+GGG + chr1_1:78040496-78040515 Msa0046020:CDS 55.0%
TGAGGTATACGGCACGTGCG+AGG - chr1_1:78037161-78037180 None:intergenic 60.0%
! TGTGGTTCTGCGACGGGAAC+CGG - chr1_1:78037283-78037302 None:intergenic 60.0%
! TGGCTGGTGTGGTTCTGCGA+CGG - chr1_1:78037290-78037309 None:intergenic 60.0%
GTCGAGTGTTTCGACAGCGG+TGG - chr1_1:78037319-78037338 None:intergenic 60.0%
GGTCACCCGGGTTTACCCAT+GGG + chr1_1:78037423-78037442 Msa0046020:CDS 60.0%
!! GGCACTTGCCGAGAAGCACT+TGG + chr1_1:78038377-78038396 Msa0046020:CDS 60.0%
CCGTGCAGCCAAGTGCTTCT+CGG - chr1_1:78038388-78038407 None:intergenic 60.0%
!! CCGAGAAGCACTTGGCTGCA+CGG + chr1_1:78038385-78038404 Msa0046020:CDS 60.0%
CTTGCCGGACATTGGGGTCT+TGG + chr1_1:78038627-78038646 Msa0046020:CDS 60.0%
TTGGAGTCGCCATACCCCTG+AGG + chr1_1:78039293-78039312 Msa0046020:CDS 60.0%
TGGAGTCGCCATACCCCTGA+GGG + chr1_1:78039294-78039313 Msa0046020:CDS 60.0%
TTCGAGTGCAGCACCCTCAG+GGG - chr1_1:78039310-78039329 None:intergenic 60.0%
CTTCGAGTGCAGCACCCTCA+GGG - chr1_1:78039311-78039330 None:intergenic 60.0%
GTGCTGCACTCGAAGCTGAG+TGG + chr1_1:78039316-78039335 Msa0046020:CDS 60.0%
GACCAGGAAGAACCTTGGCC+AGG - chr1_1:78039690-78039709 None:intergenic 60.0%
GCATTGCTCGGAAGCTTGCC+AGG - chr1_1:78040029-78040048 None:intergenic 60.0%
TAGATCATCAGCGGCGGCAG+CGG - chr1_1:78040286-78040305 None:intergenic 60.0%
CTGCCGCCGCTGATGATCTA+AGG + chr1_1:78040286-78040305 Msa0046020:CDS 60.0%
TGAGGTATACGGCACGTGCG+AGG - chr1_1:78037161-78037180 None:intergenic 60.0%
! TGTGGTTCTGCGACGGGAAC+CGG - chr1_1:78037283-78037302 None:intergenic 60.0%
! TGGCTGGTGTGGTTCTGCGA+CGG - chr1_1:78037290-78037309 None:intergenic 60.0%
GTCGAGTGTTTCGACAGCGG+TGG - chr1_1:78037319-78037338 None:intergenic 60.0%
GGTCACCCGGGTTTACCCAT+GGG + chr1_1:78037423-78037442 Msa0046020:CDS 60.0%
!! GGCACTTGCCGAGAAGCACT+TGG + chr1_1:78038377-78038396 Msa0046020:CDS 60.0%
CCGTGCAGCCAAGTGCTTCT+CGG - chr1_1:78038388-78038407 None:intergenic 60.0%
!! CCGAGAAGCACTTGGCTGCA+CGG + chr1_1:78038385-78038404 Msa0046020:CDS 60.0%
CTTGCCGGACATTGGGGTCT+TGG + chr1_1:78038627-78038646 Msa0046020:CDS 60.0%
TTGGAGTCGCCATACCCCTG+AGG + chr1_1:78039293-78039312 Msa0046020:CDS 60.0%
TGGAGTCGCCATACCCCTGA+GGG + chr1_1:78039294-78039313 Msa0046020:CDS 60.0%
TTCGAGTGCAGCACCCTCAG+GGG - chr1_1:78039310-78039329 None:intergenic 60.0%
CTTCGAGTGCAGCACCCTCA+GGG - chr1_1:78039311-78039330 None:intergenic 60.0%
GTGCTGCACTCGAAGCTGAG+TGG + chr1_1:78039316-78039335 Msa0046020:CDS 60.0%
GACCAGGAAGAACCTTGGCC+AGG - chr1_1:78039690-78039709 None:intergenic 60.0%
GCATTGCTCGGAAGCTTGCC+AGG - chr1_1:78040029-78040048 None:intergenic 60.0%
TAGATCATCAGCGGCGGCAG+CGG - chr1_1:78040286-78040305 None:intergenic 60.0%
CTGCCGCCGCTGATGATCTA+AGG + chr1_1:78040286-78040305 Msa0046020:CDS 60.0%
CCAGCAGCAACCTCCTCAGC+CGG + chr1_1:78037261-78037280 Msa0046020:CDS 65.0%
! GGCTGGTGTGGTTCTGCGAC+GGG - chr1_1:78037289-78037308 None:intergenic 65.0%
GTGTTTCGACAGCGGTGGCG+CGG - chr1_1:78037314-78037333 None:intergenic 65.0%
GGGTCACCCGGGTTTACCCA+TGG + chr1_1:78037422-78037441 Msa0046020:CDS 65.0%
GTGCAGCACCCTCAGGGGTA+TGG - chr1_1:78039305-78039324 None:intergenic 65.0%
GCTTCGAGTGCAGCACCCTC+AGG - chr1_1:78039312-78039331 None:intergenic 65.0%
GCCCTGGCCAAGGTTCTTCC+TGG + chr1_1:78039685-78039704 Msa0046020:CDS 65.0%
CCAGCAGCAACCTCCTCAGC+CGG + chr1_1:78037261-78037280 Msa0046020:CDS 65.0%
! GGCTGGTGTGGTTCTGCGAC+GGG - chr1_1:78037289-78037308 None:intergenic 65.0%
GTGTTTCGACAGCGGTGGCG+CGG - chr1_1:78037314-78037333 None:intergenic 65.0%
GGGTCACCCGGGTTTACCCA+TGG + chr1_1:78037422-78037441 Msa0046020:CDS 65.0%
GTGCAGCACCCTCAGGGGTA+TGG - chr1_1:78039305-78039324 None:intergenic 65.0%
GCTTCGAGTGCAGCACCCTC+AGG - chr1_1:78039312-78039331 None:intergenic 65.0%
GCCCTGGCCAAGGTTCTTCC+TGG + chr1_1:78039685-78039704 Msa0046020:CDS 65.0%
CCGGCTGAGGAGGTTGCTGC+TGG - chr1_1:78037264-78037283 None:intergenic 70.0%
TCTGCGACGGGAACCGGCTG+AGG - chr1_1:78037277-78037296 None:intergenic 70.0%
TTCGACAGCGGTGGCGCGGA+TGG - chr1_1:78037310-78037329 None:intergenic 70.0%
CCGGCTGAGGAGGTTGCTGC+TGG - chr1_1:78037264-78037283 None:intergenic 70.0%
TCTGCGACGGGAACCGGCTG+AGG - chr1_1:78037277-78037296 None:intergenic 70.0%
TTCGACAGCGGTGGCGCGGA+TGG - chr1_1:78037310-78037329 None:intergenic 70.0%
GCGACGGGAACCGGCTGAGG+AGG - chr1_1:78037274-78037293 None:intergenic 75.0%
GGTGGCGCGGATGGCTGGTG+TGG - chr1_1:78037301-78037320 None:intergenic 75.0%
ACAGCGGTGGCGCGGATGGC+TGG - chr1_1:78037306-78037325 None:intergenic 75.0%
GCGACGGGAACCGGCTGAGG+AGG - chr1_1:78037274-78037293 None:intergenic 75.0%
GGTGGCGCGGATGGCTGGTG+TGG - chr1_1:78037301-78037320 None:intergenic 75.0%
ACAGCGGTGGCGCGGATGGC+TGG - chr1_1:78037306-78037325 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 78036872 78040956 78036872 ID=Msa0046020;Name=Msa0046020
chr1_1 mRNA 78036872 78040956 78036872 ID=Msa0046020-mRNA-1;Parent=Msa0046020;Name=Msa0046020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=248|1|1|1|1|1|7|372|741
chr1_1 exon 78036872 78037602 78036872 ID=Msa0046020-mRNA-1:exon:26742;Parent=Msa0046020-mRNA-1
chr1_1 exon 78038134 78038224 78038134 ID=Msa0046020-mRNA-1:exon:26743;Parent=Msa0046020-mRNA-1
chr1_1 exon 78038340 78038445 78038340 ID=Msa0046020-mRNA-1:exon:26744;Parent=Msa0046020-mRNA-1
chr1_1 exon 78038569 78038851 78038569 ID=Msa0046020-mRNA-1:exon:26745;Parent=Msa0046020-mRNA-1
chr1_1 exon 78039059 78039207 78039059 ID=Msa0046020-mRNA-1:exon:26746;Parent=Msa0046020-mRNA-1
chr1_1 exon 78039290 78039443 78039290 ID=Msa0046020-mRNA-1:exon:26747;Parent=Msa0046020-mRNA-1
chr1_1 exon 78039625 78040956 78039625 ID=Msa0046020-mRNA-1:exon:26748;Parent=Msa0046020-mRNA-1
chr1_1 five_prime_UTR 78036872 78037119 78036872 ID=Msa0046020-mRNA-1:five_prime_utr;Parent=Msa0046020-mRNA-1
chr1_1 CDS 78037120 78037602 78037120 ID=Msa0046020-mRNA-1:cds;Parent=Msa0046020-mRNA-1
chr1_1 CDS 78038134 78038224 78038134 ID=Msa0046020-mRNA-1:cds;Parent=Msa0046020-mRNA-1
chr1_1 CDS 78038340 78038445 78038340 ID=Msa0046020-mRNA-1:cds;Parent=Msa0046020-mRNA-1
chr1_1 CDS 78038569 78038851 78038569 ID=Msa0046020-mRNA-1:cds;Parent=Msa0046020-mRNA-1
chr1_1 CDS 78039059 78039207 78039059 ID=Msa0046020-mRNA-1:cds;Parent=Msa0046020-mRNA-1
chr1_1 CDS 78039290 78039443 78039290 ID=Msa0046020-mRNA-1:cds;Parent=Msa0046020-mRNA-1
chr1_1 CDS 78039625 78040584 78039625 ID=Msa0046020-mRNA-1:cds;Parent=Msa0046020-mRNA-1
chr1_1 three_prime_UTR 78040585 78040956 78040585 ID=Msa0046020-mRNA-1:three_prime_utr;Parent=Msa0046020-mRNA-1
Gene Sequence

>Msa0046020

ATGGCTTCTTCTTCTTCTCTTCATCTTTCTCAAGCATTCCTCGCACGTGCCGTATACCTCAACCCTGAAATTCGTGCATCATCACTCTCCTCCACTTCTTCCCTCTCCTTCCCTGCACTCAAATCCTCCTCTTCATGCAAACCAGCAGCAACCTCCTCAGCCGGTTCCCGTCGCAGAACCACACCAGCCATCCGCGCCACCGCTGTCGAAACACTCGACAAAACCACCGAAGCTTCTCTCGTTGAGAAATCAGTCAACACTATTCGATTCCTTGCTATCGATGCTGTTGAGAAAGCTAATTCGGGTCACCCGGGTTTACCCATGGGTTGTGCTCCAATGGGTCACATTCTATACGATGAAGTTATGAGATATAACCCAAAGAATCCTTCTTGGTTTAATCGTGATCGCTTTGTTTTGTCTGCTGGACATGGTTGTATGCTTCAGTATGCTCTTCTTCATCTTGCTGGTTATGACAGTGTCAAGGAAGAAGACTTGAAGCAGTTTCGACAATGGGGAAGCAAAACTCCTGGACATCCCGAGAACTTCGAGACATATGGAATTGAAGTCACCACAGGTCCTCTGGGTCAGGGTATTGCCAATGGTGTTGGATTGGCACTTGCCGAGAAGCACTTGGCTGCACGGTTTAACAAGCCTGACAGTGAGATTGTTGACCATTACACGTATGTTATATTAGGAGATGGTTGTCAAATGGAAGGAATTTCAAATGAAGCGTGTTCACTTGCCGGACATTGGGGTCTTGGAAAGCTTATTGCATTTTATGATGATAATCACATATCTATTGATGGTGACACTGAAATTGCATTCACTGAGAATGTTGATCAACGTTTTGAGGCACTTGGATGGCATGTGATTTGGGTAAAGAACGGAAATACTGGATATGATGAAATTCGTGCAGCCATTAAGGAAGCAAAGGCTGTCACAGACAAACCTACTTTGATTAAGGTTACCACTACCATTGGATTTGGTTCTCCAAACAAAGCTAATTCCTACAGTGTTCACGGAGCTGCATTGGGTTCTAAAGAAGTAGATGCTACAAGGCAGAATCTTGGATGGCCATATGAGCCTTTCCATGTGCCAGAAGATGTTAAAAAGCATTGGAGTCGCCATACCCCTGAGGGTGCTGCACTCGAAGCTGAGTGGAATGCTAAATTTGCTGAGTATGAGAAGAAATACAAAGAGGAGGCTGCAGAGCTAAAGGCTATTATTAATCGTGAATTACCTGCTGATTGGGAGAAAGCACTTCCGACTTACACTCCGGAAACCCCTGCTGATGCTACAAGAAATCTGTCACAGCAAAATCTAAATGCCCTGGCCAAGGTTCTTCCTGGTCTTATTGGTGGCAGTGCAGATCTTGCCTCTTCCAACATGACTTTGTTGAAATCGTTTGGAGATTTCCAAAAGGCTACTCCAGAAGAGCGCAATGTTCGATTTGGTGTCAGGGAACACGCAATGGGAGCAATCTGCAATGGTATTGCTCTTCATAGCCCGGGATTCATTCCATACTGTGCAACTTTCTTTGTCTTCACCGACTACATGAGAGCTGCCATAAGGATTTCTGCCTTGTGTGAAGCCGGAGTTATTTATGTTATGACCCATGATTCAATTGGACTTGGAGAGGATGGACCAACTCATCAGCCAATAGAGCACCTGGCAAGCTTCCGAGCAATGCCAAATGTTTTGATGCTTCGTCCAGCTGATGGTAATGAAACTGCTGGATCATACAGAGTTGCCGTGCTTAACCAGAAGAGACCCTCAATTCTTGCCCTTTCTCGGCAAAAGTTGCCTAACCTTCCGGGAACTTCTATTGAAGGTGTTGAAAAGGGTGGCTACACCATTTCAGACAACTCATCAGGTAACAAGCCTGATGTTATTTTGATTGGAACTGGTTCTGAGTTGGAAATTGCCGCTGCCGCCGCTGATGATCTAAGGAAAGAAGGAAAAACTGTAAGAGTTGTTTCTTTTGTTAGCTGGGAACTTTTTGATGATCAGTCAGATGAATACAAGGAGAGTGTTCTCCCTGCTTCTGTGACAGCTAGAGTCAGCATTGAGGCGGGATCAACATTTGGTTGGCATAAGATTGTTGGAAGCAAGGGAAAAACCATTGGCATTGATCGATTTGGAGCAAGTGCTCCAGCAGGGAAAATATACAAGGAGTATGGCATAACCAAGGAAGCTGTTATTTCTGCTGCCAAAGAAGTTTCATAG
Protein sequence

>Msa0046020

MASSSSLHLSQAFLARAVYLNPEIRASSLSSTSSLSFPALKSSSSCKPAATSSAGSRRRTTPAIRATAVETLDKTTEASLVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPSWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSKTPGHPENFETYGIEVTTGPLGQGIANGVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGISNEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTENVDQRFEALGWHVIWVKNGNTGYDEIRAAIKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGAALGSKEVDATRQNLGWPYEPFHVPEDVKKHWSRHTPEGAALEAEWNAKFAEYEKKYKEEAAELKAIINRELPADWEKALPTYTPETPADATRNLSQQNLNALAKVLPGLIGGSADLASSNMTLLKSFGDFQKATPEERNVRFGVREHAMGAICNGIALHSPGFIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNVLMLRPADGNETAGSYRVAVLNQKRPSILALSRQKLPNLPGTSIEGVEKGGYTISDNSSGNKPDVILIGTGSELEIAAAAADDLRKEGKTVRVVSFVSWELFDDQSDEYKESVLPASVTARVSIEAGSTFGWHKIVGSKGKTIGIDRFGASAPAGKIYKEYGITKEAVISAAKEVS*