AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1414280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414280 MtrunA17_Chr4g0035691 96.911 259 8 0 222 480 19 277 0.0 514
Msa1414280 MtrunA17_Chr4g0035681 89.177 231 19 4 1 227 1 229 1.23e-141 405
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414280 AT2G21370.1 72.104 423 118 0 56 478 53 475 0.0 647
Msa1414280 AT2G21370.2 73.947 380 99 0 99 478 3 382 0.0 595
Msa1414280 AT2G21370.4 72.905 358 97 0 56 413 53 410 0.0 555
Msa1414280 AT2G21370.3 75.238 315 78 0 99 413 3 317 1.39e-178 503

Find 123 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATACTTGCATGGAATTT+TGG 0.172318 tig0024109:-24842 Msa1414280:CDS
CTTATTAACTACAATTAATT+AGG 0.186545 tig0024109:-23811 Msa1414280:three_prime_UTR
GCGCAGAATGTTCCTGAAAA+TGG 0.227014 tig0024109:-29090 None:intergenic
AACTCCAATTGCTTGTTTAA+AGG 0.241909 tig0024109:-27580 Msa1414280:CDS
AGAGACATTGATACTGTTCT+TGG 0.256310 tig0024109:+28800 None:intergenic
GAGGAACTTAGAAATAAATT+TGG 0.271597 tig0024109:-27558 Msa1414280:intron
CCTGAAGTTCCCTTATCCTT+TGG 0.278580 tig0024109:-29024 Msa1414280:five_prime_UTR
GAATCGAGGATTCTCGGTTT+GGG 0.311784 tig0024109:-26455 Msa1414280:CDS
TGATTCTTAGGTTACATCAT+TGG 0.316523 tig0024109:-26514 Msa1414280:intron
GGGTTGGACTTTGGCACTTC+CGG 0.317976 tig0024109:-28722 Msa1414280:CDS
CTGAAGTTCCCTTATCCTTT+GGG 0.319442 tig0024109:-29023 Msa1414280:five_prime_UTR
AAACAAGCAATTGGAGTTCC+AGG 0.322393 tig0024109:+27585 None:intergenic
GTCATCGCCTTGATGATAAA+TGG 0.338306 tig0024109:-26425 Msa1414280:CDS
CAGTACCTTGGAGCCAAATC+TGG 0.341368 tig0024109:+26243 None:intergenic
GTTGGTGGTGCTTCAAATAC+TGG 0.348663 tig0024109:-26399 Msa1414280:CDS
GGAAATCTTTCACCAGCTTT+TGG 0.354679 tig0024109:+26276 None:intergenic
TCTTATCTTCCCAAAGGATA+AGG 0.357228 tig0024109:+29014 None:intergenic
GATTCTTAGGTTACATCATT+GGG 0.360067 tig0024109:-26513 Msa1414280:intron
ATTGTGTCGATTTCTATTGA+TGG 0.365963 tig0024109:-28361 Msa1414280:CDS
TCCTCCTTTAAACAAGCAAT+TGG 0.368678 tig0024109:+27576 None:intergenic
TCCGGTTGCAGATCCAGATT+TGG 0.369397 tig0024109:-26256 Msa1414280:CDS
ATATGTGAAAGATGTTAAAA+TGG 0.372712 tig0024109:+28952 None:intergenic
GACGGTAAAAGATGAGAATA+TGG 0.373140 tig0024109:+27618 None:intergenic
TGGCAGAGGATAGTAGTCTA+AGG 0.378260 tig0024109:+26296 None:intergenic
CTTATCTTCCCAAAGGATAA+GGG 0.378527 tig0024109:+29015 None:intergenic
AAAAGCTGGTGAAAGATTTC+CGG 0.379132 tig0024109:-26274 Msa1414280:CDS
CCAAAGGATAAGGGAACTTC+AGG 0.380729 tig0024109:+29024 None:intergenic
CCTTTGGGAAGATAAGAAAA+TGG 0.381391 tig0024109:-29008 Msa1414280:exon
GATGGATATGAGTCCACTTC+AGG 0.389322 tig0024109:+27657 None:intergenic
AGAATCGAGGATTCTCGGTT+TGG 0.392673 tig0024109:-26456 Msa1414280:CDS
TGGCTTCTTCATGGAAAGCT+TGG 0.398484 tig0024109:-27832 Msa1414280:CDS
TGCATACGGAACTGCATTGT+TGG 0.411658 tig0024109:-23991 Msa1414280:CDS
AGCTATACTGTCAGTGGTTC+CGG 0.412191 tig0024109:+26979 None:intergenic
CGCAGAATGTTCCTGAAAAT+GGG 0.417963 tig0024109:-29089 None:intergenic
GATGTTAAAATGGTGCTTGC+TGG 0.419025 tig0024109:+28962 None:intergenic
TTCCGTATGCAGCTTCTGTT+TGG 0.420105 tig0024109:+24003 None:intergenic
TAGTTAATAAGTAGTTAAGT+TGG 0.421232 tig0024109:+23823 None:intergenic
GGAATCCATTGCACGTATAG+AGG 0.422783 tig0024109:-24821 Msa1414280:intron
GGAAACAGGTTATTACTGTT+AGG 0.425830 tig0024109:-28830 Msa1414280:CDS
TTACCGTCCGTTCTTGCACC+TGG 0.429144 tig0024109:-27603 Msa1414280:CDS
TGGTGGTAAAGTTGCGGACT+GGG 0.429675 tig0024109:+29052 None:intergenic
GCAGAGCATACTGTATGGTT+TGG 0.432761 tig0024109:+27949 None:intergenic
AACTGCATTGTTGGCAATGA+AGG 0.435765 tig0024109:-23982 Msa1414280:CDS
CTTGATGATAAATGGCTTGT+TGG 0.440900 tig0024109:-26417 Msa1414280:CDS
TTTACAGCAGGTAGTGCATC+AGG 0.446244 tig0024109:+27985 None:intergenic
GAAAATGATACCGAGTATAG+TGG 0.453765 tig0024109:+28638 None:intergenic
ACTCAAGAATCGAGGATTCT+CGG 0.455333 tig0024109:-26461 Msa1414280:CDS
CTGTATCTCGGGTTGGACTT+TGG 0.462776 tig0024109:-28731 Msa1414280:CDS
TGTTATTGCACCAAGCAGAT+TGG 0.463073 tig0024109:-27861 Msa1414280:CDS
GCCAAATCTGGATCTGCAAC+CGG 0.465717 tig0024109:+26255 None:intergenic
GAATGGAGAGTCACATGATT+GGG 0.467158 tig0024109:-28449 Msa1414280:CDS
ATCTATTAGATACGATATCT+AGG 0.480531 tig0024109:+23879 None:intergenic
TATGGGTTGCTAAAGGATCT+AGG 0.488772 tig0024109:-24131 Msa1414280:CDS
GCCACAAAAGCCAATCTGCT+TGG 0.490266 tig0024109:+27851 None:intergenic
CAGGTGAAAGGCTGTATCTC+GGG 0.490454 tig0024109:-28742 Msa1414280:CDS
AGAATGGAGAGTCACATGAT+TGG 0.492505 tig0024109:-28450 Msa1414280:CDS
CAACTCTCATTGTAAAGTAA+AGG 0.495280 tig0024109:+28009 None:intergenic
TGATGCATTTGCCCTTAAGT+TGG 0.497875 tig0024109:+23936 None:intergenic
ATGTGTTTGCGAAGGTTAAG+TGG 0.500385 tig0024109:+28382 None:intergenic
TACTATCCTCTGCCAAAAGC+TGG 0.504038 tig0024109:-26288 Msa1414280:CDS
GATGATAAATGGCTTGTTGG+TGG 0.509846 tig0024109:-26414 Msa1414280:CDS
TTCACATATAGTCGAAAACT+TGG 0.512881 tig0024109:-28938 Msa1414280:intron
TGATACCGAGTATAGTGGAT+AGG 0.519047 tig0024109:+28643 None:intergenic
GCAGGTGAAAGGCTGTATCT+CGG 0.519687 tig0024109:-28743 Msa1414280:CDS
GTTTGGTTTGCACGACTCAC+AGG 0.521003 tig0024109:+24020 None:intergenic
TCTTACCTCTATACGTGCAA+TGG 0.527339 tig0024109:+24816 None:intergenic
TTTGCTATCATTGACATTGG+TGG 0.527618 tig0024109:-28692 Msa1414280:CDS
TAAAATGGTGCTTGCTGGGT+GGG 0.528829 tig0024109:+28967 None:intergenic
TCCAATTGCTTGTTTAAAGG+AGG 0.535092 tig0024109:-27577 Msa1414280:CDS
ATGGTGGTAAAGTTGCGGAC+TGG 0.535458 tig0024109:+29051 None:intergenic
AAGATACGAGAAAGGGTGCT+TGG 0.539627 tig0024109:-24047 Msa1414280:CDS
AGATTATAATAATGCTCTGA+AGG 0.544841 tig0024109:-27803 Msa1414280:intron
GCAGCTCGTGCTACTCAACC+TGG 0.545958 tig0024109:-26947 Msa1414280:CDS
TGGAGTTCCAGGTGCAAGAA+CGG 0.546664 tig0024109:+27596 None:intergenic
GGTTGAGAGACTAGCCATGA+TGG 0.547884 tig0024109:+27639 None:intergenic
CAACTACTATCATTGTTGCT+AGG 0.550256 tig0024109:-28330 Msa1414280:intron
GATACCGAGTATAGTGGATA+GGG 0.550490 tig0024109:+28644 None:intergenic
CAGTTTCTCTAGTTGATCAT+CGG 0.550710 tig0024109:+26350 None:intergenic
AAAGGGATATGGGTTGCTAA+AGG 0.551626 tig0024109:-24138 Msa1414280:CDS
CAACAAGCCATTTATCATCA+AGG 0.552580 tig0024109:+26418 None:intergenic
AGTGGACAAAGATACGAGAA+AGG 0.554823 tig0024109:-24055 Msa1414280:CDS
TGGATAGGGTCGCTTTGCCT+CGG 0.555768 tig0024109:+28658 None:intergenic
ATGTTAAAATGGTGCTTGCT+GGG 0.557496 tig0024109:+28963 None:intergenic
CAGATCCAGATTTGGCTCCA+AGG 0.557605 tig0024109:-26248 Msa1414280:intron
CACATGATTGGGTACGCTCG+TGG 0.559882 tig0024109:-28438 Msa1414280:CDS
AATGATGTTGAATACTTGCA+TGG 0.562603 tig0024109:-24850 Msa1414280:CDS
AATCGAGGATTCTCGGTTTG+GGG 0.569766 tig0024109:-26454 Msa1414280:CDS
AAGTGGACTCATATCCATCA+TGG 0.572768 tig0024109:-27653 Msa1414280:CDS
AAGGAGTGTGTTGTATGCAC+CGG 0.573060 tig0024109:-26998 Msa1414280:CDS
TGAAAGGCTGTATCTCGGGT+TGG 0.578609 tig0024109:-28738 Msa1414280:CDS
CTCTGTGTAAGCTCGTGTCA+TGG 0.583558 tig0024109:-27918 Msa1414280:CDS
TGGGAAGATAAGAAAATGGT+AGG 0.584118 tig0024109:-29004 Msa1414280:exon
GAGCATACTGTATGGTTTGG+AGG 0.585331 tig0024109:+27952 None:intergenic
AGATTTGCTATCATTGACAT+TGG 0.585612 tig0024109:-28695 Msa1414280:CDS
AACCAAACAGAAGCTGCATA+CGG 0.586418 tig0024109:-24005 Msa1414280:CDS
TGTGTTTGCGAAGGTTAAGT+GGG 0.587553 tig0024109:+28383 None:intergenic
TGTATGGTTTGGAGGTGCAA+TGG 0.588665 tig0024109:+27960 None:intergenic
GTAGTGTGGGAGCAGGTGAA+AGG 0.597368 tig0024109:-28754 Msa1414280:CDS
GTCTAAGGAAGATATTTGTG+AGG 0.598899 tig0024109:+26311 None:intergenic
TTAAAATGGTGCTTGCTGGG+TGG 0.598985 tig0024109:+28966 None:intergenic
ACGATGCAGAGCATACTGTA+TGG 0.600239 tig0024109:+27944 None:intergenic
AATGATAGCAAATCTTGCAC+CGG 0.609625 tig0024109:+28703 None:intergenic
ATGTTGTACTGCAGTGACAC+AGG 0.614244 tig0024109:-28048 Msa1414280:intron
TGTGAAAACTTGATCCACTA+CGG 0.615420 tig0024109:+24103 None:intergenic
TCTAAGGAAGATATTTGTGA+GGG 0.615510 tig0024109:+26312 None:intergenic
TCGACACAATGTGTTTGCGA+AGG 0.617735 tig0024109:+28374 None:intergenic
GGATCTAGGTGCAACCGTAG+TGG 0.620019 tig0024109:-24117 Msa1414280:CDS
GAACAATGGTGGTAAAGTTG+CGG 0.627822 tig0024109:+29046 None:intergenic
AAACGCAGCTATACTGTCAG+TGG 0.632976 tig0024109:+26973 None:intergenic
TAAGGGAACTTCAGGAACAA+TGG 0.633568 tig0024109:+29032 None:intergenic
GTGACACAGGAGAACCGTTG+TGG 0.635099 tig0024109:-28035 Msa1414280:CDS
GCGACCCTATCCACTATACT+CGG 0.636506 tig0024109:-28648 Msa1414280:intron
GTGTCATGGTGGAATCGTGA+TGG 0.637856 tig0024109:-27904 Msa1414280:CDS
ACTGCATTGTTGGCAATGAA+GGG 0.646066 tig0024109:-23981 Msa1414280:CDS
TGGTGGCACAATTCAAGCCG+AGG 0.648456 tig0024109:-28675 Msa1414280:CDS
GTGGACAAAGATACGAGAAA+GGG 0.650371 tig0024109:-24054 Msa1414280:CDS
GTTCCAGGTGCAAGAACGGA+CGG 0.651034 tig0024109:+27600 None:intergenic
ATTAAGCAACTCAAGAATCG+AGG 0.655962 tig0024109:-26469 Msa1414280:CDS
GGGAACTTCAGGAACAATGG+TGG 0.667525 tig0024109:+29035 None:intergenic
GGTTGGGTATGATCCTGAAG+TGG 0.669877 tig0024109:-27670 Msa1414280:CDS
TAAAGTAAAGGTCTCCACAA+CGG 0.675201 tig0024109:+28021 None:intergenic
TGTGTAAGCTCGTGTCATGG+TGG 0.682794 tig0024109:-27915 Msa1414280:CDS
GGTGGTGCTTCAAATACTGG+AGG 0.715567 tig0024109:-26396 Msa1414280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTAGATTTATTTTAATA+CGG - tig0024109:26880-26899 Msa1414280:intron 10.0%
!! CATGAATAAATAATTAAAGA+AGG + tig0024109:25934-25953 None:intergenic 15.0%
!!! AAATTAAGATTTTCAAAAGA+TGG - tig0024109:25977-25996 Msa1414280:intron 15.0%
!!! AGAGCATTTAAATTATATTT+TGG + tig0024109:26135-26154 None:intergenic 15.0%
!! TATACAAGCTAATATTATAA+CGG + tig0024109:26662-26681 None:intergenic 15.0%
!! TTTATAAAATTAACTCACTT+GGG - tig0024109:26688-26707 Msa1414280:intron 15.0%
!!! ATCTAGATTTATTTTAATAC+GGG - tig0024109:26881-26900 Msa1414280:intron 15.0%
!! AATAAAAAACTATTATTGAC+AGG + tig0024109:26927-26946 None:intergenic 15.0%
!!! AATAGTATTCTAAAAACAAA+AGG + tig0024109:26950-26969 None:intergenic 15.0%
!! ATTAAATCTGATTCTTTATA+TGG + tig0024109:27779-27798 None:intergenic 15.0%
!!! AATTTTACTTCATATAATGA+TGG + tig0024109:28061-28080 None:intergenic 15.0%
!! CTTATTAACTACAATTAATT+AGG - tig0024109:29016-29035 Msa1414280:five_prime_UTR 15.0%
!! ATATGTGAAAGATGTTAAAA+TGG + tig0024109:23878-23897 None:intergenic 20.0%
!!! TAATGTGATTGAGAATATTT+TGG - tig0024109:24257-24276 Msa1414280:intron 20.0%
!! AGTACAAAATATTGTCAAAT+TGG - tig0024109:24632-24651 Msa1414280:intron 20.0%
!! GTACAAAATATTGTCAAATT+GGG - tig0024109:24633-24652 Msa1414280:intron 20.0%
!! TACAAAATATTGTCAAATTG+GGG - tig0024109:24634-24653 Msa1414280:intron 20.0%
!!! TATTATCTATTTTTCTAGCT+AGG - tig0024109:25069-25088 Msa1414280:intron 20.0%
!! TGCAAAACATAAAAAAATTG+TGG + tig0024109:25137-25156 None:intergenic 20.0%
!!! ACAATTTTTTTATGTTTTGC+AGG - tig0024109:25136-25155 Msa1414280:intron 20.0%
!! TAAAAAGTTTATATGTGAGT+TGG + tig0024109:25456-25475 None:intergenic 20.0%
!! GAAATTGAAAATCATATACA+CGG - tig0024109:25783-25802 Msa1414280:intron 20.0%
!! TTATTTATTCATGATCTGTT+AGG - tig0024109:25941-25960 Msa1414280:intron 20.0%
!! ATCTTATTATAAATACAGTG+TGG + tig0024109:26039-26058 None:intergenic 20.0%
!! ACTGTATTTATAATAAGATC+AGG - tig0024109:26040-26059 Msa1414280:intron 20.0%
!! AATATAATTTAAATGCTCTG+TGG - tig0024109:26136-26155 Msa1414280:intron 20.0%
!! CTTATTAATTCAAAACCTTA+AGG - tig0024109:26223-26242 Msa1414280:intron 20.0%
!!! GTGAGTTAATTTTATAAAGA+AGG + tig0024109:26686-26705 None:intergenic 20.0%
!! CTTTATAAAATTAACTCACT+TGG - tig0024109:26687-26706 Msa1414280:intron 20.0%
!!! TTAGAATACTATTTTTTCTC+CGG - tig0024109:26957-26976 Msa1414280:CDS 20.0%
!! TTGTAGATTTAATGAAATAC+CGG + tig0024109:26979-26998 None:intergenic 20.0%
!!! CTACTACTATTTTAGAATTT+AGG - tig0024109:27178-27197 Msa1414280:intron 20.0%
!! AATAAATATACTCCAATGTA+AGG + tig0024109:27562-27581 None:intergenic 20.0%
!! TACATTGGAGTATATTTATT+AGG - tig0024109:27562-27581 Msa1414280:CDS 20.0%
!!! ATTTATTAGGAGCTTTAAAA+AGG - tig0024109:27512-27531 Msa1414280:intron 20.0%
!!! TATTTCCTTTTCTTTCTAAA+AGG + tig0024109:27659-27678 None:intergenic 20.0%
!! TAAAGAATCAGATTTAATGT+TGG - tig0024109:27781-27800 Msa1414280:intron 20.0%
!!! TTATTTTGCATAATGACTAA+TGG - tig0024109:27916-27935 Msa1414280:CDS 20.0%
!! TCCAATAAAGTTTATGAAAA+TGG + tig0024109:28282-28301 None:intergenic 20.0%
!!! TGAGTTGAACAATAAATTTA+AGG + tig0024109:28467-28486 None:intergenic 20.0%
!! CTGTAAAAAAAAAAATGAGT+TGG + tig0024109:28576-28595 None:intergenic 20.0%
!!! TATTTTGCTCTTACATTTTT+TGG - tig0024109:28607-28626 Msa1414280:intron 20.0%
!! AGTAGTAATAAAAATTAGGA+TGG - tig0024109:28921-28940 Msa1414280:intron 20.0%
!! TAGTTAATAAGTAGTTAAGT+TGG + tig0024109:29007-29026 None:intergenic 20.0%
!! AAAAATGGTGTCAAAATAAG+TGG + tig0024109:23951-23970 None:intergenic 25.0%
!! GTAGCATGAAAGTATAAAAA+TGG + tig0024109:23966-23985 None:intergenic 25.0%
! AGATAACAAAAAAAGTAGTG+TGG - tig0024109:24059-24078 Msa1414280:CDS 25.0%
! GATAACAAAAAAAGTAGTGT+GGG - tig0024109:24060-24079 Msa1414280:CDS 25.0%
!!! TTGACAATGTTCTAAAATTG+TGG - tig0024109:24295-24314 Msa1414280:intron 25.0%
!! ATTGTATTTGAATTCTGAAG+TGG - tig0024109:24754-24773 Msa1414280:intron 25.0%
!!! TTGTATTTGAATTCTGAAGT+GGG - tig0024109:24755-24774 Msa1414280:intron 25.0%
! AGATTATAATAATGCTCTGA+AGG - tig0024109:25024-25043 Msa1414280:intron 25.0%
!!! TTTTTTTATGTTTTGCAGGT+TGG - tig0024109:25140-25159 Msa1414280:intron 25.0%
!!! TTTTTTATGTTTTGCAGGTT+GGG - tig0024109:25141-25160 Msa1414280:intron 25.0%
! GAGGAACTTAGAAATAAATT+TGG - tig0024109:25269-25288 Msa1414280:intron 25.0%
! AAGCATTATCCCTATAAAAT+GGG + tig0024109:25525-25544 None:intergenic 25.0%
! TAAGCATTATCCCTATAAAA+TGG + tig0024109:25526-25545 None:intergenic 25.0%
! AGGGATAATGCTTATTAATA+TGG - tig0024109:25532-25551 Msa1414280:intron 25.0%
! GAAAGAAGAATATTGAGATA+AGG + tig0024109:25589-25608 None:intergenic 25.0%
! TCTCAATATTCTTCTTTCTT+TGG - tig0024109:25591-25610 Msa1414280:intron 25.0%
!!! CAAAGATTTTAACCAAGTTA+AGG + tig0024109:25756-25775 None:intergenic 25.0%
! CCATAGCAATCATATATATT+AGG + tig0024109:26078-26097 None:intergenic 25.0%
! CCTAATATATATGATTGCTA+TGG - tig0024109:26075-26094 Msa1414280:intron 25.0%
!!! AAATTATATTTTGGTAGACC+AGG + tig0024109:26126-26145 None:intergenic 25.0%
! ACATTATGAGAAACAAAACA+AGG + tig0024109:26292-26311 None:intergenic 25.0%
! TCTCATAATGTTTGATTCTT+AGG - tig0024109:26301-26320 Msa1414280:CDS 25.0%
!!! TTTTTTTAAAACTCGGTATC+CGG + tig0024109:26855-26874 None:intergenic 25.0%
! ATCTACAAATCATCATGTTA+AGG - tig0024109:26991-27010 Msa1414280:CDS 25.0%
! CAAAATTCTAAACTAAGCAT+TGG + tig0024109:27104-27123 None:intergenic 25.0%
!!! CAATGCTTAGTTTAGAATTT+TGG - tig0024109:27102-27121 Msa1414280:intron 25.0%
! CAAGAACAAACTTGAATATA+CGG + tig0024109:27334-27353 None:intergenic 25.0%
! AGTATTTCTTAACTACCTAA+CGG + tig0024109:27462-27481 None:intergenic 25.0%
! GATATCTTCAACAAAAGAAA+AGG - tig0024109:27484-27503 Msa1414280:intron 25.0%
! AGAAAAGGACAGTATTTATT+AGG - tig0024109:27499-27518 Msa1414280:intron 25.0%
!!! ATTAGGAGCTTTAAAATCAT+TGG - tig0024109:27516-27535 Msa1414280:intron 25.0%
! GAAATAAAAAATGTCCCAAA+AGG - tig0024109:27673-27692 Msa1414280:intron 25.0%
!! AAATGTCAAATAGTCCTTTT+GGG + tig0024109:27690-27709 None:intergenic 25.0%
! AAAATAAAAAGAGTCTTGGT+TGG + tig0024109:27903-27922 None:intergenic 25.0%
! ATGCAAAATAAAAAGAGTCT+TGG + tig0024109:27907-27926 None:intergenic 25.0%
!!! ACTAATGGAATTTGATTTTC+TGG - tig0024109:27931-27950 Msa1414280:CDS 25.0%
!!! CTAATGGAATTTGATTTTCT+GGG - tig0024109:27932-27951 Msa1414280:CDS 25.0%
!! AAGTATTCAACATCATTTTC+TGG + tig0024109:27974-27993 None:intergenic 25.0%
!!! GCCATTTTCATAAACTTTAT+TGG - tig0024109:28278-28297 Msa1414280:intron 25.0%
!!! TGTTTTCAGCTTATTTTCAT+TGG + tig0024109:28308-28327 None:intergenic 25.0%
! TAAGTTATGTGAGACTATTT+GGG + tig0024109:28363-28382 None:intergenic 25.0%
! ATAAGTTATGTGAGACTATT+TGG + tig0024109:28364-28383 None:intergenic 25.0%
!! CTCTTGAAATATGGTATTTT+AGG - tig0024109:28665-28684 Msa1414280:CDS 25.0%
!!! AAATATGGTATTTTAGGCAA+AGG - tig0024109:28671-28690 Msa1414280:CDS 25.0%
!!! AATATGGTATTTTAGGCAAA+GGG - tig0024109:28672-28691 Msa1414280:CDS 25.0%
!! AATATTTTGTGACCAACTTA+AGG - tig0024109:28879-28898 Msa1414280:intron 25.0%
!! ATATTTTGTGACCAACTTAA+GGG - tig0024109:28880-28899 Msa1414280:intron 25.0%
! TCGCAGTAGTAATAAAAATT+AGG - tig0024109:28917-28936 Msa1414280:intron 25.0%
! ATCTATTAGATACGATATCT+AGG + tig0024109:28951-28970 None:intergenic 25.0%
TTCACATATAGTCGAAAACT+TGG - tig0024109:23889-23908 Msa1414280:three_prime_UTR 30.0%
!!! TTCATGCTACTTTTCTTATC+AGG - tig0024109:23976-23995 Msa1414280:CDS 30.0%
! TACTTTTCTTATCAGGAAAC+AGG - tig0024109:23983-24002 Msa1414280:CDS 30.0%
GTATCAATGTCTCTCAAAAA+CGG - tig0024109:24036-24055 Msa1414280:CDS 30.0%
!! AGATTTGCTATCATTGACAT+TGG - tig0024109:24132-24151 Msa1414280:CDS 30.0%
ACAAAAATCTCAGCATACTT+TGG + tig0024109:24342-24361 None:intergenic 30.0%
TTTCTCTTGTCTAGAAAGAA+TGG - tig0024109:24361-24380 Msa1414280:intron 30.0%
!! ATTGTGTCGATTTCTATTGA+TGG - tig0024109:24466-24485 Msa1414280:intron 30.0%
CACTATTTAACAACACTGAT+TGG + tig0024109:24547-24566 None:intergenic 30.0%
! CAATCAGTGTTGTTAAATAG+TGG - tig0024109:24545-24564 Msa1414280:intron 30.0%
CAACTCTCATTGTAAAGTAA+AGG + tig0024109:24821-24840 None:intergenic 30.0%
! TGTGGATAAATTTTCCAACT+CGG + tig0024109:25119-25138 None:intergenic 30.0%
AACTCCAATTGCTTGTTTAA+AGG - tig0024109:25247-25266 Msa1414280:intron 30.0%
GCTTAATATAGTTGTTTGGA+AGG + tig0024109:25381-25400 None:intergenic 30.0%
TGGTGCTTAATATAGTTGTT+TGG + tig0024109:25385-25404 None:intergenic 30.0%
AACAACTATATTAAGCACCA+CGG - tig0024109:25385-25404 Msa1414280:intron 30.0%
! TTTATATGTGAGTTGGCTAT+CGG + tig0024109:25449-25468 None:intergenic 30.0%
AGCATTATCCCTATAAAATG+GGG + tig0024109:25524-25543 None:intergenic 30.0%
TAAGGTTGCACTATTCAAAT+TGG + tig0024109:25571-25590 None:intergenic 30.0%
TATATATTGCTGTGTTGCAA+TGG - tig0024109:25719-25738 Msa1414280:intron 30.0%
!!! TATCCTTTCAGGTTTTCAAA+AGG - tig0024109:25810-25829 Msa1414280:intron 30.0%
!! ATAAGCTTTGGAGCTTATAT+AGG - tig0024109:26173-26192 Msa1414280:intron 30.0%
AATTAATAAGCACCAACCAT+AGG + tig0024109:26213-26232 None:intergenic 30.0%
TGATTCTTAGGTTACATCAT+TGG - tig0024109:26313-26332 Msa1414280:CDS 30.0%
GATTCTTAGGTTACATCATT+GGG - tig0024109:26314-26333 Msa1414280:CDS 30.0%
TCTAAGGAAGATATTTGTGA+GGG + tig0024109:26518-26537 None:intergenic 30.0%
TAAAATTAACTCACTTGGGT+TGG - tig0024109:26692-26711 Msa1414280:intron 30.0%
CTTCATGATTTCAACAATGT+GGG + tig0024109:27058-27077 None:intergenic 30.0%
ACTTCATGATTTCAACAATG+TGG + tig0024109:27059-27078 None:intergenic 30.0%
! TTGGTTATTTCAACAATGTG+AGG + tig0024109:27085-27104 None:intergenic 30.0%
!! GCTTAGTTTAGAATTTTGGT+TGG - tig0024109:27106-27125 Msa1414280:intron 30.0%
!! CTCATAAGTCAGTTTTGTAA+GGG + tig0024109:27219-27238 None:intergenic 30.0%
!! TCTCATAAGTCAGTTTTGTA+AGG + tig0024109:27220-27239 None:intergenic 30.0%
CTCACTTATAAACACATTGT+TGG - tig0024109:27251-27270 Msa1414280:intron 30.0%
GGATTATATATCTACCAATG+TGG - tig0024109:27272-27291 Msa1414280:intron 30.0%
AAGTGTTAAAAGTTCCACAT+TGG + tig0024109:27289-27308 None:intergenic 30.0%
! ATTCAAGTTTGTTCTTGATG+AGG - tig0024109:27337-27356 Msa1414280:intron 30.0%
! TTGACTTGAGTGACAATATT+AGG - tig0024109:27411-27430 Msa1414280:intron 30.0%
!! TCTTTCTAAAAGGCCATTTT+GGG + tig0024109:27649-27668 None:intergenic 30.0%
!! TTCTTTCTAAAAGGCCATTT+TGG + tig0024109:27650-27669 None:intergenic 30.0%
!! AATGGCCTTTTAGAAAGAAA+AGG - tig0024109:27651-27670 Msa1414280:CDS 30.0%
! GAAATGTCAAATAGTCCTTT+TGG + tig0024109:27691-27710 None:intergenic 30.0%
TTTCCTTGTCTTTAGTACTT+AGG - tig0024109:27707-27726 Msa1414280:intron 30.0%
TTCCTTGTCTTTAGTACTTA+GGG - tig0024109:27708-27727 Msa1414280:intron 30.0%
!! ATGTTGGTTCATTTATGTTC+AGG - tig0024109:27797-27816 Msa1414280:intron 30.0%
!! TGTTGGTTCATTTATGTTCA+GGG - tig0024109:27798-27817 Msa1414280:intron 30.0%
ACAGATAACAGAACCAAATT+TGG + tig0024109:27830-27849 None:intergenic 30.0%
! AGTTTGCTTTGATTGTGTTA+TGG + tig0024109:27862-27881 None:intergenic 30.0%
AATGATGTTGAATACTTGCA+TGG - tig0024109:27977-27996 Msa1414280:CDS 30.0%
! TGAATACTTGCATGGAATTT+TGG - tig0024109:27985-28004 Msa1414280:CDS 30.0%
!! ATTGATTTTGTTCCAAGAAC+TGG - tig0024109:28112-28131 Msa1414280:intron 30.0%
TTAAGTTAGAAACCAGTTCT+TGG + tig0024109:28127-28146 None:intergenic 30.0%
! AAGAACTGGTTTCTAACTTA+AGG - tig0024109:28126-28145 Msa1414280:intron 30.0%
TTCTAACTTAAGGCTATGTT+TGG - tig0024109:28136-28155 Msa1414280:intron 30.0%
GAACTCATGAAAACAACTTA+CGG + tig0024109:28339-28358 None:intergenic 30.0%
TCAAACAAGTCAATCTAAAC+AGG - tig0024109:28393-28412 Msa1414280:CDS 30.0%
ACTCCAAATTCTAACTTCAT+GGG + tig0024109:28419-28438 None:intergenic 30.0%
AACTCCAAATTCTAACTTCA+TGG + tig0024109:28420-28439 None:intergenic 30.0%
!! TATTTTAGGCAAAGGGATAT+GGG - tig0024109:28679-28698 Msa1414280:CDS 30.0%
CTTATCTTCCCAAAGGATAA+GGG + tig0024109:23815-23834 None:intergenic 35.0%
TCTTATCTTCCCAAAGGATA+AGG + tig0024109:23816-23835 None:intergenic 35.0%
! CCATTTTCTTATCTTCCCAA+AGG + tig0024109:23822-23841 None:intergenic 35.0%
! CCTTTGGGAAGATAAGAAAA+TGG - tig0024109:23819-23838 Msa1414280:three_prime_UTR 35.0%
TGGGAAGATAAGAAAATGGT+AGG - tig0024109:23823-23842 Msa1414280:three_prime_UTR 35.0%
ATGTTAAAATGGTGCTTGCT+GGG + tig0024109:23867-23886 None:intergenic 35.0%
GGAAACAGGTTATTACTGTT+AGG - tig0024109:23997-24016 Msa1414280:CDS 35.0%
AGAGACATTGATACTGTTCT+TGG + tig0024109:24030-24049 None:intergenic 35.0%
AATGATAGCAAATCTTGCAC+CGG + tig0024109:24127-24146 None:intergenic 35.0%
! TTTGCTATCATTGACATTGG+TGG - tig0024109:24135-24154 Msa1414280:CDS 35.0%
GAAAATGATACCGAGTATAG+TGG + tig0024109:24192-24211 None:intergenic 35.0%
CAACTACTATCATTGTTGCT+AGG - tig0024109:24497-24516 Msa1414280:intron 35.0%
! GTGTTGTTAAATAGTGGCTA+TGG - tig0024109:24551-24570 Msa1414280:intron 35.0%
TAAAGTAAAGGTCTCCACAA+CGG + tig0024109:24809-24828 None:intergenic 35.0%
GACGGTAAAAGATGAGAATA+TGG + tig0024109:25212-25231 None:intergenic 35.0%
TCCAATTGCTTGTTTAAAGG+AGG - tig0024109:25250-25269 Msa1414280:intron 35.0%
TCCTCCTTTAAACAAGCAAT+TGG + tig0024109:25254-25273 None:intergenic 35.0%
! TTATATGTGAGTTGGCTATC+GGG + tig0024109:25448-25467 None:intergenic 35.0%
! AAGTTCCAACCCCATTTTAT+AGG - tig0024109:25512-25531 Msa1414280:intron 35.0%
! AGTTCCAACCCCATTTTATA+GGG - tig0024109:25513-25532 Msa1414280:intron 35.0%
TTATCCCTATAAAATGGGGT+TGG + tig0024109:25520-25539 None:intergenic 35.0%
!!! TTGTGCATCGATTTTACTTG+TGG + tig0024109:25677-25696 None:intergenic 35.0%
! GCATTGGATTTTCCTTAACT+TGG - tig0024109:25741-25760 Msa1414280:intron 35.0%
!! ACTCCTTTTGAAAACCTGAA+AGG + tig0024109:25816-25835 None:intergenic 35.0%
! CAAGAAATTACAGCTTTTCC+AGG + tig0024109:25901-25920 None:intergenic 35.0%
GGATGCATTTAAATACAGTG+TGG + tig0024109:26105-26124 None:intergenic 35.0%
CACTGTATTTAAATGCATCC+TGG - tig0024109:26105-26124 Msa1414280:intron 35.0%
GCATAAAAAGCTATCCACAA+TGG + tig0024109:26270-26289 None:intergenic 35.0%
ATTAAGCAACTCAAGAATCG+AGG - tig0024109:26358-26377 Msa1414280:CDS 35.0%
CAACAAGCCATTTATCATCA+AGG + tig0024109:26412-26431 None:intergenic 35.0%
! CTTGATGATAAATGGCTTGT+TGG - tig0024109:26410-26429 Msa1414280:CDS 35.0%
CAGTTTCTCTAGTTGATCAT+CGG + tig0024109:26480-26499 None:intergenic 35.0%
GTCTAAGGAAGATATTTGTG+AGG + tig0024109:26519-26538 None:intergenic 35.0%
AAAAGCTGGTGAAAGATTTC+CGG - tig0024109:26553-26572 Msa1414280:intron 35.0%
ATATAACGTGAGATGTCAAG+AGG + tig0024109:26747-26766 None:intergenic 35.0%
ATCTCACGTTATATTCTCCT+TGG - tig0024109:26753-26772 Msa1414280:intron 35.0%
GACAGGATTTCAACTTCATT+TGG + tig0024109:26910-26929 None:intergenic 35.0%
ACAACAAGATGTCCAGAATT+GGG + tig0024109:27151-27170 None:intergenic 35.0%
TACAACAAGATGTCCAGAAT+TGG + tig0024109:27152-27171 None:intergenic 35.0%
! TTCTGGACATCTTGTTGTAT+AGG - tig0024109:27153-27172 Msa1414280:intron 35.0%
! CAAAACTGACTTATGAGATG+AGG - tig0024109:27222-27241 Msa1414280:intron 35.0%
! TCATTGGAGTACTTCTCATT+TGG - tig0024109:27532-27551 Msa1414280:intron 35.0%
TCATTTGGCAATCCTTACAT+TGG - tig0024109:27547-27566 Msa1414280:intron 35.0%
!! TTAGGAGCTTTAAAAAGGAC+AGG - tig0024109:27580-27599 Msa1414280:CDS 35.0%
TTGCTTTGATTGTGTTATGG+TGG + tig0024109:27859-27878 None:intergenic 35.0%
!! AGGCTTTTAACTAACTGTGA+AGG + tig0024109:28447-28466 None:intergenic 35.0%
ATTCATCCACTAGATCCTAA+TGG - tig0024109:28636-28655 Msa1414280:intron 35.0%
!! TTTCAAGAGTGCTTACCATT+AGG + tig0024109:28654-28673 None:intergenic 35.0%
TGGTAAGCACTCTTGAAATA+TGG - tig0024109:28656-28675 Msa1414280:CDS 35.0%
!! GTATTTTAGGCAAAGGGATA+TGG - tig0024109:28678-28697 Msa1414280:CDS 35.0%
TGTGAAAACTTGATCCACTA+CGG + tig0024109:28727-28746 None:intergenic 35.0%
GAACAATGGTGGTAAAGTTG+CGG + tig0024109:23784-23803 None:intergenic 40.0%
TAAGGGAACTTCAGGAACAA+TGG + tig0024109:23798-23817 None:intergenic 40.0%
CTGAAGTTCCCTTATCCTTT+GGG - tig0024109:23804-23823 Msa1414280:three_prime_UTR 40.0%
GATGTTAAAATGGTGCTTGC+TGG + tig0024109:23868-23887 None:intergenic 40.0%
AAAAAAAGTAGTGTGGGAGC+AGG - tig0024109:24066-24085 Msa1414280:CDS 40.0%
!! GATACCGAGTATAGTGGATA+GGG + tig0024109:24186-24205 None:intergenic 40.0%
!! TGATACCGAGTATAGTGGAT+AGG + tig0024109:24187-24206 None:intergenic 40.0%
AGAATGGAGAGTCACATGAT+TGG - tig0024109:24377-24396 Msa1414280:intron 40.0%
GAATGGAGAGTCACATGATT+GGG - tig0024109:24378-24397 Msa1414280:intron 40.0%
TGTGTTTGCGAAGGTTAAGT+GGG + tig0024109:24447-24466 None:intergenic 40.0%
ATGTGTTTGCGAAGGTTAAG+TGG + tig0024109:24448-24467 None:intergenic 40.0%
TGTTATTGCACCAAGCAGAT+TGG - tig0024109:24966-24985 Msa1414280:intron 40.0%
! AAGTGGACTCATATCCATCA+TGG - tig0024109:25174-25193 Msa1414280:intron 40.0%
AAACAAGCAATTGGAGTTCC+AGG + tig0024109:25245-25264 None:intergenic 40.0%
ATCTGTACCAAGCAACACTT+TGG - tig0024109:25331-25350 Msa1414280:intron 40.0%
TCTGTACCAAGCAACACTTT+GGG - tig0024109:25332-25351 Msa1414280:intron 40.0%
!! TATTACCCCAAAGTGTTGCT+TGG + tig0024109:25341-25360 None:intergenic 40.0%
! TATATGTGAGTTGGCTATCG+GGG + tig0024109:25447-25466 None:intergenic 40.0%
! GATTTTACTTGTGGCACAAC+TGG + tig0024109:25668-25687 None:intergenic 40.0%
GCACAAGTAACACAACTTTC+TGG - tig0024109:25691-25710 Msa1414280:intron 40.0%
TTCTCATGGGAGATAAGCTT+TGG - tig0024109:26161-26180 Msa1414280:intron 40.0%
CCACAATGGTGAATCTAAAG+AGG + tig0024109:26256-26275 None:intergenic 40.0%
CCTCTTTAGATTCACCATTG+TGG - tig0024109:26253-26272 Msa1414280:CDS 40.0%
ACTCAAGAATCGAGGATTCT+CGG - tig0024109:26366-26385 Msa1414280:CDS 40.0%
! GTCATCGCCTTGATGATAAA+TGG - tig0024109:26402-26421 Msa1414280:CDS 40.0%
!! GATGATAAATGGCTTGTTGG+TGG - tig0024109:26413-26432 Msa1414280:CDS 40.0%
! GGAAATCTTTCACCAGCTTT+TGG + tig0024109:26554-26573 None:intergenic 40.0%
AATGGATCCATTCAGTACCT+TGG + tig0024109:26599-26618 None:intergenic 40.0%
! TTGGCATGATGATGTTGACT+TGG - tig0024109:26711-26730 Msa1414280:intron 40.0%
!! TGGCATGATGATGTTGACTT+GGG - tig0024109:26712-26731 Msa1414280:intron 40.0%
!! ATTGGATCCCTTGGATTAGT+CGG - tig0024109:26822-26841 Msa1414280:intron 40.0%
CTTAAGACCGACTAATCCAA+GGG + tig0024109:26832-26851 None:intergenic 40.0%
CAATGTGGGAACTTATGCTT+TGG + tig0024109:27044-27063 None:intergenic 40.0%
ATGTCCAGAATTGGGCATAA+GGG + tig0024109:27143-27162 None:intergenic 40.0%
TTTCTTGAGAAGTCACCGTT+AGG - tig0024109:27444-27463 Msa1414280:intron 40.0%
!!! CCATTTTGGGACACTTGTTA+AGG + tig0024109:27636-27655 None:intergenic 40.0%
CCTTAACAAGTGTCCCAAAA+TGG - tig0024109:27633-27652 Msa1414280:CDS 40.0%
AGCCCTAAGTACTAAAGACA+AGG + tig0024109:27713-27732 None:intergenic 40.0%
TTCAGGGACAAAGCCAAATT+TGG - tig0024109:27814-27833 Msa1414280:CDS 40.0%
!! TGGAATTTGATTTTCTGGGC+AGG - tig0024109:27936-27955 Msa1414280:CDS 40.0%
! TCAACATCATTTTCTGGACG+TGG + tig0024109:27968-27987 None:intergenic 40.0%
TCTTACCTCTATACGTGCAA+TGG + tig0024109:28014-28033 None:intergenic 40.0%
AGGCCCATGAAGTTAGAATT+TGG - tig0024109:28413-28432 Msa1414280:CDS 40.0%
TGCTTACCATTAGGATCTAG+TGG + tig0024109:28645-28664 None:intergenic 40.0%
! AAAGGGATATGGGTTGCTAA+AGG - tig0024109:28689-28708 Msa1414280:CDS 40.0%
! TATGGGTTGCTAAAGGATCT+AGG - tig0024109:28696-28715 Msa1414280:CDS 40.0%
AGTGGACAAAGATACGAGAA+AGG - tig0024109:28772-28791 Msa1414280:CDS 40.0%
GTGGACAAAGATACGAGAAA+GGG - tig0024109:28773-28792 Msa1414280:CDS 40.0%
AACCAAACAGAAGCTGCATA+CGG - tig0024109:28822-28841 Msa1414280:CDS 40.0%
AACTGCATTGTTGGCAATGA+AGG - tig0024109:28845-28864 Msa1414280:intron 40.0%
ACTGCATTGTTGGCAATGAA+GGG - tig0024109:28846-28865 Msa1414280:intron 40.0%
TGATGCATTTGCCCTTAAGT+TGG + tig0024109:28894-28913 None:intergenic 40.0%
CCAAAGGATAAGGGAACTTC+AGG + tig0024109:23806-23825 None:intergenic 45.0%
CCTGAAGTTCCCTTATCCTT+TGG - tig0024109:23803-23822 Msa1414280:three_prime_UTR 45.0%
! TAAAATGGTGCTTGCTGGGT+GGG + tig0024109:23863-23882 None:intergenic 45.0%
! TTAAAATGGTGCTTGCTGGG+TGG + tig0024109:23864-23883 None:intergenic 45.0%
TCGACACAATGTGTTTGCGA+AGG + tig0024109:24456-24475 None:intergenic 45.0%
ATGTTGTACTGCAGTGACAC+AGG - tig0024109:24779-24798 Msa1414280:intron 45.0%
TTTACAGCAGGTAGTGCATC+AGG + tig0024109:24845-24864 None:intergenic 45.0%
!! GGTGCAATGGATTTTACAGC+AGG + tig0024109:24857-24876 None:intergenic 45.0%
! TGTATGGTTTGGAGGTGCAA+TGG + tig0024109:24870-24889 None:intergenic 45.0%
! GAGCATACTGTATGGTTTGG+AGG + tig0024109:24878-24897 None:intergenic 45.0%
GCAGAGCATACTGTATGGTT+TGG + tig0024109:24881-24900 None:intergenic 45.0%
ACGATGCAGAGCATACTGTA+TGG + tig0024109:24886-24905 None:intergenic 45.0%
!!! ACCAAGCAGATTGGCTTTTG+TGG - tig0024109:24975-24994 Msa1414280:intron 45.0%
! TGGCTTTTGTGGCTTCTTCA+TGG - tig0024109:24986-25005 Msa1414280:intron 45.0%
TGGCTTCTTCATGGAAAGCT+TGG - tig0024109:24995-25014 Msa1414280:intron 45.0%
GATGGATATGAGTCCACTTC+AGG + tig0024109:25173-25192 None:intergenic 45.0%
CTGTACCAAGCAACACTTTG+GGG - tig0024109:25333-25352 Msa1414280:intron 45.0%
TCAAGTCTCAACGCTCAAGA+AGG + tig0024109:25624-25643 None:intergenic 45.0%
CTTGTGGCACAACTGGAATT+TGG + tig0024109:25661-25680 None:intergenic 45.0%
TTGCTGTGTTGCAATGGCAT+TGG - tig0024109:25725-25744 Msa1414280:intron 45.0%
TACACGGTGCATATCCTTTC+AGG - tig0024109:25799-25818 Msa1414280:intron 45.0%
! AAGGAGTGTGTTGTATGCAC+CGG - tig0024109:25829-25848 Msa1414280:intron 45.0%
AGCTATACTGTCAGTGGTTC+CGG + tig0024109:25851-25870 None:intergenic 45.0%
AAACGCAGCTATACTGTCAG+TGG + tig0024109:25857-25876 None:intergenic 45.0%
AATGCTCTGTGGTCTTCTCA+TGG - tig0024109:26147-26166 Msa1414280:intron 45.0%
ATGCTCTGTGGTCTTCTCAT+GGG - tig0024109:26148-26167 Msa1414280:intron 45.0%
CCAACCATAGGAACGAACAA+AGG + tig0024109:26201-26220 None:intergenic 45.0%
CCTTTGTTCGTTCCTATGGT+TGG - tig0024109:26198-26217 Msa1414280:intron 45.0%
!! TAAAGAGGTGCTTGGCCTTA+AGG + tig0024109:26241-26260 None:intergenic 45.0%
!! GGTGAATCTAAAGAGGTGCT+TGG + tig0024109:26249-26268 None:intergenic 45.0%
AGAATCGAGGATTCTCGGTT+TGG - tig0024109:26371-26390 Msa1414280:CDS 45.0%
GAATCGAGGATTCTCGGTTT+GGG - tig0024109:26372-26391 Msa1414280:CDS 45.0%
! AATCGAGGATTCTCGGTTTG+GGG - tig0024109:26373-26392 Msa1414280:CDS 45.0%
!! GTTGGTGGTGCTTCAAATAC+TGG - tig0024109:26428-26447 Msa1414280:CDS 45.0%
TGGCAGAGGATAGTAGTCTA+AGG + tig0024109:26534-26553 None:intergenic 45.0%
TACTATCCTCTGCCAAAAGC+TGG - tig0024109:26539-26558 Msa1414280:intron 45.0%
!! TTTGGCTCCAAGGTACTGAA+TGG - tig0024109:26589-26608 Msa1414280:intron 45.0%
! GGATCCATTTTGCTCTCTGT+TGG - tig0024109:26610-26629 Msa1414280:intron 45.0%
CGTTCCAACAGAGAGCAAAA+TGG + tig0024109:26617-26636 None:intergenic 45.0%
!! TCCTTGGTGCCAATTTCGTT+GGG - tig0024109:26769-26788 Msa1414280:intron 45.0%
!! AAGGACTAGCCCAACGAAAT+TGG + tig0024109:26781-26800 None:intergenic 45.0%
TTAACCTGCAAGTGGACGAT+GGG - tig0024109:26799-26818 Msa1414280:intron 45.0%
GCTTAAGACCGACTAATCCA+AGG + tig0024109:26833-26852 None:intergenic 45.0%
!! TGGATTAGTCGGTCTTAAGC+CGG - tig0024109:26833-26852 Msa1414280:intron 45.0%
TGTGGGAACTTATGCTTTGG+AGG + tig0024109:27041-27060 None:intergenic 45.0%
TCAACCCTTATGCCCAATTC+TGG - tig0024109:27136-27155 Msa1414280:intron 45.0%
GATGTCCAGAATTGGGCATA+AGG + tig0024109:27144-27163 None:intergenic 45.0%
GGAATCCATTGCACGTATAG+AGG - tig0024109:28006-28025 Msa1414280:CDS 45.0%
! GTGGATCAAGTTTTCACAGC+CGG - tig0024109:28729-28748 Msa1414280:CDS 45.0%
GAGGAGCGAAAAATGAGAAG+TGG - tig0024109:28754-28773 Msa1414280:CDS 45.0%
!! AAGATACGAGAAAGGGTGCT+TGG - tig0024109:28780-28799 Msa1414280:CDS 45.0%
TTCCGTATGCAGCTTCTGTT+TGG + tig0024109:28827-28846 None:intergenic 45.0%
TGCATACGGAACTGCATTGT+TGG - tig0024109:28836-28855 Msa1414280:intron 45.0%
!!! TTTTTTTTTTTTTTAAAACT+CGG + tig0024109:26862-26881 None:intergenic 5.0%
TGGTGGTAAAGTTGCGGACT+GGG + tig0024109:23778-23797 None:intergenic 50.0%
ATGGTGGTAAAGTTGCGGAC+TGG + tig0024109:23779-23798 None:intergenic 50.0%
GGGAACTTCAGGAACAATGG+TGG + tig0024109:23795-23814 None:intergenic 50.0%
GCAGGTGAAAGGCTGTATCT+CGG - tig0024109:24084-24103 Msa1414280:CDS 50.0%
CAGGTGAAAGGCTGTATCTC+GGG - tig0024109:24085-24104 Msa1414280:CDS 50.0%
TGAAAGGCTGTATCTCGGGT+TGG - tig0024109:24089-24108 Msa1414280:CDS 50.0%
!! CTGTATCTCGGGTTGGACTT+TGG - tig0024109:24096-24115 Msa1414280:CDS 50.0%
GCGACCCTATCCACTATACT+CGG - tig0024109:24179-24198 Msa1414280:intron 50.0%
CTCTGTGTAAGCTCGTGTCA+TGG - tig0024109:24909-24928 Msa1414280:intron 50.0%
TGTGTAAGCTCGTGTCATGG+TGG - tig0024109:24912-24931 Msa1414280:intron 50.0%
! GTGTCATGGTGGAATCGTGA+TGG - tig0024109:24923-24942 Msa1414280:intron 50.0%
GCCACAAAAGCCAATCTGCT+TGG + tig0024109:24979-24998 None:intergenic 50.0%
CTCTGTTGCGATATCCGAGT+TGG - tig0024109:25102-25121 Msa1414280:intron 50.0%
GGTTGGGTATGATCCTGAAG+TGG - tig0024109:25157-25176 Msa1414280:intron 50.0%
! GGTTGAGAGACTAGCCATGA+TGG + tig0024109:25191-25210 None:intergenic 50.0%
TGGAGTTCCAGGTGCAAGAA+CGG + tig0024109:25234-25253 None:intergenic 50.0%
GCGTTGAGACTTGAGACACA+CGG - tig0024109:25630-25649 Msa1414280:intron 50.0%
GGCTCCTTTGTTCGTTCCTA+TGG - tig0024109:26194-26213 Msa1414280:intron 50.0%
GGTGGTGCTTCAAATACTGG+AGG - tig0024109:26431-26450 Msa1414280:CDS 50.0%
! CTTTCACCAGCTTTTGGCAG+AGG + tig0024109:26548-26567 None:intergenic 50.0%
TCCGGTTGCAGATCCAGATT+TGG - tig0024109:26571-26590 Msa1414280:intron 50.0%
GCCAAATCTGGATCTGCAAC+CGG + tig0024109:26575-26594 None:intergenic 50.0%
! CAGATCCAGATTTGGCTCCA+AGG - tig0024109:26579-26598 Msa1414280:intron 50.0%
CAGTACCTTGGAGCCAAATC+TGG + tig0024109:26587-26606 None:intergenic 50.0%
!! CTCCTTGGTGCCAATTTCGT+TGG - tig0024109:26768-26787 Msa1414280:intron 50.0%
GCTAGTCCTTAACCTGCAAG+TGG - tig0024109:26791-26810 Msa1414280:intron 50.0%
CATCGTCCACTTGCAGGTTA+AGG + tig0024109:26800-26819 None:intergenic 50.0%
CTTAACCTGCAAGTGGACGA+TGG - tig0024109:26798-26817 Msa1414280:intron 50.0%
! GATCAAGTTTTCACAGCCGG+TGG - tig0024109:28732-28751 Msa1414280:CDS 50.0%
!! CTCATTTTTCGCTCCTCCAC+CGG + tig0024109:28751-28770 None:intergenic 50.0%
!! GTTTGGTTTGCACGACTCAC+AGG + tig0024109:28810-28829 None:intergenic 50.0%
!! GCGGACTGGGAGCGAAAAAA+AGG + tig0024109:23765-23784 None:intergenic 55.0%
GTAGTGTGGGAGCAGGTGAA+AGG - tig0024109:24073-24092 Msa1414280:CDS 55.0%
GGGTTGGACTTTGGCACTTC+CGG - tig0024109:24105-24124 Msa1414280:CDS 55.0%
TGGTGGCACAATTCAAGCCG+AGG - tig0024109:24152-24171 Msa1414280:intron 55.0%
! TGGATAGGGTCGCTTTGCCT+CGG + tig0024109:24172-24191 None:intergenic 55.0%
CACATGATTGGGTACGCTCG+TGG - tig0024109:24389-24408 Msa1414280:intron 55.0%
GTGACACAGGAGAACCGTTG+TGG - tig0024109:24792-24811 Msa1414280:intron 55.0%
TTACCGTCCGTTCTTGCACC+TGG - tig0024109:25224-25243 Msa1414280:intron 55.0%
GTTCCAGGTGCAAGAACGGA+CGG + tig0024109:25230-25249 None:intergenic 55.0%
GCCCAACGAAATTGGCACCA+AGG + tig0024109:26773-26792 None:intergenic 55.0%
CAATCCCATCGTCCACTTGC+AGG + tig0024109:26806-26825 None:intergenic 55.0%
CTGCAAGTGGACGATGGGAT+TGG - tig0024109:26804-26823 Msa1414280:intron 55.0%
GACGATGGGATTGGATCCCT+TGG - tig0024109:26813-26832 Msa1414280:intron 55.0%
GGATCTAGGTGCAACCGTAG+TGG - tig0024109:28710-28729 Msa1414280:CDS 55.0%
! CAAGTTTTCACAGCCGGTGG+AGG - tig0024109:28735-28754 Msa1414280:CDS 55.0%
! GCAGCTCGTGCTACTCAACC+TGG - tig0024109:25880-25899 Msa1414280:intron 60.0%
CGCTCTCTGAGCCTTGAGCC+TGG - tig0024109:25412-25431 Msa1414280:intron 65.0%
TCTGAGCCTTGAGCCTGGCC+TGG - tig0024109:25417-25436 Msa1414280:intron 65.0%
GTTGGCTATCGGGGCTCACC+AGG + tig0024109:25438-25457 None:intergenic 65.0%
!! GGCTCAGAGAGCGCTGACCG+TGG + tig0024109:25405-25424 None:intergenic 70.0%
GGCTCACCAGGCCAGGCTCA+AGG + tig0024109:25426-25445 None:intergenic 70.0%
CTATCGGGGCTCACCAGGCC+AGG + tig0024109:25433-25452 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0024109 gene 23750 29099 23750 ID=Msa1414280;Name=Msa1414280
tig0024109 mRNA 23750 29099 23750 ID=Msa1414280-mRNA-1;Parent=Msa1414280;Name=Msa1414280-mRNA-1;_AED=0.21;_eAED=0.21;_QI=88|1|1|1|1|1|9|209|480
tig0024109 exon 23750 24162 23750 ID=Msa1414280-mRNA-1:exon:21724;Parent=Msa1414280-mRNA-1
tig0024109 exon 24822 24891 24822 ID=Msa1414280-mRNA-1:exon:21723;Parent=Msa1414280-mRNA-1
tig0024109 exon 26249 26526 26249 ID=Msa1414280-mRNA-1:exon:21722;Parent=Msa1414280-mRNA-1
tig0024109 exon 26940 27028 26940 ID=Msa1414280-mRNA-1:exon:21721;Parent=Msa1414280-mRNA-1
tig0024109 exon 27559 27691 27559 ID=Msa1414280-mRNA-1:exon:21720;Parent=Msa1414280-mRNA-1
tig0024109 exon 27804 28056 27804 ID=Msa1414280-mRNA-1:exon:21719;Parent=Msa1414280-mRNA-1
tig0024109 exon 28331 28470 28331 ID=Msa1414280-mRNA-1:exon:21718;Parent=Msa1414280-mRNA-1
tig0024109 exon 28649 28851 28649 ID=Msa1414280-mRNA-1:exon:21717;Parent=Msa1414280-mRNA-1
tig0024109 exon 28939 29099 28939 ID=Msa1414280-mRNA-1:exon:21716;Parent=Msa1414280-mRNA-1
tig0024109 five_prime_UTR 29012 29099 29012 ID=Msa1414280-mRNA-1:five_prime_utr;Parent=Msa1414280-mRNA-1
tig0024109 CDS 28939 29011 28939 ID=Msa1414280-mRNA-1:cds;Parent=Msa1414280-mRNA-1
tig0024109 CDS 28649 28851 28649 ID=Msa1414280-mRNA-1:cds;Parent=Msa1414280-mRNA-1
tig0024109 CDS 28331 28470 28331 ID=Msa1414280-mRNA-1:cds;Parent=Msa1414280-mRNA-1
tig0024109 CDS 27804 28056 27804 ID=Msa1414280-mRNA-1:cds;Parent=Msa1414280-mRNA-1
tig0024109 CDS 27559 27691 27559 ID=Msa1414280-mRNA-1:cds;Parent=Msa1414280-mRNA-1
tig0024109 CDS 26940 27028 26940 ID=Msa1414280-mRNA-1:cds;Parent=Msa1414280-mRNA-1
tig0024109 CDS 26249 26526 26249 ID=Msa1414280-mRNA-1:cds;Parent=Msa1414280-mRNA-1
tig0024109 CDS 24822 24891 24822 ID=Msa1414280-mRNA-1:cds;Parent=Msa1414280-mRNA-1
tig0024109 CDS 23959 24162 23959 ID=Msa1414280-mRNA-1:cds;Parent=Msa1414280-mRNA-1
tig0024109 three_prime_UTR 23750 23958 23750 ID=Msa1414280-mRNA-1:three_prime_utr;Parent=Msa1414280-mRNA-1
Gene Sequence

>Msa1414280

ATGGTAGGCACTGTTTCAGTAACCCACCCAGCAAGCACCATTTTAACATCTTTCACATATAGTCGAAAACTTGGAAACAGGTTATTACTGTTAGGTAACAAACCAAGAACAGTATCAATGTCTCTCAAAAACGGAGATAACAAAAAAAGTAGTGTGGGAGCAGGTGAAAGGCTGTATCTCGGGTTGGACTTTGGCACTTCCGGTGCAAGATTTGCTATCATTGACATTGGTGGCACAATTCAAGCCGAGGCAAAGCGACCCTATCCACTATACTCGAATGGAGAGTCACATGATTGGGTACGCTCGTGGAAAGAGACACTTTTTTTGTTGCTTGAAGATATCCCACTTAACCTTCGCAAACACATTGTGTCGATTTCTATTGATGGCACATCTGCAACTACTATCATTGTTGCTAGTGACACAGGAGAACCGTTGTGGAGACCTTTACTTTACAATGAGAGTTGTCCTGATGCACTACCTGCTGTAAAATCCATTGCACCTCCAAACCATACAGTATGCTCTGCATCGTCGACTCTGTGTAAGCTCGTGTCATGGTGGAATCGTGATGGTTCAAACAAAAAATCTGCTCTGTTATTGCACCAAGCAGATTGGCTTTTGTGGCTTCTTCATGGAAAGCTTGGAGTTTCAGATTATAATAATGCTCTGAAGGTTGGGTATGATCCTGAAGTGGACTCATATCCATCATGGCTAGTCTCTCAACCATATTCTCATCTTTTACCGTCCGTTCTTGCACCTGGAACTCCAATTGCTTGTTTAAAGGAGGAACTTAGAAATAAATTTGGTTTTCAAAAGGAGTGTGTTGTATGCACCGGAACCACTGACAGTATAGCTGCGTTTCTTGCAGCTCGTGCTACTCAACCTGGAAAAGCTGTTACATCATTGGGTTCAACACTTGCTATTAAACTATTAAGCAACTCAAGAATCGAGGATTCTCGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAATGGCTTGTTGGTGGTGCTTCAAATACTGGAGGAGTTGTTCTTAGACAGCTTTTCACCGATGATCAACTAGAGAAACTGAGTGAACAAATCAATCCCTCACAAATATCTTCCTTAGACTACTATCCTCTGCCAAAAGCTGGTGAAAGATTTCCGGTTGCAGATCCAGATTTGGCTCCAAGGCTACTTCCACGTCCAGAAAATGATGTTGAATACTTGCATGGAATTTTGGAATCCATTGCACGTATAGAGGCAAAGGGATATGGGTTGCTAAAGGATCTAGGTGCAACCGTAGTGGATCAAGTTTTCACAGCCGGTGGAGGAGCGAAAAATGAGAAGTGGACAAAGATACGAGAAAGGGTGCTTGGTTTACCTGTGAGTCGTGCAAACCAAACAGAAGCTGCATACGGAACTGCATTGTTGGCAATGAAGGGTGATCAACAAAATATTTTGTGA

Protein sequence

>Msa1414280

MVGTVSVTHPASTILTSFTYSRKLGNRLLLLGNKPRTVSMSLKNGDNKKSSVGAGERLYLGLDFGTSGARFAIIDIGGTIQAEAKRPYPLYSNGESHDWVRSWKETLFLLLEDIPLNLRKHIVSISIDGTSATTIIVASDTGEPLWRPLLYNESCPDALPAVKSIAPPNHTVCSASSTLCKLVSWWNRDGSNKKSALLLHQADWLLWLLHGKLGVSDYNNALKVGYDPEVDSYPSWLVSQPYSHLLPSVLAPGTPIACLKEELRNKFGFQKECVVCTGTTDSIAAFLAARATQPGKAVTSLGSTLAIKLLSNSRIEDSRFGVYSHRLDDKWLVGGASNTGGVVLRQLFTDDQLEKLSEQINPSQISSLDYYPLPKAGERFPVADPDLAPRLLPRPENDVEYLHGILESIARIEAKGYGLLKDLGATVVDQVFTAGGGAKNEKWTKIRERVLGLPVSRANQTEAAYGTALLAMKGDQQNIL*