AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0195850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0195850 MtrunA17_Chr2g0287211 94.393 428 5 1 1 409 1 428 0.0 829
Msa0195850 MtrunA17_Chr2g0287181 90.654 428 21 1 1 409 1 428 0.0 801
Msa0195850 MtrunA17_Chr6g0479141 73.596 356 75 1 57 393 1 356 0.0 562
Msa0195850 MtrunA17_Chr3g0110261 73.876 356 74 1 57 393 1 356 0.0 561
Msa0195850 MtrunA17_Chr5g0434471 70.255 353 86 1 60 393 5 357 0.0 535
Msa0195850 MtrunA17_Chr8g0364341 83.636 55 9 0 289 343 9 63 1.67e-26 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0195850 AT5G35630.3 77.494 431 74 4 1 409 1 430 0.0 687
Msa0195850 AT5G35630.2 77.494 431 74 4 1 409 1 430 0.0 687
Msa0195850 AT5G35630.1 77.494 431 74 4 1 409 1 430 0.0 687
Msa0195850 AT5G37600.1 74.438 356 72 1 57 393 1 356 0.0 566
Msa0195850 AT5G16570.1 74.438 356 72 1 57 393 1 356 0.0 564
Msa0195850 AT1G66200.1 75.000 356 70 1 57 393 1 356 0.0 563
Msa0195850 AT1G66200.3 73.151 365 70 2 57 393 1 365 0.0 556
Msa0195850 AT3G17820.1 71.955 353 80 1 57 390 1 353 0.0 543
Msa0195850 AT1G48470.1 70.414 338 81 1 72 390 16 353 0.0 519
Msa0195850 AT1G66200.2 72.222 252 51 1 57 289 1 252 1.22e-133 384
Msa0195850 AT5G16570.2 70.293 239 52 1 57 276 1 239 1.60e-123 358

Find 147 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTCTTGGTGCTCTTTA+AGG 0.126003 2_1:-12804402 Msa0195850:five_prime_UTR
GCAGAACATGGCACAGATTT+TGG 0.155664 2_1:-12803114 Msa0195850:intron
GGTTGAGGATTTACTTAATT+TGG 0.180473 2_1:-12802931 Msa0195850:CDS
CCGCGGTGGTAACAACATTT+TGG 0.220354 2_1:-12802147 Msa0195850:intron
CTCACCTTTGCCATTCTTCT+CGG 0.229339 2_1:+12800326 None:intergenic
TTGAAGCTGGTGATCATATC+TGG 0.250556 2_1:-12801159 Msa0195850:CDS
TATAGTACCTCAATTGGTTT+TGG 0.253546 2_1:+12800871 None:intergenic
ATATGTGGTGACAGCCTTAT+TGG 0.284085 2_1:-12800053 Msa0195850:CDS
CACAACTCTCACACTCTATA+TGG 0.285360 2_1:-12804307 Msa0195850:five_prime_UTR
AGTCTAAATCTATTGATTAA+TGG 0.290344 2_1:-12799960 Msa0195850:exon
GCCCCGGCGGCGCAGTAATA+AGG 0.290627 2_1:+12801583 None:intergenic
GCTTTATGTCTCTTATTTGT+AGG 0.306213 2_1:+12801996 None:intergenic
CTTCTCTTGGTGCTCTTTAA+GGG 0.310657 2_1:-12804401 Msa0195850:five_prime_UTR
ATCAAAGATGTGGAGTTCTT+TGG 0.311844 2_1:-12803030 Msa0195850:CDS
TGCTGCAGTTTGTGAGGTGC+TGG 0.317755 2_1:-12799928 Msa0195850:three_prime_UTR
TTCACCGAGGACATTTATAA+TGG 0.329802 2_1:-12799647 Msa0195850:three_prime_UTR
TATATTATGAAGATATTGTT+TGG 0.331941 2_1:-12799875 Msa0195850:three_prime_UTR
CATAATATAATAAATCTAAA+TGG 0.338711 2_1:+12799889 None:intergenic
AGCTCAGAGGGATGCTCAAC+AGG 0.340393 2_1:+12802357 None:intergenic
AAAGCTGCAAACTTTGGAAA+TGG 0.342244 2_1:+12804248 None:intergenic
CAGGATGTCACACCAATTAC+AGG 0.343535 2_1:-12800759 Msa0195850:intron
GGAATTTCAGCCTCAACCTT+TGG 0.352234 2_1:+12801954 None:intergenic
TGGCCTGTTGGTGGCTATCC+TGG 0.366008 2_1:-12801711 Msa0195850:CDS
TAATGTACTCTCTGCCAATA+AGG 0.366195 2_1:+12800039 None:intergenic
TTTCACATCTGTTTGAAGTA+AGG 0.375190 2_1:+12801746 None:intergenic
TCAACTCTGGCACCATCAAC+AGG 0.381942 2_1:-12802953 Msa0195850:CDS
GAATTTCAGCCTCAACCTTT+GGG 0.391287 2_1:+12801955 None:intergenic
AATAAGGCTGTCACCACATA+TGG 0.395016 2_1:+12800055 None:intergenic
TGTCTTGATTGCAGGTTACT+TGG 0.398318 2_1:-12800107 Msa0195850:intron
TAAATCCTCAACCCTGTTGA+TGG 0.404683 2_1:+12802941 None:intergenic
AAGCATTATAGTACCTCAAT+TGG 0.404986 2_1:+12800865 None:intergenic
GGAAATGAGAGAAGGTTGAC+AGG 0.416285 2_1:-12800538 Msa0195850:CDS
GGTCCTTATTACTGCGCCGC+CGG 0.416746 2_1:-12801586 Msa0195850:CDS
CTTGTCTGACATTGTGTAGA+AGG 0.424180 2_1:+12803089 None:intergenic
ACAGATGTGAAATGGCCATT+AGG 0.428436 2_1:-12801735 Msa0195850:CDS
GTCCTTATTACTGCGCCGCC+GGG 0.429665 2_1:-12801585 Msa0195850:CDS
ATGCTCAACAGGCTTTGATA+TGG 0.434596 2_1:+12802368 None:intergenic
GTGAGAGTTGTGTAAAATAA+AGG 0.435343 2_1:+12804318 None:intergenic
GTGATCATATCTGGGCTTCA+AGG 0.435881 2_1:-12801150 Msa0195850:CDS
GCATAATTGCTGAGTACATC+TGG 0.436205 2_1:-12802887 Msa0195850:intron
GAGGGAAGATGGAGGGTTTG+AGG 0.436712 2_1:-12800626 Msa0195850:CDS
TGAAACAGGATTGGTGGAAC+AGG 0.436884 2_1:-12802534 Msa0195850:intron
AAGCTGCAAACTTTGGAAAT+GGG 0.438166 2_1:+12804249 None:intergenic
TACTTCAAACAGATGTGAAA+TGG 0.440857 2_1:-12801743 Msa0195850:CDS
GCCGGGGCAGATAAGTCATT+TGG 0.440872 2_1:-12801568 Msa0195850:CDS
TACAAGGCTTGCTTATATGC+TGG 0.449645 2_1:-12801523 Msa0195850:CDS
ACAAAGAGCATGAGGGAAGA+TGG 0.452148 2_1:-12800637 Msa0195850:CDS
CTTTATGTCTCTTATTTGTA+GGG 0.456048 2_1:+12801997 None:intergenic
TTTAACCTTGACAGGGCGAT+TGG 0.463470 2_1:-12800789 Msa0195850:intron
TGTCTCTTATTTGTAGGGAT+AGG 0.465641 2_1:+12802002 None:intergenic
TTATAAGTCCAAGCTTCTCT+TGG 0.474113 2_1:-12804414 Msa0195850:five_prime_UTR
GCAATTATGCTGTCAGTGAA+TGG 0.479383 2_1:+12802900 None:intergenic
GGCAGAGAGTACATTATTGT+GGG 0.479550 2_1:-12800032 Msa0195850:CDS
CCACCAACAGGCCAACCTAA+TGG 0.483275 2_1:+12801720 None:intergenic
CTTCCTAAGTGGAACTATGA+TGG 0.483826 2_1:-12802336 Msa0195850:CDS
CAATGTGAACCTTGTGGCGA+AGG 0.487159 2_1:+12800575 None:intergenic
AAGGTTCACATTGAAGCATA+TGG 0.487181 2_1:-12800565 Msa0195850:CDS
GGCTGTGTTTGCATGTGGTA+TGG 0.491287 2_1:-12799783 Msa0195850:three_prime_UTR
TTGCAGGTTACTTGGAAGAC+AGG 0.494206 2_1:-12800099 Msa0195850:intron
TGGTGGCTATCCTGGTCCTC+AGG 0.500616 2_1:-12801703 Msa0195850:intron
CCATTAGGTTGGCCTGTTGG+TGG 0.503990 2_1:-12801720 Msa0195850:CDS
GGACCAGGATAGCCACCAAC+AGG 0.504091 2_1:+12801708 None:intergenic
CAGGCGTCCGGCTTCAAACA+TGG 0.506417 2_1:-12800080 Msa0195850:CDS
TGGCAGAGAGTACATTATTG+TGG 0.507952 2_1:-12800033 Msa0195850:CDS
AGGCTGCCATGCCTAGTCAT+TGG 0.511575 2_1:-12799845 Msa0195850:three_prime_UTR
AGAGTAATGGCAATCAACTC+TGG 0.512452 2_1:-12802966 Msa0195850:CDS
GTGGCTATTGTAATAACGAT+AGG 0.514602 2_1:+12804344 None:intergenic
TTCTGCTAAATTCAGAGTAA+TGG 0.515964 2_1:-12802979 Msa0195850:CDS
TGGCTATTGTAATAACGATA+GGG 0.520039 2_1:+12804345 None:intergenic
CTTCAGTAACCCAAAGGTTG+AGG 0.530081 2_1:-12801964 Msa0195850:CDS
GCTGCAGTTTGTGAGGTGCT+GGG 0.533336 2_1:-12799927 Msa0195850:three_prime_UTR
GGAAGAGACACCGAGAAGAA+TGG 0.536053 2_1:-12800336 Msa0195850:CDS
CTCCACATCTTTGATGAGAT+CGG 0.538614 2_1:+12803038 None:intergenic
CCTTGACAGGGCGATTGGAA+TGG 0.539038 2_1:-12800784 Msa0195850:intron
TGATGAGATCGGAGTTGCAA+GGG 0.539695 2_1:+12803049 None:intergenic
TTACTTGGAAGACAGGCGTC+CGG 0.542791 2_1:-12800092 Msa0195850:CDS
TCTCGGTGTCTCTTCCCACA+CGG 0.544625 2_1:+12800343 None:intergenic
GAACCTTTCCCTTCGCCACA+AGG 0.547634 2_1:-12800584 Msa0195850:CDS
TTGAATAGCTTCTCTTTCTG+AGG 0.548315 2_1:+12799673 None:intergenic
TGGCACCATCAACAGGGTTG+AGG 0.550831 2_1:-12802946 Msa0195850:CDS
GGATCTTTGAAAATTGCTTG+AGG 0.551311 2_1:+12802173 None:intergenic
TCTAGCACTGGACAAGCCCC+TGG 0.553808 2_1:-12802312 Msa0195850:CDS
TGAAGCTGGTGATCATATCT+GGG 0.554602 2_1:-12801158 Msa0195850:CDS
TTGATGAGATCGGAGTTGCA+AGG 0.555124 2_1:+12803048 None:intergenic
TATTCCATTATAAATGTCCT+CGG 0.556627 2_1:+12799643 None:intergenic
ATCACTTCACTATCTTCACC+AGG 0.558839 2_1:+12802294 None:intergenic
CACATTGAAGCATATGGAGA+AGG 0.559868 2_1:-12800559 Msa0195850:CDS
AACTATGATGGATCTAGCAC+TGG 0.560911 2_1:-12802324 Msa0195850:CDS
GATCCATCATAGTTCCACTT+AGG 0.563451 2_1:+12802333 None:intergenic
CCTTGATCCAAAACCAATTG+AGG 0.564795 2_1:-12800878 Msa0195850:intron
TATATCTGATGCTCATTACA+AGG 0.567381 2_1:-12801539 Msa0195850:CDS
AGAGCTTCAGCCTCTAGAGT+TGG 0.568683 2_1:+12800007 None:intergenic
AAAGAGCACCAAGAGAAGCT+TGG 0.568886 2_1:+12804406 None:intergenic
TTGTATATCAGATATTTCGT+TGG 0.569347 2_1:-12799804 Msa0195850:three_prime_UTR
TTCAAACATGGATCCATATG+TGG 0.574208 2_1:-12800068 Msa0195850:CDS
AGGGTTTGAGGTAATAAAGA+AGG 0.575169 2_1:-12800614 Msa0195850:CDS
CTCCGATCTCATCAAAGATG+TGG 0.575385 2_1:-12803040 Msa0195850:CDS
GAACCTTGTGGCGAAGGGAA+AGG 0.577024 2_1:+12800581 None:intergenic
TGGCCATTAGGTTGGCCTGT+TGG 0.578206 2_1:-12801723 Msa0195850:CDS
TATGGATCCATGTTTGAAGC+CGG 0.582314 2_1:+12800073 None:intergenic
ATGGAGAAGGAAATGAGAGA+AGG 0.582440 2_1:-12800546 Msa0195850:CDS
ACCAAATGACTTATCTGCCC+CGG 0.584020 2_1:+12801567 None:intergenic
AATGGTATTACCTGAGGACC+AGG 0.584702 2_1:+12801693 None:intergenic
CAGCACTGCTGCAGTTTGTG+AGG 0.584949 2_1:-12799934 Msa0195850:three_prime_UTR
CCAAGAAAATGTGTTGATGC+TGG 0.585913 2_1:+12800501 None:intergenic
TTGTGTAAAATAAAGGTTGG+TGG 0.586378 2_1:+12804325 None:intergenic
ATGTGAAATGGCCATTAGGT+TGG 0.587256 2_1:-12801731 Msa0195850:CDS
AATGTGAACCTTGTGGCGAA+GGG 0.589750 2_1:+12800576 None:intergenic
TCATAACCAATGACTAGGCA+TGG 0.596208 2_1:+12799839 None:intergenic
CAGGGCGATTGGAATGGTGC+AGG 0.596483 2_1:-12800778 Msa0195850:CDS
ATCCCTCTGAGCTTCCTAAG+TGG 0.601311 2_1:-12802347 Msa0195850:CDS
ATGTTGTTACCACCGCGGAA+AGG 0.604039 2_1:+12802152 None:intergenic
TCCTTATTACTGCGCCGCCG+GGG 0.605888 2_1:-12801584 Msa0195850:CDS
TCATCTCATAACCAATGACT+AGG 0.607836 2_1:+12799834 None:intergenic
CAGAGAATTACTGAACAAGC+TGG 0.610576 2_1:-12800913 Msa0195850:CDS
TTCAAAGATCCTTTCCGCGG+TGG 0.612743 2_1:-12802161 Msa0195850:CDS
GGCTATTGTAATAACGATAG+GGG 0.614408 2_1:+12804346 None:intergenic
TTCCACTTAGGAAGCTCAGA+GGG 0.616333 2_1:+12802345 None:intergenic
GTAGGGATAGGCTCACCTTG+TGG 0.616926 2_1:+12802014 None:intergenic
CCACACGGATTGAGCATCCA+CGG 0.619918 2_1:+12800358 None:intergenic
AGATATTGTTTGGACAAATG+AGG 0.620103 2_1:-12799865 Msa0195850:three_prime_UTR
TCGTTGGCTGTGTTTGCATG+TGG 0.621670 2_1:-12799788 Msa0195850:three_prime_UTR
CCTAGTGTAGGTATTGAAGC+TGG 0.623241 2_1:-12801172 Msa0195850:intron
GATGAGATCGGAGTTGCAAG+GGG 0.624226 2_1:+12803050 None:intergenic
GACACCGAGAAGAATGGCAA+AGG 0.626801 2_1:-12800330 Msa0195850:intron
CTATATGGTTCAGTGACACA+AGG 0.630105 2_1:-12804292 Msa0195850:five_prime_UTR
CGATAGGGGTGTGCTATGAG+TGG 0.630490 2_1:+12804360 None:intergenic
CACTTCACTATCTTCACCAG+GGG 0.632006 2_1:+12802296 None:intergenic
CGTGGATGCTCAATCCGTGT+GGG 0.632481 2_1:-12800357 Msa0195850:CDS
CCGTGGATGCTCAATCCGTG+TGG 0.633763 2_1:-12800358 Msa0195850:CDS
TGAAATCTTCAGTAACCCAA+AGG 0.645974 2_1:-12801970 Msa0195850:CDS
GGCTTCAAGGTACATCCTTG+AGG 0.647096 2_1:-12801137 Msa0195850:intron
AAGAGCATGAGGGAAGATGG+AGG 0.649362 2_1:-12800634 Msa0195850:CDS
AGAGCATGAGGGAAGATGGA+GGG 0.649616 2_1:-12800633 Msa0195850:CDS
TATGCTGGAATTAACATCAG+TGG 0.654120 2_1:-12801508 Msa0195850:intron
CAACTCTGGCACCATCAACA+GGG 0.659254 2_1:-12802952 Msa0195850:CDS
TGCGATGCTTATACACCACA+AGG 0.660080 2_1:-12802029 Msa0195850:CDS
ATTGTGGGAACCAACTCTAG+AGG 0.660710 2_1:-12800017 Msa0195850:CDS
TTTCAGTACAAAGAGCATGA+GGG 0.669238 2_1:-12800644 Msa0195850:intron
ATGCAGGGAGTGGCTAACCG+TGG 0.669725 2_1:-12800375 Msa0195850:intron
TCACTTCACTATCTTCACCA+GGG 0.684268 2_1:+12802295 None:intergenic
AGGTTGAGGCTGAAATTCCG+TGG 0.684939 2_1:-12801950 Msa0195850:intron
AAATGACTTATCTGCCCCGG+CGG 0.706244 2_1:+12801570 None:intergenic
GAGTTGTGTAAAATAAAGGT+TGG 0.708005 2_1:+12804322 None:intergenic
CCAAAATGTTGTTACCACCG+CGG 0.710389 2_1:+12802147 None:intergenic
GTTCCACTTAGGAAGCTCAG+AGG 0.715738 2_1:+12802344 None:intergenic
ATGCTTCAATGTGAACCTTG+TGG 0.722374 2_1:+12800569 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTATTTATAATTTGATT+AGG + chr2_1:12801241-12801260 None:intergenic 10.0%
!!! ATTAATTTTACTAATTGTTT+TGG - chr2_1:12803248-12803267 Msa0195850:intron 10.0%
!! ATTTATAATATTTATCAACT+TGG + chr2_1:12803393-12803412 None:intergenic 10.0%
!! CATAATATAATAAATCTAAA+TGG + chr2_1:12804175-12804194 None:intergenic 10.0%
!!! GACTTATAATATTTTAGATA+AGG + chr2_1:12799636-12799655 None:intergenic 15.0%
!!! AAATCTCAACATTTAATTTT+TGG - chr2_1:12799996-12800015 Msa0195850:CDS 15.0%
!!! TAACAAAGAATATTTCTTTT+TGG + chr2_1:12800301-12800320 None:intergenic 15.0%
!!! AAAATGCTTTTATTTATGTT+AGG - chr2_1:12800788-12800807 Msa0195850:intron 15.0%
!! AGAATAAAATACATTCATAT+AGG + chr2_1:12801669-12801688 None:intergenic 15.0%
!! ATTTCATAATATTTGCATTT+CGG + chr2_1:12801980-12801999 None:intergenic 15.0%
!!! TGTTTTATTTCAAATTTCAT+AGG - chr2_1:12802396-12802415 Msa0195850:intron 15.0%
!! TAGTAAAATTAATTAGCATA+AGG + chr2_1:12803241-12803260 None:intergenic 15.0%
!!! TGTAAAGTATTCTTATAAAA+TGG - chr2_1:12803660-12803679 Msa0195850:intron 15.0%
!! TATATTATGAAGATATTGTT+TGG - chr2_1:12804186-12804205 Msa0195850:intron 15.0%
!!! TTTAAGTTAAAAATAAAGGG+TGG - chr2_1:12800044-12800063 Msa0195850:CDS 20.0%
!! TTTAGTAGAAATGAAAAACT+TGG - chr2_1:12800209-12800228 Msa0195850:intron 20.0%
!! TTAGTAGAAATGAAAAACTT+GGG - chr2_1:12800210-12800229 Msa0195850:intron 20.0%
!!! TTGAGTGATGATTTATTTTT+TGG - chr2_1:12800367-12800386 Msa0195850:CDS 20.0%
!!! AGATATCATCATTTAAGATA+AGG + chr2_1:12800691-12800710 None:intergenic 20.0%
!! AAATAGATCAAACAATAACA+TGG + chr2_1:12801625-12801644 None:intergenic 20.0%
!! TTGGTAAAATTAAAAAGGTA+AGG + chr2_1:12802150-12802169 None:intergenic 20.0%
!!! AGTAGTTGGTAAAATTAAAA+AGG + chr2_1:12802155-12802174 None:intergenic 20.0%
!!! ATAGAAGATAACTTAACTTT+TGG - chr2_1:12802212-12802231 Msa0195850:intron 20.0%
!! TTGAAATAAAACACAAGAAA+TGG + chr2_1:12802389-12802408 None:intergenic 20.0%
!! AATTAGTGAATTTCAAAATG+TGG - chr2_1:12802419-12802438 Msa0195850:intron 20.0%
!! ATATTCCTTCATATTATATC+AGG - chr2_1:12802453-12802472 Msa0195850:intron 20.0%
!! TATTCCTTCATATTATATCA+GGG - chr2_1:12802454-12802473 Msa0195850:intron 20.0%
!!! AATTTCATTTAACCTACTTT+TGG - chr2_1:12802948-12802967 Msa0195850:CDS 20.0%
!!! AATTGTAGACTTTTAATCAA+GGG + chr2_1:12803902-12803921 None:intergenic 20.0%
!!! TAATTGTAGACTTTTAATCA+AGG + chr2_1:12803903-12803922 None:intergenic 20.0%
!!! AGTCTAAATCTATTGATTAA+TGG - chr2_1:12804101-12804120 Msa0195850:intron 20.0%
!! GAATACCATTTTCATTCTTA+TGG - chr2_1:12799881-12799900 Msa0195850:three_prime_UTR 25.0%
! CTTTACCATAAGAATGAAAA+TGG + chr2_1:12799889-12799908 None:intergenic 25.0%
!! TTTCATCATTTAAGTTCTTG+TGG - chr2_1:12800146-12800165 Msa0195850:intron 25.0%
! TTTATTCACTAATCACTATC+AGG + chr2_1:12800560-12800579 None:intergenic 25.0%
! AGTGAATAAAATGTCTTGTA+AGG - chr2_1:12800570-12800589 Msa0195850:CDS 25.0%
! CATTAACATAAGAATGGAAA+TGG + chr2_1:12801267-12801286 None:intergenic 25.0%
! GTAGTACATTAACATAAGAA+TGG + chr2_1:12801273-12801292 None:intergenic 25.0%
! CTTATGTTAATGTACTACAT+AGG - chr2_1:12801275-12801294 Msa0195850:intron 25.0%
!!! TGATACTTTTTTTCTGAAAC+AGG - chr2_1:12801513-12801532 Msa0195850:CDS 25.0%
!! AGTAACATGAATAGAAGTAT+CGG + chr2_1:12801814-12801833 None:intergenic 25.0%
!! CTTTATGTCTCTTATTTGTA+GGG + chr2_1:12802067-12802086 None:intergenic 25.0%
! ATATGTGAAAAACCAAAAGT+AGG + chr2_1:12802963-12802982 None:intergenic 25.0%
! TTCAACTATTTAATACAGAG+AGG - chr2_1:12802989-12803008 Msa0195850:CDS 25.0%
! ACATTATCTTAATTCTGTGT+AGG - chr2_1:12803048-12803067 Msa0195850:CDS 25.0%
!!! CAATAATGGTGTCTTTTTTA+AGG - chr2_1:12803080-12803099 Msa0195850:CDS 25.0%
! TATGTCAAAAAACCTGTAAT+TGG + chr2_1:12803317-12803336 None:intergenic 25.0%
! ACAGATATGATTCATAACAA+AGG + chr2_1:12803340-12803359 None:intergenic 25.0%
! TCTTATAAAATGGAATATGC+AGG - chr2_1:12803670-12803689 Msa0195850:intron 25.0%
! CTTATAAAATGGAATATGCA+GGG - chr2_1:12803671-12803690 Msa0195850:intron 25.0%
!! AGACTTTTGCATATAGAAAA+AGG + chr2_1:12803839-12803858 None:intergenic 25.0%
! TTGTATATCAGATATTTCGT+TGG - chr2_1:12804257-12804276 Msa0195850:five_prime_UTR 25.0%
! TATTCCATTATAAATGTCCT+CGG + chr2_1:12804421-12804440 None:intergenic 25.0%
TGGCTATTGTAATAACGATA+GGG + chr2_1:12799719-12799738 None:intergenic 30.0%
TTGTGTAAAATAAAGGTTGG+TGG + chr2_1:12799739-12799758 None:intergenic 30.0%
GAGTTGTGTAAAATAAAGGT+TGG + chr2_1:12799742-12799761 None:intergenic 30.0%
GTGAGAGTTGTGTAAAATAA+AGG + chr2_1:12799746-12799765 None:intergenic 30.0%
ACCAATACAGAGTTGAAAAA+TGG + chr2_1:12799842-12799861 None:intergenic 30.0%
AAGTTAAAAATAAAGGGTGG+TGG - chr2_1:12800047-12800066 Msa0195850:CDS 30.0%
!! TGAAAAAGTTAGTTCTGCTT+TGG + chr2_1:12800131-12800150 None:intergenic 30.0%
AAAAACTTGGGTCATTGTAA+TGG - chr2_1:12800222-12800241 Msa0195850:intron 30.0%
!! AATCATTCTTGTATTGACTG+AGG - chr2_1:12800461-12800480 Msa0195850:intron 30.0%
GCAAAAATTGTCAAAAACTG+AGG + chr2_1:12800729-12800748 None:intergenic 30.0%
TCATCAGTCAAATTTGAGAA+TGG - chr2_1:12800813-12800832 Msa0195850:intron 30.0%
! ACTTTTTGTTAAGCAGAACA+TGG - chr2_1:12800935-12800954 Msa0195850:intron 30.0%
TTCTGCTAAATTCAGAGTAA+TGG - chr2_1:12801082-12801101 Msa0195850:intron 30.0%
GGTTGAGGATTTACTTAATT+TGG - chr2_1:12801130-12801149 Msa0195850:intron 30.0%
!!! CTTTTTTTCTGAAACAGGAT+TGG - chr2_1:12801518-12801537 Msa0195850:CDS 30.0%
GGTACACAAATTCTTACTAT+AGG + chr2_1:12801793-12801812 None:intergenic 30.0%
GATCAAAGTTAAATCTGCAA+TGG + chr2_1:12801851-12801870 None:intergenic 30.0%
!! CGAATTATTTTGTTTCACGA+AGG - chr2_1:12802004-12802023 Msa0195850:CDS 30.0%
! GCTTTATGTCTCTTATTTGT+AGG + chr2_1:12802068-12802087 None:intergenic 30.0%
! GTTGTATGTTGATTGTTCAA+AGG - chr2_1:12802270-12802289 Msa0195850:intron 30.0%
! ATGTTGATTGTTCAAAGGTA+TGG - chr2_1:12802275-12802294 Msa0195850:intron 30.0%
! TTTCACATCTGTTTGAAGTA+AGG + chr2_1:12802318-12802337 None:intergenic 30.0%
TACTTCAAACAGATGTGAAA+TGG - chr2_1:12802318-12802337 Msa0195850:CDS 30.0%
TATATCTGATGCTCATTACA+AGG - chr2_1:12802522-12802541 Msa0195850:CDS 30.0%
ATCATAACACGTGAAACAAA+AGG + chr2_1:12802624-12802643 None:intergenic 30.0%
! TTCTTTTATGAATCTTGCAG+TGG - chr2_1:12802851-12802870 Msa0195850:intron 30.0%
! TCTTTTATGAATCTTGCAGT+GGG - chr2_1:12802852-12802871 Msa0195850:intron 30.0%
GGTTAAATGAAATTACCTCA+AGG + chr2_1:12802942-12802961 None:intergenic 30.0%
!! TATAGTACCTCAATTGGTTT+TGG + chr2_1:12803193-12803212 None:intergenic 30.0%
AAGCATTATAGTACCTCAAT+TGG + chr2_1:12803199-12803218 None:intergenic 30.0%
!!! TTTTGGTTTTAACCTTGACA+GGG - chr2_1:12803265-12803284 Msa0195850:intron 30.0%
TTACTGTGTTTAACAAGAGT+AGG + chr2_1:12803609-12803628 None:intergenic 30.0%
ATACCAGAAAACTAATTCCA+AGG - chr2_1:12803773-12803792 Msa0195850:intron 30.0%
TATATGCAAAAGTCTACAAG+TGG - chr2_1:12803844-12803863 Msa0195850:intron 30.0%
AGATATTGTTTGGACAAATG+AGG - chr2_1:12804196-12804215 Msa0195850:intron 30.0%
TTATAAGTCCAAGCTTCTCT+TGG - chr2_1:12799647-12799666 Msa0195850:three_prime_UTR 35.0%
!! GAGTGGATGAAGTTTGTTTT+TGG + chr2_1:12799687-12799706 None:intergenic 35.0%
GGCTATTGTAATAACGATAG+GGG + chr2_1:12799718-12799737 None:intergenic 35.0%
GTGGCTATTGTAATAACGAT+AGG + chr2_1:12799720-12799739 None:intergenic 35.0%
! AAGCTGCAAACTTTGGAAAT+GGG + chr2_1:12799815-12799834 None:intergenic 35.0%
! AAAGCTGCAAACTTTGGAAA+TGG + chr2_1:12799816-12799835 None:intergenic 35.0%
!!! GCCATTTTTCAACTCTGTAT+TGG - chr2_1:12799838-12799857 Msa0195850:three_prime_UTR 35.0%
!! TAAAGGGTGGTGGTTATTTT+TGG - chr2_1:12800057-12800076 Msa0195850:CDS 35.0%
ATCACTCAAGAAAATGTGCA+AGG + chr2_1:12800356-12800375 None:intergenic 35.0%
AATGTGCATCTTATTGAGTG+TGG - chr2_1:12800430-12800449 Msa0195850:intron 35.0%
TCAAATTTGAGAATGGTTGC+TGG - chr2_1:12800820-12800839 Msa0195850:intron 35.0%
ATCAAAGATGTGGAGTTCTT+TGG - chr2_1:12801031-12801050 Msa0195850:intron 35.0%
!! ACACCTTCAAGTTGAATTGT+CGG + chr2_1:12801302-12801321 None:intergenic 35.0%
ACTAGCACATACACAAATAC+TGG + chr2_1:12801451-12801470 None:intergenic 35.0%
!!! TTTTTCTGAAACAGGATTGG+TGG - chr2_1:12801521-12801540 Msa0195850:CDS 35.0%
! GGATCTTTGAAAATTGCTTG+AGG + chr2_1:12801891-12801910 None:intergenic 35.0%
! ATTTTCAAAGATCCTTTCCG+CGG - chr2_1:12801897-12801916 Msa0195850:intron 35.0%
!! GGTAACAACATTTTGGTAAG+TGG - chr2_1:12801921-12801940 Msa0195850:intron 35.0%
! TGTCTCTTATTTGTAGGGAT+AGG + chr2_1:12802062-12802081 None:intergenic 35.0%
TGAAATCTTCAGTAACCCAA+AGG - chr2_1:12802091-12802110 Msa0195850:intron 35.0%
! AAGGAGTACAATACATACCA+CGG + chr2_1:12802131-12802150 None:intergenic 35.0%
CGAAGCTAGAAAATGAAACT+AGG - chr2_1:12802181-12802200 Msa0195850:intron 35.0%
ACAAGAAATGGTATTACCTG+AGG + chr2_1:12802377-12802396 None:intergenic 35.0%
AGGACCCTGATATAATATGA+AGG + chr2_1:12802461-12802480 None:intergenic 35.0%
TATGCTGGAATTAACATCAG+TGG - chr2_1:12802553-12802572 Msa0195850:intron 35.0%
ATTAACATCAGTGGTACCAA+TGG - chr2_1:12802562-12802581 Msa0195850:intron 35.0%
GGTACAACAAGAAATTTACC+TGG + chr2_1:12802603-12802622 None:intergenic 35.0%
! CTTAATTCTGTGTAGGCTTT+TGG - chr2_1:12803055-12803074 Msa0195850:CDS 35.0%
!!! GTAGGCTTTTGGTTCAATAA+TGG - chr2_1:12803066-12803085 Msa0195850:CDS 35.0%
TTGTTCAGTAATTCTCTGTC+AGG + chr2_1:12803146-12803165 None:intergenic 35.0%
!!! CTCAATTGGTTTTGGATCAA+GGG + chr2_1:12803185-12803204 None:intergenic 35.0%
!!! GTTTTGGTTTTAACCTTGAC+AGG - chr2_1:12803264-12803283 Msa0195850:intron 35.0%
!! TTTTCAGTACAAAGAGCATG+AGG - chr2_1:12803416-12803435 Msa0195850:intron 35.0%
! TTTCAGTACAAAGAGCATGA+GGG - chr2_1:12803417-12803436 Msa0195850:intron 35.0%
! AGGGTTTGAGGTAATAAAGA+AGG - chr2_1:12803447-12803466 Msa0195850:intron 35.0%
AAGGTTCACATTGAAGCATA+TGG - chr2_1:12803496-12803515 Msa0195850:intron 35.0%
! CAGCATCAACACATTTTCTT+GGG - chr2_1:12803561-12803580 Msa0195850:intron 35.0%
AAGAGTAGGTGTTCAAAGTT+TGG + chr2_1:12803595-12803614 None:intergenic 35.0%
GAAAATTTGAGCGCTAAAAG+CGG + chr2_1:12803799-12803818 None:intergenic 35.0%
TGCAATCAAGACATTAGGAA+AGG + chr2_1:12803947-12803966 None:intergenic 35.0%
TTTCCTAATGTCTTGATTGC+AGG - chr2_1:12803946-12803965 Msa0195850:intron 35.0%
TAACCTGCAATCAAGACATT+AGG + chr2_1:12803952-12803971 None:intergenic 35.0%
TTCAAACATGGATCCATATG+TGG - chr2_1:12803993-12804012 Msa0195850:intron 35.0%
TAATGTACTCTCTGCCAATA+AGG + chr2_1:12804025-12804044 None:intergenic 35.0%
TCATCTCATAACCAATGACT+AGG + chr2_1:12804230-12804249 None:intergenic 35.0%
TTGAATAGCTTCTCTTTCTG+AGG + chr2_1:12804391-12804410 None:intergenic 35.0%
! AGCTATTCAAATTTTCACCG+AGG - chr2_1:12804401-12804420 Msa0195850:five_prime_UTR 35.0%
TTCACCGAGGACATTTATAA+TGG - chr2_1:12804414-12804433 Msa0195850:five_prime_UTR 35.0%
!! CTTCTCTTGGTGCTCTTTAA+GGG - chr2_1:12799660-12799679 Msa0195850:three_prime_UTR 40.0%
CACAACTCTCACACTCTATA+TGG - chr2_1:12799754-12799773 Msa0195850:three_prime_UTR 40.0%
CTATATGGTTCAGTGACACA+AGG - chr2_1:12799769-12799788 Msa0195850:three_prime_UTR 40.0%
TGGCAAAAAGCTGCAAACTT+TGG + chr2_1:12799822-12799841 None:intergenic 40.0%
CACTAATCACTATCAGGAGT+TGG + chr2_1:12800554-12800573 None:intergenic 40.0%
CTTGTCTGACATTGTGTAGA+AGG + chr2_1:12800975-12800994 None:intergenic 40.0%
CTCCACATCTTTGATGAGAT+CGG + chr2_1:12801026-12801045 None:intergenic 40.0%
AGAGTAATGGCAATCAACTC+TGG - chr2_1:12801095-12801114 Msa0195850:intron 40.0%
TAAATCCTCAACCCTGTTGA+TGG + chr2_1:12801123-12801142 None:intergenic 40.0%
GCAATTATGCTGTCAGTGAA+TGG + chr2_1:12801164-12801183 None:intergenic 40.0%
GCATAATTGCTGAGTACATC+TGG - chr2_1:12801174-12801193 Msa0195850:intron 40.0%
! ATGCTCAACAGGCTTTGATA+TGG + chr2_1:12801696-12801715 None:intergenic 40.0%
CTTCCTAAGTGGAACTATGA+TGG - chr2_1:12801725-12801744 Msa0195850:CDS 40.0%
GATCCATCATAGTTCCACTT+AGG + chr2_1:12801731-12801750 None:intergenic 40.0%
!! AACTATGATGGATCTAGCAC+TGG - chr2_1:12801737-12801756 Msa0195850:CDS 40.0%
TCACTTCACTATCTTCACCA+GGG + chr2_1:12801769-12801788 None:intergenic 40.0%
ATCACTTCACTATCTTCACC+AGG + chr2_1:12801770-12801789 None:intergenic 40.0%
TGAAAATTGCTTGAGGACTG+TGG + chr2_1:12801884-12801903 None:intergenic 40.0%
GAATTTCAGCCTCAACCTTT+GGG + chr2_1:12802109-12802128 None:intergenic 40.0%
TAGCTTCGAACAACAGTAGT+TGG + chr2_1:12802169-12802188 None:intergenic 40.0%
ACAGATGTGAAATGGCCATT+AGG - chr2_1:12802326-12802345 Msa0195850:CDS 40.0%
ATGTGAAATGGCCATTAGGT+TGG - chr2_1:12802330-12802349 Msa0195850:CDS 40.0%
! TACAAGGCTTGCTTATATGC+TGG - chr2_1:12802538-12802557 Msa0195850:intron 40.0%
AACAAGAAATTTACCTGGCC+AGG + chr2_1:12802598-12802617 None:intergenic 40.0%
CATGACATAAGCACAAGTGT+CGG - chr2_1:12802711-12802730 Msa0195850:intron 40.0%
!! TGAAGACTTCGGTGCTATAT+AGG - chr2_1:12802797-12802816 Msa0195850:intron 40.0%
!! TATCAAGTTGGTCCTAGTGT+AGG - chr2_1:12802877-12802896 Msa0195850:intron 40.0%
TTGAAGCTGGTGATCATATC+TGG - chr2_1:12802902-12802921 Msa0195850:CDS 40.0%
TGAAGCTGGTGATCATATCT+GGG - chr2_1:12802903-12802922 Msa0195850:CDS 40.0%
CAGAGAATTACTGAACAAGC+TGG - chr2_1:12803148-12803167 Msa0195850:intron 40.0%
!!! CCTCAATTGGTTTTGGATCA+AGG + chr2_1:12803186-12803205 None:intergenic 40.0%
CCTTGATCCAAAACCAATTG+AGG - chr2_1:12803183-12803202 Msa0195850:intron 40.0%
ATGCTTCAATGTGAACCTTG+TGG + chr2_1:12803495-12803514 None:intergenic 40.0%
CACATTGAAGCATATGGAGA+AGG - chr2_1:12803502-12803521 Msa0195850:intron 40.0%
ATGGAGAAGGAAATGAGAGA+AGG - chr2_1:12803515-12803534 Msa0195850:intron 40.0%
! CCAAGAAAATGTGTTGATGC+TGG + chr2_1:12803563-12803582 None:intergenic 40.0%
! CCAGCATCAACACATTTTCT+TGG - chr2_1:12803560-12803579 Msa0195850:intron 40.0%
AAAATGGAATATGCAGGGAG+TGG - chr2_1:12803676-12803695 Msa0195850:intron 40.0%
AGGGTTCAAAATTCGAACTC+TGG + chr2_1:12803883-12803902 None:intergenic 40.0%
TGTCTTGATTGCAGGTTACT+TGG - chr2_1:12803954-12803973 Msa0195850:intron 40.0%
! TATGGATCCATGTTTGAAGC+CGG + chr2_1:12803991-12804010 None:intergenic 40.0%
AATAAGGCTGTCACCACATA+TGG + chr2_1:12804009-12804028 None:intergenic 40.0%
! ATATGTGGTGACAGCCTTAT+TGG - chr2_1:12804008-12804027 Msa0195850:intron 40.0%
! TGGCAGAGAGTACATTATTG+TGG - chr2_1:12804028-12804047 Msa0195850:intron 40.0%
! GGCAGAGAGTACATTATTGT+GGG - chr2_1:12804029-12804048 Msa0195850:intron 40.0%
TCATAACCAATGACTAGGCA+TGG + chr2_1:12804225-12804244 None:intergenic 40.0%
!! AAAGAGCACCAAGAGAAGCT+TGG + chr2_1:12799658-12799677 None:intergenic 45.0%
!! GCTTCTCTTGGTGCTCTTTA+AGG - chr2_1:12799659-12799678 Msa0195850:three_prime_UTR 45.0%
! GCAGAACATGGCACAGATTT+TGG - chr2_1:12800947-12800966 Msa0195850:intron 45.0%
TGATGAGATCGGAGTTGCAA+GGG + chr2_1:12801015-12801034 None:intergenic 45.0%
TTGATGAGATCGGAGTTGCA+AGG + chr2_1:12801016-12801035 None:intergenic 45.0%
CTCCGATCTCATCAAAGATG+TGG - chr2_1:12801021-12801040 Msa0195850:intron 45.0%
GGACCGACAATTCAACTTGA+AGG - chr2_1:12801296-12801315 Msa0195850:intron 45.0%
! TGAAACAGGATTGGTGGAAC+AGG - chr2_1:12801527-12801546 Msa0195850:CDS 45.0%
TTCCACTTAGGAAGCTCAGA+GGG + chr2_1:12801719-12801738 None:intergenic 45.0%
CACTTCACTATCTTCACCAG+GGG + chr2_1:12801768-12801787 None:intergenic 45.0%
AAATTGCTTGAGGACTGTGG+AGG + chr2_1:12801881-12801900 None:intergenic 45.0%
CCAAAATGTTGTTACCACCG+CGG + chr2_1:12801917-12801936 None:intergenic 45.0%
TGCGATGCTTATACACCACA+AGG - chr2_1:12802032-12802051 Msa0195850:CDS 45.0%
CTTCAGTAACCCAAAGGTTG+AGG - chr2_1:12802097-12802116 Msa0195850:intron 45.0%
GGAATTTCAGCCTCAACCTT+TGG + chr2_1:12802110-12802129 None:intergenic 45.0%
AATGGTATTACCTGAGGACC+AGG + chr2_1:12802371-12802390 None:intergenic 45.0%
ACCAAATGACTTATCTGCCC+CGG + chr2_1:12802497-12802516 None:intergenic 45.0%
GTAGATGCAGACATCAGACA+CGG - chr2_1:12802659-12802678 Msa0195850:intron 45.0%
ACATGTGTCAATGCCCAACA+CGG + chr2_1:12802745-12802764 None:intergenic 45.0%
!! TGTTGGGCATTGACACATGT+TGG - chr2_1:12802745-12802764 Msa0195850:intron 45.0%
!! TTCACAATGAAGGCGTCTCT+CGG + chr2_1:12802781-12802800 None:intergenic 45.0%
CGCCTTCATTGTGAAGACTT+CGG - chr2_1:12802786-12802805 Msa0195850:intron 45.0%
CACCGAAGTCTTCACAATGA+AGG + chr2_1:12802791-12802810 None:intergenic 45.0%
!! TTGCAGTGGGAGTATCAAGT+TGG - chr2_1:12802865-12802884 Msa0195850:intron 45.0%
CCAGCTTCAATACCTACACT+AGG + chr2_1:12802892-12802911 None:intergenic 45.0%
!! CCTAGTGTAGGTATTGAAGC+TGG - chr2_1:12802889-12802908 Msa0195850:CDS 45.0%
GTGATCATATCTGGGCTTCA+AGG - chr2_1:12802911-12802930 Msa0195850:CDS 45.0%
TTTAACCTTGACAGGGCGAT+TGG - chr2_1:12803272-12803291 Msa0195850:intron 45.0%
CAGGATGTCACACCAATTAC+AGG - chr2_1:12803302-12803321 Msa0195850:intron 45.0%
! ACAAAGAGCATGAGGGAAGA+TGG - chr2_1:12803424-12803443 Msa0195850:intron 45.0%
AATGTGAACCTTGTGGCGAA+GGG + chr2_1:12803488-12803507 None:intergenic 45.0%
GGAAATGAGAGAAGGTTGAC+AGG - chr2_1:12803523-12803542 Msa0195850:intron 45.0%
CTCACCTTTGCCATTCTTCT+CGG + chr2_1:12803738-12803757 None:intergenic 45.0%
!!! CGGCCTTGGAATTAGTTTTC+TGG + chr2_1:12803779-12803798 None:intergenic 45.0%
TTGCAGGTTACTTGGAAGAC+AGG - chr2_1:12803962-12803981 Msa0195850:intron 45.0%
ATTGTGGGAACCAACTCTAG+AGG - chr2_1:12804044-12804063 Msa0195850:intron 45.0%
!!! TTTTTTTAAGTTAAAAATAA+AGG - chr2_1:12800040-12800059 Msa0195850:CDS 5.0%
!!! TTTTTTAAGTTAAAAATAAA+GGG - chr2_1:12800041-12800060 Msa0195850:CDS 5.0%
GATGAGATCGGAGTTGCAAG+GGG + chr2_1:12801014-12801033 None:intergenic 50.0%
TCAACTCTGGCACCATCAAC+AGG - chr2_1:12801108-12801127 Msa0195850:intron 50.0%
CAACTCTGGCACCATCAACA+GGG - chr2_1:12801109-12801128 Msa0195850:intron 50.0%
ATCCCTCTGAGCTTCCTAAG+TGG - chr2_1:12801714-12801733 Msa0195850:CDS 50.0%
GTTCCACTTAGGAAGCTCAG+AGG + chr2_1:12801720-12801739 None:intergenic 50.0%
TTCAAAGATCCTTTCCGCGG+TGG - chr2_1:12801900-12801919 Msa0195850:intron 50.0%
ATGTTGTTACCACCGCGGAA+AGG + chr2_1:12801912-12801931 None:intergenic 50.0%
! CCGCGGTGGTAACAACATTT+TGG - chr2_1:12801914-12801933 Msa0195850:intron 50.0%
AGGTTGAGGCTGAAATTCCG+TGG - chr2_1:12802111-12802130 Msa0195850:intron 50.0%
AAATGACTTATCTGCCCCGG+CGG + chr2_1:12802494-12802513 None:intergenic 50.0%
CATCAGTGGTACCAATGGAG+AGG - chr2_1:12802567-12802586 Msa0195850:intron 50.0%
ACCAATGGAGAGGTTATGCC+TGG - chr2_1:12802577-12802596 Msa0195850:intron 50.0%
GGCTTCAAGGTACATCCTTG+AGG - chr2_1:12802924-12802943 Msa0195850:CDS 50.0%
! AAGAGCATGAGGGAAGATGG+AGG - chr2_1:12803427-12803446 Msa0195850:intron 50.0%
AGAGCATGAGGGAAGATGGA+GGG - chr2_1:12803428-12803447 Msa0195850:intron 50.0%
CAATGTGAACCTTGTGGCGA+AGG + chr2_1:12803489-12803508 None:intergenic 50.0%
GGAAGAGACACCGAGAAGAA+TGG - chr2_1:12803725-12803744 Msa0195850:intron 50.0%
GACACCGAGAAGAATGGCAA+AGG - chr2_1:12803731-12803750 Msa0195850:intron 50.0%
TTACTTGGAAGACAGGCGTC+CGG - chr2_1:12803969-12803988 Msa0195850:intron 50.0%
!! AGAGCTTCAGCCTCTAGAGT+TGG + chr2_1:12804057-12804076 None:intergenic 50.0%
! TCGTTGGCTGTGTTTGCATG+TGG - chr2_1:12804273-12804292 Msa0195850:five_prime_UTR 50.0%
GGCTGTGTTTGCATGTGGTA+TGG - chr2_1:12804278-12804297 Msa0195850:five_prime_UTR 50.0%
! CGATAGGGGTGTGCTATGAG+TGG + chr2_1:12799704-12799723 None:intergenic 55.0%
TGGCACCATCAACAGGGTTG+AGG - chr2_1:12801115-12801134 Msa0195850:intron 55.0%
AGCTCAGAGGGATGCTCAAC+AGG + chr2_1:12801707-12801726 None:intergenic 55.0%
GTAGGGATAGGCTCACCTTG+TGG + chr2_1:12802050-12802069 None:intergenic 55.0%
!! TGGCCATTAGGTTGGCCTGT+TGG - chr2_1:12802338-12802357 Msa0195850:CDS 55.0%
CCACCAACAGGCCAACCTAA+TGG + chr2_1:12802344-12802363 None:intergenic 55.0%
!! CCATTAGGTTGGCCTGTTGG+TGG - chr2_1:12802341-12802360 Msa0195850:CDS 55.0%
GCCGGGGCAGATAAGTCATT+TGG - chr2_1:12802493-12802512 Msa0195850:intron 55.0%
GCCAGGCATAACCTCTCCAT+TGG + chr2_1:12802581-12802600 None:intergenic 55.0%
!! TGTCGGTTTCGTGTCCGTGT+TGG - chr2_1:12802728-12802747 Msa0195850:intron 55.0%
! GTCGGTTTCGTGTCCGTGTT+GGG - chr2_1:12802729-12802748 Msa0195850:intron 55.0%
CCATTCCAATCGCCCTGTCA+AGG + chr2_1:12803280-12803299 None:intergenic 55.0%
CCTTGACAGGGCGATTGGAA+TGG - chr2_1:12803277-12803296 Msa0195850:intron 55.0%
GAGGGAAGATGGAGGGTTTG+AGG - chr2_1:12803435-12803454 Msa0195850:intron 55.0%
GAACCTTTCCCTTCGCCACA+AGG - chr2_1:12803477-12803496 Msa0195850:intron 55.0%
GAACCTTGTGGCGAAGGGAA+AGG + chr2_1:12803483-12803502 None:intergenic 55.0%
! CCACACGGATTGAGCATCCA+CGG + chr2_1:12803706-12803725 None:intergenic 55.0%
CGTGGATGCTCAATCCGTGT+GGG - chr2_1:12803704-12803723 Msa0195850:intron 55.0%
!! TCTCGGTGTCTCTTCCCACA+CGG + chr2_1:12803721-12803740 None:intergenic 55.0%
TTGAGCGCTAAAAGCGGCCT+TGG + chr2_1:12803793-12803812 None:intergenic 55.0%
CAGCACTGCTGCAGTTTGTG+AGG - chr2_1:12804127-12804146 Msa0195850:intron 55.0%
TGCTGCAGTTTGTGAGGTGC+TGG - chr2_1:12804133-12804152 Msa0195850:intron 55.0%
! GCTGCAGTTTGTGAGGTGCT+GGG - chr2_1:12804134-12804153 Msa0195850:intron 55.0%
AGGCTGCCATGCCTAGTCAT+TGG - chr2_1:12804216-12804235 Msa0195850:intron 55.0%
! TCTAGCACTGGACAAGCCCC+TGG - chr2_1:12801749-12801768 Msa0195850:CDS 60.0%
!! TGGCCTGTTGGTGGCTATCC+TGG - chr2_1:12802350-12802369 Msa0195850:CDS 60.0%
GGACCAGGATAGCCACCAAC+AGG + chr2_1:12802356-12802375 None:intergenic 60.0%
TGGTGGCTATCCTGGTCCTC+AGG - chr2_1:12802358-12802377 Msa0195850:CDS 60.0%
GGTCCTTATTACTGCGCCGC+CGG - chr2_1:12802475-12802494 Msa0195850:intron 60.0%
GTCCTTATTACTGCGCCGCC+GGG - chr2_1:12802476-12802495 Msa0195850:intron 60.0%
TCCTTATTACTGCGCCGCCG+GGG - chr2_1:12802477-12802496 Msa0195850:intron 60.0%
TGGAGAGGTTATGCCTGGCC+AGG - chr2_1:12802582-12802601 Msa0195850:intron 60.0%
CAGGGCGATTGGAATGGTGC+AGG - chr2_1:12803283-12803302 Msa0195850:intron 60.0%
ATGCAGGGAGTGGCTAACCG+TGG - chr2_1:12803686-12803705 Msa0195850:intron 60.0%
CCGTGGATGCTCAATCCGTG+TGG - chr2_1:12803703-12803722 Msa0195850:intron 60.0%
CAGGCGTCCGGCTTCAAACA+TGG - chr2_1:12803981-12804000 Msa0195850:intron 60.0%
GCCCCGGCGGCGCAGTAATA+AGG + chr2_1:12802481-12802500 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 12799618 12804465 12799618 ID=Msa0195850;Name=Msa0195850
chr2_1 mRNA 12799618 12804465 12799618 ID=Msa0195850-mRNA-1;Parent=Msa0195850;Name=Msa0195850-mRNA-1;_AED=0.37;_eAED=0.37;_QI=245|0.92|0.85|1|0.92|0.85|14|358|409
chr2_1 exon 12799618 12800115 12799618 ID=Msa0195850-mRNA-1:exon:5625;Parent=Msa0195850-mRNA-1
chr2_1 exon 12800331 12800391 12800331 ID=Msa0195850-mRNA-1:exon:5624;Parent=Msa0195850-mRNA-1
chr2_1 exon 12800501 12800660 12800501 ID=Msa0195850-mRNA-1:exon:5623;Parent=Msa0195850-mRNA-1
chr2_1 exon 12800760 12800797 12800760 ID=Msa0195850-mRNA-1:exon:5622;Parent=Msa0195850-mRNA-1
chr2_1 exon 12800879 12800932 12800879 ID=Msa0195850-mRNA-1:exon:5621;Parent=Msa0195850-mRNA-1
chr2_1 exon 12801138 12801184 12801138 ID=Msa0195850-mRNA-1:exon:5620;Parent=Msa0195850-mRNA-1
chr2_1 exon 12801509 12801608 12801509 ID=Msa0195850-mRNA-1:exon:5619;Parent=Msa0195850-mRNA-1
chr2_1 exon 12801704 12801791 12801704 ID=Msa0195850-mRNA-1:exon:5618;Parent=Msa0195850-mRNA-1
chr2_1 exon 12801951 12802057 12801951 ID=Msa0195850-mRNA-1:exon:5617;Parent=Msa0195850-mRNA-1
chr2_1 exon 12802148 12802196 12802148 ID=Msa0195850-mRNA-1:exon:5616;Parent=Msa0195850-mRNA-1
chr2_1 exon 12802288 12802391 12802288 ID=Msa0195850-mRNA-1:exon:5615;Parent=Msa0195850-mRNA-1
chr2_1 exon 12802509 12802548 12802509 ID=Msa0195850-mRNA-1:exon:5614;Parent=Msa0195850-mRNA-1
chr2_1 exon 12802888 12803132 12802888 ID=Msa0195850-mRNA-1:exon:5613;Parent=Msa0195850-mRNA-1
chr2_1 exon 12804224 12804465 12804224 ID=Msa0195850-mRNA-1:exon:5612;Parent=Msa0195850-mRNA-1
chr2_1 five_prime_UTR 12804224 12804465 12804224 ID=Msa0195850-mRNA-1:five_prime_utr;Parent=Msa0195850-mRNA-1
chr2_1 five_prime_UTR 12803130 12803132 12803130 ID=Msa0195850-mRNA-1:five_prime_utr;Parent=Msa0195850-mRNA-1
chr2_1 CDS 12802888 12803129 12802888 ID=Msa0195850-mRNA-1:cds;Parent=Msa0195850-mRNA-1
chr2_1 CDS 12802509 12802548 12802509 ID=Msa0195850-mRNA-1:cds;Parent=Msa0195850-mRNA-1
chr2_1 CDS 12802288 12802391 12802288 ID=Msa0195850-mRNA-1:cds;Parent=Msa0195850-mRNA-1
chr2_1 CDS 12802148 12802196 12802148 ID=Msa0195850-mRNA-1:cds;Parent=Msa0195850-mRNA-1
chr2_1 CDS 12801951 12802057 12801951 ID=Msa0195850-mRNA-1:cds;Parent=Msa0195850-mRNA-1
chr2_1 CDS 12801704 12801791 12801704 ID=Msa0195850-mRNA-1:cds;Parent=Msa0195850-mRNA-1
chr2_1 CDS 12801509 12801608 12801509 ID=Msa0195850-mRNA-1:cds;Parent=Msa0195850-mRNA-1
chr2_1 CDS 12801138 12801184 12801138 ID=Msa0195850-mRNA-1:cds;Parent=Msa0195850-mRNA-1
chr2_1 CDS 12800879 12800932 12800879 ID=Msa0195850-mRNA-1:cds;Parent=Msa0195850-mRNA-1
chr2_1 CDS 12800760 12800797 12800760 ID=Msa0195850-mRNA-1:cds;Parent=Msa0195850-mRNA-1
chr2_1 CDS 12800501 12800660 12800501 ID=Msa0195850-mRNA-1:cds;Parent=Msa0195850-mRNA-1
chr2_1 CDS 12800331 12800391 12800331 ID=Msa0195850-mRNA-1:cds;Parent=Msa0195850-mRNA-1
chr2_1 CDS 12799976 12800115 12799976 ID=Msa0195850-mRNA-1:cds;Parent=Msa0195850-mRNA-1
chr2_1 three_prime_UTR 12799618 12799975 12799618 ID=Msa0195850-mRNA-1:three_prime_utr;Parent=Msa0195850-mRNA-1
Gene Sequence

>Msa0195850

ATGGCACAGATTTTGGCTCCTTCTACACAATGTCAGACAAGAATCACAAAAACATCTCCCCTTGCAACTCCGATCTCATCAAAGATGTGGAGTTCTTTGGTTATGAAACAAAACAAGAAAGTTGCACGTTCTGCTAAATTCAGAGTAATGGCAATCAACTCTGGCACCATCAACAGGGTTGAGGATTTACTTAATTTGGACATCACTCCATTCACTGACAGCATAATTGCTGAGTACATCTGGATTGGTGGAACAGGAATCGATGTGCGCAGTAAATCAAGAACCATATCAAAGCCTGTTGAGCATCCCTCTGAGCTTCCTAAGTGGAACTATGATGGATCTAGCACTGGACAAGCCCCTGGTGAAGATAGTGAAGTGATCCTATATCCTCAAGCAATTTTCAAAGATCCTTTCCGCGGTGGTAACAACATTTTGGTCATTTGCGATGCTTATACACCACAAGGTGAGCCTATCCCTACAAATAAGAGACATAAAGCTGCTGAAATCTTCAGTAACCCAAAGGTTGAGGCTGAAATTCCGTGGTATGGAATCGAACAAGAGTACACCTTACTTCAAACAGATGTGAAATGGCCATTAGGTTGGCCTGTTGGTGGCTATCCTGGTCCTCAGGGTCCTTATTACTGCGCCGCCGGGGCAGATAAGTCATTTGGTCGTGATATATCTGATGCTCATTACAAGGCTTGCTTATATGCTGGAATTAACATCAGTGGTATTGAAGCTGGTGATCATATCTGGGCTTCAAGGTACATCCTTGAGAGAATTACTGAACAAGCTGGTGTTGTGCTCACCCTTGATCCAAAACCAATTGAGGGCGATTGGAATGGTGCAGGATGTCACACCAATTACAGTACAAAGAGCATGAGGGAAGATGGAGGGTTTGAGGTAATAAAGAAGGCAATTTTGAACCTTTCCCTTCGCCACAAGGTTCACATTGAAGCATATGGAGAAGGAAATGAGAGAAGGTTGACAGGAAAGCATGAGACTGCCAGCATCAACACATTTTCTTGGGGAGTGGCTAACCGTGGATGCTCAATCCGTGTGGGAAGAGACACCGAGAAGAATGGCAAAGGTTACTTGGAAGACAGGCGTCCGGCTTCAAACATGGATCCATATGTGGTGACAGCCTTATTGGCAGAGAGTACATTATTGTGGGAACCAACTCTAGAGGCTGAAGCTCTTGCAGCTCAGAAGATTGCATTGAAAGTCTAA

Protein sequence

>Msa0195850

MAQILAPSTQCQTRITKTSPLATPISSKMWSSLVMKQNKKVARSAKFRVMAINSGTINRVEDLLNLDITPFTDSIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPQGEPIPTNKRHKAAEIFSNPKVEAEIPWYGIEQEYTLLQTDVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKVHIEAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEPTLEAEALAAQKIALKV*