AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0464980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464980 MtrunA17_Chr3g0116821 98.569 489 5 1 1 487 1 489 0.0 978
Msa0464980 MtrunA17_Chr7g0259481 61.075 465 156 8 28 486 3 448 4.14e-180 512
Msa0464980 MtrunA17_Chr2g0287231 69.643 224 56 2 88 309 14 227 2.08e-103 308
Msa0464980 MtrunA17_Chr2g0287241 54.444 180 75 2 309 486 30 204 3.57e-63 204
Msa0464980 MtrunA17_Chr3g0114371 44.939 247 94 7 245 486 63 272 1.49e-51 176
Msa0464980 MtrunA17_Chr6g0458111 30.787 445 245 16 86 485 3 429 6.47e-46 166
Msa0464980 MtrunA17_Chr6g0458091 30.787 445 245 16 86 485 3 429 6.47e-46 166
Msa0464980 MtrunA17_Chr1g0200071 30.112 445 248 16 86 485 3 429 1.05e-44 162
Msa0464980 MtrunA17_Chr1g0200091 30.112 445 248 16 86 485 3 429 1.05e-44 162
Msa0464980 MtrunA17_Chr1g0200121 29.888 445 249 16 86 485 3 429 1.70e-44 162
Msa0464980 MtrunA17_Chr4g0005781 29.663 445 250 16 86 485 3 429 2.16e-43 159
Msa0464980 MtrunA17_Chr8g0380091 29.663 445 248 16 90 487 275 701 7.41e-42 158
Msa0464980 MtrunA17_Chr1g0150331 29.587 436 239 14 86 485 3 406 2.26e-39 147
Msa0464980 MtrunA17_Chr1g0193591 30.222 450 235 19 86 482 3 426 6.89e-38 144
Msa0464980 MtrunA17_Chr1g0204031 30.512 449 236 22 86 485 3 424 2.19e-35 140
Msa0464980 MtrunA17_Chr1g0156421 28.442 443 252 15 86 482 3 426 3.17e-35 136
Msa0464980 MtrunA17_Chr8g0340771 26.906 446 265 14 85 485 2 431 1.47e-32 129
Msa0464980 MtrunA17_Chr6g0483121 27.009 448 258 13 87 485 88 515 1.90e-32 129
Msa0464980 MtrunA17_Chr8g0336511 30.000 330 185 11 80 380 67 379 2.99e-31 124
Msa0464980 MtrunA17_Chr8g0392641 26.966 445 262 13 87 485 143 570 8.54e-30 122
Msa0464980 MtrunA17_Chr5g0415391 26.933 401 239 13 115 482 9 388 1.26e-25 108
Msa0464980 MtrunA17_Chr2g0318291 31.720 186 103 3 88 249 7 192 3.32e-23 97.8
Msa0464980 MtrunA17_Chr1g0196251 26.166 386 218 14 87 445 5 350 6.01e-22 97.4
Msa0464980 MtrunA17_Chr4g0040791 30.830 253 161 7 92 341 59 300 9.19e-22 99.0
Msa0464980 MtrunA17_Chr1g0204041 32.026 153 82 3 85 215 2 154 3.94e-18 82.0
Msa0464980 MtrunA17_Chr1g0156411 33.557 149 76 3 80 206 2 149 4.78e-17 78.2
Msa0464980 MtrunA17_Chr2g0319341 26.801 347 200 15 170 482 1 327 2.46e-16 81.3
Msa0464980 MtrunA17_Chr8g0340371 26.357 258 133 10 85 305 2 239 8.72e-16 77.0
Msa0464980 MtrunA17_Chr2g0315521 26.690 281 151 9 87 333 29 288 3.40e-14 74.7
Msa0464980 MtrunA17_Chr2g0312061 26.855 283 148 11 87 333 29 288 6.40e-14 73.9
Msa0464980 MtrunA17_Chr1g0173551 24.845 322 220 8 81 394 73 380 1.94e-13 72.8
Msa0464980 MtrunA17_Chr4g0066951 34.518 197 107 8 85 270 10 195 1.24e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464980 AT4G20360.1 84.698 464 61 4 30 487 17 476 0.0 764
Msa0464980 AT4G20360.2 84.698 464 61 4 30 487 17 476 0.0 764
Msa0464980 AT4G02930.1 67.241 406 117 4 84 486 61 453 0.0 514
Msa0464980 AT1G07920.1 29.345 443 254 14 86 485 3 429 2.67e-44 162
Msa0464980 AT1G07940.4 29.345 443 254 14 86 485 3 429 2.67e-44 162
Msa0464980 AT1G07940.1 29.345 443 254 14 86 485 3 429 2.67e-44 162
Msa0464980 AT1G07940.2 29.345 443 254 14 86 485 3 429 2.67e-44 162
Msa0464980 AT1G07940.3 29.345 443 254 14 86 485 3 429 2.67e-44 162
Msa0464980 AT5G60390.3 29.345 443 254 14 86 485 3 429 2.67e-44 162
Msa0464980 AT5G60390.1 29.345 443 254 14 86 485 3 429 2.67e-44 162
Msa0464980 AT5G60390.2 29.345 443 254 14 86 485 3 429 2.67e-44 162
Msa0464980 AT1G07930.1 29.345 443 254 14 86 485 3 429 2.67e-44 162
Msa0464980 AT5G10630.4 29.452 438 258 14 90 487 315 741 3.07e-38 149
Msa0464980 AT5G10630.1 29.478 441 254 15 90 487 239 665 3.31e-38 148
Msa0464980 AT5G10630.5 29.478 441 254 15 90 487 240 666 3.33e-38 148
Msa0464980 AT5G10630.2 29.478 441 254 15 90 487 240 666 3.33e-38 148
Msa0464980 AT5G10630.3 29.452 438 258 14 90 487 310 736 3.70e-38 148
Msa0464980 AT1G18070.1 25.577 477 287 14 61 486 67 526 9.87e-32 128
Msa0464980 AT1G18070.2 25.577 477 287 14 61 486 67 526 9.87e-32 128
Msa0464980 AT1G07930.2 32.075 265 138 9 86 320 3 255 1.32e-30 122
Msa0464980 AT1G18070.3 25.205 488 286 15 61 486 67 537 5.27e-29 120
Msa0464980 AT2G31060.2 32.157 255 155 8 92 341 61 302 4.20e-21 97.1
Msa0464980 AT2G31060.3 32.046 259 154 9 92 341 61 306 2.82e-20 94.7
Msa0464980 AT5G13650.2 24.289 387 256 10 1 375 1 362 3.21e-16 82.0
Msa0464980 AT2G18720.1 27.143 280 149 11 87 333 35 292 4.76e-16 80.9
Msa0464980 AT2G18720.2 27.143 280 149 11 87 333 35 292 4.76e-16 80.9
Msa0464980 AT1G04170.2 27.046 281 150 10 87 333 30 289 1.72e-15 79.0
Msa0464980 AT1G04170.1 27.046 281 150 10 87 333 30 289 1.72e-15 79.0
Msa0464980 AT5G13650.1 24.620 329 214 8 63 375 51 361 2.07e-15 79.3
Msa0464980 AT4G18330.2 27.076 277 147 10 91 333 40 295 3.07e-15 78.6
Msa0464980 AT4G18330.1 29.843 191 105 7 91 255 40 227 9.47e-14 72.0
Msa0464980 AT5G39900.1 25.743 303 182 10 43 333 20 291 1.06e-12 70.9
Msa0464980 AT2G18720.3 27.368 190 108 5 153 333 33 201 1.16e-12 69.7

Find 183 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCATTGATGCAATTTA+AGG 0.087502 3_3:-65210444 None:intergenic
GATGACATTCCGATTGTTTC+TGG 0.182010 3_3:+65209462 Msa0464980:CDS
GGAAATGTTTCAGAAGATTT+TGG 0.183773 3_3:+65209773 Msa0464980:CDS
CATTCAACTCTATCTAATTA+AGG 0.190638 3_3:-65210500 None:intergenic
TTGTGTTATCCTTTCACTTT+TGG 0.198563 3_3:-65208271 None:intergenic
CACCTTTCTTTGCTGGTTAT+AGG 0.252585 3_3:+65209958 Msa0464980:CDS
TGTTTCTGGTTCAGCGCTAT+TGG 0.258255 3_3:+65209476 Msa0464980:CDS
GGATAAGATTTATAAACTTA+TGG 0.261517 3_3:+65209554 Msa0464980:CDS
ATCCTCAATAGCTAGCAAAA+AGG 0.263547 3_3:-65209625 None:intergenic
GAGGCGAGTTAGGGTTAGTT+TGG 0.273503 3_3:-65208558 None:intergenic
AGGAAGAGGAGAGGCGAGTT+AGG 0.275765 3_3:-65208568 None:intergenic
CGGATTGTCTTTAGTCGAAT+TGG 0.292281 3_3:+65210342 Msa0464980:three_prime_UTR
GGTGTGGGTGTGTGGTGGAT+GGG 0.307678 3_3:-65208489 None:intergenic
GCCTCATATGCGTGCTATAA+TGG 0.308463 3_3:+65210545 Msa0464980:three_prime_UTR
CGCTGCTCTCACCATGGCTT+TGG 0.310361 3_3:+65208757 Msa0464980:CDS
GGAGCGAGTGGTGGTTGGTT+TGG 0.311291 3_3:-65208630 None:intergenic
AGGTGTGGGTGTGTGGTGGA+TGG 0.324998 3_3:-65208490 None:intergenic
AGCGAGAAGGATGTGTTCTT+TGG 0.340715 3_3:-65209017 None:intergenic
ACTTGTGGAGCTTGAAGTTC+GGG 0.340961 3_3:+65209410 Msa0464980:CDS
GAGTGAGGAGTGATAGTTCC+AGG 0.341582 3_3:-65209882 None:intergenic
AGACATTCACCTTTCTTTGC+TGG 0.352845 3_3:+65209951 Msa0464980:CDS
CTCTCGTCTTACGAATTTCC+TGG 0.356869 3_3:+65209438 Msa0464980:CDS
GGGCGGCACGGACGGTGAAA+GGG 0.362945 3_3:-65208655 None:intergenic
ACCGTTGGAGCTGGTGTTAT+CGG 0.367859 3_3:+65210158 Msa0464980:CDS
ATAGGGTTAAATTTAACTTT+CGG 0.368400 3_3:+65210322 Msa0464980:three_prime_UTR
GGAGGATTGTGGAGGGGTTG+AGG 0.370592 3_3:-65208592 None:intergenic
AACTTGTGGAGCTTGAAGTT+CGG 0.370653 3_3:+65209409 Msa0464980:CDS
TTATCACCACGTTTAATAGT+AGG 0.374526 3_3:-65209522 None:intergenic
GGGAGATCTGTTTGTCTTTG+AGG 0.374733 3_3:-65209603 None:intergenic
TGGAGGAGGGAGTGAGGTGG+AGG 0.376046 3_3:-65208610 None:intergenic
GTGTGGGTGTGTGGTGGATG+GGG 0.377960 3_3:-65208488 None:intergenic
GCGAGTGGTGGTTGGTTTGG+AGG 0.378352 3_3:-65208627 None:intergenic
TCTGTTTGTCTTTGAGGGAT+TGG 0.380993 3_3:-65209597 None:intergenic
GGAGATCTGTTTGTCTTTGA+GGG 0.382317 3_3:-65209602 None:intergenic
GGGAGTGAGGTGGAGGATTG+TGG 0.385366 3_3:-65208603 None:intergenic
TATTCAAAGAGGGATGGTTT+TGG 0.389492 3_3:+65209854 Msa0464980:CDS
TTTGGGACGGAGAGTGGTGG+AGG 0.390555 3_3:-65208540 None:intergenic
TGTTCTTTGGTTTGAGGCAT+AGG 0.393640 3_3:-65209004 None:intergenic
CGGGCGGCACGGACGGTGAA+AGG 0.394872 3_3:-65208656 None:intergenic
ATACCACGAGCACGTTCTTC+AGG 0.396105 3_3:-65208830 None:intergenic
AGTGGTGGTTGGTTTGGAGG+AGG 0.397013 3_3:-65208624 None:intergenic
ATTCAACTCTATCTAATTAA+GGG 0.403038 3_3:-65210499 None:intergenic
AGTGGTGGAGGGGTTTGAAA+TGG 0.406070 3_3:-65208528 None:intergenic
GGAAGAGGAGAGGCGAGTTA+GGG 0.409378 3_3:-65208567 None:intergenic
AGGCGAGTTAGGGTTAGTTT+GGG 0.417120 3_3:-65208557 None:intergenic
GTGGTGAAGGTGTGGGTGTG+TGG 0.422895 3_3:-65208497 None:intergenic
GTGGTGGTTGGTTTGGAGGA+GGG 0.429456 3_3:-65208623 None:intergenic
CTGCATCATCACTCTTCAAA+TGG 0.430090 3_3:+65210218 Msa0464980:three_prime_UTR
GGCGGCACGGACGGTGAAAG+GGG 0.436818 3_3:-65208654 None:intergenic
AGTGAGGTGGAGGATTGTGG+AGG 0.438490 3_3:-65208600 None:intergenic
ATTGGCGTTGGAAGCATTAG+TGG 0.440962 3_3:+65209494 Msa0464980:CDS
TATGTCAAGAATATGATTAC+TGG 0.446601 3_3:+65208932 Msa0464980:CDS
AAGAGTGATGATGCAGCAAC+TGG 0.446921 3_3:-65210211 None:intergenic
GGTTAGTTTGGGACGGAGAG+TGG 0.449628 3_3:-65208546 None:intergenic
GTGAGGTGGAGGATTGTGGA+GGG 0.458086 3_3:-65208599 None:intergenic
GTTTGAAATGGAAGCGGAAG+TGG 0.459246 3_3:-65208516 None:intergenic
GATTGTGGAGGGGTTGAGGA+AGG 0.459794 3_3:-65208588 None:intergenic
GGAGGGGTTGAGGAAGGAAG+AGG 0.461332 3_3:-65208582 None:intergenic
ATGAGGTTTGCTATTAGAGA+AGG 0.465146 3_3:+65210128 Msa0464980:CDS
GGTGATGTAGTTGACCTTGT+TGG 0.469409 3_3:+65209714 Msa0464980:CDS
GTTTGGAGGAGGGAGTGAGG+TGG 0.474912 3_3:-65208613 None:intergenic
AATTGCCATGGTTGAATTGA+GGG 0.476810 3_3:-65208423 None:intergenic
TTGGTTTGGAGGAGGGAGTG+AGG 0.480763 3_3:-65208616 None:intergenic
TTCAAGAACACAACCACACT+CGG 0.481392 3_3:-65209351 None:intergenic
CACCATCTTAACACGATCAC+CGG 0.483098 3_3:-65210069 None:intergenic
GGCACGGACGGTGAAAGGGG+AGG 0.483277 3_3:-65208651 None:intergenic
CTCGTTGTCTCCGGTGCCGA+TGG 0.486396 3_3:+65208980 Msa0464980:CDS
CAGAAGATTGATATTCAAAG+AGG 0.486716 3_3:+65209843 Msa0464980:CDS
AGGTTTGCTATTAGAGAAGG+AGG 0.486983 3_3:+65210131 Msa0464980:CDS
ATGAGAACCACAGATGTTAC+CGG 0.488905 3_3:+65209993 Msa0464980:CDS
GGCGCTATTCTCGTTGTCTC+CGG 0.489588 3_3:+65208971 Msa0464980:CDS
TAGTTGACCTTGTTGGTTTG+AGG 0.490161 3_3:+65209721 Msa0464980:CDS
TATCACCACGTTTAATAGTA+GGG 0.492921 3_3:-65209521 None:intergenic
TGCCACCGGAAGAATTGAAA+GGG 0.496315 3_3:+65209677 Msa0464980:CDS
AGTTGACCTTGTTGGTTTGA+GGG 0.496349 3_3:+65209722 Msa0464980:CDS
GGGGAGGAGCGAGTGGTGGT+TGG 0.499727 3_3:-65208635 None:intergenic
CGAATTTGCCACGGGCGGCA+CGG 0.503769 3_3:-65208667 None:intergenic
GTGAAGGTGTGGGTGTGTGG+TGG 0.504838 3_3:-65208494 None:intergenic
TTTGCCACGGGCGGCACGGA+CGG 0.506319 3_3:-65208663 None:intergenic
TTTGCGCTCGAATTTGCCAC+GGG 0.508126 3_3:-65208675 None:intergenic
TCCATTATAGCACGCATATG+AGG 0.508261 3_3:-65210546 None:intergenic
GATTACTGGTGCTGCTCAGA+TGG 0.508789 3_3:+65208946 Msa0464980:CDS
AGGATGTGTTCTTTGGTTTG+AGG 0.511066 3_3:-65209010 None:intergenic
ACACATCCTTCTCGCTAAGC+AGG 0.511666 3_3:+65209024 Msa0464980:CDS
TTGGGACGGAGAGTGGTGGA+GGG 0.512817 3_3:-65208539 None:intergenic
TGGTTCAGCGCTATTGGCGT+TGG 0.516474 3_3:+65209482 Msa0464980:CDS
GCCATGGTCGACGTGGCCGA+TGG 0.516822 3_3:-65208720 None:intergenic
CAATGATGAGATTGTGTTGA+GGG 0.519612 3_3:+65210457 Msa0464980:three_prime_UTR
ATTCCTTGTTCAATAGCCAC+AGG 0.523741 3_3:-65210107 None:intergenic
TAGTTTGGGACGGAGAGTGG+TGG 0.525512 3_3:-65208543 None:intergenic
ACCGCAGACAAGTTGTATGA+AGG 0.526503 3_3:-65210293 None:intergenic
TGAGGAGCTTCTTGAACTTG+TGG 0.528672 3_3:+65209395 Msa0464980:CDS
AGAGAAGGAGGGAAGACCGT+TGG 0.533076 3_3:+65210143 Msa0464980:CDS
ACAATCGGAATGTCATCTCC+AGG 0.533175 3_3:-65209456 None:intergenic
CTTGACATAATCAGCGTGAC+CGG 0.533310 3_3:-65208918 None:intergenic
TTCACCGTCCGTGCCGCCCG+TGG 0.534451 3_3:+65208659 Msa0464980:CDS
TTGACATAATCAGCGTGACC+GGG 0.536185 3_3:-65208917 None:intergenic
GGAGGGAAGACCGTTGGAGC+TGG 0.536449 3_3:+65210149 Msa0464980:CDS
GGCCTATAACCAGCAAAGAA+AGG 0.537786 3_3:-65209960 None:intergenic
AAATTGCCATGGTTGAATTG+AGG 0.540153 3_3:-65208424 None:intergenic
GGTGAAAGGGGAGGAGCGAG+TGG 0.540841 3_3:-65208642 None:intergenic
AAGCGGAAGTGGTGAAGGTG+TGG 0.545502 3_3:-65208505 None:intergenic
TATGCTCATGTTGATTGCCC+CGG 0.546751 3_3:+65208899 Msa0464980:CDS
GAGAGAAATGAGAAGAGAAG+AGG 0.547157 3_3:-65208396 None:intergenic
TGGGACGGAGAGTGGTGGAG+GGG 0.547886 3_3:-65208538 None:intergenic
GGTGAGAGCAGCGGTTAAAG+TGG 0.550233 3_3:-65208747 None:intergenic
CAAGGATGAGGAGTCGAAGA+TGG 0.551958 3_3:+65210040 Msa0464980:CDS
CAATTCATTTCGATAAGAAG+AGG 0.553893 3_3:+65208291 Msa0464980:five_prime_UTR
TTGTATTGTATTGTATTGTG+TGG 0.554728 3_3:-65208329 None:intergenic
GGTTTGAGGCATAGGACCAT+CGG 0.555353 3_3:-65208996 None:intergenic
ACCATGGCTTTGGCTTCTCT+AGG 0.555375 3_3:+65208767 Msa0464980:CDS
TAATTACCTGCTTAGCGAGA+AGG 0.556327 3_3:-65209030 None:intergenic
ACGAGGAGCACTACAGTGAC+CGG 0.557284 3_3:+65209747 Msa0464980:CDS
CCGCAGACAAGTTGTATGAA+GGG 0.558624 3_3:-65210292 None:intergenic
TGAGGTGGAGGATTGTGGAG+GGG 0.559874 3_3:-65208598 None:intergenic
AGCGGAAGTGGTGAAGGTGT+GGG 0.561639 3_3:-65208504 None:intergenic
GGTTTGCTATTAGAGAAGGA+GGG 0.562103 3_3:+65210132 Msa0464980:CDS
AGCGCTGAACCAGAAACAAT+CGG 0.562250 3_3:-65209471 None:intergenic
CATCTCAACATCGGAACCAT+CGG 0.564830 3_3:+65208704 Msa0464980:CDS
AGGCATAGGACCATCGGCAC+CGG 0.568713 3_3:-65208990 None:intergenic
CGCGTCACTCCAAAAGTGAA+AGG 0.568903 3_3:+65208262 Msa0464980:five_prime_UTR
GAGTTAGGGTTAGTTTGGGA+CGG 0.569223 3_3:-65208553 None:intergenic
GGAGGGGTTTGAAATGGAAG+CGG 0.569995 3_3:-65208522 None:intergenic
GATTGATATTCAAAGAGGGA+TGG 0.573204 3_3:+65209848 Msa0464980:CDS
TCCGATAACACCAGCTCCAA+CGG 0.573833 3_3:-65210159 None:intergenic
GAAAGGGGAGGAGCGAGTGG+TGG 0.575537 3_3:-65208639 None:intergenic
TTGCCACCGGAAGAATTGAA+AGG 0.577024 3_3:+65209676 Msa0464980:CDS
GTCCCTGTGGCTATTGAACA+AGG 0.580048 3_3:+65210104 Msa0464980:CDS
GGTTGAGGAAGGAAGAGGAG+AGG 0.580563 3_3:-65208577 None:intergenic
TGCTATGGCTGGTGATAACG+TGG 0.580824 3_3:+65209800 Msa0464980:CDS
TTAAACGTGGTGATAACGAG+TGG 0.581448 3_3:+65209529 Msa0464980:CDS
TGGCTATTGAACAAGGAATG+AGG 0.586309 3_3:+65210111 Msa0464980:CDS
TCTTTCGGAGTGAAGAGAAG+AGG 0.587110 3_3:-65208355 None:intergenic
TTCTCTTCACTCCGAAAGAG+AGG 0.587313 3_3:+65208359 Msa0464980:five_prime_UTR
TATCATGAATGACAAGGATG+AGG 0.592077 3_3:+65210028 Msa0464980:CDS
GCCCGGTGATCGTGTTAAGA+TGG 0.593994 3_3:+65210067 Msa0464980:CDS
AATTAAGGGTAAAACTGTAA+CGG 0.602876 3_3:-65210485 None:intergenic
GAAGCTCCTCATCATCCACT+TGG 0.605442 3_3:-65209383 None:intergenic
ACCATCTTAACACGATCACC+GGG 0.606257 3_3:-65210068 None:intergenic
ACCATCGGCCACGTCGACCA+TGG 0.607333 3_3:+65208719 Msa0464980:CDS
AGAAGATTGATATTCAAAGA+GGG 0.608439 3_3:+65209844 Msa0464980:CDS
TGAAGAAATTGAAATTGCCA+TGG 0.612079 3_3:-65208435 None:intergenic
CAACTTACAAAACATCCCGA+TGG 0.612642 3_3:-65210376 None:intergenic
GCGCTCGAATTTGCCACGGG+CGG 0.613444 3_3:-65208672 None:intergenic
GGTTGTGTTCTTGAACAAGC+AGG 0.616431 3_3:+65209359 Msa0464980:CDS
CTTCTGAAACATTTCCACTC+CGG 0.617102 3_3:-65209766 None:intergenic
AATGGAAGCGGAAGTGGTGA+AGG 0.617331 3_3:-65208510 None:intergenic
GCAGGACCAAGTGGATGATG+AGG 0.618136 3_3:+65209377 Msa0464980:CDS
CCCTTCATACAACTTGTCTG+CGG 0.619908 3_3:+65210292 Msa0464980:three_prime_UTR
ATGGTTCCGATGTTGAGATG+AGG 0.622236 3_3:-65208701 None:intergenic
ACCTAGAGAAGCCAAAGCCA+TGG 0.627081 3_3:-65208768 None:intergenic
CTTCACCCTCAATTCAACCA+TGG 0.628488 3_3:+65208418 Msa0464980:exon
ACTGGTGCTGCTCAGATGGA+CGG 0.628856 3_3:+65208950 Msa0464980:CDS
CAAAGCCATGGTGAGAGCAG+CGG 0.629976 3_3:-65208756 None:intergenic
TTTAACCGCTGCTCTCACCA+TGG 0.631615 3_3:+65208751 Msa0464980:CDS
GGTCGTGGAACAGTTGCCAC+CGG 0.632950 3_3:+65209663 Msa0464980:CDS
GCTCCTGAAGAACGTGCTCG+TGG 0.633471 3_3:+65208827 Msa0464980:CDS
TTGTTGGTTTGAGGGAAACG+AGG 0.634090 3_3:+65209730 Msa0464980:CDS
GAGTCGAAGATGGTGATGCC+CGG 0.639572 3_3:+65210050 Msa0464980:CDS
CGGTGATCGTGTTAAGATGG+TGG 0.643732 3_3:+65210070 Msa0464980:CDS
TCGTTTCCCTCAAACCAACA+AGG 0.646895 3_3:-65209728 None:intergenic
ACGTGGTGATAACGAGTGGG+TGG 0.647355 3_3:+65209533 Msa0464980:CDS
GCATGAACATCGATCAGAGG+AGG 0.647518 3_3:-65210634 None:intergenic
TGACATAATCAGCGTGACCG+GGG 0.648541 3_3:-65208916 None:intergenic
TTAGGTTGGTGTCCCGAGTG+TGG 0.648750 3_3:+65209338 Msa0464980:intron
GGTTGAACTCATTGTCCCTG+TGG 0.649883 3_3:+65210091 Msa0464980:CDS
TCAAGAACACAACCACACTC+GGG 0.657377 3_3:-65209350 None:intergenic
TTCCTTGTTCAATAGCCACA+GGG 0.659471 3_3:-65210106 None:intergenic
ATACATTCAAACTTAGAGTG+AGG 0.660448 3_3:-65209897 None:intergenic
CTTGAACAAGCAGGACCAAG+TGG 0.660677 3_3:+65209368 Msa0464980:CDS
TAAACGTGGTGATAACGAGT+GGG 0.671761 3_3:+65209530 Msa0464980:CDS
ATAGCATGAACATCGATCAG+AGG 0.673196 3_3:-65210637 None:intergenic
CCACCGGAAGAATTGAAAGG+GGG 0.679857 3_3:+65209679 Msa0464980:CDS
AACGTGGGTTTGTTGCTGAG+AGG 0.684650 3_3:+65209816 Msa0464980:CDS
GCCACCGGAAGAATTGAAAG+GGG 0.695004 3_3:+65209678 Msa0464980:CDS
GTGGTTCTCATGTAAAACTG+AGG 0.696417 3_3:-65209981 None:intergenic
TACATCTATCATGAATGACA+AGG 0.699849 3_3:+65210022 Msa0464980:CDS
TGAATGTTACTCATAATCTG+TGG 0.702965 3_3:+65210517 Msa0464980:three_prime_UTR
TCAATGATGAGATTGTGTTG+AGG 0.708905 3_3:+65210456 Msa0464980:three_prime_UTR
GAGCACTACAGTGACCGGAG+TGG 0.711476 3_3:+65209752 Msa0464980:CDS
GCAAACCCTACTATTAAACG+TGG 0.729265 3_3:+65209516 Msa0464980:CDS
GCTATGGCTGGTGATAACGT+GGG 0.737390 3_3:+65209801 Msa0464980:CDS
TGAAGCAAAGTAGTGCACCG+CGG 0.776250 3_3:+65208239 Msa0464980:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATACTAATAATTTTAGTT+AGG + chr3_3:65209101-65209120 Msa0464980:intron 10.0%
!!! TAATACTAATAATTTTAGTT+AGG + chr3_3:65209101-65209120 Msa0464980:intron 10.0%
!!! AATTTCATCGTATTTTTTAG+GGG - chr3_3:65208801-65208820 None:intergenic 20.0%
!!! CAATTTCATCGTATTTTTTA+GGG - chr3_3:65208802-65208821 None:intergenic 20.0%
!!! TCAATTTCATCGTATTTTTT+AGG - chr3_3:65208803-65208822 None:intergenic 20.0%
!!! TCTAGTCTGTATATAAATTT+TGG + chr3_3:65209236-65209255 Msa0464980:intron 20.0%
!!! ATGTTTGTTTGTTTTTTGAT+TGG + chr3_3:65209307-65209326 Msa0464980:intron 20.0%
!! GGATAAGATTTATAAACTTA+TGG + chr3_3:65209554-65209573 Msa0464980:CDS 20.0%
!!! ATAGGGTTAAATTTAACTTT+CGG + chr3_3:65210322-65210341 Msa0464980:three_prime_UTR 20.0%
!! ATTCAACTCTATCTAATTAA+GGG - chr3_3:65210502-65210521 None:intergenic 20.0%
!!! AATTTCATCGTATTTTTTAG+GGG - chr3_3:65208801-65208820 None:intergenic 20.0%
!!! CAATTTCATCGTATTTTTTA+GGG - chr3_3:65208802-65208821 None:intergenic 20.0%
!!! TCAATTTCATCGTATTTTTT+AGG - chr3_3:65208803-65208822 None:intergenic 20.0%
!!! TCTAGTCTGTATATAAATTT+TGG + chr3_3:65209236-65209255 Msa0464980:intron 20.0%
!!! ATGTTTGTTTGTTTTTTGAT+TGG + chr3_3:65209307-65209326 Msa0464980:intron 20.0%
!! GGATAAGATTTATAAACTTA+TGG + chr3_3:65209554-65209573 Msa0464980:CDS 20.0%
!!! ATAGGGTTAAATTTAACTTT+CGG + chr3_3:65210322-65210341 Msa0464980:three_prime_UTR 20.0%
!! ATTCAACTCTATCTAATTAA+GGG - chr3_3:65210502-65210521 None:intergenic 20.0%
! TTAAAAAATCTAATCTGCAG+TGG + chr3_3:65208205-65208224 Msa0464980:five_prime_UTR 25.0%
! TAAAAAATCTAATCTGCAGT+GGG + chr3_3:65208206-65208225 Msa0464980:five_prime_UTR 25.0%
! TTGTATTGTATTGTATTGTG+TGG - chr3_3:65208332-65208351 None:intergenic 25.0%
! TATGTCAAGAATATGATTAC+TGG + chr3_3:65208932-65208951 Msa0464980:CDS 25.0%
!!! TTTTGAATCGTTGGTTTTAA+TGG + chr3_3:65209279-65209298 Msa0464980:intron 25.0%
!!! TTGTTTGTTTTTTGATTGGT+TGG + chr3_3:65209311-65209330 Msa0464980:intron 25.0%
! AGAAGATTGATATTCAAAGA+GGG + chr3_3:65209844-65209863 Msa0464980:CDS 25.0%
!!! TATTGTGTATGTTTTGAAGA+AGG + chr3_3:65209917-65209936 Msa0464980:CDS 25.0%
!!! ATTGGATACTATTTTTCCAT+CGG + chr3_3:65210360-65210379 Msa0464980:three_prime_UTR 25.0%
! AATTAAGGGTAAAACTGTAA+CGG - chr3_3:65210488-65210507 None:intergenic 25.0%
! CATTCAACTCTATCTAATTA+AGG - chr3_3:65210503-65210522 None:intergenic 25.0%
! TTAAAAAATCTAATCTGCAG+TGG + chr3_3:65208205-65208224 Msa0464980:five_prime_UTR 25.0%
! TAAAAAATCTAATCTGCAGT+GGG + chr3_3:65208206-65208225 Msa0464980:five_prime_UTR 25.0%
! TTGTATTGTATTGTATTGTG+TGG - chr3_3:65208332-65208351 None:intergenic 25.0%
! TATGTCAAGAATATGATTAC+TGG + chr3_3:65208932-65208951 Msa0464980:CDS 25.0%
!!! TTTTGAATCGTTGGTTTTAA+TGG + chr3_3:65209279-65209298 Msa0464980:intron 25.0%
!!! TTGTTTGTTTTTTGATTGGT+TGG + chr3_3:65209311-65209330 Msa0464980:intron 25.0%
! AGAAGATTGATATTCAAAGA+GGG + chr3_3:65209844-65209863 Msa0464980:CDS 25.0%
!!! TATTGTGTATGTTTTGAAGA+AGG + chr3_3:65209917-65209936 Msa0464980:CDS 25.0%
!!! ATTGGATACTATTTTTCCAT+CGG + chr3_3:65210360-65210379 Msa0464980:three_prime_UTR 25.0%
! AATTAAGGGTAAAACTGTAA+CGG - chr3_3:65210488-65210507 None:intergenic 25.0%
! CATTCAACTCTATCTAATTA+AGG - chr3_3:65210503-65210522 None:intergenic 25.0%
! TTGTGTTATCCTTTCACTTT+TGG - chr3_3:65208274-65208293 None:intergenic 30.0%
CAATTCATTTCGATAAGAAG+AGG + chr3_3:65208291-65208310 Msa0464980:five_prime_UTR 30.0%
!! TGTTTTGTTATCCTCTCTTT+CGG - chr3_3:65208373-65208392 None:intergenic 30.0%
TGAAGAAATTGAAATTGCCA+TGG - chr3_3:65208438-65208457 None:intergenic 30.0%
! TTGGTGATTATCTTCATGTA+TGG + chr3_3:65209255-65209274 Msa0464980:intron 30.0%
! ATGTATGGTTTTTGAATCGT+TGG + chr3_3:65209270-65209289 Msa0464980:intron 30.0%
!! TTTTGATTGGTTGGTATCTT+AGG + chr3_3:65209320-65209339 Msa0464980:intron 30.0%
TATCACCACGTTTAATAGTA+GGG - chr3_3:65209524-65209543 None:intergenic 30.0%
TTATCACCACGTTTAATAGT+AGG - chr3_3:65209525-65209544 None:intergenic 30.0%
! GGAAATGTTTCAGAAGATTT+TGG + chr3_3:65209773-65209792 Msa0464980:CDS 30.0%
CAGAAGATTGATATTCAAAG+AGG + chr3_3:65209843-65209862 Msa0464980:CDS 30.0%
ATACATTCAAACTTAGAGTG+AGG - chr3_3:65209900-65209919 None:intergenic 30.0%
!!! TATGTTTTGAAGAAGGAAGA+AGG + chr3_3:65209924-65209943 Msa0464980:CDS 30.0%
! CATGATAGATGTAACTTTTC+CGG - chr3_3:65210015-65210034 None:intergenic 30.0%
TACATCTATCATGAATGACA+AGG + chr3_3:65210022-65210041 Msa0464980:CDS 30.0%
! TTGTCTGCGGTAATTTTATA+GGG + chr3_3:65210305-65210324 Msa0464980:three_prime_UTR 30.0%
!! TTGGATACTATTTTTCCATC+GGG + chr3_3:65210361-65210380 Msa0464980:three_prime_UTR 30.0%
CTCATCATTGATGCAATTTA+AGG - chr3_3:65210447-65210466 None:intergenic 30.0%
TGAATGTTACTCATAATCTG+TGG + chr3_3:65210517-65210536 Msa0464980:three_prime_UTR 30.0%
! TTGTGTTATCCTTTCACTTT+TGG - chr3_3:65208274-65208293 None:intergenic 30.0%
CAATTCATTTCGATAAGAAG+AGG + chr3_3:65208291-65208310 Msa0464980:five_prime_UTR 30.0%
!! TGTTTTGTTATCCTCTCTTT+CGG - chr3_3:65208373-65208392 None:intergenic 30.0%
TGAAGAAATTGAAATTGCCA+TGG - chr3_3:65208438-65208457 None:intergenic 30.0%
! TTGGTGATTATCTTCATGTA+TGG + chr3_3:65209255-65209274 Msa0464980:intron 30.0%
! ATGTATGGTTTTTGAATCGT+TGG + chr3_3:65209270-65209289 Msa0464980:intron 30.0%
!! TTTTGATTGGTTGGTATCTT+AGG + chr3_3:65209320-65209339 Msa0464980:intron 30.0%
TATCACCACGTTTAATAGTA+GGG - chr3_3:65209524-65209543 None:intergenic 30.0%
TTATCACCACGTTTAATAGT+AGG - chr3_3:65209525-65209544 None:intergenic 30.0%
! GGAAATGTTTCAGAAGATTT+TGG + chr3_3:65209773-65209792 Msa0464980:CDS 30.0%
CAGAAGATTGATATTCAAAG+AGG + chr3_3:65209843-65209862 Msa0464980:CDS 30.0%
ATACATTCAAACTTAGAGTG+AGG - chr3_3:65209900-65209919 None:intergenic 30.0%
!!! TATGTTTTGAAGAAGGAAGA+AGG + chr3_3:65209924-65209943 Msa0464980:CDS 30.0%
! CATGATAGATGTAACTTTTC+CGG - chr3_3:65210015-65210034 None:intergenic 30.0%
TACATCTATCATGAATGACA+AGG + chr3_3:65210022-65210041 Msa0464980:CDS 30.0%
! TTGTCTGCGGTAATTTTATA+GGG + chr3_3:65210305-65210324 Msa0464980:three_prime_UTR 30.0%
!! TTGGATACTATTTTTCCATC+GGG + chr3_3:65210361-65210380 Msa0464980:three_prime_UTR 30.0%
CTCATCATTGATGCAATTTA+AGG - chr3_3:65210447-65210466 None:intergenic 30.0%
TGAATGTTACTCATAATCTG+TGG + chr3_3:65210517-65210536 Msa0464980:three_prime_UTR 30.0%
AATTGCCATGGTTGAATTGA+GGG - chr3_3:65208426-65208445 None:intergenic 35.0%
AAATTGCCATGGTTGAATTG+AGG - chr3_3:65208427-65208446 None:intergenic 35.0%
!! TGATGAGAGTTTGAGTTTTG+TGG - chr3_3:65208468-65208487 None:intergenic 35.0%
AAAAAGCCTCATCTCAACAT+CGG + chr3_3:65208695-65208714 Msa0464980:CDS 35.0%
GAATTAATGCAACAGCTGTA+TGG + chr3_3:65209178-65209197 Msa0464980:intron 35.0%
TCCTCAATAGCTAGCAAAAA+GGG - chr3_3:65209627-65209646 None:intergenic 35.0%
ATCCTCAATAGCTAGCAAAA+AGG - chr3_3:65209628-65209647 None:intergenic 35.0%
GATTGATATTCAAAGAGGGA+TGG + chr3_3:65209848-65209867 Msa0464980:CDS 35.0%
! TATTCAAAGAGGGATGGTTT+TGG + chr3_3:65209854-65209873 Msa0464980:CDS 35.0%
TATCATGAATGACAAGGATG+AGG + chr3_3:65210028-65210047 Msa0464980:CDS 35.0%
!! ATGAGGTTTGCTATTAGAGA+AGG + chr3_3:65210128-65210147 Msa0464980:CDS 35.0%
! CTTGTCTGCGGTAATTTTAT+AGG + chr3_3:65210304-65210323 Msa0464980:three_prime_UTR 35.0%
TCAATGATGAGATTGTGTTG+AGG + chr3_3:65210456-65210475 Msa0464980:three_prime_UTR 35.0%
CAATGATGAGATTGTGTTGA+GGG + chr3_3:65210457-65210476 Msa0464980:three_prime_UTR 35.0%
AATTGCCATGGTTGAATTGA+GGG - chr3_3:65208426-65208445 None:intergenic 35.0%
AAATTGCCATGGTTGAATTG+AGG - chr3_3:65208427-65208446 None:intergenic 35.0%
!! TGATGAGAGTTTGAGTTTTG+TGG - chr3_3:65208468-65208487 None:intergenic 35.0%
AAAAAGCCTCATCTCAACAT+CGG + chr3_3:65208695-65208714 Msa0464980:CDS 35.0%
GAATTAATGCAACAGCTGTA+TGG + chr3_3:65209178-65209197 Msa0464980:intron 35.0%
TCCTCAATAGCTAGCAAAAA+GGG - chr3_3:65209627-65209646 None:intergenic 35.0%
ATCCTCAATAGCTAGCAAAA+AGG - chr3_3:65209628-65209647 None:intergenic 35.0%
GATTGATATTCAAAGAGGGA+TGG + chr3_3:65209848-65209867 Msa0464980:CDS 35.0%
! TATTCAAAGAGGGATGGTTT+TGG + chr3_3:65209854-65209873 Msa0464980:CDS 35.0%
TATCATGAATGACAAGGATG+AGG + chr3_3:65210028-65210047 Msa0464980:CDS 35.0%
!! ATGAGGTTTGCTATTAGAGA+AGG + chr3_3:65210128-65210147 Msa0464980:CDS 35.0%
! CTTGTCTGCGGTAATTTTAT+AGG + chr3_3:65210304-65210323 Msa0464980:three_prime_UTR 35.0%
TCAATGATGAGATTGTGTTG+AGG + chr3_3:65210456-65210475 Msa0464980:three_prime_UTR 35.0%
CAATGATGAGATTGTGTTGA+GGG + chr3_3:65210457-65210476 Msa0464980:three_prime_UTR 35.0%
GAGAGAAATGAGAAGAGAAG+AGG - chr3_3:65208399-65208418 None:intergenic 40.0%
!! TGTTCTTTGGTTTGAGGCAT+AGG - chr3_3:65209007-65209026 None:intergenic 40.0%
!! AGGATGTGTTCTTTGGTTTG+AGG - chr3_3:65209013-65209032 None:intergenic 40.0%
TAATTACCTGCTTAGCGAGA+AGG - chr3_3:65209033-65209052 None:intergenic 40.0%
GCAACAGCTGTATGGAATTT+AGG + chr3_3:65209186-65209205 Msa0464980:intron 40.0%
! GATTGGTTGGTATCTTAGGT+TGG + chr3_3:65209324-65209343 Msa0464980:intron 40.0%
TTCAAGAACACAACCACACT+CGG - chr3_3:65209354-65209373 None:intergenic 40.0%
AACTTGTGGAGCTTGAAGTT+CGG + chr3_3:65209409-65209428 Msa0464980:CDS 40.0%
GATGACATTCCGATTGTTTC+TGG + chr3_3:65209462-65209481 Msa0464980:CDS 40.0%
GCAAACCCTACTATTAAACG+TGG + chr3_3:65209516-65209535 Msa0464980:CDS 40.0%
! TTAAACGTGGTGATAACGAG+TGG + chr3_3:65209529-65209548 Msa0464980:CDS 40.0%
! TAAACGTGGTGATAACGAGT+GGG + chr3_3:65209530-65209549 Msa0464980:CDS 40.0%
! TCTGTTTGTCTTTGAGGGAT+TGG - chr3_3:65209600-65209619 None:intergenic 40.0%
GGAGATCTGTTTGTCTTTGA+GGG - chr3_3:65209605-65209624 None:intergenic 40.0%
CCTCAATAGCTAGCAAAAAG+GGG - chr3_3:65209626-65209645 None:intergenic 40.0%
! GAGGATGTGTTTTCAATCAC+TGG + chr3_3:65209642-65209661 Msa0464980:CDS 40.0%
!! AATTGAAAGGGGGCTTGTTA+AGG + chr3_3:65209689-65209708 Msa0464980:CDS 40.0%
!! TAGTTGACCTTGTTGGTTTG+AGG + chr3_3:65209721-65209740 Msa0464980:CDS 40.0%
!! AGTTGACCTTGTTGGTTTGA+GGG + chr3_3:65209722-65209741 Msa0464980:CDS 40.0%
!! CTTCTGAAACATTTCCACTC+CGG - chr3_3:65209769-65209788 None:intergenic 40.0%
! GAAGATTTTGGACGATGCTA+TGG + chr3_3:65209785-65209804 Msa0464980:CDS 40.0%
!!! GTTTTGAAGAAGGAAGAAGG+TGG + chr3_3:65209927-65209946 Msa0464980:CDS 40.0%
AGACATTCACCTTTCTTTGC+TGG + chr3_3:65209951-65209970 Msa0464980:CDS 40.0%
! CACCTTTCTTTGCTGGTTAT+AGG + chr3_3:65209958-65209977 Msa0464980:CDS 40.0%
GTGGTTCTCATGTAAAACTG+AGG - chr3_3:65209984-65210003 None:intergenic 40.0%
ATGAGAACCACAGATGTTAC+CGG + chr3_3:65209993-65210012 Msa0464980:CDS 40.0%
! AACTTTTCCGGTAACATCTG+TGG - chr3_3:65210003-65210022 None:intergenic 40.0%
TTCCTTGTTCAATAGCCACA+GGG - chr3_3:65210109-65210128 None:intergenic 40.0%
ATTCCTTGTTCAATAGCCAC+AGG - chr3_3:65210110-65210129 None:intergenic 40.0%
TGGCTATTGAACAAGGAATG+AGG + chr3_3:65210111-65210130 Msa0464980:CDS 40.0%
!! AGGTTTGCTATTAGAGAAGG+AGG + chr3_3:65210131-65210150 Msa0464980:CDS 40.0%
!! GGTTTGCTATTAGAGAAGGA+GGG + chr3_3:65210132-65210151 Msa0464980:CDS 40.0%
CTGCATCATCACTCTTCAAA+TGG + chr3_3:65210218-65210237 Msa0464980:three_prime_UTR 40.0%
CGGATTGTCTTTAGTCGAAT+TGG + chr3_3:65210342-65210361 Msa0464980:three_prime_UTR 40.0%
CAACTTACAAAACATCCCGA+TGG - chr3_3:65210379-65210398 None:intergenic 40.0%
TCCATTATAGCACGCATATG+AGG - chr3_3:65210549-65210568 None:intergenic 40.0%
GAGAGAAATGAGAAGAGAAG+AGG - chr3_3:65208399-65208418 None:intergenic 40.0%
!! TGTTCTTTGGTTTGAGGCAT+AGG - chr3_3:65209007-65209026 None:intergenic 40.0%
!! AGGATGTGTTCTTTGGTTTG+AGG - chr3_3:65209013-65209032 None:intergenic 40.0%
TAATTACCTGCTTAGCGAGA+AGG - chr3_3:65209033-65209052 None:intergenic 40.0%
GCAACAGCTGTATGGAATTT+AGG + chr3_3:65209186-65209205 Msa0464980:intron 40.0%
! GATTGGTTGGTATCTTAGGT+TGG + chr3_3:65209324-65209343 Msa0464980:intron 40.0%
TTCAAGAACACAACCACACT+CGG - chr3_3:65209354-65209373 None:intergenic 40.0%
AACTTGTGGAGCTTGAAGTT+CGG + chr3_3:65209409-65209428 Msa0464980:CDS 40.0%
GATGACATTCCGATTGTTTC+TGG + chr3_3:65209462-65209481 Msa0464980:CDS 40.0%
GCAAACCCTACTATTAAACG+TGG + chr3_3:65209516-65209535 Msa0464980:CDS 40.0%
! TTAAACGTGGTGATAACGAG+TGG + chr3_3:65209529-65209548 Msa0464980:CDS 40.0%
! TAAACGTGGTGATAACGAGT+GGG + chr3_3:65209530-65209549 Msa0464980:CDS 40.0%
! TCTGTTTGTCTTTGAGGGAT+TGG - chr3_3:65209600-65209619 None:intergenic 40.0%
GGAGATCTGTTTGTCTTTGA+GGG - chr3_3:65209605-65209624 None:intergenic 40.0%
CCTCAATAGCTAGCAAAAAG+GGG - chr3_3:65209626-65209645 None:intergenic 40.0%
! GAGGATGTGTTTTCAATCAC+TGG + chr3_3:65209642-65209661 Msa0464980:CDS 40.0%
!! AATTGAAAGGGGGCTTGTTA+AGG + chr3_3:65209689-65209708 Msa0464980:CDS 40.0%
!! TAGTTGACCTTGTTGGTTTG+AGG + chr3_3:65209721-65209740 Msa0464980:CDS 40.0%
!! AGTTGACCTTGTTGGTTTGA+GGG + chr3_3:65209722-65209741 Msa0464980:CDS 40.0%
!! CTTCTGAAACATTTCCACTC+CGG - chr3_3:65209769-65209788 None:intergenic 40.0%
! GAAGATTTTGGACGATGCTA+TGG + chr3_3:65209785-65209804 Msa0464980:CDS 40.0%
!!! GTTTTGAAGAAGGAAGAAGG+TGG + chr3_3:65209927-65209946 Msa0464980:CDS 40.0%
AGACATTCACCTTTCTTTGC+TGG + chr3_3:65209951-65209970 Msa0464980:CDS 40.0%
! CACCTTTCTTTGCTGGTTAT+AGG + chr3_3:65209958-65209977 Msa0464980:CDS 40.0%
GTGGTTCTCATGTAAAACTG+AGG - chr3_3:65209984-65210003 None:intergenic 40.0%
ATGAGAACCACAGATGTTAC+CGG + chr3_3:65209993-65210012 Msa0464980:CDS 40.0%
! AACTTTTCCGGTAACATCTG+TGG - chr3_3:65210003-65210022 None:intergenic 40.0%
TTCCTTGTTCAATAGCCACA+GGG - chr3_3:65210109-65210128 None:intergenic 40.0%
ATTCCTTGTTCAATAGCCAC+AGG - chr3_3:65210110-65210129 None:intergenic 40.0%
TGGCTATTGAACAAGGAATG+AGG + chr3_3:65210111-65210130 Msa0464980:CDS 40.0%
!! AGGTTTGCTATTAGAGAAGG+AGG + chr3_3:65210131-65210150 Msa0464980:CDS 40.0%
!! GGTTTGCTATTAGAGAAGGA+GGG + chr3_3:65210132-65210151 Msa0464980:CDS 40.0%
CTGCATCATCACTCTTCAAA+TGG + chr3_3:65210218-65210237 Msa0464980:three_prime_UTR 40.0%
CGGATTGTCTTTAGTCGAAT+TGG + chr3_3:65210342-65210361 Msa0464980:three_prime_UTR 40.0%
CAACTTACAAAACATCCCGA+TGG - chr3_3:65210379-65210398 None:intergenic 40.0%
TCCATTATAGCACGCATATG+AGG - chr3_3:65210549-65210568 None:intergenic 40.0%
TCTTTCGGAGTGAAGAGAAG+AGG - chr3_3:65208358-65208377 None:intergenic 45.0%
TTCTCTTCACTCCGAAAGAG+AGG + chr3_3:65208359-65208378 Msa0464980:five_prime_UTR 45.0%
CTTCACCCTCAATTCAACCA+TGG + chr3_3:65208418-65208437 Msa0464980:exon 45.0%
! GTTTGAAATGGAAGCGGAAG+TGG - chr3_3:65208519-65208538 None:intergenic 45.0%
!! GAGTTAGGGTTAGTTTGGGA+CGG - chr3_3:65208556-65208575 None:intergenic 45.0%
!! AGGCGAGTTAGGGTTAGTTT+GGG - chr3_3:65208560-65208579 None:intergenic 45.0%
! TTTTGCGCTCGAATTTGCCA+CGG - chr3_3:65208679-65208698 None:intergenic 45.0%
ATGGTTCCGATGTTGAGATG+AGG - chr3_3:65208704-65208723 None:intergenic 45.0%
CATCTCAACATCGGAACCAT+CGG + chr3_3:65208704-65208723 Msa0464980:CDS 45.0%
!! CGGTTAAAGTGGTTTTGCCA+TGG - chr3_3:65208739-65208758 None:intergenic 45.0%
! TATGCTCATGTTGATTGCCC+CGG + chr3_3:65208899-65208918 Msa0464980:CDS 45.0%
TTGACATAATCAGCGTGACC+GGG - chr3_3:65208920-65208939 None:intergenic 45.0%
CTTGACATAATCAGCGTGAC+CGG - chr3_3:65208921-65208940 None:intergenic 45.0%
AGCGAGAAGGATGTGTTCTT+TGG - chr3_3:65209020-65209039 None:intergenic 45.0%
TCAAGAACACAACCACACTC+GGG - chr3_3:65209353-65209372 None:intergenic 45.0%
GGTTGTGTTCTTGAACAAGC+AGG + chr3_3:65209359-65209378 Msa0464980:CDS 45.0%
TGAGGAGCTTCTTGAACTTG+TGG + chr3_3:65209395-65209414 Msa0464980:CDS 45.0%
ACTTGTGGAGCTTGAAGTTC+GGG + chr3_3:65209410-65209429 Msa0464980:CDS 45.0%
CTCTCGTCTTACGAATTTCC+TGG + chr3_3:65209438-65209457 Msa0464980:CDS 45.0%
ACAATCGGAATGTCATCTCC+AGG - chr3_3:65209459-65209478 None:intergenic 45.0%
! AGCGCTGAACCAGAAACAAT+CGG - chr3_3:65209474-65209493 None:intergenic 45.0%
!! TGTTTCTGGTTCAGCGCTAT+TGG + chr3_3:65209476-65209495 Msa0464980:CDS 45.0%
!! ATTGGCGTTGGAAGCATTAG+TGG + chr3_3:65209494-65209513 Msa0464980:CDS 45.0%
GGGAGATCTGTTTGTCTTTG+AGG - chr3_3:65209606-65209625 None:intergenic 45.0%
! CCCCTTTTTGCTAGCTATTG+AGG + chr3_3:65209623-65209642 Msa0464980:CDS 45.0%
! GTGTTTTCAATCACTGGTCG+TGG + chr3_3:65209648-65209667 Msa0464980:CDS 45.0%
TTGCCACCGGAAGAATTGAA+AGG + chr3_3:65209676-65209695 Msa0464980:CDS 45.0%
TGCCACCGGAAGAATTGAAA+GGG + chr3_3:65209677-65209696 Msa0464980:CDS 45.0%
AAGCCCCCTTTCAATTCTTC+CGG - chr3_3:65209685-65209704 None:intergenic 45.0%
GGTGATGTAGTTGACCTTGT+TGG + chr3_3:65209714-65209733 Msa0464980:CDS 45.0%
TCGTTTCCCTCAAACCAACA+AGG - chr3_3:65209731-65209750 None:intergenic 45.0%
!! TTGTTGGTTTGAGGGAAACG+AGG + chr3_3:65209730-65209749 Msa0464980:CDS 45.0%
! ATTTTGGACGATGCTATGGC+TGG + chr3_3:65209789-65209808 Msa0464980:CDS 45.0%
GGCCTATAACCAGCAAAGAA+AGG - chr3_3:65209963-65209982 None:intergenic 45.0%
ACCATCTTAACACGATCACC+GGG - chr3_3:65210071-65210090 None:intergenic 45.0%
CACCATCTTAACACGATCAC+CGG - chr3_3:65210072-65210091 None:intergenic 45.0%
! AAGAGTGATGATGCAGCAAC+TGG - chr3_3:65210214-65210233 None:intergenic 45.0%
CCGCAGACAAGTTGTATGAA+GGG - chr3_3:65210295-65210314 None:intergenic 45.0%
CCCTTCATACAACTTGTCTG+CGG + chr3_3:65210292-65210311 Msa0464980:three_prime_UTR 45.0%
ACCGCAGACAAGTTGTATGA+AGG - chr3_3:65210296-65210315 None:intergenic 45.0%
GCCTCATATGCGTGCTATAA+TGG + chr3_3:65210545-65210564 Msa0464980:three_prime_UTR 45.0%
TCTTTCGGAGTGAAGAGAAG+AGG - chr3_3:65208358-65208377 None:intergenic 45.0%
TTCTCTTCACTCCGAAAGAG+AGG + chr3_3:65208359-65208378 Msa0464980:five_prime_UTR 45.0%
CTTCACCCTCAATTCAACCA+TGG + chr3_3:65208418-65208437 Msa0464980:exon 45.0%
! GTTTGAAATGGAAGCGGAAG+TGG - chr3_3:65208519-65208538 None:intergenic 45.0%
!! GAGTTAGGGTTAGTTTGGGA+CGG - chr3_3:65208556-65208575 None:intergenic 45.0%
!! AGGCGAGTTAGGGTTAGTTT+GGG - chr3_3:65208560-65208579 None:intergenic 45.0%
! TTTTGCGCTCGAATTTGCCA+CGG - chr3_3:65208679-65208698 None:intergenic 45.0%
ATGGTTCCGATGTTGAGATG+AGG - chr3_3:65208704-65208723 None:intergenic 45.0%
CATCTCAACATCGGAACCAT+CGG + chr3_3:65208704-65208723 Msa0464980:CDS 45.0%
!! CGGTTAAAGTGGTTTTGCCA+TGG - chr3_3:65208739-65208758 None:intergenic 45.0%
! TATGCTCATGTTGATTGCCC+CGG + chr3_3:65208899-65208918 Msa0464980:CDS 45.0%
TTGACATAATCAGCGTGACC+GGG - chr3_3:65208920-65208939 None:intergenic 45.0%
CTTGACATAATCAGCGTGAC+CGG - chr3_3:65208921-65208940 None:intergenic 45.0%
AGCGAGAAGGATGTGTTCTT+TGG - chr3_3:65209020-65209039 None:intergenic 45.0%
TCAAGAACACAACCACACTC+GGG - chr3_3:65209353-65209372 None:intergenic 45.0%
GGTTGTGTTCTTGAACAAGC+AGG + chr3_3:65209359-65209378 Msa0464980:CDS 45.0%
TGAGGAGCTTCTTGAACTTG+TGG + chr3_3:65209395-65209414 Msa0464980:CDS 45.0%
ACTTGTGGAGCTTGAAGTTC+GGG + chr3_3:65209410-65209429 Msa0464980:CDS 45.0%
CTCTCGTCTTACGAATTTCC+TGG + chr3_3:65209438-65209457 Msa0464980:CDS 45.0%
ACAATCGGAATGTCATCTCC+AGG - chr3_3:65209459-65209478 None:intergenic 45.0%
! AGCGCTGAACCAGAAACAAT+CGG - chr3_3:65209474-65209493 None:intergenic 45.0%
!! TGTTTCTGGTTCAGCGCTAT+TGG + chr3_3:65209476-65209495 Msa0464980:CDS 45.0%
!! ATTGGCGTTGGAAGCATTAG+TGG + chr3_3:65209494-65209513 Msa0464980:CDS 45.0%
GGGAGATCTGTTTGTCTTTG+AGG - chr3_3:65209606-65209625 None:intergenic 45.0%
! CCCCTTTTTGCTAGCTATTG+AGG + chr3_3:65209623-65209642 Msa0464980:CDS 45.0%
! GTGTTTTCAATCACTGGTCG+TGG + chr3_3:65209648-65209667 Msa0464980:CDS 45.0%
TTGCCACCGGAAGAATTGAA+AGG + chr3_3:65209676-65209695 Msa0464980:CDS 45.0%
TGCCACCGGAAGAATTGAAA+GGG + chr3_3:65209677-65209696 Msa0464980:CDS 45.0%
AAGCCCCCTTTCAATTCTTC+CGG - chr3_3:65209685-65209704 None:intergenic 45.0%
GGTGATGTAGTTGACCTTGT+TGG + chr3_3:65209714-65209733 Msa0464980:CDS 45.0%
TCGTTTCCCTCAAACCAACA+AGG - chr3_3:65209731-65209750 None:intergenic 45.0%
!! TTGTTGGTTTGAGGGAAACG+AGG + chr3_3:65209730-65209749 Msa0464980:CDS 45.0%
! ATTTTGGACGATGCTATGGC+TGG + chr3_3:65209789-65209808 Msa0464980:CDS 45.0%
GGCCTATAACCAGCAAAGAA+AGG - chr3_3:65209963-65209982 None:intergenic 45.0%
ACCATCTTAACACGATCACC+GGG - chr3_3:65210071-65210090 None:intergenic 45.0%
CACCATCTTAACACGATCAC+CGG - chr3_3:65210072-65210091 None:intergenic 45.0%
! AAGAGTGATGATGCAGCAAC+TGG - chr3_3:65210214-65210233 None:intergenic 45.0%
CCGCAGACAAGTTGTATGAA+GGG - chr3_3:65210295-65210314 None:intergenic 45.0%
CCCTTCATACAACTTGTCTG+CGG + chr3_3:65210292-65210311 Msa0464980:three_prime_UTR 45.0%
ACCGCAGACAAGTTGTATGA+AGG - chr3_3:65210296-65210315 None:intergenic 45.0%
GCCTCATATGCGTGCTATAA+TGG + chr3_3:65210545-65210564 Msa0464980:three_prime_UTR 45.0%
TGAAGCAAAGTAGTGCACCG+CGG + chr3_3:65208239-65208258 Msa0464980:five_prime_UTR 50.0%
CGCGTCACTCCAAAAGTGAA+AGG + chr3_3:65208262-65208281 Msa0464980:five_prime_UTR 50.0%
AATGGAAGCGGAAGTGGTGA+AGG - chr3_3:65208513-65208532 None:intergenic 50.0%
! GGAGGGGTTTGAAATGGAAG+CGG - chr3_3:65208525-65208544 None:intergenic 50.0%
! AGTGGTGGAGGGGTTTGAAA+TGG - chr3_3:65208531-65208550 None:intergenic 50.0%
!! GAGGCGAGTTAGGGTTAGTT+TGG - chr3_3:65208561-65208580 None:intergenic 50.0%
TTTGCGCTCGAATTTGCCAC+GGG - chr3_3:65208678-65208697 None:intergenic 50.0%
TTTAACCGCTGCTCTCACCA+TGG + chr3_3:65208751-65208770 Msa0464980:CDS 50.0%
!! ACCATGGCTTTGGCTTCTCT+AGG + chr3_3:65208767-65208786 Msa0464980:CDS 50.0%
ACCTAGAGAAGCCAAAGCCA+TGG - chr3_3:65208771-65208790 None:intergenic 50.0%
ATACCACGAGCACGTTCTTC+AGG - chr3_3:65208833-65208852 None:intergenic 50.0%
TGACATAATCAGCGTGACCG+GGG - chr3_3:65208919-65208938 None:intergenic 50.0%
!! GATTACTGGTGCTGCTCAGA+TGG + chr3_3:65208946-65208965 Msa0464980:CDS 50.0%
! GGTTTGAGGCATAGGACCAT+CGG - chr3_3:65208999-65209018 None:intergenic 50.0%
ACACATCCTTCTCGCTAAGC+AGG + chr3_3:65209024-65209043 Msa0464980:CDS 50.0%
CTTGAACAAGCAGGACCAAG+TGG + chr3_3:65209368-65209387 Msa0464980:CDS 50.0%
GAAGCTCCTCATCATCCACT+TGG - chr3_3:65209386-65209405 None:intergenic 50.0%
GCCACCGGAAGAATTGAAAG+GGG + chr3_3:65209678-65209697 Msa0464980:CDS 50.0%
CCACCGGAAGAATTGAAAGG+GGG + chr3_3:65209679-65209698 Msa0464980:CDS 50.0%
!! GAAAGGGGGCTTGTTAAGGT+TGG + chr3_3:65209693-65209712 Msa0464980:CDS 50.0%
! TGCTATGGCTGGTGATAACG+TGG + chr3_3:65209800-65209819 Msa0464980:CDS 50.0%
! GCTATGGCTGGTGATAACGT+GGG + chr3_3:65209801-65209820 Msa0464980:CDS 50.0%
!! AACGTGGGTTTGTTGCTGAG+AGG + chr3_3:65209816-65209835 Msa0464980:CDS 50.0%
GAGTGAGGAGTGATAGTTCC+AGG - chr3_3:65209885-65209904 None:intergenic 50.0%
CAAGGATGAGGAGTCGAAGA+TGG + chr3_3:65210040-65210059 Msa0464980:CDS 50.0%
CGGTGATCGTGTTAAGATGG+TGG + chr3_3:65210070-65210089 Msa0464980:CDS 50.0%
GGTTGAACTCATTGTCCCTG+TGG + chr3_3:65210091-65210110 Msa0464980:CDS 50.0%
GTCCCTGTGGCTATTGAACA+AGG + chr3_3:65210104-65210123 Msa0464980:CDS 50.0%
!! ACCGTTGGAGCTGGTGTTAT+CGG + chr3_3:65210158-65210177 Msa0464980:CDS 50.0%
TCCGATAACACCAGCTCCAA+CGG - chr3_3:65210162-65210181 None:intergenic 50.0%
TGAAGCAAAGTAGTGCACCG+CGG + chr3_3:65208239-65208258 Msa0464980:five_prime_UTR 50.0%
CGCGTCACTCCAAAAGTGAA+AGG + chr3_3:65208262-65208281 Msa0464980:five_prime_UTR 50.0%
AATGGAAGCGGAAGTGGTGA+AGG - chr3_3:65208513-65208532 None:intergenic 50.0%
! GGAGGGGTTTGAAATGGAAG+CGG - chr3_3:65208525-65208544 None:intergenic 50.0%
! AGTGGTGGAGGGGTTTGAAA+TGG - chr3_3:65208531-65208550 None:intergenic 50.0%
!! GAGGCGAGTTAGGGTTAGTT+TGG - chr3_3:65208561-65208580 None:intergenic 50.0%
TTTGCGCTCGAATTTGCCAC+GGG - chr3_3:65208678-65208697 None:intergenic 50.0%
TTTAACCGCTGCTCTCACCA+TGG + chr3_3:65208751-65208770 Msa0464980:CDS 50.0%
!! ACCATGGCTTTGGCTTCTCT+AGG + chr3_3:65208767-65208786 Msa0464980:CDS 50.0%
ACCTAGAGAAGCCAAAGCCA+TGG - chr3_3:65208771-65208790 None:intergenic 50.0%
ATACCACGAGCACGTTCTTC+AGG - chr3_3:65208833-65208852 None:intergenic 50.0%
TGACATAATCAGCGTGACCG+GGG - chr3_3:65208919-65208938 None:intergenic 50.0%
!! GATTACTGGTGCTGCTCAGA+TGG + chr3_3:65208946-65208965 Msa0464980:CDS 50.0%
! GGTTTGAGGCATAGGACCAT+CGG - chr3_3:65208999-65209018 None:intergenic 50.0%
ACACATCCTTCTCGCTAAGC+AGG + chr3_3:65209024-65209043 Msa0464980:CDS 50.0%
CTTGAACAAGCAGGACCAAG+TGG + chr3_3:65209368-65209387 Msa0464980:CDS 50.0%
GAAGCTCCTCATCATCCACT+TGG - chr3_3:65209386-65209405 None:intergenic 50.0%
GCCACCGGAAGAATTGAAAG+GGG + chr3_3:65209678-65209697 Msa0464980:CDS 50.0%
CCACCGGAAGAATTGAAAGG+GGG + chr3_3:65209679-65209698 Msa0464980:CDS 50.0%
!! GAAAGGGGGCTTGTTAAGGT+TGG + chr3_3:65209693-65209712 Msa0464980:CDS 50.0%
! TGCTATGGCTGGTGATAACG+TGG + chr3_3:65209800-65209819 Msa0464980:CDS 50.0%
! GCTATGGCTGGTGATAACGT+GGG + chr3_3:65209801-65209820 Msa0464980:CDS 50.0%
!! AACGTGGGTTTGTTGCTGAG+AGG + chr3_3:65209816-65209835 Msa0464980:CDS 50.0%
GAGTGAGGAGTGATAGTTCC+AGG - chr3_3:65209885-65209904 None:intergenic 50.0%
CAAGGATGAGGAGTCGAAGA+TGG + chr3_3:65210040-65210059 Msa0464980:CDS 50.0%
CGGTGATCGTGTTAAGATGG+TGG + chr3_3:65210070-65210089 Msa0464980:CDS 50.0%
GGTTGAACTCATTGTCCCTG+TGG + chr3_3:65210091-65210110 Msa0464980:CDS 50.0%
GTCCCTGTGGCTATTGAACA+AGG + chr3_3:65210104-65210123 Msa0464980:CDS 50.0%
!! ACCGTTGGAGCTGGTGTTAT+CGG + chr3_3:65210158-65210177 Msa0464980:CDS 50.0%
TCCGATAACACCAGCTCCAA+CGG - chr3_3:65210162-65210181 None:intergenic 50.0%
! AGCGGAAGTGGTGAAGGTGT+GGG - chr3_3:65208507-65208526 None:intergenic 55.0%
AAGCGGAAGTGGTGAAGGTG+TGG - chr3_3:65208508-65208527 None:intergenic 55.0%
! TAGTTTGGGACGGAGAGTGG+TGG - chr3_3:65208546-65208565 None:intergenic 55.0%
!! GGTTAGTTTGGGACGGAGAG+TGG - chr3_3:65208549-65208568 None:intergenic 55.0%
GGAAGAGGAGAGGCGAGTTA+GGG - chr3_3:65208570-65208589 None:intergenic 55.0%
AGGAAGAGGAGAGGCGAGTT+AGG - chr3_3:65208571-65208590 None:intergenic 55.0%
GGTTGAGGAAGGAAGAGGAG+AGG - chr3_3:65208580-65208599 None:intergenic 55.0%
GATTGTGGAGGGGTTGAGGA+AGG - chr3_3:65208591-65208610 None:intergenic 55.0%
TGAGGTGGAGGATTGTGGAG+GGG - chr3_3:65208601-65208620 None:intergenic 55.0%
GTGAGGTGGAGGATTGTGGA+GGG - chr3_3:65208602-65208621 None:intergenic 55.0%
AGTGAGGTGGAGGATTGTGG+AGG - chr3_3:65208603-65208622 None:intergenic 55.0%
!! TTGGTTTGGAGGAGGGAGTG+AGG - chr3_3:65208619-65208638 None:intergenic 55.0%
!! GTGGTGGTTGGTTTGGAGGA+GGG - chr3_3:65208626-65208645 None:intergenic 55.0%
!! AGTGGTGGTTGGTTTGGAGG+AGG - chr3_3:65208627-65208646 None:intergenic 55.0%
!! TGGTTTTGCCATGGTCGACG+TGG - chr3_3:65208730-65208749 None:intergenic 55.0%
GGTGAGAGCAGCGGTTAAAG+TGG - chr3_3:65208750-65208769 None:intergenic 55.0%
CAAAGCCATGGTGAGAGCAG+CGG - chr3_3:65208759-65208778 None:intergenic 55.0%
!! ACTGGTGCTGCTCAGATGGA+CGG + chr3_3:65208950-65208969 Msa0464980:CDS 55.0%
GGCGCTATTCTCGTTGTCTC+CGG + chr3_3:65208971-65208990 Msa0464980:CDS 55.0%
!! TTAGGTTGGTGTCCCGAGTG+TGG + chr3_3:65209338-65209357 Msa0464980:intron 55.0%
GCAGGACCAAGTGGATGATG+AGG + chr3_3:65209377-65209396 Msa0464980:CDS 55.0%
TGGTTCAGCGCTATTGGCGT+TGG + chr3_3:65209482-65209501 Msa0464980:CDS 55.0%
! ACGTGGTGATAACGAGTGGG+TGG + chr3_3:65209533-65209552 Msa0464980:CDS 55.0%
CCCCCTTTCAATTCTTCCGG+TGG - chr3_3:65209682-65209701 None:intergenic 55.0%
!! ACGAGGAGCACTACAGTGAC+CGG + chr3_3:65209747-65209766 Msa0464980:CDS 55.0%
!!! GGGATGGTTTTGGCTAAGCC+TGG + chr3_3:65209864-65209883 Msa0464980:CDS 55.0%
! GAGTCGAAGATGGTGATGCC+CGG + chr3_3:65210050-65210069 Msa0464980:CDS 55.0%
GCCCGGTGATCGTGTTAAGA+TGG + chr3_3:65210067-65210086 Msa0464980:CDS 55.0%
AGAGAAGGAGGGAAGACCGT+TGG + chr3_3:65210143-65210162 Msa0464980:CDS 55.0%
! AGCGGAAGTGGTGAAGGTGT+GGG - chr3_3:65208507-65208526 None:intergenic 55.0%
AAGCGGAAGTGGTGAAGGTG+TGG - chr3_3:65208508-65208527 None:intergenic 55.0%
! TAGTTTGGGACGGAGAGTGG+TGG - chr3_3:65208546-65208565 None:intergenic 55.0%
!! GGTTAGTTTGGGACGGAGAG+TGG - chr3_3:65208549-65208568 None:intergenic 55.0%
GGAAGAGGAGAGGCGAGTTA+GGG - chr3_3:65208570-65208589 None:intergenic 55.0%
AGGAAGAGGAGAGGCGAGTT+AGG - chr3_3:65208571-65208590 None:intergenic 55.0%
GGTTGAGGAAGGAAGAGGAG+AGG - chr3_3:65208580-65208599 None:intergenic 55.0%
GATTGTGGAGGGGTTGAGGA+AGG - chr3_3:65208591-65208610 None:intergenic 55.0%
TGAGGTGGAGGATTGTGGAG+GGG - chr3_3:65208601-65208620 None:intergenic 55.0%
GTGAGGTGGAGGATTGTGGA+GGG - chr3_3:65208602-65208621 None:intergenic 55.0%
AGTGAGGTGGAGGATTGTGG+AGG - chr3_3:65208603-65208622 None:intergenic 55.0%
!! TTGGTTTGGAGGAGGGAGTG+AGG - chr3_3:65208619-65208638 None:intergenic 55.0%
!! GTGGTGGTTGGTTTGGAGGA+GGG - chr3_3:65208626-65208645 None:intergenic 55.0%
!! AGTGGTGGTTGGTTTGGAGG+AGG - chr3_3:65208627-65208646 None:intergenic 55.0%
!! TGGTTTTGCCATGGTCGACG+TGG - chr3_3:65208730-65208749 None:intergenic 55.0%
GGTGAGAGCAGCGGTTAAAG+TGG - chr3_3:65208750-65208769 None:intergenic 55.0%
CAAAGCCATGGTGAGAGCAG+CGG - chr3_3:65208759-65208778 None:intergenic 55.0%
!! ACTGGTGCTGCTCAGATGGA+CGG + chr3_3:65208950-65208969 Msa0464980:CDS 55.0%
GGCGCTATTCTCGTTGTCTC+CGG + chr3_3:65208971-65208990 Msa0464980:CDS 55.0%
!! TTAGGTTGGTGTCCCGAGTG+TGG + chr3_3:65209338-65209357 Msa0464980:intron 55.0%
GCAGGACCAAGTGGATGATG+AGG + chr3_3:65209377-65209396 Msa0464980:CDS 55.0%
TGGTTCAGCGCTATTGGCGT+TGG + chr3_3:65209482-65209501 Msa0464980:CDS 55.0%
! ACGTGGTGATAACGAGTGGG+TGG + chr3_3:65209533-65209552 Msa0464980:CDS 55.0%
CCCCCTTTCAATTCTTCCGG+TGG - chr3_3:65209682-65209701 None:intergenic 55.0%
!! ACGAGGAGCACTACAGTGAC+CGG + chr3_3:65209747-65209766 Msa0464980:CDS 55.0%
!!! GGGATGGTTTTGGCTAAGCC+TGG + chr3_3:65209864-65209883 Msa0464980:CDS 55.0%
! GAGTCGAAGATGGTGATGCC+CGG + chr3_3:65210050-65210069 Msa0464980:CDS 55.0%
GCCCGGTGATCGTGTTAAGA+TGG + chr3_3:65210067-65210086 Msa0464980:CDS 55.0%
AGAGAAGGAGGGAAGACCGT+TGG + chr3_3:65210143-65210162 Msa0464980:CDS 55.0%
!!! ACTTTTGGAGTGACGCGCCG+CGG - chr3_3:65208259-65208278 None:intergenic 60.0%
!! GTGTGGGTGTGTGGTGGATG+GGG - chr3_3:65208491-65208510 None:intergenic 60.0%
!! GGTGTGGGTGTGTGGTGGAT+GGG - chr3_3:65208492-65208511 None:intergenic 60.0%
! AGGTGTGGGTGTGTGGTGGA+TGG - chr3_3:65208493-65208512 None:intergenic 60.0%
! GTGAAGGTGTGGGTGTGTGG+TGG - chr3_3:65208497-65208516 None:intergenic 60.0%
! GTGGTGAAGGTGTGGGTGTG+TGG - chr3_3:65208500-65208519 None:intergenic 60.0%
! TTGGGACGGAGAGTGGTGGA+GGG - chr3_3:65208542-65208561 None:intergenic 60.0%
! TTTGGGACGGAGAGTGGTGG+AGG - chr3_3:65208543-65208562 None:intergenic 60.0%
GGAGGGGTTGAGGAAGGAAG+AGG - chr3_3:65208585-65208604 None:intergenic 60.0%
GGAGGATTGTGGAGGGGTTG+AGG - chr3_3:65208595-65208614 None:intergenic 60.0%
GGGAGTGAGGTGGAGGATTG+TGG - chr3_3:65208606-65208625 None:intergenic 60.0%
GTTTGGAGGAGGGAGTGAGG+TGG - chr3_3:65208616-65208635 None:intergenic 60.0%
!! GCGAGTGGTGGTTGGTTTGG+AGG - chr3_3:65208630-65208649 None:intergenic 60.0%
! GGAGCGAGTGGTGGTTGGTT+TGG - chr3_3:65208633-65208652 None:intergenic 60.0%
CGCTGCTCTCACCATGGCTT+TGG + chr3_3:65208757-65208776 Msa0464980:CDS 60.0%
GCTCCTGAAGAACGTGCTCG+TGG + chr3_3:65208827-65208846 Msa0464980:CDS 60.0%
AGGCATAGGACCATCGGCAC+CGG - chr3_3:65208993-65209012 None:intergenic 60.0%
GGTCGTGGAACAGTTGCCAC+CGG + chr3_3:65209663-65209682 Msa0464980:CDS 60.0%
GAGCACTACAGTGACCGGAG+TGG + chr3_3:65209752-65209771 Msa0464980:CDS 60.0%
!!! ACTTTTGGAGTGACGCGCCG+CGG - chr3_3:65208259-65208278 None:intergenic 60.0%
!! GTGTGGGTGTGTGGTGGATG+GGG - chr3_3:65208491-65208510 None:intergenic 60.0%
!! GGTGTGGGTGTGTGGTGGAT+GGG - chr3_3:65208492-65208511 None:intergenic 60.0%
! AGGTGTGGGTGTGTGGTGGA+TGG - chr3_3:65208493-65208512 None:intergenic 60.0%
! GTGAAGGTGTGGGTGTGTGG+TGG - chr3_3:65208497-65208516 None:intergenic 60.0%
! GTGGTGAAGGTGTGGGTGTG+TGG - chr3_3:65208500-65208519 None:intergenic 60.0%
! TTGGGACGGAGAGTGGTGGA+GGG - chr3_3:65208542-65208561 None:intergenic 60.0%
! TTTGGGACGGAGAGTGGTGG+AGG - chr3_3:65208543-65208562 None:intergenic 60.0%
GGAGGGGTTGAGGAAGGAAG+AGG - chr3_3:65208585-65208604 None:intergenic 60.0%
GGAGGATTGTGGAGGGGTTG+AGG - chr3_3:65208595-65208614 None:intergenic 60.0%
GGGAGTGAGGTGGAGGATTG+TGG - chr3_3:65208606-65208625 None:intergenic 60.0%
GTTTGGAGGAGGGAGTGAGG+TGG - chr3_3:65208616-65208635 None:intergenic 60.0%
!! GCGAGTGGTGGTTGGTTTGG+AGG - chr3_3:65208630-65208649 None:intergenic 60.0%
! GGAGCGAGTGGTGGTTGGTT+TGG - chr3_3:65208633-65208652 None:intergenic 60.0%
CGCTGCTCTCACCATGGCTT+TGG + chr3_3:65208757-65208776 Msa0464980:CDS 60.0%
GCTCCTGAAGAACGTGCTCG+TGG + chr3_3:65208827-65208846 Msa0464980:CDS 60.0%
AGGCATAGGACCATCGGCAC+CGG - chr3_3:65208993-65209012 None:intergenic 60.0%
GGTCGTGGAACAGTTGCCAC+CGG + chr3_3:65209663-65209682 Msa0464980:CDS 60.0%
GAGCACTACAGTGACCGGAG+TGG + chr3_3:65209752-65209771 Msa0464980:CDS 60.0%
! TGGGACGGAGAGTGGTGGAG+GGG - chr3_3:65208541-65208560 None:intergenic 65.0%
TGGAGGAGGGAGTGAGGTGG+AGG - chr3_3:65208613-65208632 None:intergenic 65.0%
GAAAGGGGAGGAGCGAGTGG+TGG - chr3_3:65208642-65208661 None:intergenic 65.0%
GGTGAAAGGGGAGGAGCGAG+TGG - chr3_3:65208645-65208664 None:intergenic 65.0%
CGAATTTGCCACGGGCGGCA+CGG - chr3_3:65208670-65208689 None:intergenic 65.0%
GCGCTCGAATTTGCCACGGG+CGG - chr3_3:65208675-65208694 None:intergenic 65.0%
ACCATCGGCCACGTCGACCA+TGG + chr3_3:65208719-65208738 Msa0464980:CDS 65.0%
! CTCGTTGTCTCCGGTGCCGA+TGG + chr3_3:65208980-65208999 Msa0464980:CDS 65.0%
GGAGGGAAGACCGTTGGAGC+TGG + chr3_3:65210149-65210168 Msa0464980:CDS 65.0%
! TGGGACGGAGAGTGGTGGAG+GGG - chr3_3:65208541-65208560 None:intergenic 65.0%
TGGAGGAGGGAGTGAGGTGG+AGG - chr3_3:65208613-65208632 None:intergenic 65.0%
GAAAGGGGAGGAGCGAGTGG+TGG - chr3_3:65208642-65208661 None:intergenic 65.0%
GGTGAAAGGGGAGGAGCGAG+TGG - chr3_3:65208645-65208664 None:intergenic 65.0%
CGAATTTGCCACGGGCGGCA+CGG - chr3_3:65208670-65208689 None:intergenic 65.0%
GCGCTCGAATTTGCCACGGG+CGG - chr3_3:65208675-65208694 None:intergenic 65.0%
ACCATCGGCCACGTCGACCA+TGG + chr3_3:65208719-65208738 Msa0464980:CDS 65.0%
! CTCGTTGTCTCCGGTGCCGA+TGG + chr3_3:65208980-65208999 Msa0464980:CDS 65.0%
GGAGGGAAGACCGTTGGAGC+TGG + chr3_3:65210149-65210168 Msa0464980:CDS 65.0%
GGGGAGGAGCGAGTGGTGGT+TGG - chr3_3:65208638-65208657 None:intergenic 70.0%
GGCACGGACGGTGAAAGGGG+AGG - chr3_3:65208654-65208673 None:intergenic 70.0%
GGCGGCACGGACGGTGAAAG+GGG - chr3_3:65208657-65208676 None:intergenic 70.0%
GGGCGGCACGGACGGTGAAA+GGG - chr3_3:65208658-65208677 None:intergenic 70.0%
TTTGCCACGGGCGGCACGGA+CGG - chr3_3:65208666-65208685 None:intergenic 70.0%
GCCATGGTCGACGTGGCCGA+TGG - chr3_3:65208723-65208742 None:intergenic 70.0%
GGGGAGGAGCGAGTGGTGGT+TGG - chr3_3:65208638-65208657 None:intergenic 70.0%
GGCACGGACGGTGAAAGGGG+AGG - chr3_3:65208654-65208673 None:intergenic 70.0%
GGCGGCACGGACGGTGAAAG+GGG - chr3_3:65208657-65208676 None:intergenic 70.0%
GGGCGGCACGGACGGTGAAA+GGG - chr3_3:65208658-65208677 None:intergenic 70.0%
TTTGCCACGGGCGGCACGGA+CGG - chr3_3:65208666-65208685 None:intergenic 70.0%
GCCATGGTCGACGTGGCCGA+TGG - chr3_3:65208723-65208742 None:intergenic 70.0%
CGGGCGGCACGGACGGTGAA+AGG - chr3_3:65208659-65208678 None:intergenic 75.0%
TTCACCGTCCGTGCCGCCCG+TGG + chr3_3:65208659-65208678 Msa0464980:CDS 75.0%
CGGGCGGCACGGACGGTGAA+AGG - chr3_3:65208659-65208678 None:intergenic 75.0%
TTCACCGTCCGTGCCGCCCG+TGG + chr3_3:65208659-65208678 Msa0464980:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 65208204 65210652 65208204 ID=Msa0464980;Name=Msa0464980
chr3_3 mRNA 65208204 65210652 65208204 ID=Msa0464980-mRNA-1;Parent=Msa0464980;Name=Msa0464980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=233|1|1|1|1|1|2|456|487
chr3_3 exon 65208204 65209045 65208204 ID=Msa0464980-mRNA-1:exon:14465;Parent=Msa0464980-mRNA-1
chr3_3 exon 65209342 65210652 65209342 ID=Msa0464980-mRNA-1:exon:14466;Parent=Msa0464980-mRNA-1
chr3_3 five_prime_UTR 65208204 65208436 65208204 ID=Msa0464980-mRNA-1:five_prime_utr;Parent=Msa0464980-mRNA-1
chr3_3 CDS 65208437 65209045 65208437 ID=Msa0464980-mRNA-1:cds;Parent=Msa0464980-mRNA-1
chr3_3 CDS 65209342 65210196 65209342 ID=Msa0464980-mRNA-1:cds;Parent=Msa0464980-mRNA-1
chr3_3 three_prime_UTR 65210197 65210652 65210197 ID=Msa0464980-mRNA-1:three_prime_utr;Parent=Msa0464980-mRNA-1
Gene Sequence

>Msa0464980

ATGGCAATTTCAATTTCTTCATCTTCTTCCACAAAACTCAAACTCTCATCACCCCATCCACCACACACCCACACCTTCACCACTTCCGCTTCCATTTCAAACCCCTCCACCACTCTCCGTCCCAAACTAACCCTAACTCGCCTCTCCTCTTCCTTCCTCAACCCCTCCACAATCCTCCACCTCACTCCCTCCTCCAAACCAACCACCACTCGCTCCTCCCCTTTCACCGTCCGTGCCGCCCGTGGCAAATTCGAGCGCAAAAAGCCTCATCTCAACATCGGAACCATCGGCCACGTCGACCATGGCAAAACCACTTTAACCGCTGCTCTCACCATGGCTTTGGCTTCTCTAGGTAACAGTGCCCCTAAAAAATACGATGAAATTGACGCTGCTCCTGAAGAACGTGCTCGTGGTATTACAATTAATACTGCTACTGTTGAATATGAGACTGAAACTCGTCATTATGCTCATGTTGATTGCCCCGGTCACGCTGATTATGTCAAGAATATGATTACTGGTGCTGCTCAGATGGACGGCGCTATTCTCGTTGTCTCCGGTGCCGATGGTCCTATGCCTCAAACCAAAGAACACATCCTTCTCGCTAAGCAGGTTGGTGTCCCGAGTGTGGTTGTGTTCTTGAACAAGCAGGACCAAGTGGATGATGAGGAGCTTCTTGAACTTGTGGAGCTTGAAGTTCGGGAGCTACTCTCGTCTTACGAATTTCCTGGAGATGACATTCCGATTGTTTCTGGTTCAGCGCTATTGGCGTTGGAAGCATTAGTGGCAAACCCTACTATTAAACGTGGTGATAACGAGTGGGTGGATAAGATTTATAAACTTATGGATGAAGTTGACAACTATATACCAATCCCTCAAAGACAAACAGATCTCCCCTTTTTGCTAGCTATTGAGGATGTGTTTTCAATCACTGGTCGTGGAACAGTTGCCACCGGAAGAATTGAAAGGGGGCTTGTTAAGGTTGGTGATGTAGTTGACCTTGTTGGTTTGAGGGAAACGAGGAGCACTACAGTGACCGGAGTGGAAATGTTTCAGAAGATTTTGGACGATGCTATGGCTGGTGATAACGTGGGTTTGTTGCTGAGAGGTGTTCAGAAGATTGATATTCAAAGAGGGATGGTTTTGGCTAAGCCTGGAACTATCACTCCTCACTCTAAGTTTGAATGTATTGTGTATGTTTTGAAGAAGGAAGAAGGTGGAAGACATTCACCTTTCTTTGCTGGTTATAGGCCTCAGTTTTACATGAGAACCACAGATGTTACCGGAAAAGTTACATCTATCATGAATGACAAGGATGAGGAGTCGAAGATGGTGATGCCCGGTGATCGTGTTAAGATGGTGGTTGAACTCATTGTCCCTGTGGCTATTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACCGTTGGAGCTGGTGTTATCGGAGCTATCATTGAGTGA
Protein sequence

>Msa0464980

MAISISSSSSTKLKLSSPHPPHTHTFTTSASISNPSTTLRPKLTLTRLSSSFLNPSTILHLTPSSKPTTTRSSPFTVRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPSVVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIVSGSALLALEALVANPTIKRGDNEWVDKIYKLMDEVDNYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRIERGLVKVGDVVDLVGLRETRSTTVTGVEMFQKILDDAMAGDNVGLLLRGVQKIDIQRGMVLAKPGTITPHSKFECIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVAIEQGMRFAIREGGKTVGAGVIGAIIE*